BLASTX 2.0.10 [Aug-26-1999]
Query= XF-C04KB-GL05
(1218 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|116638|sp|P03624|COA2_BPPF3 MINOR COAT PROTEIN (ORF 483) >gi... 70 3e-11
gi|215383 (M19377) 50-kDa virion protein [Bacteriophage Pf3] 69 9e-11
gi|2623371 (U70653) sex determining protein [Mus musculus muscu... 37 0.29
gi|6680025|ref|NP_032158.1|| glutamine repeat protein 1 >gi|124... 36 0.50
gi|2623369 (U70652) sex determining protein [Mus musculus muscu... 36 0.50
gi|1351117|sp|Q05738|SRY_MOUSE SEX-DETERMINING REGION Y PROTEIN... 36 0.85
gi|2623367 (U70651) sex determining protein [Mus musculus muscu... 36 0.85
gi|1633572 (U52064) Herpesvirus saimiri ORF73 homolog [Kaposi's... 35 1.1
gi|5106561|gb|AAD39751.1|AF128626_1 (AF128626) RNA binding prot... 35 1.5
gi|3402504|dbj|BAA32226| (AB015669) ORF C5 [Ralstonia solanacea... 34 1.9
gi|544374|sp|P36417|GBF_DICDI G-BOX BINDING FACTOR (GBF) >gi|10... 34 2.5
gi|2623379 (U70657) sex determining protein [Mus musculus casta... 33 5.6
gi|5737842|gb|AAD50121.1|AF153362_1 (AF153362) adenylyl cyclase... 32 7.4
>gi|116638|sp|P03624|COA2_BPPF3 MINOR COAT PROTEIN (ORF 483)
>gi|75720|pir||VCBPI3 minor coat protein - phage Pf3
>gi|215374 (M11912) 50-kDa virion protein [Bacteriophage
Pf3]
Length = 483
Score = 70.2 bits (169), Expect = 3e-11
Identities = 38/102 (37%), Positives = 61/102 (59%)
Frame = +1
Query: 889 PSFCSWASVVCDFIDWVKSDEFLKKPLVPPDVPYVDKLPQAKTWSSGLGEGACPSPTTIP 1068
PSFCSWA+ VCD+ DW + + ++P + + +D L + K S G +CP+P +
Sbjct: 383 PSFCSWATAVCDWFDWTQ-EPIDEEPDLSGIISDIDDLERTKDIS--FGSKSCPAPIALD 439
Query: 1069 IEFSGYKTSVEISYQPFCDFAALMRPVVIVIATILAAYIAGG 1194
IEF SV++S++ FC+ A ++ +V+ A +LAAYI G
Sbjct: 440 IEF--LDMSVDLSFEWFCELAGIIYFMVMASAYVLAAYITLG 479
>gi|215383 (M19377) 50-kDa virion protein [Bacteriophage Pf3]
Length = 483
Score = 68.7 bits (165), Expect = 9e-11
Identities = 37/102 (36%), Positives = 60/102 (58%)
Frame = +1
Query: 889 PSFCSWASVVCDFIDWVKSDEFLKKPLVPPDVPYVDKLPQAKTWSSGLGEGACPSPTTIP 1068
PSFCSWA+ VCD+ DW + + ++P + + +D + K S G +CP+P +
Sbjct: 383 PSFCSWATAVCDWFDWTQ-EPIDEEPDLSGIISDIDDFERTKDIS--FGSKSCPAPIALD 439
Query: 1069 IEFSGYKTSVEISYQPFCDFAALMRPVVIVIATILAAYIAGG 1194
IEF SV++S++ FC+ A ++ +V+ A +LAAYI G
Sbjct: 440 IEF--LDMSVDLSFEWFCELAGIIYFMVMASAYVLAAYITLG 479
>gi|2623371 (U70653) sex determining protein [Mus musculus musculus]
>gi|2623373 (U70654) sex determining protein [Mus
musculus musculus]
Length = 416
Score = 37.1 bits (84), Expect = 0.29
Identities = 41/216 (18%), Positives = 75/216 (33%), Gaps = 11/216 (5%)
Frame = -3
Query: 997 YQHKEHQEEQEVSSKIHQT*PNQ*N-HKQH*PNYKKTAKPYQKKREEN*HH-------H* 842
Y H HQ++Q+ + Q Q + H Q + + Q+ + + HH H
Sbjct: 167 YDHHHHQQQQQQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHHHHQQQQFHDHH 226
Query: 841 MAADQEHEKPSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQE 662
Q H+ + + H + + +Q + Q + + Q+
Sbjct: 227 QQQQQFHDHHQQQQQQQQQQFHDHHQQKQQFHDHHHQQQQQQFHDHQQQQQQFHDHHQQQ 286
Query: 661 SQKEVNQKNNQELID-PSYSDDQYIHPPLQDDITTSQN*QKXXXXXXXXXXXXXXNFDKH 485
Q +Q+ + D P + HP Q + Q+ D H
Sbjct: 287 QQFHDHQQQQHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDHHQQKQQFHDHH 346
Query: 484 **ERS--NPEESQNKKHDHHRDAATTKQQYQQESLLKQDHSSLHALT 350
++ + + Q + HDHH +QQ QQ+ D + LT
Sbjct: 347 QQKQQFHDHHQQQQQFHDHHHQQQQQQQQQQQQQQQFHDQQLTYLLT 393
>gi|6680025|ref|NP_032158.1|| glutamine repeat protein 1 >gi|1245105
(U46463) glutamine repeat protein-1 [Mus musculus]
Length = 171
Score = 36.4 bits (82), Expect = 0.50
Identities = 24/123 (19%), Positives = 53/123 (42%)
Frame = -3
Query: 994 QHKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAKPYQKKREEN*HHH*MAADQEHEK 815
QH++HQ+ Q+ + HQ Q +Q +++ + Q ++ + H Q+H++
Sbjct: 33 QHQQHQQHQQDQHQQHQQQQQQQQQQQQHQQHQQHQQHQQHQQHQQHQQH-----QQHQQ 87
Query: 814 PSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQKN 635
H QH + + +QH Q++ +Q+Q+ Q + +Q++
Sbjct: 88 HQQHQQHQQHQQHQQQQQHQQHQQHQQQQQQQQH----QQHQQHQQHQHQQHQHQQHQQH 143
Query: 634 NQE 626
Q+
Sbjct: 144 QQQ 146
>gi|2623369 (U70652) sex determining protein [Mus musculus musculus]
Length = 418
Score = 36.4 bits (82), Expect = 0.50
Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 3/208 (1%)
Frame = -3
Query: 994 QHKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAKPYQKKREEN*HHH*MAADQEHEK 815
Q ++ Q++Q+ + H + H ++ + +++ H H Q H+
Sbjct: 176 QQQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHHHHQQQQFHDHHQQQQQFHDH 235
Query: 814 PSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQKN 635
+ + H + +Q + Q + + Q+ Q +Q+
Sbjct: 236 QQQQQQQQQQQFHDHHQQKQQFHDHHHHQQQQQFHDHQQQQQQFHDHHQQQQQFHDHQQQ 295
Query: 634 NQELID-PSYSDDQYIHPPLQDDITTSQN*QKXXXXXXXXXXXXXXNFDKH**ERS--NP 464
+ D P + HP Q + Q+ D H ++ +
Sbjct: 296 QHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDHHQQKQQFHDHHQQKQQFHDH 355
Query: 463 EESQNKKHDHHRDAATTKQQYQQESLLKQDH 371
+ Q + HDHH +QQ QQ+ +Q H
Sbjct: 356 HQQQQQFHDHHHQQQQQQQQQQQQQQQQQFH 386
>gi|1351117|sp|Q05738|SRY_MOUSE SEX-DETERMINING REGION Y PROTEIN
(TESTIS-DETERMINING FACTOR) >gi|479881|pir||S35565
sex-determining protein - mouse >gi|1085549|pir||S43344
sex-determining protein - mouse >gi|2623375 (U70655) sex
determining protein [Mus musculus] >gi|2623377 (U70656)
sex determining protein [Mus musculus]
>gi|6006571|emb|CAB56798.1| (X67204) sex determining
region of Y protein [Mus musculus]
Length = 395
Score = 35.6 bits (80), Expect = 0.85
Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 6/200 (3%)
Frame = -3
Query: 991 HKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAK---PYQKKREEN*HHH*MAADQEH 821
H HQ++Q+ Q Q +Q ++++ + +Q++++ + HHH Q H
Sbjct: 156 HNHHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHHHHQEQQFH 215
Query: 820 EKPSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQ 641
+ +D H + + Q + +Q Q+ Q +Q
Sbjct: 216 DHHQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFHDHHHHQQQQQFHDHQQQQQQFHDHQ 275
Query: 640 KNNQELID-PSYSDDQYIHPPLQDDITTSQN*QKXXXXXXXXXXXXXXNFDKH**ERS-- 470
+ + D P + HP Q + Q+ D H ++
Sbjct: 276 QQQHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDHHQQKQQFHDHHQQKQQFH 335
Query: 469 NPEESQNKKHDHHRDAATTKQQYQQE 392
+ + Q + HDHH+ +QQ QQ+
Sbjct: 336 DHHQQQQQFHDHHQQQQQQQQQQQQQ 361
>gi|2623367 (U70651) sex determining protein [Mus musculus musculus]
Length = 420
Score = 35.6 bits (80), Expect = 0.85
Identities = 35/215 (16%), Positives = 71/215 (32%), Gaps = 3/215 (1%)
Frame = -3
Query: 994 QHKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAKPYQKKREEN*HHH*MAADQEHEK 815
Q ++ Q++Q+ + H + H ++ + +++ H H Q H+
Sbjct: 180 QQQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHHHHQQQQFHDHHQQQQQFHDH 239
Query: 814 PSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQKN 635
+ + H + +Q + Q + + Q+ Q +Q+
Sbjct: 240 QQQQQQQQQQQFHDHHQQKQQFHDHHHHQQQQQFHDHQQQQQQFHDHHQQQQQFHDHQQQ 299
Query: 634 NQELID-PSYSDDQYIHPPLQDDITTSQN*QKXXXXXXXXXXXXXXNFDKH**ERS--NP 464
+ D P + HP Q + Q+ D H ++ +
Sbjct: 300 QHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDHHQQKQQFHDHHQQKQQFHDH 359
Query: 463 EESQNKKHDHHRDAATTKQQYQQESLLKQDHSSLHALT 350
+ Q + HDHH +QQ QQ+ D + LT
Sbjct: 360 HQQQQQFHDHHHHQQQQQQQQQQQQQQFHDQQLTYLLT 397
>gi|1633572 (U52064) Herpesvirus saimiri ORF73 homolog [Kaposi's
sarcoma-associated herpes-like virus] >gi|1718329
(U75698) ORF 73; extensive acidic domains, potential
leucine zipper; immediate early protein homolog [Kaposi's
sarcoma-associated herpesvirus]
Length = 1162
Score = 35.2 bits (79), Expect = 1.1
Identities = 35/207 (16%), Positives = 74/207 (34%)
Frame = -3
Query: 994 QHKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAKPYQKKREEN*HHH*MAADQEHEK 815
Q +E Q+++ + Q P Q +Q P ++ + ++RE Q+ E
Sbjct: 530 QQQEPQQQEPQQQEPQQQEPQQREPQQREPQQREPQQREPQQREPQQREPQQREPQQREP 589
Query: 814 PSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQKN 635
P + D ++ +Q + Q+E Q Q+ Q++ Q+
Sbjct: 590 QQREPQQQDEQQQDEQQQDEQQQDEQQQDEQQQDE--QQQDEQQQDEQQQDEQQQDEQQQ 647
Query: 634 NQELIDPSYSDDQYIHPPLQDDITTSQN*QKXXXXXXXXXXXXXXNFDKH**ERSNPEES 455
+++ D D+Q QD+ + Q+ ++ E+ +E
Sbjct: 648 DEQQQDEQQQDEQQQDEQQQDEQQQDEQ-QQDEQQQDEQQQDEQQQDEQQQDEQEQQDEQ 706
Query: 454 QNKKHDHHRDAATTKQQYQQESLLKQD 374
+ + +D +Q QQ+ +QD
Sbjct: 707 EQQDEQEQQDEQQQDEQQQQDEQQQQD 733
>gi|5106561|gb|AAD39751.1|AF128626_1 (AF128626) RNA binding protein
PufA [Dictyostelium discoideum]
Length = 795
Score = 34.8 bits (78), Expect = 1.5
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = -3
Query: 463 EESQNKKHDHHRDAATTKQQYQQESLLKQDHSSLHALTHQ*PTLPH*SNHST*NKHYKRP 284
++ Q ++H HH ++QQ QQ+ +Q SS+H HQ P + S + ++
Sbjct: 9 QQQQQQQHHHHHHHQQSQQQQQQQQSQQQQRSSIH---HQQPP-QYGIYSSLQQQQFQNG 64
Query: 283 SHGERQPLQEN--LMLKLIYLQEQYNT*HHSPKQ*T*PQR*QKY*HHLK 143
+G R + N + + LQ+Q HH +Q PQ Q+ H K
Sbjct: 65 GNGYRGQINTNDFYINEQQQLQQQQQQQHHHHQQ--PPQHHQQQQHAQK 111
>gi|3402504|dbj|BAA32226| (AB015669) ORF C5 [Ralstonia solanacearum]
Length = 180
Score = 34.4 bits (77), Expect = 1.9
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = +1
Query: 1015 TWSSGLGEGACPSPTTIPIEFSGYKTSVEISYQPFCDFAALMRPVVIVIATILAAYIAGG 1194
T SG G P P+ + G S S +P CD A + RPV+I A + AA I G
Sbjct: 116 TPDSGWGADTAPCPSDLTASIHGMPISW--SLKPVCDGADMFRPVIIACAWLGAALIVIG 173
>gi|544374|sp|P36417|GBF_DICDI G-BOX BINDING FACTOR (GBF)
>gi|1076833|pir||A53185 G-box-binding factor - slime
mold (Dictyostelium discoideum) >gi|456562 (L29075)
G-box binding factor [Dictyostelium discoideum]
Length = 708
Score = 34.0 bits (76), Expect = 2.5
Identities = 23/122 (18%), Positives = 51/122 (40%)
Frame = -3
Query: 994 QHKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAKPYQKKREEN*HHH*MAADQEHEK 815
Q ++H ++Q+ + HQ Q +H+Q + + Q++ + HH + Q +
Sbjct: 135 QQQQHHQQQQQQPQHHQQMQQQQHHQQMQQQQQHHQQMQQQQHHQQMQHHQLQQHQHQHQ 194
Query: 814 PSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQKN 635
++ + QH + + QH + Q++ Q+Q +Q++ Q+
Sbjct: 195 QQQQQQQHQQQH--HQQQQQQQQQHHQQQQHHQHSQPQQQHQHNQQQQHQHNQQQHQQQQ 252
Query: 634 NQ 629
NQ
Sbjct: 253 NQ 254
>gi|2623379 (U70657) sex determining protein [Mus musculus
castaneus]
Length = 399
Score = 32.8 bits (73), Expect = 5.6
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 3/202 (1%)
Frame = -3
Query: 997 YQHKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAKPYQKKREEN*HHH*MAADQEHE 818
Y H HQ++Q+ + Q H H ++ +Q++++ + HHH Q H+
Sbjct: 166 YDHHHHQQQQQQQQQQQQF------HDHH-QQKQQFHDHHQQQQQFHDHHHHHQEQQFHD 218
Query: 817 KPSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQK 638
+D H + + Q + +Q Q+ Q +Q+
Sbjct: 219 HHQQQQQFHDHHQQQQQQQQQQFHDHHQQKQQFHDHHHHQQQQQFHDHQQQQQQFHDHQQ 278
Query: 637 NNQELID-PSYSDDQYIHPPLQDDITTSQN*QKXXXXXXXXXXXXXXNFDKH**ERS--N 467
+ D P + HP Q + Q+ D H ++ +
Sbjct: 279 QQHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDHHQQKQQFHDHHQQKQQFHD 338
Query: 466 PEESQNKKHDHHRDAATTKQQYQQE 392
+ Q + HDH + +QQ QQ+
Sbjct: 339 HHQQQQQFHDHQQQQQQQQQQQQQQ 363
>gi|5737842|gb|AAD50121.1|AF153362_1 (AF153362) adenylyl cyclase
[Dictyostelium discoideum]
Length = 2123
Score = 32.5 bits (72), Expect = 7.4
Identities = 37/209 (17%), Positives = 76/209 (35%)
Frame = -3
Query: 994 QHKEHQEEQEVSSKIHQT*PNQ*NHKQH*PNYKKTAKPYQKKREEN*HHH*MAADQEHEK 815
Q ++ Q++Q+ S I Q Q + Q ++ + Q+++++ Q+ ++
Sbjct: 1890 QQQQQQQQQQQSQNIQQPQSQQSQYVQQPQQQQQQQQQQQQQQQQQRQQQQQQQQQQQQQ 1949
Query: 814 PSTHPLKNDATYXXXXXXXXXXXQHPSENRLKQH*L*KDQNEPTAPNQYQESQKEVNQKN 635
P + + +L+Q + Q +P+ P Q Q+ Q+ Q+
Sbjct: 1950 QQQQPQQ--------------------QQQLQQQQQHQQQKQPS-PQQQQQPQQPQQQQQ 1988
Query: 634 NQELIDPSYSDDQYIHPPLQDDITTSQN*QKXXXXXXXXXXXXXXNFDKH**ERSNPEES 455
Q +QY H Q Q+ + ++ ++
Sbjct: 1989 QQ-------IQNQYQHQLQYQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 2041
Query: 454 QNKKHDHHRDAATTKQQYQQESLLKQDHS 368
Q ++H HH +QQ+QQ+S Q S
Sbjct: 2042 QQQQHHHHHHQ---QQQFQQQSQQSQQQS 2067
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226864680
Number of Sequences: 443958
Number of extensions: 4420099
Number of successful extensions: 13386
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13288
Number of HSP's gapped (non-prelim): 49
length of query: 406
length of database: 136,619,797
effective HSP length: 55
effective length of query: 350
effective length of database: 112,202,107
effective search space: 39270737450
effective search space used: 39270737450
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)