BLASTX 2.0.10 [Aug-26-1999]
Query= XF-11A04-GL63
(618 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|2984376 (AE000776) hypothetical protein [Aquifex aeolicus] 59 3e-08
gi|2984362 (AE000776) transcriptional regulator (TetR/AcrR fami... 52 4e-06
gi|5441765|emb|CAB46789.1| (AL096811) putative tetR transcripti... 52 4e-06
gi|2370323|emb|CAB11596| (Z98943) hypothetical protein Rv1534 [... 51 8e-06
gi|5458882|emb|CAB50369.1| (AJ248287) hypothetical protein [Pyr... 51 1e-05
gi|1652289|dbj|BAA17212| (D90904) hypothetical protein [Synecho... 50 1e-05
gi|6688824|emb|CAB65288.1| (AJ250372) inactive regulatory prote... 50 2e-05
gi|6460213|gb|AAF11942.1|AE002070_4 (AE002070) transcriptional ... 48 7e-05
gi|4240425 (AF080235) LanK [Streptomyces cyanogenus] 47 1e-04
gi|2983006 (AE000683) putative protein [Aquifex aeolicus] 47 1e-04
gi|4803692|emb|CAB42672.1| (AL049819) putative transcriptional ... 47 1e-04
gi|2879769|emb|CAA68918| (Y07639) shows signature of helix-turn... 47 1e-04
gi|6562775|emb|CAB62706.1| (AL133423) putative transcriptional ... 47 1e-04
gi|4981571|gb|AAD36107.1|AE001764_10 (AE001764) transcriptional... 46 3e-04
gi|6457735|gb|AAF09664.1|AE001870_3 (AE001870) transcriptional ... 46 3e-04
gi|418449|sp|P32398|YHGD_BACSU HYPOTHETICAL TRANSCRIPTIONAL REG... 46 3e-04
gi|5813900|gb|AAD52054.1|AF086783_2 (AF086783) IcaR [Staphyloco... 46 3e-04
gi|5199319|gb|AAD40801.1|AF145049_2 (AF145049) gamma-butyrolact... 44 0.001
gi|1655820 (U58281) TetR homologue [Streptomyces roseosporus] 44 0.001
gi|4539188|emb|CAB39717.1| (AL049485) putative regulatory prote... 44 0.001
gi|6458812|gb|AAF10653.1|AE001958_7 (AE001958) transcriptional ... 44 0.001
gi|282575|pir||S27686 tcmR protein - Streptomyces glaucescens >... 43 0.002
gi|730916|sp|P39885|TCMR_STRGA TETRACENOMYCIN C TRANSCRIPTIONAL... 43 0.002
gi|5420013|emb|CAB46405.1| (AL096743) putative transcriptional ... 43 0.002
gi|6318603|gb|AAF06961.1| (AF156161) TarA [Streptomyces tendae] 42 0.004
gi|3201567|dbj|BAA28747| (AB000384) CprA [Streptomyces coelicolor] 42 0.005
gi|1770039|emb|CAA99572.1| (Z75208) hypothetical protein [Bacil... 42 0.005
gi|2815319|emb|CAA16443| (AL021529) putative transcriptional re... 41 0.007
gi|2791408|emb|CAA16002| (AL021184) hypothetical protein Rv1474... 41 0.007
gi|1877288|emb|CAB07159| (Z92774) hypothetical protein Rv3557c ... 41 0.009
gi|1174822|sp|P29280|TTK_HAEIN TTK PROTEIN HOMOLOG >gi|1074577|... 41 0.009
gi|2978430 (U43366) IcaR [Staphylococcus epidermidis] 41 0.009
gi|6136688|sp|O31500|YERO_BACSU HYPOTHETICAL TRANSCRIPTIONAL RE... 40 0.019
gi|4210936|gb|AAD12171.1| (AF055922) butyrolactone receptor [St... 40 0.019
gi|2183255 (AF002133) transcriptional regulator [Mycobacterium ... 40 0.019
gi|6459139|gb|AAF10954.1|AE001984_4 (AE001984) transcriptional ... 40 0.019
gi|2622161 (AE000877) transcriptional regulator related protein... 39 0.025
gi|2633161|emb|CAB12666| (Z99108) similar to hypothetical prote... 39 0.025
gi|4585599|emb|CAB40867.1| (AL049628) putative tetR-family regu... 39 0.033
gi|1934613 (U93874) regulatory protein [Bacillus subtilis] >gi|... 39 0.033
gi|2495431|sp|Q11063|YC55_MYCTU HYPOTHETICAL TRANSCRIPTIONAL RE... 39 0.033
gi|4539185|emb|CAB39714.1| (AL049485) putative regulatory prote... 39 0.043
gi|4154069|emb|CAA22722| (AL035161) putative transcriptional re... 39 0.043
gi|5912516|emb|CAB56142.1| (AL117669) putative transcriptional ... 38 0.056
gi|6002942|gb|AAF00218.1|AF164961_7 (AF164961) regulatory prote... 38 0.074
gi|1881364|dbj|BAA19391| (AB001488) FUNCTION UNKNOWN. [Bacillus... 38 0.074
gi|3261702|emb|CAB06537| (Z84498) hypothetical protein Rv1963c ... 38 0.074
gi|2632999|emb|CAB12505| (Z99107) similar to hypothetical prote... 37 0.13
gi|6469265|emb|CAB61726.1| (AL133220) putative TetR-family tran... 37 0.17
gi|6434739|emb|CAB61186.1| (AL132973) putative TetR-family tran... 37 0.17
gi|2618838 (AF017113) YvkB [Bacillus subtilis] >gi|2636046|emb|... 36 0.29
gi|5002555|gb|AAD37459.1| (AF074603) putative transcriptional r... 36 0.37
gi|1805455|dbj|BAA09017| (D50453) ycnC [Bacillus subtilis] >gi|... 36 0.37
gi|401566|sp|P31676|ENVR_ECOLI POTENTIAL ACREF/ENVCD OPERON REP... 36 0.37
gi|2193923|emb|CAB09599| (Z96800) hypothetical protein Rv0302 [... 36 0.37
gi|2342430|dbj|BAA21859| (AB001683) FarA [Streptomyces sp.] 35 0.49
gi|5123660|emb|CAB45349.1| (AL079345) putative transcriptional ... 35 0.64
gi|6460190|gb|AAF11921.1|AE002068_4 (AE002068) transcriptional ... 35 0.64
gi|2827570|emb|CAA16625| (AL021646) hypothetical protein Rv3160... 35 0.64
gi|5852322|gb|AAD54003.1|AF088856_2 (AF088856) hypothetical pro... 35 0.64
gi|1881339|dbj|BAA19366| (AB001488) PROBABLE TRANSCRIPTIONAL RE... 34 0.84
gi|5763889|emb|CAB53270.1| (AL109972) putative tetR-family tran... 34 1.1
gi|5441773|emb|CAB46797.1| (AL096811) putative transcriptional ... 34 1.1
gi|6644157|gb|AAF20928.1|AF207529_2 (AF207529) PhlF [Pseudomona... 34 1.1
gi|2245327|emb|CAB10566| (Z97345) hypothetical protein Rv1776c ... 34 1.4
gi|1163923|gb|AAB48110.1| (U41818) PhlF [Pseudomonas fluorescens] 33 1.9
gi|1723002|sp|Q10774|YF56_MYCTU HYPOTHETICAL 22.3 KD PROTEIN RV... 33 1.9
gi|5199321|gb|AAD40803.1|AF145049_4 (AF145049) hypothetical tra... 33 1.9
gi|4884815|gb|AAD31815.1|AF129856_1 (AF129856) transcriptional ... 33 1.9
gi|3328116 (AF072887) regulator AmrR [Burkholderia pseudomallei] 33 1.9
gi|6459946|gb|AAF11696.1|AE002049_1 (AE002049) transcriptional ... 33 2.5
gi|987091|emb|CAA60451| (X86780) regulator of antibiotic transp... 32 3.2
gi|1176684|sp|P42097|YPB3_LACLA HYPOTHETICAL 22.2 KD PROTEIN IN... 32 3.2
gi|6136468|sp|Q10528|YM50_MYCTU HYPOTHETICAL TRANSCRIPTIONAL RE... 32 4.2
gi|2415719|dbj|BAA22229| (AB000617) LmrA [Bacillus subtilis] >g... 32 5.6
gi|1877305|emb|CAB07148| (Z92774) hypothetical protein Rv3574 [... 32 5.6
gi|2193949|emb|CAB09609| (Z96800) hypothetical protein Rv0328 [... 32 5.6
gi|2499947|sp|Q25566|PYR5_NAEGR URIDINE 5'-MONOPHOSPHATE SYNTHA... 31 7.3
gi|1176966|sp|P42105|YXAF_BACSU HYPOTHETICAL TRANSCRIPTIONAL RE... 31 7.3
gi|2496477|sp|Q50720|YY05_MYCTU HYPOTHETICAL 20.6 KD PROTEIN RV... 31 9.5
gi|3261713|emb|CAB06694| (Z86089) hypothetical protein Rv0273c ... 31 9.5
gi|2827577|emb|CAA16632| (AL021646) hypothetical protein Rv3167... 31 9.5
gi|417356|sp|P32265|NFXB_PSEAE TRANSCRIPTIONAL REGULATORY PROTE... 31 9.5
gi|383776|prf||1904215A nfxB gene [Pseudomonas aeruginosa] 31 9.5
>gi|2984376 (AE000776) hypothetical protein [Aquifex aeolicus]
Length = 192
Score = 58.9 bits (140), Expect = 3e-08
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
RD+I+K E G + T +LA IG S A I++ F S + I E I + I
Sbjct: 5 RDKILKVGAEVIAHEGLRRFTAKNLASKIGISDAAIFKHFSSMEEIAEEIIRRYTNECIL 64
Query: 238 SVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISES-----WPSVGVY 402
EAV TP E+L R+ + +E L + + I S S + +
Sbjct: 65 KTKEAVTLGKTPKEKLERILEGHIE----LLEKTKGIIPIICFEFSRSDKRSIKKRISEF 120
Query: 403 EDHLKALVLQIVRDGRESGEFERKTPLDETLNAI 504
+ +V++++ +G + GEF ++ET +I
Sbjct: 121 LNEYAQMVMEVIEEGIKIGEFRDDVDVEETAYSI 154
>gi|2984362 (AE000776) transcriptional regulator (TetR/AcrR family)
[Aquifex aeolicus]
Length = 192
Score = 51.9 bits (122), Expect = 4e-06
Identities = 24/87 (27%), Positives = 50/87 (56%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSII 231
D +++I+ +A + F + G+++TT+ D+AK +G ++ IYR F SK+ I + + + +
Sbjct: 13 DTKEKILSSALKLFSKKGFKETTIKDIAKEVGITEGAIYRHFTSKEEIIKSLLESITKEL 72
Query: 232 ITSVDEAVANASTPPEQLRRMFKTLVE 312
++ A+ T E L + TL++
Sbjct: 73 RHKLEVALQRGETDEEILESIVDTLID 99
>gi|5441765|emb|CAB46789.1| (AL096811) putative tetR transcriptional
regulator [Streptomyces coelicolor A3(2)]
Length = 251
Score = 51.9 bits (122), Expect = 4e-06
Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 8/187 (4%)
Frame = +1
Query: 55 VRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIII 234
V +++ AAT F GY++T+V ++ +A G +K +Y +F SK + + + L +
Sbjct: 66 VPQRLLAAATRLFAEQGYDRTSVQEIVEAAGVTKGALYHYFGSKDDLLHEVYARVLRLQQ 125
Query: 235 TSVDEAVANASTPPEQLRR-----MFKTLVEAGNYLFFHDRKLYDIAATSISESWPSVGV 399
+D A A+A P E+ R + T +E + R ++ ++ +
Sbjct: 126 ERLD-AFADADEPVEKRVRDAAADVVVTTIENLDDASIFFRSMHQLSPEKNKQVRAERRR 184
Query: 400 YEDHLKALVLQIVRDGRESGEFERKTPLDETLNAIYLVMRPYINPLMLQHNLD---NATE 570
Y + +AL + +G+ +G F ++ P D ++ + I+ L + D + E
Sbjct: 185 YHERFRAL----IEEGQRTGVFTKEIPADLVVDYHF----GSIHHLSTWYRPDGPLSPQE 236
Query: 571 ITTQLSNLILRSLAP 615
+ L+ L+LR+L P
Sbjct: 237 VADHLAGLLLRALRP 251
>gi|2370323|emb|CAB11596| (Z98943) hypothetical protein Rv1534
[Mycobacterium tuberculosis]
Length = 225
Score = 51.2 bits (120), Expect = 8e-06
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Frame = +1
Query: 19 SASQLRQPQDHDV---RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQ 189
SA + R D D RD+I+ AA F G+ TTV+D+AK G + IY +FDSK
Sbjct: 5 SARRRRAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKD 64
Query: 190 AIGEVICSNRLSIIITSVDEAVANASTPPE-QLRRMFKTLVEAGNYLFFHDRKLYDIAAT 366
+ + + + V +A E LR + + V+A F D+ +
Sbjct: 65 DLFHALMAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLL-- 122
Query: 367 SISESWPSVGVYEDHLKALVLQIVRD 444
+++ G +E+HL + + + D
Sbjct: 123 -FRDAYALGGRFEEHLGGIYERFIDD 147
>gi|5458882|emb|CAB50369.1| (AJ248287) hypothetical protein
[Pyrococcus abyssi]
Length = 200
Score = 50.8 bits (119), Expect = 1e-05
Identities = 38/128 (29%), Positives = 62/128 (47%), Gaps = 4/128 (3%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSII 231
D RD++VKAA F G+ +TTV D+ KA G +K Y +F SK+ I + + + +
Sbjct: 2 DTRDKLVKAAKRLFAEKGFYRTTVDDIVKAAGVAKGTFYLYFSSKEEIIKEVAMMAMPYM 61
Query: 232 ITS--VDEAVANA--STPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWPSVGV 399
S ++E + A E L + K+ E Y D + SI E+ PS+
Sbjct: 62 AFSKVINEGIVTARYKNLEEFLYALGKSFFE---YYSDPDLRTLFFHVVSIKEAIPSLKE 118
Query: 400 YEDHLKALVLQI 435
+ L + ++ I
Sbjct: 119 VHNELCSRLISI 130
>gi|1652289|dbj|BAA17212| (D90904) hypothetical protein
[Synechocystis sp.]
Length = 236
Score = 50.4 bits (118), Expect = 1e-05
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +1
Query: 25 SQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI-GE 201
S P + D+I+K A + FG GYE TT DLA+A ++ ++R+F +K+AI E
Sbjct: 33 STFTNPAEASTHDRILKGALKLFGTKGYEGTTTKDLAQAANVAEGTLFRYFTNKKAILVE 92
Query: 202 VICSNRLSI---IITSVDEAVANASTPPEQLRRMF 297
V + + I ++T + E + + RRMF
Sbjct: 93 VATAGWVEILTDLLTELSEMGSYKAIAQVMKRRMF 127
>gi|6688824|emb|CAB65288.1| (AJ250372) inactive regulatory protein
[Mycobacterium sp. GP1]
Length = 198
Score = 49.6 bits (116), Expect = 2e-05
Identities = 43/184 (23%), Positives = 81/184 (43%), Gaps = 9/184 (4%)
Frame = +1
Query: 55 VRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIII 234
VR +V+ T+ F GY + V D+ A K Y F+SK+A G + S +
Sbjct: 6 VRQHLVEKGTQVFLERGYSGSAVQDITAAAEVPKGSFYNHFESKEAFGGQVLQEFFSDLQ 65
Query: 235 TSVDEAVANASTPP-EQLRRMFKTLVEA--------GNYLFFHDRKLYDIAATSISESWP 387
++ + +AS PP +L+ F ++E GN+ L D+ T +
Sbjct: 66 RTISSTLEDASVPPVRRLQNYFAAIIETLDGQGCLIGNF-SVELSPLSDVVRTEL----- 119
Query: 388 SVGVYEDHLKALVLQIVRDGRESGEFERKTPLDETLNAIYLVMRPYINPLMLQHNLDNAT 567
+ ++E +K I+ +G+E+G R D + + + I + ++ N +
Sbjct: 120 -LRIFEQWVKPFQKCII-EGQETGSIRRDLAPDLLADFLIASWQGAILRMKIERNREPLD 177
Query: 568 EITTQLSNLILRS 606
+ T + +L S
Sbjct: 178 QFLTVVFEALLPS 190
>gi|6460213|gb|AAF11942.1|AE002070_4 (AE002070) transcriptional
repressor, TetR family [Deinococcus radiodurans]
Length = 198
Score = 48.0 bits (112), Expect = 7e-05
Identities = 24/78 (30%), Positives = 47/78 (59%), Gaps = 1/78 (1%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R+QI++ A++ F G+E ++D+A+ + S+ IY ++ S +AI +++ R+ +
Sbjct: 14 REQILEVASQLFIERGFENVKMADIAEHLQTSRPNIYTYYPSTEAILDILLERRMGDWLQ 73
Query: 238 SVDEAVA-NASTPPEQLRR 291
VD VA N+ PP+ + R
Sbjct: 74 EVDRRVADNSLFPPDDMLR 92
>gi|4240425 (AF080235) LanK [Streptomyces cyanogenus]
Length = 192
Score = 47.3 bits (110), Expect = 1e-04
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSII 231
+ RD+I A E F GYEKT++ ++A+ +G +KA +Y F +K+ I I +
Sbjct: 11 NTRDKIQSVALELFIERGYEKTSMREIAEGLGITKAALYYHFKAKEEILVAISQG----L 66
Query: 232 ITSVDEAVANASTPPEQL 285
VDE VA A T P L
Sbjct: 67 GGPVDELVAWARTQPRTL 84
>gi|2983006 (AE000683) putative protein [Aquifex aeolicus]
Length = 198
Score = 46.9 bits (109), Expect = 1e-04
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Frame = +1
Query: 64 QIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVI---CSNRLSIII 234
+I++ A + F + GY TT+ D+AKA+G S +Y +F SK+ + + I S + +
Sbjct: 14 EIMRVACKLFAQKGYHNTTMPDIAKALGMSVGNLYNYFSSKEELAKEIMLFTSKLVGERL 73
Query: 235 TSVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWPSVGVYEDHL 414
V+E+ + + L + F + L + K+Y + + D +
Sbjct: 74 RKVNESNLDFKEKTKLLVKSFLQIALEEPELINYFLKVYLVNTEVFKDDCKGFACVSDVV 133
Query: 415 KALVLQIVRDGRESGEFERKTPLDETLNAIYLVMRPYINPLMLQHN 552
+++ V DG E G F + + A +M P + ++ HN
Sbjct: 134 TEVMI-FVSDGVEKGIFRNQ----DFFTAFVTIMGP-LGGIVFLHN 173
>gi|4803692|emb|CAB42672.1| (AL049819) putative transcriptional
regulator [Streptomyces coelicolor]
Length = 204
Score = 46.9 bits (109), Expect = 1e-04
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGE 201
D RD+I+ A E F GYEKT+V +AKA G A ++ +F +K+ + E
Sbjct: 22 DTRDRILTTAREEFSERGYEKTSVRGIAKAAGVDPALVHHYFGTKEQVFE 71
>gi|2879769|emb|CAA68918| (Y07639) shows signature of
helix-turn-helix from TetR family [Listeria ivanovii]
Length = 295
Score = 46.9 bits (109), Expect = 1e-04
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
+ +I+K+A E F + GY KT+V D+ A SK Y +F SK+ + VI S++
Sbjct: 5 KQRIIKSAKEVFQKQGYLKTSVQDIVDAAEISKGTFYNYFTSKEELAIVIFKQEYSVLHQ 64
Query: 238 SVDEAVANASTPPEQLRRMFKTLV 309
++ +A + K ++
Sbjct: 65 RLEYTMALPGMKKDNFTECLKIII 88
>gi|6562775|emb|CAB62706.1| (AL133423) putative transcriptional
regulator [Streptomyces coelicolor A3(2)]
Length = 227
Score = 46.9 bits (109), Expect = 1e-04
Identities = 36/144 (25%), Positives = 61/144 (42%)
Frame = +1
Query: 4 TKAYTSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDS 183
T S LR+ + RD ++++A E F GYE+TTV D+A+A S+ +R+F S
Sbjct: 12 TAPAASRPGLRELKKQRTRDLLLRSALELFTERGYEETTVDDIAEAADVSQRTFFRYFAS 71
Query: 184 KQAIGEVICSNRLSIIITSVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAA 363
K+ + S + +V + PPE+ D
Sbjct: 72 KEDAAFFVARLAESHFVRAV------LARPPEEAP--------------------LDALR 105
Query: 364 TSISESWPSVGVYEDHLKALVLQI 435
+++ESW ++G + L L L +
Sbjct: 106 RALAESWSTIGEAVEQLVPLELHM 129
>gi|4981571|gb|AAD36107.1|AE001764_10 (AE001764) transcriptional
regulator, TetR family [Thermotoga maritima]
Length = 200
Score = 46.1 bits (107), Expect = 3e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
RD I+KAA E FG+ GY++ T ++A+ G +K I+ +F +K+ +
Sbjct: 5 RDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEEL 50
>gi|6457735|gb|AAF09664.1|AE001870_3 (AE001870) transcriptional
regulator, TetR family [Deinococcus radiodurans]
Length = 197
Score = 46.1 bits (107), Expect = 3e-04
Identities = 28/85 (32%), Positives = 44/85 (50%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R QI+ A F G+E TV+DLA + S+ IY +F S +AI + + RL+ ++
Sbjct: 14 RQQILDMAAGLFVERGFESVTVADLAHELQTSRPTIYSYFPSTEAILDALLQQRLAGLLQ 73
Query: 238 SVDEAVANASTPPEQLRRMFKTLVE 312
+D + AS PE L ++E
Sbjct: 74 RLDPLL--ASLRPESLTEQQSHVIE 96
>gi|418449|sp|P32398|YHGD_BACSU HYPOTHETICAL TRANSCRIPTIONAL
REGULATOR IN HEMY-GLTT INTERGENIC REGION (ORFA)
>gi|421521|pir||E47045 orfA 3' of hemY - Bacillus
subtilis >gi|143046 (M97208) ORFA [Bacillus subtilis]
>gi|2226233|emb|CAA74521.1| (Y14083) hypothetical
transcriptional regulator [Bacillus subtilis]
>gi|2633351|emb|CAB12855| (Z99109) alternate gene name:
yixD; similar to transcriptional regulator (TetR/AcrR
family) [Bacillus subtilis]
Length = 191
Score = 45.7 bits (106), Expect = 3e-04
Identities = 38/159 (23%), Positives = 72/159 (44%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSII 231
D + I++AAT+ F ++GY+ TT+ +AK K IY FF +K+ + + I + L +
Sbjct: 4 DRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLKEM 63
Query: 232 ITSVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWPSVGVYEDH 411
DEA+ + E + R ++E + + A + E
Sbjct: 64 KQKADEAMEPSLPFHENVHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKMERS 123
Query: 412 LKALVLQIVRDGRESGEFERKTPLDETLNAIYLVMRPYI 528
+ + + + DG +SG + P D L A +++++ YI
Sbjct: 124 ILSYIKSKIEDGIKSGAIK---PCDPELTA-FVMLKLYI 158
>gi|5813900|gb|AAD52054.1|AF086783_2 (AF086783) IcaR [Staphylococcus
aureus]
Length = 186
Score = 45.7 bits (106), Expect = 3e-04
Identities = 20/49 (40%), Positives = 32/49 (64%)
Frame = +1
Query: 55 VRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGE 201
++D+I+ A F GY+ TT+ D+AK++ KA +Y FDSK++I E
Sbjct: 1 MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYE 49
>gi|5199319|gb|AAD40801.1|AF145049_2 (AF145049) gamma-butyrolactone
receptor protein TylP [Streptomyces fradiae]
Length = 226
Score = 44.1 bits (102), Expect = 0.001
Identities = 21/66 (31%), Positives = 36/66 (53%)
Frame = +1
Query: 34 RQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICS 213
RQ + R IV AA F GYE TT++++ K G +K +Y F SK+ + + + +
Sbjct: 3 RQERAAQTRRTIVAAAAAVFDELGYEATTIAEILKRSGVTKGALYFHFTSKEQLAQEVLT 62
Query: 214 NRLSII 231
++L +
Sbjct: 63 SQLRAV 68
>gi|1655820 (U58281) TetR homologue [Streptomyces roseosporus]
Length = 179
Score = 44.1 bits (102), Expect = 0.001
Identities = 27/107 (25%), Positives = 49/107 (45%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R ++ AA G E T LA+ GF+++ +Y +F S+ A+ E +C+ +
Sbjct: 3 RGALLDAARSLLSEGGTEALTFPALAERTGFARSSVYEYFRSRAAVVEELCAVDFPVWAA 62
Query: 238 SVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISE 378
V+ A+ A TP ++ + ++ DR+ + A S SE
Sbjct: 63 EVENAMQRAETPEAKIEAYVRRQLD-----LVGDRRHRAVVAISASE 104
>gi|4539188|emb|CAB39717.1| (AL049485) putative regulatory protein
[Streptomyces coelicolor]
Length = 223
Score = 44.1 bits (102), Expect = 0.001
Identities = 38/140 (27%), Positives = 63/140 (44%), Gaps = 4/140 (2%)
Frame = +1
Query: 67 IVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSVD 246
I+ A E F +GY T+V ++A +G + +Y +++KQA+ + + ++
Sbjct: 27 ILVHAMEAFNEHGYHGTSVRNIAGRVGVTVPALYYHYENKQALLATLLETSIKDVLDRCR 86
Query: 247 EAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWPS----VGVYEDHL 414
A A A P L R F +VE+ L+ R+ T I P+ D+L
Sbjct: 87 AAAAEAG--PAPLAR-FCGMVES-IVLYMAHRRSLAFLDTEIRSLEPANRARYVALRDYL 142
Query: 415 KALVLQIVRDGRESGEFERKTPLD 486
+ ++L V GR G F P D
Sbjct: 143 QHMLLDTVEAGRAEGVFTTDIPAD 166
>gi|6458812|gb|AAF10653.1|AE001958_7 (AE001958) transcriptional
regulator, TetR family [Deinococcus radiodurans]
Length = 233
Score = 43.8 bits (101), Expect = 0.001
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 34 RQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSK 186
RQ QD R +I +AA E F R G + + D+A+A S+ +YR+F SK
Sbjct: 5 RQEQDEARRTRIARAAFELFARTGLDSVSAQDIARAAFVSRTNLYRYFPSK 55
>gi|282575|pir||S27686 tcmR protein - Streptomyces glaucescens
>gi|153489 (M80674) tetracenomycin C resistance and
export gene repressor [Streptomyces glaucescens]
Length = 227
Score = 43.4 bits (100), Expect = 0.002
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +1
Query: 4 TKAYTSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDS 183
T++ + LRQ + RDQ+++ A E F GYE TTV +A+A+ +R F S
Sbjct: 12 TRSTPNGPGLRQRKLRRTRDQLIREALELFLAQGYEHTTVEQIAEAVEVHPRTFFRHFAS 71
Query: 184 KQAI 195
K+ +
Sbjct: 72 KEEV 75
>gi|730916|sp|P39885|TCMR_STRGA TETRACENOMYCIN C TRANSCRIPTIONAL
REPRESSOR >gi|282576|pir||B41901 tetracenomycin C
transcriptional repressor TcmR - Streptomyces
glaucescens
Length = 226
Score = 43.4 bits (100), Expect = 0.002
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +1
Query: 4 TKAYTSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDS 183
T++ + LRQ + RDQ+++ A E F GYE TTV +A+A+ +R F S
Sbjct: 11 TRSTPNGPGLRQRKLRRTRDQLIREALELFLAQGYEHTTVEQIAEAVEVHPRTFFRHFAS 70
Query: 184 KQAI 195
K+ +
Sbjct: 71 KEEV 74
>gi|5420013|emb|CAB46405.1| (AL096743) putative transcriptional
regulator [Streptomyces coelicolor]
Length = 202
Score = 43.0 bits (99), Expect = 0.002
Identities = 36/153 (23%), Positives = 67/153 (43%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R++++ A + F +G E ++ D+A+ G +YR F ++QA+ E RL I
Sbjct: 27 RERLLAVAAQAFAEHG-EGASLDDIARRAGVGVGTLYRHFPTRQALLEAAYLERLEAIAA 85
Query: 238 SVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWPSVGVYEDHLK 417
D V A+ PP + + G R L + T+++ P+ G D ++
Sbjct: 86 RAD--VIAAARPPGAALMAWLDELAVG---MLQVRGLKALLGTAVTGGGPACG---DCVR 137
Query: 418 ALVLQIVRDGRESGEFERKTPLDETLNAIYLVM 516
++VR +E+G E L ++ V+
Sbjct: 138 GAATRLVRAAQEAGALRADVEPVEVLRLLHGVV 170
>gi|6318603|gb|AAF06961.1| (AF156161) TarA [Streptomyces tendae]
Length = 220
Score = 42.2 bits (97), Expect = 0.004
Identities = 21/61 (34%), Positives = 35/61 (56%), Gaps = 2/61 (3%)
Frame = +1
Query: 43 QDHDVRDQ--IVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSN 216
QD VR + +++AA F GY T+S++ K G +K +Y FDSK A+ + +
Sbjct: 4 QDRAVRTRRAVLRAAAAVFAERGYAAATISEILKRAGVTKGALYFHFDSKAALAQGVLQE 63
Query: 217 RLS 225
+L+
Sbjct: 64 QLT 66
>gi|3201567|dbj|BAA28747| (AB000384) CprA [Streptomyces coelicolor]
Length = 215
Score = 41.8 bits (96), Expect = 0.005
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +1
Query: 34 RQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVI 207
RQ + R IV+AA + F R+GYE T++S++ G +K +Y F +K+ + I
Sbjct: 3 RQLRAERTRATIVRAAADLFDRHGYESTSLSEIVAHAGVTKGALYFHFAAKEDLAHAI 60
>gi|1770039|emb|CAA99572.1| (Z75208) hypothetical protein [Bacillus
subtilis] >gi|2635320|emb|CAB14815| (Z99118) similar to
transcriptional regulator (TetR/AcrR family) [Bacillus
subtilis]
Length = 194
Score = 41.8 bits (96), Expect = 0.005
Identities = 22/74 (29%), Positives = 38/74 (50%)
Frame = +1
Query: 64 QIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSV 243
QI+ AA E GY ++ VS +AK G + IY +F +K+ I + ++ I +
Sbjct: 10 QIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERM 69
Query: 244 DEAVANASTPPEQL 285
+E + +T E+L
Sbjct: 70 EEDIKEKATAKEKL 83
>gi|2815319|emb|CAA16443| (AL021529) putative transcriptional
regulator [Streptomyces coelicolor]
Length = 198
Score = 41.4 bits (95), Expect = 0.007
Identities = 22/73 (30%), Positives = 38/73 (51%)
Frame = +1
Query: 64 QIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSV 243
Q++ AA E G E T +A G ++ IYR+F+S + E++ + I +V
Sbjct: 19 QLIDAAEELLEEGGAEALTAGAVAARAGIARNSIYRYFNSIDDLLELVVTREFPAWIDAV 78
Query: 244 DEAVANASTPPEQ 282
++A+A +TP Q
Sbjct: 79 EQAIAAETTPAAQ 91
>gi|2791408|emb|CAA16002| (AL021184) hypothetical protein Rv1474c
[Mycobacterium tuberculosis]
Length = 187
Score = 41.4 bits (95), Expect = 0.007
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
R QI+ A F YGY+K TV L +AIG S+ I+ F K A+
Sbjct: 13 RRQILDGARRCFAEYGYDKATVRRLEQAIGMSRGAIFHHFRDKDAL 58
>gi|1877288|emb|CAB07159| (Z92774) hypothetical protein Rv3557c
[Mycobacterium tuberculosis]
Length = 200
Score = 41.0 bits (94), Expect = 0.009
Identities = 35/143 (24%), Positives = 62/143 (42%), Gaps = 5/143 (3%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R ++++ A F G TTV D+A G +Y F SK+ + + + L +
Sbjct: 12 RGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFA 71
Query: 238 SVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRK--LYDIAATSISESWPSVGVYEDH 411
+ V + + P E+L+ +F EA + H + +Y A ++ S P ED
Sbjct: 72 RYRDIVDSTANPLERLQGLFMASFEA---IEHHHAQVVIYQDEAQRLA-SQPRFSYIEDR 127
Query: 412 LK---ALVLQIVRDGRESGEFERKTPLD 486
K + + ++ G E G F +D
Sbjct: 128 NKQQRKMWVDVLNQGIEEGYFRPDLDVD 155
>gi|1174822|sp|P29280|TTK_HAEIN TTK PROTEIN HOMOLOG
>gi|1074577|pir||D64162 hypothetical protein (crp 5'
region) - Haemophilus influenzae >gi|1573980 (U32776)
transcriptional regulator (ttk) [Haemophilus influenzae
Rd]
Length = 218
Score = 41.0 bits (94), Expect = 0.009
Identities = 18/70 (25%), Positives = 41/70 (57%)
Frame = +1
Query: 103 GYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSVDEAVANASTPPEQ 282
G E+ T + LAK +G S+A +YR+F SK + E + + S +++ + ++ N + +
Sbjct: 48 GMERMTTARLAKEVGVSEAALYRYFPSKTKMFEALIEHIESTLLSRITASMRNETQTMNR 107
Query: 283 LRRMFKTLVE 312
+ + +T+++
Sbjct: 108 IHDILQTILD 117
>gi|2978430 (U43366) IcaR [Staphylococcus epidermidis]
Length = 185
Score = 41.0 bits (94), Expect = 0.009
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +1
Query: 55 VRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
++D+I+ A F GY+ TT+ D++K++ KA +Y +D+K+ I
Sbjct: 1 MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEI 47
>gi|6136688|sp|O31500|YERO_BACSU HYPOTHETICAL TRANSCRIPTIONAL
REGULATOR IN OPUE-RAPH INTERGENIC REGION
>gi|2632984|emb|CAB12490| (Z99107) similar to
transcriptional regulator (TetR/AcrR family) [Bacillus
subtilis]
Length = 289
Score = 39.9 bits (91), Expect = 0.019
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 49 HDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSI 228
++ +++I+K + F + G+ TT+ ++A G SK Y F SK+A+ C + +
Sbjct: 2 NEKKERIIKTSIRLFAKKGFAATTIQEIASECGISKGAFYLHFKSKEALLLSACEYYIGM 61
Query: 229 IITSVDEAVAN-ASTPPEQL 285
+ + + A PP+++
Sbjct: 62 SMNKMKNIEEDLAGKPPKEV 81
>gi|4210936|gb|AAD12171.1| (AF055922) butyrolactone receptor
[Streptomyces fradiae]
Length = 224
Score = 39.9 bits (91), Expect = 0.019
Identities = 21/66 (31%), Positives = 36/66 (53%)
Frame = +1
Query: 34 RQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICS 213
RQ + R IV AA F GYE TT++++ K G +K +Y F SK+ + + + +
Sbjct: 3 RQERAAQTRRTIVAAAA-VFDELGYEATTIAEILKRSGVTKGALYFHFTSKEQLAQEVLT 61
Query: 214 NRLSII 231
++L +
Sbjct: 62 SQLRAV 67
>gi|2183255 (AF002133) transcriptional regulator [Mycobacterium
avium]
Length = 82
Score = 39.9 bits (91), Expect = 0.019
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
R QI+ A F +GY+K TV L +AIG S+ I+ F K A+
Sbjct: 13 RRQILDGARRCFAEFGYDKATVRRLEQAIGMSRGAIFHHFRDKDAL 58
>gi|6459139|gb|AAF10954.1|AE001984_4 (AE001984) transcriptional
regulator, TetR family [Deinococcus radiodurans]
Length = 196
Score = 39.9 bits (91), Expect = 0.019
Identities = 24/93 (25%), Positives = 43/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 7 KAYTSASQLRQPQDHDVR-DQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDS 183
+ Y++ RQ D R +QI+ A F G+ + + ++A AIG S+ +Y +F S
Sbjct: 8 RLYSAPMSPRQRLSSDTRREQILDTALGLFIEQGFAQVSPREIAAAIGTSRPNVYTYFPS 67
Query: 184 KQAIGEVICSNRLSIIITSVDEAVANASTPPEQL 285
+AI + + + +D A P +L
Sbjct: 68 TEAILDTLLERLTAQYFAELDRRFAEVKRPDARL 101
>gi|2622161 (AE000877) transcriptional regulator related protein
[Methanobacterium thermoautotrophicum]
Length = 208
Score = 39.5 bits (90), Expect = 0.025
Identities = 17/58 (29%), Positives = 36/58 (61%)
Frame = +1
Query: 22 ASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
A R+ + R+QI++AA + F GY++ T+ ++A+ +KA +Y +F +K+++
Sbjct: 2 APSRRERERERRREQIIRAAEKAFFARGYDRVTMDEIAEEAEVNKALLYYYFKNKESL 59
>gi|2633161|emb|CAB12666| (Z99108) similar to hypothetical proteins
[Bacillus subtilis] >gi|2804522|dbj|BAA24458| (D85082)
YfiR [Bacillus subtilis]
Length = 205
Score = 39.5 bits (90), Expect = 0.025
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +1
Query: 64 QIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSV 243
+I++AA F R G+E TT+ D+ + GFS+ +Y +F S + + I L + +
Sbjct: 16 EILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKL 75
Query: 244 DEAVANAS 267
D++ + S
Sbjct: 76 DKSAEHQS 83
>gi|4585599|emb|CAB40867.1| (AL049628) putative tetR-family
regulator [Streptomyces coelicolor]
Length = 195
Score = 39.1 bits (89), Expect = 0.033
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = +1
Query: 34 RQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVI-- 207
+Q + D R +I A F GYEKT++ ++A+++ +KA +Y F +K+ I I
Sbjct: 6 QQRRRGDTRQRIQDVALGLFAEQGYEKTSLREIAESLDVTKAALYYHFKTKEEILVSIFE 65
Query: 208 -CSNRLSIIITSVDEAVANASTPPEQLRRMFKTLVEA 315
S L +I E T E +RR + L A
Sbjct: 66 DLSRPLEDLIEWGREQPHTLETKQEIIRRYSEALAGA 102
>gi|1934613 (U93874) regulatory protein [Bacillus subtilis]
>gi|2635163|emb|CAB14659| (Z99117) similar to
transcriptional regulator (TetR/AcrR family) [Bacillus
subtilis]
Length = 194
Score = 39.1 bits (89), Expect = 0.033
Identities = 27/95 (28%), Positives = 45/95 (46%), Gaps = 4/95 (4%)
Frame = +1
Query: 61 DQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITS 240
D I+KA+ F G++ TT+ +A+ IYR+FDSK+ + V+ +
Sbjct: 10 DMIMKASVSLFTERGFDATTIPMIAERAHVGTGTIYRYFDSKETLVNVLFQESIQRFTEK 69
Query: 241 VDEAVANASTPPEQLRRMFKTLV----EAGNYLFFHDRK 345
+ + V+ E +F LV E+ LFF + K
Sbjct: 70 LKQDVSELPV-REGFHHVFCCLVQFTKESDYALFFLETK 107
>gi|2495431|sp|Q11063|YC55_MYCTU HYPOTHETICAL TRANSCRIPTIONAL
REGULATOR RV1255C >gi|1480331|emb|CAB00897| (Z77137)
hypothetical protein Rv1255c [Mycobacterium
tuberculosis]
Length = 202
Score = 39.1 bits (89), Expect = 0.033
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +1
Query: 61 DQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITS 240
D+I+ AA F + ++++AKA G S+A +YR+FDS++A+ +
Sbjct: 17 DRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRLGRE 76
Query: 241 VDEAVANASTPPEQL 285
+ +A+ P E+L
Sbjct: 77 IMVKIADVVEPAERL 91
>gi|4539185|emb|CAB39714.1| (AL049485) putative regulatory protein
[Streptomyces coelicolor]
Length = 404
Score = 38.7 bits (88), Expect = 0.043
Identities = 19/69 (27%), Positives = 34/69 (48%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R IV+AA F GY + ++ ++A +G + A +YR F +K A+ ++
Sbjct: 32 RQLIVEAAGRVFSERGYHRASMEEIAAGVGITAAALYRHFPNKYALFAECADVMAQGLVA 91
Query: 238 SVDEAVANA 264
++DE A
Sbjct: 92 ALDEVPPGA 100
>gi|4154069|emb|CAA22722| (AL035161) putative transcriptional
regulator [Streptomyces coelicolor]
Length = 272
Score = 38.7 bits (88), Expect = 0.043
Identities = 25/75 (33%), Positives = 39/75 (51%)
Frame = +1
Query: 55 VRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIII 234
+R ++ AA E F GYE TTV ++A G ++ +R F SK+ E I + ++
Sbjct: 32 MRRELAAAAMELFATKGYEATTVDEIAAQAGVARRTFFRHFRSKE---EAIFPDHDDTLV 88
Query: 235 TSVDEAVANASTPPE 279
+ EAV NA+ E
Sbjct: 89 RA--EAVLNAAPAHE 101
>gi|5912516|emb|CAB56142.1| (AL117669) putative transcriptional
regulator [Streptomyces coelicolor A3(2)]
Length = 188
Score = 38.3 bits (87), Expect = 0.056
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 46 DHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
D ++ +AA E + +GY+ TV+D+A+ G ++ +R+F K+ +
Sbjct: 5 DPGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREV 54
>gi|6002942|gb|AAF00218.1|AF164961_7 (AF164961) regulatory protein
[Streptomyces fradiae]
Length = 187
Score = 37.9 bits (86), Expect = 0.074
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
R +I + A E F GYEKT++ +A+ + +K IY F +K+AI
Sbjct: 8 RQKIQEVALELFVEQGYEKTSLRGIAERLNVTKPAIYYHFQTKEAI 53
>gi|1881364|dbj|BAA19391| (AB001488) FUNCTION UNKNOWN. [Bacillus
subtilis] >gi|2632858|emb|CAB12365| (Z99106) similar to
hypothetical proteins [Bacillus subtilis]
>gi|2632871|emb|CAB12377| (Z99107) similar to
hypothetical proteins [Bacillus subtilis]
Length = 195
Score = 37.9 bits (86), Expect = 0.074
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
R +++KAA F G+ VS++ K GF++ Y +F SK+AI
Sbjct: 9 RKRLLKAAANEFSVRGFHDAKVSEIVKKAGFTQPSFYLYFQSKEAI 54
>gi|3261702|emb|CAB06537| (Z84498) hypothetical protein Rv1963c
[Mycobacterium tuberculosis]
Length = 406
Score = 37.9 bits (86), Expect = 0.074
Identities = 47/193 (24%), Positives = 83/193 (42%), Gaps = 4/193 (2%)
Frame = +1
Query: 34 RQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICS 213
R+P+D + QI+ A F G+ + D+A+A G + +YR +D+KQA+
Sbjct: 10 RRPKDR--KKQILDQAVGLFIERGFHSVKLEDIAEAAGVTARALYRHYDNKQAL------ 61
Query: 214 NRLSIIITSVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWPSV 393
+ EA+ + RR+ + E D L D+ A +++
Sbjct: 62 ---------LAEAIRTGQDQYQSARRLTEGETEPTPRPLNAD--LEDLIAAAVAS----- 105
Query: 394 GVYEDHLKALVLQIVRDGRESGEFERKTPLDETLNAIYLVMRP----YINPLMLQHNLDN 561
+AL + R+ R E +R T + +NAI MR + L QH+
Sbjct: 106 -------RALTVLWQREARYLNEDDR-TAVRRRINAIVAGMRDSVLLEVPDLSPQHSELR 157
Query: 562 ATEITTQLSNLILRSLA 612
A +++ L++L SL+
Sbjct: 158 AWAVSSTLTSLGRHSLS 174
Score = 34.0 bits (76), Expect = 1.1
Identities = 34/119 (28%), Positives = 54/119 (44%), Gaps = 5/119 (4%)
Frame = +1
Query: 61 DQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITS 240
+ ++ A F GY S++ K G + +YR F SKQAI L +I
Sbjct: 221 ETLLAAGARLFRAQGYPAVNTSEIGKGAGIAGPGLYRSFSSKQAI--------LDALIRR 272
Query: 241 VDE----AVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISE-SWPSVGVYE 405
+DE A +Q + + LV+ G+ D D+ A S++E S SV V +
Sbjct: 273 LDEWRCLECIRALRANQQAAQRLRGLVQ-GHVRISLDAP--DLVAVSVTELSHASVEVRD 329
Query: 406 DHLK 417
+L+
Sbjct: 330 GYLR 333
>gi|2632999|emb|CAB12505| (Z99107) similar to hypothetical proteins
[Bacillus subtilis]
Length = 378
Score = 37.1 bits (84), Expect = 0.13
Identities = 22/83 (26%), Positives = 41/83 (48%)
Frame = +1
Query: 67 IVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSVD 246
++ A E FG YGYE T++ DL +G ++ +Y + +K+ + + L +V
Sbjct: 196 VLHRAIEVFGEYGYEGTSLQDLLSHLGIARQSLYDTYGTKRDLFLSAVKSYLEGKNAAVM 255
Query: 247 EAVANASTPPEQLRRMFKTLVEA 315
E + + E +R +F+ V A
Sbjct: 256 ERLEAPGSVKEAIRDIFQEGVNA 278
>gi|6469265|emb|CAB61726.1| (AL133220) putative TetR-family
transcriptional regulator. [Streptomyces coelicolor
A3(2)]
Length = 215
Score = 36.7 bits (83), Expect = 0.17
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R I AA G GY KTT+ +A G K IYR++ SK +V+ L +
Sbjct: 28 RQAIYDAALALVGEVGYPKTTIEGIAARAGVGKQTIYRWWSSK---ADVLLEAFLDLGER 84
Query: 238 SVDEAVANASTPPE 279
V+ A A T P+
Sbjct: 85 LVEAAGEEAYTIPD 98
>gi|6434739|emb|CAB61186.1| (AL132973) putative TetR-family
transcriptional regulator. [Streptomyces coelicolor
A3(2)]
Length = 205
Score = 36.7 bits (83), Expect = 0.17
Identities = 38/185 (20%), Positives = 84/185 (44%), Gaps = 9/185 (4%)
Frame = +1
Query: 61 DQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFF-DSKQAIGEVICSNRLSIIIT 237
D ++ A + G +TT++D+A+ G S+ +YR + D + +G+++ +++
Sbjct: 18 DTVLDAVRDCVLAVGVRRTTMTDVARRAGVSRMTLYRRWPDVRSLVGDLMTREWIAVATG 77
Query: 238 SVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWPSV----GVYE 405
+V E + + + + + F RK+ D+ + P V G +
Sbjct: 78 AVTEPGQDTDARSRMVEGLVAGVAAFRAHPLF--RKIVDVDPELL---LPYVLDRRGASQ 132
Query: 406 DHLKALVLQIVRDGRESGEFERKTPLDETLNAIYLVMRPYINPLMLQHNLDNA----TEI 573
+ L L+ + +G G R+T ++ LV++ + L + D+A +
Sbjct: 133 EALLELLADSLEEGHADGSV-RRTHTGRQARSVLLVVQSFALSLRTMADEDDAELTPAAL 191
Query: 574 TTQLSNLILRSLAP 615
+L ++ R+LAP
Sbjct: 192 LAELRTILERTLAP 205
>gi|2618838 (AF017113) YvkB [Bacillus subtilis]
>gi|2636046|emb|CAB15537.1| (Z99122) similar to
transcriptional regulator (TetR/AcrR family) [Bacillus
subtilis]
Length = 189
Score = 36.0 bits (81), Expect = 0.29
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 64 QIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLS 225
+I+ AA + + GY TT ++A+ S+A I+R F +KQ + E + S S
Sbjct: 7 RILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLSQHSS 60
>gi|5002555|gb|AAD37459.1| (AF074603) putative transcriptional
repressor; NonG [Streptomyces griseus subsp. griseus]
Length = 242
Score = 35.6 bits (80), Expect = 0.37
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 55 VRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQ 189
+R+ + +AA F G+E+TTV D+ G + +R+F SK+
Sbjct: 13 MREVLAQAAFRLFLERGFERTTVDDIVALAGVGRRSFFRYFPSKE 57
>gi|1805455|dbj|BAA09017| (D50453) ycnC [Bacillus subtilis]
>gi|2632686|emb|CAB12193| (Z99106) similar to
transcriptional regulator (TetR/AcrR family) [Bacillus
subtilis]
Length = 292
Score = 35.6 bits (80), Expect = 0.37
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQ-AIGEVICSNRLSI 228
D + I+ AA + F + ++ +A+ SKA IY+ F SK+ + E++ N+ +
Sbjct: 3 DKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLFQSKEDLLLELLSFNQKQM 62
Query: 229 IITSVDEAVANASTPPEQLRRMFKTLVEA--GNYLFFH 336
+ + A TP E+L + K +E N FF+
Sbjct: 63 VAAASRLQENTALTPEERLTQKVKMELEGFRRNQQFFN 100
>gi|401566|sp|P31676|ENVR_ECOLI POTENTIAL ACREF/ENVCD OPERON
REPRESSOR >gi|510828|emb|CAA41015| (X57948) potential
repressor envR [Escherichia coli]
>gi|606205|gb|AAA58068.1| (U18997) ORF_f220 [Escherichia
coli] >gi|1789664 (AE000405) putative transcriptional
regulator [Escherichia coli]
Length = 220
Score = 35.6 bits (80), Expect = 0.37
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSK 186
R ++++ A F ++G KTT++D+A A ++ IY F++K
Sbjct: 13 RQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENK 55
>gi|2193923|emb|CAB09599| (Z96800) hypothetical protein Rv0302
[Mycobacterium tuberculosis]
Length = 210
Score = 35.6 bits (80), Expect = 0.37
Identities = 17/54 (31%), Positives = 27/54 (49%)
Frame = +1
Query: 34 RQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
+Q Q R+ I+ A GY T++SD+ A G + + IY F SK+ +
Sbjct: 8 KQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGV 61
>gi|2342430|dbj|BAA21859| (AB001683) FarA [Streptomyces sp.]
Length = 221
Score = 35.2 bits (79), Expect = 0.49
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGE 201
R I+ AA F GY+ T+S++ G +K +Y F SK+ + +
Sbjct: 11 RQAILSAAARVFDERGYQAATISEILTVAGVTKGALYFHFQSKEDLAQ 58
>gi|5123660|emb|CAB45349.1| (AL079345) putative transcriptional
regulator [Streptomyces coelicolor A3(2)]
Length = 230
Score = 34.8 bits (78), Expect = 0.64
Identities = 18/68 (26%), Positives = 39/68 (56%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R+++++AA E F G + +S +A+ G A +YR F ++ ++ ++L++
Sbjct: 31 RERVLEAAREVFSARGVD-APMSAVARRAGVGVATLYRRFPTRSSLVAAAFDDQLTVCAA 89
Query: 238 SVDEAVAN 261
+ DEA+A+
Sbjct: 90 AFDEALAD 97
>gi|6460190|gb|AAF11921.1|AE002068_4 (AE002068) transcriptional
regulator, TetR family [Deinococcus radiodurans]
Length = 197
Score = 34.8 bits (78), Expect = 0.64
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSK-QAIGEVI--CSNRLSI 228
R+QI A+ F GY T++ DLA +G +Y K + + E++ S +
Sbjct: 9 REQIHDVASRLFSERGYHATSMRDLAGQLGMQGGSLYAHISGKEELLVEIVRGASQQFDE 68
Query: 229 IITSVDEAVANASTPPEQLRR-MFKTL-VEAGNY----LFFHDRKLYDIAATSISESWPS 390
+ S+ + A E+LR MF+ + V A N +FFH+ K +E +
Sbjct: 69 ALFSLRDVNLPAD---EKLREAMFRHIQVVADNMDSATVFFHEWKHLS------AEPYAQ 119
Query: 391 VGVYEDHL----KALVLQIVRDGRESGEFERKTPLDETLNAI 504
V + D + + LV Q VRDG + + + + L+A+
Sbjct: 120 VVAWRDTIDIFYRDLVAQGVRDGTFRADLDVRAAANLILSAV 161
>gi|2827570|emb|CAA16625| (AL021646) hypothetical protein Rv3160c
[Mycobacterium tuberculosis]
Length = 213
Score = 34.8 bits (78), Expect = 0.64
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 64 QIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
+I+ AA E GY T+ D+A A+G + IY+ F +K+ I
Sbjct: 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDI 57
>gi|5852322|gb|AAD54003.1|AF088856_2 (AF088856) hypothetical protein
[Vogesella indigofera]
Length = 228
Score = 34.8 bits (78), Expect = 0.64
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +1
Query: 61 DQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
D AA F + GY T++ DL G S++ +Y F+SK +
Sbjct: 44 DDAADAAMHVFWQKGYAATSIQDLVDGTGLSRSSLYNTFESKHGL 88
>gi|1881339|dbj|BAA19366| (AB001488) PROBABLE TRANSCRIPTIONAL
REGULATOR, SIMILAR TO REGULATOR OF ANTIBIOTIC TRANSPORT
COMPLEXES IN STREPTOMYCES HYGROSCOPICUS. [Bacillus
subtilis] >gi|2632832|emb|CAB12339| (Z99106) similar to
transcriptional regulator (TetR/AcrR family) [Bacillus
subtilis]
Length = 198
Score = 34.4 bits (77), Expect = 0.84
Identities = 17/57 (29%), Positives = 31/57 (53%)
Frame = +1
Query: 25 SQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
S+ +P+D I+ AA + G++ TV +A+ SKA IY+++ +K A+
Sbjct: 3 SKRGRPRDEGTHKAILSAAYDLLLEKGFDAVTVDKIAERAKVSKATIYKWWSNKAAV 59
>gi|5763889|emb|CAB53270.1| (AL109972) putative tetR-family
transcriptional regulator [Streptomyces coelicolor
A3(2)]
Length = 204
Score = 34.0 bits (76), Expect = 1.1
Identities = 31/136 (22%), Positives = 55/136 (39%), Gaps = 3/136 (2%)
Frame = +1
Query: 52 DVRDQIVKAATE-YFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSI 228
DVR++ + E GY+ TV D+A+ G ++ +Y +F SK + + + +
Sbjct: 18 DVRERAILDTCEALLADKGYDAMTVGDIAQGAGITRGALYFYFGSKHEVVAALVARTVE- 76
Query: 229 IITSVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAAT--SISESWPSVGVY 402
+ A P + + VE N R D++ T I E W
Sbjct: 77 HLWERSRVTAQTDEPRQAIAAAMHRTVELWNEHGLVMRTAIDLSLTVPEIGELWSHTA-- 134
Query: 403 EDHLKALVLQIVRDGRESG 459
+ + A+ + R G +SG
Sbjct: 135 DLFIAAITAVLERAGIQSG 153
>gi|5441773|emb|CAB46797.1| (AL096811) putative transcriptional
regulator [Streptomyces coelicolor A3(2)]
Length = 215
Score = 34.0 bits (76), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (51%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
D +++ AA E F GY TT D+A G S A +Y + +K+ +
Sbjct: 21 DAARRLLVAAVEAFAERGYHATTTRDIAGRAGMSPAALYIHYKTKEEL 68
>gi|6644157|gb|AAF20928.1|AF207529_2 (AF207529) PhlF [Pseudomonas
fluorescens]
Length = 200
Score = 34.0 bits (76), Expect = 1.1
Identities = 19/64 (29%), Positives = 31/64 (47%)
Frame = +1
Query: 4 TKAYTSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDS 183
T + +S LR P H I+ + E GY ++ +A+ G SK IYR++ +
Sbjct: 4 TPSRSSIGSLRSPHTHKA---ILTSTIEILKECGYSGLSIESVARRAGASKPTIYRWWTN 60
Query: 184 KQAI 195
K A+
Sbjct: 61 KAAL 64
>gi|2245327|emb|CAB10566| (Z97345) hypothetical protein Rv1776c
[Mycobacterium tuberculosis]
Length = 186
Score = 33.6 bits (75), Expect = 1.4
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 61 DQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITS 240
++I AAT+ RYG + LA+ + S+A IYR K I +V+ + + I
Sbjct: 18 ERIYAAATDLITRYGLNALDIDKLAREVHCSRATIYRRAGGKAQIRDVVLTRAAARIADG 77
Query: 241 V 243
V
Sbjct: 78 V 78
>gi|1163923|gb|AAB48110.1| (U41818) PhlF [Pseudomonas fluorescens]
Length = 202
Score = 33.2 bits (74), Expect = 1.9
Identities = 19/60 (31%), Positives = 30/60 (49%)
Frame = +1
Query: 16 TSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
+S LR P H I+ +A E GY ++ +A+ G SK IYR++ +K A+
Sbjct: 8 SSIGSLRSPHTHKA---IIISAIETLKECGYSGLSIEAVARRAGASKPTIYRWWGNKAAL 64
>gi|1723002|sp|Q10774|YF56_MYCTU HYPOTHETICAL 22.3 KD PROTEIN RV1556
>gi|1403486|emb|CAA98307| (Z74020) hypothetical protein
Rv1556 [Mycobacterium tuberculosis]
Length = 202
Score = 33.2 bits (74), Expect = 1.9
Identities = 34/143 (23%), Positives = 63/143 (43%), Gaps = 9/143 (6%)
Frame = +1
Query: 100 YGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSVDEAVANASTPP- 276
+GY++ TV +A + SKA +YR + SK +++ + E + + PP
Sbjct: 36 HGYDRLTVDAVAASARASKATVYRRWPSK-----------AELVLAAFIEGIRQVAVPPN 84
Query: 277 -----EQLRRMFKTLV-EAGNYLFFHDRKLYDIAATSISESWPSVGVYEDHLKALVLQIV 438
+ L R+ + + E G + L +++ + DH KAL+ I+
Sbjct: 85 TGNLRDDLLRLGELICREVGQHASTIRAVLVEVSRNPALND-VLQHQFVDHRKALIQYIL 143
Query: 439 RDGRESGEFERKTPLDETLNAI--YLVMRPYI 528
+ + GE DE + + YL+ R I
Sbjct: 144 QQAVDRGEISSAAISDELWDLLPGYLIFRSII 175
>gi|5199321|gb|AAD40803.1|AF145049_4 (AF145049) hypothetical
transcriptional regulator TylQ [Streptomyces fradiae]
Length = 213
Score = 33.2 bits (74), Expect = 1.9
Identities = 17/74 (22%), Positives = 35/74 (46%)
Frame = +1
Query: 31 LRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVIC 210
++Q + R +++AA E F GY +++ + K G S ++ F+SK+ + +
Sbjct: 2 VKQERAARTRRALIRAAAEVFAEEGYTPASLASICKRAGVSSGALHFQFESKKMLAGAVE 61
Query: 211 SNRLSIIITSVDEA 252
I+ + EA
Sbjct: 62 EQAARIVGRVIREA 75
>gi|4884815|gb|AAD31815.1|AF129856_1 (AF129856) transcriptional
regulatory protein PhlF [Pseudomonas fluorescens]
Length = 208
Score = 33.2 bits (74), Expect = 1.9
Identities = 19/60 (31%), Positives = 30/60 (49%)
Frame = +1
Query: 16 TSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
+S LR P H I+ +A E GY ++ +A+ G SK IYR++ +K A+
Sbjct: 8 SSIGSLRSPHTHKA---IIISAIETLKECGYSGLSIEAVARRAGASKPTIYRWWGNKAAL 64
>gi|3328116 (AF072887) regulator AmrR [Burkholderia pseudomallei]
Length = 187
Score = 33.2 bits (74), Expect = 1.9
Identities = 16/65 (24%), Positives = 32/65 (48%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSII 231
+ +++I+ AA G +T ++D+A+A G S+ +Y F+ K + +C S
Sbjct: 11 NTKNRILDAAELVLLEKGVGQTAMADIAEAAGMSRGAVYGHFNGKIEVCVAVCDRAFSRA 70
Query: 232 ITSVD 246
+ D
Sbjct: 71 VEGFD 75
>gi|6459946|gb|AAF11696.1|AE002049_1 (AE002049) transcriptional
regulator, TetR family [Deinococcus radiodurans]
Length = 204
Score = 32.8 bits (73), Expect = 2.5
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +1
Query: 58 RDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIIT 237
R++I A F GY ++ ++A+A+G +K +Y + K+A+ + L+ +
Sbjct: 23 RERIQTEAARLFVASGYHGVSMREVAEAVGVTKPALYHHYADKEALFLAMLDGALATLAR 82
Query: 238 SVDEA 252
V+ A
Sbjct: 83 LVEHA 87
>gi|987091|emb|CAA60451| (X86780) regulator of antibiotic transport
complexes [Streptomyces hygroscopicus]
Length = 204
Score = 32.5 bits (72), Expect = 3.2
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 16 TSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
T + LRQ V + I +AA GY + ++ +A+ G KA +YR + SKQA+
Sbjct: 12 TGGAALRQR----VTEAITEAAFAELADAGYARMSMESVARRAGVGKAALYRRWPSKQAM 67
>gi|1176684|sp|P42097|YPB3_LACLA HYPOTHETICAL 22.2 KD PROTEIN IN
LACX 3'REGION (ORF3) >gi|282294|pir||S25784 hypothetical
protein, 23K - Lactococcus lactis
>gi|44057|emb|CAA42989| (X60456) 23 kD protein
[Lactococcus lactis] >gi|1093223|prf||2103190D pbg
downstream ORF 3 [Lactococcus lactis]
Length = 196
Score = 32.5 bits (72), Expect = 3.2
Identities = 14/59 (23%), Positives = 29/59 (48%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSI 228
+ +++I+ A + + GY T+++D+ K Y +FDSK+ + N + I
Sbjct: 8 NTKEKILTATEQLIYKKGYTGTSINDILDETATGKGQFYYYFDSKKEACLAVIDNHVKI 66
>gi|6136468|sp|Q10528|YM50_MYCTU HYPOTHETICAL TRANSCRIPTIONAL
REGULATOR RV2250C >gi|3261572|emb|CAA94669.1| (Z70692)
hypothetical protein Rv2250c [Mycobacterium
tuberculosis]
Length = 219
Score = 32.1 bits (71), Expect = 4.2
Identities = 14/64 (21%), Positives = 36/64 (55%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSII 231
D +I++AA YG ++ T++++A+ G S+ +YR + ++I + ++ ++ +
Sbjct: 40 DTGGRILRAAASCVVDYGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIMASMLTSHIADV 99
Query: 232 ITSV 243
+ V
Sbjct: 100 LREV 103
>gi|2415719|dbj|BAA22229| (AB000617) LmrA [Bacillus subtilis]
>gi|2632554|emb|CAB12062| (Z99105) transcriptional
regulator [Bacillus subtilis]
Length = 188
Score = 31.7 bits (70), Expect = 5.6
Identities = 21/85 (24%), Positives = 37/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFF-DSKQAIGEVICSNRLSI 228
D R++I+ AAT F GY T ++ + K G K +Y F K+ + +
Sbjct: 5 DSREKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYYHFPGGKEQLAIEAVNEMKEY 64
Query: 229 IITSVDEAVANASTPPEQLRRMFKTL 306
I + + + + P E ++ K L
Sbjct: 65 IRQKIADCMEACTDPAEGIQAFLKEL 90
>gi|1877305|emb|CAB07148| (Z92774) hypothetical protein Rv3574
[Mycobacterium tuberculosis]
Length = 199
Score = 31.7 bits (70), Expect = 5.6
Identities = 24/102 (23%), Positives = 40/102 (38%)
Frame = +1
Query: 10 AYTSASQLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQ 189
A + S+L + R +I+ A + GYE + +A + +YR+F SK
Sbjct: 2 AVLAESELGSEAQRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFPSKV 61
Query: 190 AIGEVICSNRLSIIITSVDEAVANASTPPEQLRRMFKTLVEA 315
+ S I D + +TP ++L M L A
Sbjct: 62 HLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNRA 103
>gi|2193949|emb|CAB09609| (Z96800) hypothetical protein Rv0328
[Mycobacterium tuberculosis]
Length = 200
Score = 31.7 bits (70), Expect = 5.6
Identities = 25/91 (27%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
Frame = +1
Query: 43 QDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRL 222
Q RD+++ A GY T+ D+A+A G + A I F SK A+ +
Sbjct: 3 QQRTNRDKLLDGALACLRERGYGNTSSRDIARAAGVNIASINYHFGSKDALLDDALGRCF 62
Query: 223 SIIITSVDEAV--ANASTPPEQLRRMFKTLVEA 315
S V EA + A+ P Q+ + + V++
Sbjct: 63 STWNQRVQEAFDHSRAAGPAGQILAVLEATVDS 95
>gi|2499947|sp|Q25566|PYR5_NAEGR URIDINE 5'-MONOPHOSPHATE SYNTHASE
(UMP SYNTHASE) [INCLUDES: OROTATE
PHOSPHORIBOSYLTRANSFERASE (OPRTASE); OROTIDINE
5'-PHOSPHATE DECARBOXYLASE (OMPDECASE)] >gi|159723
(L08073) OMP synthase [Naegleria gruberi]
Length = 494
Score = 31.3 bits (69), Expect = 7.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 271 PPEQLRRMFKTLVEAGNYLFFHDRKLYDI 357
P EQ + K L + N+L F DRKL DI
Sbjct: 298 PDEQFTQQLKELAKKHNFLIFEDRKLADI 326
>gi|1176966|sp|P42105|YXAF_BACSU HYPOTHETICAL TRANSCRIPTIONAL
REGULATOR IN GNTR-HTPG INTERGENIC REGION
>gi|563939|dbj|BAA21585| (AB005554) see SWISS_PROT ACC#:
P42105 [Bacillus subtilis] >gi|2636546|emb|CAB16036|
(Z99124) similar to hypothetical proteins [Bacillus
subtilis]
Length = 191
Score = 31.3 bits (69), Expect = 7.3
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFF-DSKQAIGEVICSNRLSI 228
D R++I+ A+ GY T ++ + K G K +Y FF + K+ + + I
Sbjct: 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKI 65
Query: 229 IITSVDEAVANASTPPEQLRRMFK 300
+ + +++ +S P E ++ K
Sbjct: 66 VEHLIQQSMDESSDPVEAIQLFIK 89
>gi|2496477|sp|Q50720|YY05_MYCTU HYPOTHETICAL 20.6 KD PROTEIN
RV3405C PRECURSOR >gi|1449382|emb|CAB01018| (Z77165)
hypothetical protein Rv3405c [Mycobacterium
tuberculosis]
Length = 188
Score = 30.9 bits (68), Expect = 9.5
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 52 DVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSK-QAIGEVICSNRLSI 228
+V I++AAT+ F G T++ D+A + ++R F +K Q +G V+ + L
Sbjct: 18 EVAAAILQAATDLFAERGPAATSIRDIAARSKVNHGLVFRHFGTKDQLVGAVL--DHLGT 75
Query: 229 IITSVDEAVANASTPPEQLRRMFKTLVEA 315
+T + + A A L R + L A
Sbjct: 76 KLTRLLHSEAPADIIERALDRHGRVLARA 104
>gi|3261713|emb|CAB06694| (Z86089) hypothetical protein Rv0273c
[Mycobacterium tuberculosis]
Length = 206
Score = 30.9 bits (68), Expect = 9.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 76 AATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAI 195
AA R G TTV+D+ G S A Y ++DSK+A+
Sbjct: 19 AARTVVVRNGILATTVADITAEAGRSAASFYNYYDSKEAM 58
>gi|2827577|emb|CAA16632| (AL021646) hypothetical protein Rv3167c
[Mycobacterium tuberculosis]
Length = 208
Score = 30.9 bits (68), Expect = 9.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 37 QPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSK 186
+P+D + I+ A E + GY +++ +A+ G +K+ +YR + SK
Sbjct: 16 RPRDPRIDSAILSATAELLVQIGYSNLSLAAVAERAGTTKSALYRRWSSK 65
>gi|417356|sp|P32265|NFXB_PSEAE TRANSCRIPTIONAL REGULATORY PROTEIN
NFXB >gi|94794|pir||S21466 nfxB protein - Pseudomonas
aeruginosa >gi|45356|emb|CAA46598| (X65646) nfxB
[Pseudomonas aeruginosa]
Length = 187
Score = 30.9 bits (68), Expect = 9.5
Identities = 15/63 (23%), Positives = 35/63 (54%)
Frame = +1
Query: 112 KTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSVDEAVANASTPPEQLRR 291
+ T+ +LA+A G SKA ++RF ++ + +++ + +++ + + P E L+R
Sbjct: 23 RATLKELAEAAGVSKATLHRFCGTRDNLVQMLEDHGETVLNQIIQACDLEHAEPLEALQR 82
Query: 292 MFK 300
+ K
Sbjct: 83 LIK 85
>gi|383776|prf||1904215A nfxB gene [Pseudomonas aeruginosa]
Length = 187
Score = 30.9 bits (68), Expect = 9.5
Identities = 15/63 (23%), Positives = 35/63 (54%)
Frame = +1
Query: 112 KTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIIITSVDEAVANASTPPEQLRR 291
+ T+ +LA+A G SKA ++RF ++ + +++ + +++ + + P E L+R
Sbjct: 23 RATLKELAEAAGVSKATLHRFCGTRDNLVQMLEDHGETVLNQIIQACDLEHAEPLEALQR 82
Query: 292 MFK 300
+ K
Sbjct: 83 LIK 85
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152964198
Number of Sequences: 443958
Number of extensions: 3087308
Number of successful extensions: 9462
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9385
Number of HSP's gapped (non-prelim): 86
length of query: 206
length of database: 136,619,797
effective HSP length: 53
effective length of query: 152
effective length of database: 113,090,023
effective search space: 17189683496
effective search space used: 17189683496
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)