BLASTX 2.0.10 [Aug-26-1999]
Query= XF-11A04-GL62
(1107 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1707644|emb|CAA67866| (X99514) mexE [Pseudomonas aeruginosa] 66 5e-10
gi|2983278 (AE000702) acriflavin resistance protein AcrE [Aquif... 62 6e-09
gi|1399757 (U57969) membrane fusion protein MexC [Pseudomonas a... 57 2e-07
gi|3347916 (AF072887) putative membrane fusion protein AmrA [Bu... 57 4e-07
gi|2983757 (AE000735) cation efflux system (czcB-like) [Aquifex... 56 5e-07
gi|3219976|sp|P76397|YEGM_ECOLI HYPOTHETICAL 44.5 KD PROTEIN IN... 56 5e-07
gi|1788389 (AE000297) putative membrane protein [Escherichia coli] 56 5e-07
gi|1736780|dbj|BAA15928| (D90845) Membrane fusion protein MtrC ... 56 5e-07
gi|6502951|gb|AAF14522.1|AF147719_2 (AF147719) putative membran... 52 7e-06
gi|1709008|sp|P52477|MEXA_PSEAE MULTIDRUG RESISTANCE PROTEIN ME... 52 7e-06
gi|5091480|gb|AAD39553.1| (AF031417) TtgA [Pseudomonas putida] 50 5e-05
gi|399000|sp|P31223|ACRA_ECOLI ACRIFLAVIN RESISTANCE PROTEIN A ... 49 6e-05
gi|2605916|gb|AAD12178| (AF029405) periplasmic linker protein [... 46 7e-04
gi|399428|sp|P24180|ACRE_ECOLI ACRIFLAVIN RESISTANCE PROTEIN E ... 45 0.001
gi|2961294|emb|CAA12354| (AJ225023) RagD [Bradyrhizobium japoni... 41 0.013
gi|586677|sp|P37636|YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN... 41 0.017
gi|5420387|emb|CAB46679.1| (AJ243459) proteophosphoglycan [Leis... 40 0.039
gi|2224629|dbj|BAA20802| (AB002342) KIAA0344 [Homo sapiens] 39 0.051
gi|2983555 (AE000721) putative protein [Aquifex aeolicus] 39 0.051
gi|5420389|emb|CAB46680.1| (AJ243460) proteophosphoglycan [Leis... 39 0.067
gi|1086828 (U41263) similar to A. faecalis poly(3-hydroxybutyra... 39 0.088
gi|2578041|emb|CAB10072.1| (Z97195) match: multiple proteins; m... 39 0.088
gi|4240126|dbj|BAA74843.1| (AB020627) KIAA0820 protein [Homo sa... 39 0.088
gi|2114323|dbj|BAA20038| (D88734) membrane glycoprotein [Equine... 38 0.20
gi|1001690|dbj|BAA10427| (D64002) hypothetical protein [Synecho... 37 0.26
gi|188864 (M74027) mucin [Homo sapiens] 37 0.26
gi|2135765|pir||A43932 mucin 2 precursor, intestinal - human (f... 37 0.26
gi|186396 (M94131) mucin [Homo sapiens] 37 0.26
gi|2134574|pir||I51920 mucin - rhesus macaque (fragment) >gi|43... 37 0.26
gi|4505285|ref|NP_002448.1|| mucin 2, intestinal/tracheal >gi|2... 37 0.26
gi|138350|sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR >gi|737... 37 0.34
gi|563375|emb|CAA84031| (Z34277) mucin [Homo sapiens] 36 0.44
gi|6458143|gb|AAF10038.1|AE001904_14 (AE001904) hypothetical pr... 36 0.76
gi|2879765|emb|CAB10128.1| (Z97209) hypothetical ser-thr rich p... 35 1.00
gi|2114321|dbj|BAA20037| (D88733) membrane glycoprotein [Equine... 35 1.00
gi|95799|pir||S18536 envelope protein - Escherichia coli >gi|22... 35 1.00
gi|1582765|prf||2119294A YFW1 gene [Saccharomyces cerevisiae] 35 1.3
gi|2853293 (AF007190) intestinal mucin [Homo sapiens] 35 1.3
gi|6321759|ref|NP_011835.1|WSC4| Putative integral membrane pro... 34 2.9
gi|6671553|ref|NP_031480.1|| adaptor-related protein complex AP... 34 2.9
gi|399021|sp|P25304|AGRI_RAT AGRIN PRECURSOR >gi|279665|pir||AG... 34 2.9
gi|202799 (M64780) agrin [Rattus norvegicus] 34 2.9
gi|6458444|gb|AAF10314.1|AE001929_7 (AE001929) conserved hypoth... 34 2.9
gi|202800 (M64780) agrin [Rattus norvegicus] 34 2.9
gi|5541863|emb|CAB51071.1| (AL096857) hypothetical protein [Hom... 33 3.9
gi|5106074|dbj|BAA81385.1| (AP000064) 169aa long hypothetical p... 33 3.9
gi|1582641|prf||2119210A mucin [Homo sapiens] 33 3.9
gi|4633127|gb|AAD26632.1|AF110134_1 (AF110134) GlsA [Volvox car... 33 5.1
gi|5912136|emb|CAB56002.1| (AL117579) hypothetical protein [Hom... 33 5.1
gi|2688026 (AE001125) membrane fusion protein (mtrC) [Borrelia ... 33 5.1
gi|6409115|gb|AAF07848.1|AF201839_1 (AF201839) dynamin IIIbb is... 33 5.1
gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans] 33 5.1
gi|5902008|ref|NP_008992.1|| serum constituent protein >gi|4626... 32 6.6
gi|6322611|ref|NP_012685.1|YJR151C| Yjr151cp >gi|1352944|sp|P47... 32 6.6
gi|543415|pir||PC2022 mucin like protein Muc2 precursor - rat (... 32 6.6
gi|1176909|sp|Q09625|YS8A_CAEEL HYPOTHETICAL 84.3 KD PROTEIN ZK... 32 6.6
gi|2493240|sp|O10341|Y091_NPVOP HYPOTHETICAL 29.3 KD PROTEIN (O... 32 6.6
gi|3257337|dbj|BAA30020| (AP000004) 128aa long hypothetical pro... 32 8.7
gi|586667|sp|P37626|YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN ... 32 8.7
gi|107112|pir||A37232 mucin, tracheal (AMN-22) - human (fragment) 32 8.7
gi|111978|pir||S24169 mucin - rat 32 8.7
gi|6119822|gb|AAF04242.1|AF093228_1 (AF093228) Vps54 [Vibrio ch... 32 8.7
gi|730843|sp|P40798|STC_DROME SHUTTLE CRAFT PROTEIN >gi|487400 ... 32 8.7
gi|4972055|emb|CAB43923.1| (AL078470) putative protein [Arabido... 32 8.7
gi|2135764|pir||I53641 mucin - human (fragment) >gi|945219 (L46... 32 8.7
>gi|1707644|emb|CAA67866| (X99514) mexE [Pseudomonas aeruginosa]
Length = 414
Score = 66.0 bits (158), Expect = 5e-10
Identities = 87/340 (25%), Positives = 132/340 (38%), Gaps = 18/340 (5%)
Frame = +1
Query: 46 LALTACGNNHAPDPRTEAPLVRVVAV-QGAFATSRSFTGVVAARVQSDLGFRVSGKVLKR 222
L L+ACG AP V V V + FTG + A +L RVSG + +
Sbjct: 19 LVLSACGKAPETTQGMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRV 78
Query: 223 FVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVS 402
G +VK+G L IDP N+ +R L A +S
Sbjct: 79 AFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAIS 138
Query: 403 TSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQ 582
D R LS+ + A DG V G +V++G+
Sbjct: 139 AELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGE 198
Query: 583 ----PVVRLAR------TGEREAIVYLP-------ETLRPAIGSLGQATLYGNPQAAVSA 711
P+V + ER + Y+ +T + LG ++ GNP
Sbjct: 199 TCSPPLVSTDKVYAYFDADERVFLKYVELARQAGRDTRSESPVYLGLSSEDGNPHL---G 255
Query: 712 RLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPG 891
RL L N + T T R V + A G V++++ S ++L D G
Sbjct: 256 RLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLG 315
Query: 892 KGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVRP 1065
K V V+DG K V+R++++ + + V+ L GD++V G +R G V P
Sbjct: 316 K-KFVLVLDG-DNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQVDP 371
>gi|2983278 (AE000702) acriflavin resistance protein AcrE [Aquifex
aeolicus]
Length = 374
Score = 62.5 bits (149), Expect = 6e-09
Identities = 77/326 (23%), Positives = 132/326 (39%), Gaps = 20/326 (6%)
Frame = +1
Query: 73 HAPDPRTEAPLVRVVAVQGAFATSR---SFTGVVAARVQSDLGFRVSGKVLKRFVDTGQI 243
HA + + E V + V+ + G + A ++++ RV G V+ V G
Sbjct: 31 HAEEVKRETKTVSGLVVEPVKVVKEVPVEYPGTIVAGDRAEISTRVMGYVVDVKVKEGDF 90
Query: 244 VKRGQPLMSIDPID-------LGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVS 402
VK+GQ L IDP D + R++ L+ +G ++
Sbjct: 91 VKKGQTLFVIDPRDVKAQINIMKQRIAQAQKNYEAAKAHYEAVKKTYERFKKLLKEGAIT 150
Query: 403 TSAYDQIXXXXXXXXXXXXXXXXXXXXXRNT-------LSYAILLADADGVVVETLAEPG 561
+DQ+ R LSYA + A DG V++ + + G
Sbjct: 151 QHEFDQVEAQYLAAKAKLQAAKAEIRVAREAYNSAKAQLSYAEVKAPFDGYVIQKMVDRG 210
Query: 562 QVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAV-SARLRVLSNAA 738
+ + G P+ L T + V PE I +Y V A++ + A
Sbjct: 211 DIANPGMPLAVL-ETRPYKVEVSFPEKYFGEINIGDTLEVYVEKLGRVFPAKVVEVEPAV 269
Query: 739 DRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVI- 915
D V+RT++ + +++ + G VKV + E + L +P A++ GVWV+
Sbjct: 270 DPVSRTFKVKALIDDN--NVKSGLFVKVFKLEKIEEPTVL-IPEKAIYKRWDFTGVWVVK 326
Query: 916 -DGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREG 1050
DG + R + LG + +V L G+++V G EG
Sbjct: 327 PDGTLQLRLIRLGRKLG---NYYEVLAGLSPGERIVVEGIERACEG 369
>gi|1399757 (U57969) membrane fusion protein MexC [Pseudomonas
aeruginosa]
Length = 387
Score = 57.4 bits (136), Expect = 2e-07
Identities = 83/350 (23%), Positives = 136/350 (38%), Gaps = 22/350 (6%)
Frame = +1
Query: 28 RIYLLPLALTACGNNHAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQ----SDLGF 195
RI L +A+ G A + + A +V V V A + + + R++ +++
Sbjct: 9 RIGALAMAIALAGCGPAEERQEAAEMVLPVEVLTVQAEPLALSSELPGRIEPVRVAEVRA 68
Query: 196 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYR 375
RV+G V+++ + G VK G L IDP L RRY
Sbjct: 69 RVAGIVVRKRFEEGADVKAGDLLFQIDPAPLKAAVSRAEGELARNRAVLFEAQARVRRYE 128
Query: 376 DLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAE 555
LV VS +D R L YA + A G + L
Sbjct: 129 PLVKIQAVSQQDFDTATADLRSAEAATRSAQADLETARLNLGYASVTAPISGRIGRALVT 188
Query: 556 PGQVVSAGQPVVRLARTGEREAIVY-LPETLRPAI---GSLGQATLYGNPQAAVSAR--- 714
G +V G+ + +AR + + I +T A+ +L + TL A++ R
Sbjct: 189 EGALVGQGEATL-MARIQQLDPIYADFTQTAAEALRLRDALKKGTLAAGDSQALTLRVEG 247
Query: 715 --------LRVLSNAADRVTRTYEARYVL---EGALLHAPLGATVKVEIPDSTESISSLQ 861
L+ A DR T R +G LL G V+V P ++ ++
Sbjct: 248 TPYERQGALQFADVAVDRGTGQIALRGKFANPDGVLLP---GMYVRVRTPQGIDN-QAIL 303
Query: 862 VPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 1041
VP A+ G ++ G +A RS+ + Q+ L+ GD+V+ G +
Sbjct: 304 VPQRAVHRSSDGSAQVMVVGADERAESRSVGTGVMQGSRWQITEGLEPGDRVIVGGLAAV 363
Query: 1042 REGEIVRPIGQG 1077
+ G + P G
Sbjct: 364 QPGVKIVPKPDG 375
>gi|3347916 (AF072887) putative membrane fusion protein AmrA
[Burkholderia pseudomallei]
Length = 399
Score = 56.6 bits (134), Expect = 4e-07
Identities = 85/341 (24%), Positives = 130/341 (37%), Gaps = 28/341 (8%)
Frame = +1
Query: 61 CGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTG 237
CG + + VV V+ + S G + A Q+++ RV+G V R + G
Sbjct: 25 CGKHESEHDAAAPREASVVTVKKTSVPLSVELPGRLDAYRQAEVRARVAGIVTARTYEEG 84
Query: 238 QIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYD 417
Q VKRG L IDP + RRY +LV VS +
Sbjct: 85 QEVKRGAVLFRIDPAPFKAARDAAAGALEKAQAAHLAALDKRRRYDELVRDRAVSERDHT 144
Query: 418 QIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRL 597
+ + L YA + A DG L G +V GQ
Sbjct: 145 EALADERQAKAAVASARAELARAQLQLDYATVTAPIDGRARRALVTEGALV--GQDQATP 202
Query: 598 ARTGEREAIVYL--------PETLRPAIGSLGQATLYGNPQAAVS------------ARL 717
T E+ +Y+ E+LR A+ S G+A V+ +L
Sbjct: 203 LTTVEQLDPIYVNFSQPAADVESLRRAVKS-GRAAGIAQQDVEVTLVRPDGSTYARKGKL 261
Query: 718 RVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKG 897
A D T T R + GA V++ + D + ++ VP AL
Sbjct: 262 LFADLAVDPSTDTVAMRALFPNPERELLPGAYVRIAL-DRAVARDAILVPRDAL------ 314
Query: 898 PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKG-------NLKVGDQVVSLGAHLLREGEI 1056
+ D K V ++ K+ +T + AQ+KG L G++VV + A G
Sbjct: 315 --LRTADSATVKVVGQNGKIRDVTVEAAQMKGRDWIVTRGLAGGERVVVVDAAQFEAGTT 372
Query: 1057 VRPIGQGEA 1083
V+ + +G A
Sbjct: 373 VKALERGAA 381
>gi|2983757 (AE000735) cation efflux system (czcB-like) [Aquifex
aeolicus]
Length = 348
Score = 56.2 bits (133), Expect = 5e-07
Identities = 69/346 (19%), Positives = 127/346 (35%), Gaps = 1/346 (0%)
Frame = +1
Query: 13 QLASYRIYLLPLALTACGNNHAPDPRTEAPLVRVVAVQGA-FATSRSFTGVVAARVQSDL 189
Q Y ++LL L + P+ V VV V+ S F GV+ A +++L
Sbjct: 2 QTLLYILFLLFL-FSCSKTEEKKTPQARKIQVSVVEVKREKVVVSVPFKGVLKAVKEAEL 60
Query: 190 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERR 369
+ G + + + G+ VK+G+ L ++ R
Sbjct: 61 SSQEPGVLTRLYKREGEYVKKGEVLAQVESNLAKESYRKVLNQLKEVEKQVELQKKIYER 120
Query: 370 YRDLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETL 549
+ L + ++S Y++ + + + A DG + E
Sbjct: 121 RKKLFERELISKEEYEREKYKLEELIQRKKALESELKYFKEKVRRHYVRAPFDGYITERY 180
Query: 550 AEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLS 729
G V+ PV RL GE E +P + + + V R+ +S
Sbjct: 181 KNMGDYVTPQTPVFRLINLGELEFSFKVPARYVSLLKKGKELNVELENGKNVKGRVYFIS 240
Query: 730 NAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVW 909
D + + ++ G E+P + + +VP A+ G +W
Sbjct: 241 ERGDE-NNQFLVKLLINNEEGKLKAGTFGFAEVP--VREVYAFKVPEDAVILQGNKKIIW 297
Query: 910 VIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREG 1050
V++G ++ R ++V+ + A V+G+LK GD+VV+ LL+EG
Sbjct: 298 VLEGNRVRS--REVEVIFINGGYAYVEGDLKDGDKVVTENTFLLKEG 342
>gi|3219976|sp|P76397|YEGM_ECOLI HYPOTHETICAL 44.5 KD PROTEIN IN
ALKA-BAES INTERGENIC REGION PRECURSOR
Length = 415
Score = 56.2 bits (133), Expect = 5e-07
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 16/324 (4%)
Frame = +1
Query: 97 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 276
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 60 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 119
Query: 277 PIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXX 456
P + D RY+ L +VS D
Sbjct: 120 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 179
Query: 457 XXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 630
+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 180 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 239
Query: 631 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 771
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 240 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 296
Query: 772 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 951
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 297 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 351
Query: 952 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 1068
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 352 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 391
>gi|1788389 (AE000297) putative membrane protein [Escherichia coli]
Length = 464
Score = 56.2 bits (133), Expect = 5e-07
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 16/324 (4%)
Frame = +1
Query: 97 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 276
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 109 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 168
Query: 277 PIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXX 456
P + D RY+ L +VS D
Sbjct: 169 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 228
Query: 457 XXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 630
+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 229 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 288
Query: 631 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 771
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 289 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 345
Query: 772 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 951
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 346 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 400
Query: 952 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 1068
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 401 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 440
>gi|1736780|dbj|BAA15928| (D90845) Membrane fusion protein MtrC
precursor. [Escherichia coli]
Length = 455
Score = 56.2 bits (133), Expect = 5e-07
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 16/324 (4%)
Frame = +1
Query: 97 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 276
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 100 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 159
Query: 277 PIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXX 456
P + D RY+ L +VS D
Sbjct: 160 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 219
Query: 457 XXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 630
+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 220 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 279
Query: 631 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 771
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 280 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 336
Query: 772 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 951
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 337 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 391
Query: 952 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 1068
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 392 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 431
>gi|6502951|gb|AAF14522.1|AF147719_2 (AF147719) putative membrane
fusion protein; AmrA [Pseudomonas aeruginosa]
Length = 396
Score = 52.3 bits (123), Expect = 7e-06
Identities = 43/183 (23%), Positives = 62/183 (33%), Gaps = 2/183 (1%)
Frame = +1
Query: 37 LLPLALTACGNNHAPDPRTEAP--LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGK 210
L+ L L C EAP + +VA + G + A Q+++ RV+G
Sbjct: 16 LVALFLLGCEEAADAGKTAEAPAEVGVIVARPAPIGITSELPGRLEAYRQAEVRARVAGI 75
Query: 211 VLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAK 390
V +R + GQ V+ G L IDP L + +RY DL+
Sbjct: 76 VTRRLYEEGQDVRAGTVLFQIDPAPLKAALDISRGALARAEASHAAAADKLKRYADLIKD 135
Query: 391 GVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVV 570
+S Y + R L YA + A DG L G +V
Sbjct: 136 RAISEREYTEAQTDARQALAQIASAKAELEQARLRLGYATVTAPIDGRARRALVTEGALV 195
Query: 571 SAGQP 585
P
Sbjct: 196 GEDSP 200
>gi|1709008|sp|P52477|MEXA_PSEAE MULTIDRUG RESISTANCE PROTEIN MEXA
PRECURSOR >gi|481839|pir||S39629 hypothetical protein A -
Pseudomonas aeruginosa >gi|438853 (L11616) envC
homologue; ORFA [Pseudomonas aeruginosa]
Length = 383
Score = 52.3 bits (123), Expect = 7e-06
Identities = 84/340 (24%), Positives = 129/340 (37%), Gaps = 29/340 (8%)
Frame = +1
Query: 49 ALTACGNNHAPDPRTEAPLVRVVAVQGAFAT-SRSFTGVVAARVQSDLGFRVSGKVLKRF 225
AL+ CG + AP P + P V +V ++ T + G A +++ +V+G +LKR
Sbjct: 20 ALSGCGKSEAPPP-AQTPEVGIVTLEAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRL 78
Query: 226 VDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVST 405
G VK GQ L IDP +RY+ LVA VS
Sbjct: 79 FKEGSDVKAGQQLYQIDP-------ATYEADYQSAQANLASTQEQAQRYKLLVADQAVSK 131
Query: 406 SAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP 585
Y R L Y +L+ G + + G +V+ GQ
Sbjct: 132 QQY-------ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQ- 183
Query: 586 VVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQAAVS----------- 708
T ++ +Y+ T LR + S GQ G+ A VS
Sbjct: 184 -ANAMATVQQLDPIYVDVTQPSTALLRLRRELAS-GQLERAGDNAAKVSLKLEDGSQYPL 241
Query: 709 -ARLRVLSNAADRVTRTYEARYV--------LEGALLHAPLGATVKVEIPDSTESISSLQ 861
RL + D T + R V L G +HA L VK + ++
Sbjct: 242 EGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQLQEGVKQK---------AIL 292
Query: 862 VPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 1041
P + KG ++ K R IK + D V L GD++++ G +
Sbjct: 293 APQQGVTRDLKGQATALVVNAQNKVELRVIKADRVIGDKWLVTEGLNAGDKIITEGLQFV 352
Query: 1042 REGEIVRPI 1068
+ G V+ +
Sbjct: 353 QPGVEVKTV 361
>gi|5091480|gb|AAD39553.1| (AF031417) TtgA [Pseudomonas putida]
Length = 384
Score = 49.6 bits (116), Expect = 5e-05
Identities = 84/341 (24%), Positives = 130/341 (37%), Gaps = 29/341 (8%)
Frame = +1
Query: 40 LPLALTACGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRVSGKVL 216
L L+ C A P +AP V VV +Q AF + G +A +++ +V+G +L
Sbjct: 16 LATLLSGCKKEEAA-PAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIIL 74
Query: 217 KRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGV 396
KR G VK GQ L IDP + RY+ L+ +
Sbjct: 75 KRLFKEGSEVKEGQQLYQIDP-------AVYEATLANAKANLLATRSLAERYKQLIDEQA 127
Query: 397 VSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSA 576
VS YD + L Y +LA G + + G +VS
Sbjct: 128 VSKQEYDD-------ANAKRLQAEASLKSAQIDLRYTKVLAPISGRIGRSSFTEGALVSN 180
Query: 577 GQPVVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQAAV--------- 705
GQ T ++ +Y+ T LR + S GQ GN A+V
Sbjct: 181 GQ--TDAMATIQQLDPIYVDVTQSTAELLKLRRDLES-GQLQKAGNNAASVQLVLEDGSL 237
Query: 706 ---SARLRVLSNAADRVTRTYEAR--------YVLEGALLHAPLGATVKVEIPDSTESIS 852
RL A D T + R +L G +HA L A V + +
Sbjct: 238 FKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGV---------NAN 288
Query: 853 SLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGA 1032
++ P + KG ++ + K R +K ++ L GD++++ G
Sbjct: 289 AILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGL 348
Query: 1033 HLLREGEIVR 1062
+R G V+
Sbjct: 349 QYVRPGVEVK 358
>gi|399000|sp|P31223|ACRA_ECOLI ACRIFLAVIN RESISTANCE PROTEIN A
PRECURSOR >gi|625730|pir||A36938 lipoprotein acrA
precursor - Escherichia coli >gi|290405 (M94248)
acriflavine resistance protein [Escherichia coli]
>gi|532310 (U00734) 42 kDa protein [Escherichia coli]
>gi|1773145 (U82664) lipoprotein AcrA precursor
[Escherichia coli] >gi|1786668 (AE000152) acridine efflux
pump [Escherichia coli]
Length = 397
Score = 49.2 bits (115), Expect = 6e-05
Identities = 77/339 (22%), Positives = 120/339 (34%), Gaps = 22/339 (6%)
Frame = +1
Query: 46 LALTACGNNHAPDPRTEAPLVRVVAVQGA-FATSRSFTGVVAARVQSDLGFRVSGKVLKR 222
LALT C + A + P V VV V+ + G +A +++ +VSG +LKR
Sbjct: 20 LALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKR 79
Query: 223 FVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVS 402
G ++ G L IDP RY+ L+ +S
Sbjct: 80 NFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYIS 139
Query: 403 TSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQ 582
YDQ R L+Y + + G + ++ G +V GQ
Sbjct: 140 KQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQ 199
Query: 583 PVVRLARTGEREAIV---------YLPETLRPAIGSLGQATLYGNPQAAVS--------- 708
LA + + I +L A G+L Q N +A VS
Sbjct: 200 -ATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQE----NGKAKVSLITSDGIKF 254
Query: 709 ---ARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGAL 879
L D+ T + R + G V+ + + +++ VP +
Sbjct: 255 PQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNP-NAILVPQQGV 313
Query: 880 FDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIV 1059
+G ++ G K R I D V LK GD+VV G +R G V
Sbjct: 314 TRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQV 373
Query: 1060 R 1062
+
Sbjct: 374 K 374
>gi|2605916|gb|AAD12178| (AF029405) periplasmic linker protein
[Pseudomonas putida]
Length = 382
Score = 45.7 bits (106), Expect = 7e-04
Identities = 82/353 (23%), Positives = 136/353 (38%), Gaps = 32/353 (9%)
Frame = +1
Query: 10 RQLASYR-IYLLPLA----LTACGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAA 171
RQ+ S R + ++PL ++ CG T P V V V+ A + G +A
Sbjct: 2 RQIRSPRALRVIPLTALMLISGCGEKEQVSSATPPPDVGVYTVRAQALTLTTDLPGRTSA 61
Query: 172 RVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXX 351
+++ +VSG + KR G VK GQ L IDP
Sbjct: 62 FRVAEVRPQVSGILQKRSFVEGAEVKLGQQLYQIDP-------RTYEAQLRRAEANRTSA 114
Query: 352 XNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADG 531
N RRY L+ VS YD R + Y +L+ G
Sbjct: 115 QNLARRYETLLKTKAVSKQQYDD-------ALAAWKQAEADYQVARIDVQYTRVLSPISG 167
Query: 532 VVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSA 711
+ + G +V+ GQ LA + + I + +P L G +A S
Sbjct: 168 RIGRSTVTEGALVTNGQ-AQSLATVTQLDPIYV--DVTQPI------TKLLGLQKALESG 218
Query: 712 RLRVLSNAADRVTRTYE--ARYVLEGALLHAPL-------GATVKVEIPDSTESI----- 849
RL+ V+ T + + Y L G L + + T++ E P+ +
Sbjct: 219 RLQKTGENQAEVSLTLDDGSAYPLPGTLKFSEVSVDPTTGSVTLRAEFPNPNRKLLPGMF 278
Query: 850 -----------SSLQVPIGALFDPGKG-PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKG 993
+++ VP A+ +G P VWV+ R I+ L + +
Sbjct: 279 VHALLKEGVQNAAILVPQQAISRDTRGVPSVWVVKADNT-VESREIQTLRTVGNAWLISN 337
Query: 994 NLKVGDQVVSLGAHLLREGEIVRPI 1068
+ G+++++ G +R G V +
Sbjct: 338 GVTEGERIITEGVQRVRSGIAVNAV 362
>gi|399428|sp|P24180|ACRE_ECOLI ACRIFLAVIN RESISTANCE PROTEIN E
PRECURSOR (ENVC PROTEIN) >gi|290408 (M96848) acriflavine
resistance protein [Escherichia coli]
>gi|510829|emb|CAA41016| (X57948) envelope protein
[Escherichia coli] >gi|606206|gb|AAA58069.1| (U18997)
alternate name envC [Escherichia coli] >gi|1789665
(AE000405) transmembrane protein affects septum formation
and cell membrane permeability [Escherichia coli]
Length = 385
Score = 44.9 bits (104), Expect = 0.001
Identities = 69/330 (20%), Positives = 116/330 (34%), Gaps = 18/330 (5%)
Frame = +1
Query: 73 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 252
H +P+ +V+ ++ G A +++ +VSG VL R G V+
Sbjct: 33 HVGEPQVTVHIVKTAPLE----VKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQA 88
Query: 253 GQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXX 432
GQ L IDP +RY LV +S YDQ
Sbjct: 89 GQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIAD 148
Query: 433 XXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGE 612
R L+Y + A G + ++ G +V+ GQ LA +
Sbjct: 149 ARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQ-TTELATVQQ 207
Query: 613 REAIVYLPET--------LRPAI--GSLGQATLYGNPQAA--------VSARLRVLSNAA 738
+ I Y+ T L+ ++ G+L + N + + L+
Sbjct: 208 LDPI-YVDVTQSSNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTV 266
Query: 739 DRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVID 918
D T + R V G V+ I + + ++ +P + +G +I
Sbjct: 267 DESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQP-DAILIPQQGVSRTPRGDATVLIV 325
Query: 919 GKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVR 1062
++ R + D + LK GDQV+ G R GE V+
Sbjct: 326 NDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVK 373
>gi|2961294|emb|CAA12354| (AJ225023) RagD [Bradyrhizobium japonicum]
Length = 423
Score = 41.4 bits (95), Expect = 0.013
Identities = 75/328 (22%), Positives = 124/328 (36%), Gaps = 21/328 (6%)
Frame = +1
Query: 76 APDPRTEAPLVRVVAVQGAFATSR-SFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 252
A RT P VRV VQ + + + A +++ R SG + KR+VD G VK+
Sbjct: 73 AEQVRTNVPEVRVATVQASGDLMKVTLPATTTAFEAANIFARTSGYIEKRYVDIGDRVKK 132
Query: 253 GQPLMSI--DPIDLGLXXXXXXXXXXXXXXXXXXXXND-----ERRYRDLVAKGVVSTSA 411
G L+ I +D + + R +LV +G ++
Sbjct: 133 GDLLVEITAPELDQQIAQAQATLAQDQAALQQAQASRELADVTNSRDSNLVKQGWLTAQQ 192
Query: 412 YDQIXXXXXXXXXXXXXXXXXXXXXRNTL-------SYAILLADADGVVVETLAEPGQVV 570
D + SY ++A DGVV + + G +V
Sbjct: 193 GDNDRLTLRAQQGAVGVAQSNIAAQEAQIRVLQQEKSYQRVVAPFDGVVTQRNVDNGSLV 252
Query: 571 SAGQP-VVRLARTGEREAIVYLPET----LRPAIGS-LGQATLYGNPQAAVSARLRVLSN 732
AG + + + V++P+ + P + S + + G A R+
Sbjct: 253 QAGSTFMFTMMHSNVIRTQVFVPQDEAFGVAPGVDSDIRVPEIPGRTFAGKVTRIATALQ 312
Query: 733 AADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWV 912
R T E LL + TV++ IP T S + +P AL G V V
Sbjct: 313 PGSRTLLT-EIDVPNPDGLLSPGIYCTVELSIPRRTPSTT---IPSDALVFDQNGLHVAV 368
Query: 913 IDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIV 1059
+ + ++ + + +V+ ++ GDQVV A L EG V
Sbjct: 369 V--RNGTVHFQQVSISRDFGTTVEVRDGVQPGDQVVLNPAVNLAEGSKV 415
>gi|586677|sp|P37636|YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN IN
HDED-GADA INTERGENIC REGION PRECURSOR
>gi|1073514|pir||S47733 hypothetical protein o385 -
Escherichia coli >gi|466650 (U00039) No definition line
found [Escherichia coli] >gi|1789929 (AE000427) putative
membrane protein [Escherichia coli]
Length = 385
Score = 41.0 bits (94), Expect = 0.017
Identities = 80/351 (22%), Positives = 129/351 (35%), Gaps = 38/351 (10%)
Frame = +1
Query: 28 RIYLLPLA-----LTACGNNHAPDPRTEAPLVRVVAVQ-GAFATSRSFTGVVAARVQSDL 189
R L+PL LTAC + A + P V VV + G+ G +++
Sbjct: 5 RKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEI 64
Query: 190 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERR 369
+V G ++KR G V +G L IDP L R
Sbjct: 65 RPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNR 124
Query: 370 YRDLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETL 549
L+ VS YD L YA + + GV ++
Sbjct: 125 QASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSS 184
Query: 550 AEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLS 729
G +V+A Q +++V + + L P L Q+ Q + + V S
Sbjct: 185 VTVGALVTANQ----------ADSLVTV-QRLDPIYVDLTQSV-----QDFLRMKEEVAS 228
Query: 730 NAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVP-------------- 867
+V + + LE ++ G T+K P E+ S+ +
Sbjct: 229 GQIKQVQGSTPVQLNLENGKRYSQTG-TLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGM 287
Query: 868 -IGALFDPGKGPGVWVI--DGKPAKAVWRSIKVLGLTDDVAQ---------------VKG 993
+ AL D G V ++ +G A ++ ++ DDV Q V
Sbjct: 288 YVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTS 347
Query: 994 NLKVGDQVVSLGAHLLREGEIVRPIGQGE 1080
L+ GD+V+ G +R G R I +
Sbjct: 348 GLQAGDRVIVSGLQRIRPGIKARAISSSQ 376
>gi|5420387|emb|CAB46679.1| (AJ243459) proteophosphoglycan [Leishmania
major]
Length = 873
Score = 39.9 bits (91), Expect = 0.039
Identities = 41/152 (26%), Positives = 71/152 (45%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLP 918
AP+ +S P + +PS A S + S + P ++S+ S S+ + + P
Sbjct: 685 APSASSSSAPSSSSSAPS----ASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAP 740
Query: 917 SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRS 738
S + + P S++AP + S S S S+ + APS + S APSS+ +S + S
Sbjct: 741 SSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS-SSSAPSASSS 799
Query: 737 AALDSTLNLADTAA*GLPYNVAWPSDPMAGRS 642
+A S+ + A +A+ + + S P A S
Sbjct: 800 SAPSSSSSSAPSASSSSAPSSSSSSAPSASSS 831
Score = 37.1 bits (84), Expect = 0.26
Identities = 40/160 (25%), Positives = 72/160 (45%)
Frame = -2
Query: 1052 SPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQTPGPFPGSNNA 873
S S A S + S + P ++S+ S S+ + + PS + + P S++A
Sbjct: 634 SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSA 693
Query: 872 PIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRSAALDSTLNLADTAA* 693
P + S S S S+ + APS + S APSS+ +S + S+A S+ + A +A+
Sbjct: 694 PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS-SSSAPSASSSSAPSSSSSSAPSAS- 751
Query: 692 GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGWPA 573
+ + PS + S S +S S + ++ P+
Sbjct: 752 ----SSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 787
Score = 34.0 bits (76), Expect = 2.2
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRC-APSDTTWSP----TLRLPFTCATSSVSPSTLMERHTA 933
AP+ +S P + +PS APS ++ S + P + ++S+ S S+ ++
Sbjct: 762 APSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 821
Query: 932 FAGLPSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSST 771
+ PS + + P S++AP + S S S+ + APS + S APSS+
Sbjct: 822 SSSAPSASSSSAPSSSSSSAPSASSS-------SASSSSSSAPSASSSSAPSSS 868
Score = 32.5 bits (72), Expect = 6.6
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLP 918
AP++ +S P + S APS ++ +P+ ++SS +PS + + P
Sbjct: 739 APSSSSSSAPSASSSS------APSSSSSAPSASSSSAPSSSSSAPS------ASSSSAP 786
Query: 917 SITQTPGPFPGSNNAPIGTCSD--DIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVT 744
S + + P S++AP + S S + S+ + APS + S APSS+ ++ +
Sbjct: 787 SSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASS 846
Query: 743 RSAALDST 720
SA+ S+
Sbjct: 847 SSASSSSS 854
>gi|2224629|dbj|BAA20802| (AB002342) KIAA0344 [Homo sapiens]
Length = 1246
Score = 39.5 bits (90), Expect = 0.051
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 14/128 (10%)
Frame = -2
Query: 1025 SDTTWSPTLRLPFTCATSSVS-----PSTLMERHTAFAGLPSITQTPGPFPGSNNAPIGT 861
S +T SP+L++P + + VS PS + +A AG T TPGP P + +
Sbjct: 444 SISTTSPSLQVPTSTSEIVVSSTALYPSVTVSATSASAG--GSTATPGPKPPAVVSQQAA 501
Query: 860 CSDDIDSVLSGISTLTVAPSGA------WSKAPSSTYLAS*VRVTRSAALDSTLNLADTA 699
S + + L+ +ST T PS A S + S+ LA V V + +LD T + + T
Sbjct: 502 GSTTVGATLTSVSTTTSFPSTASQLSIQLSSSTSTPTLAETV-VVSAHSLDKTSHSSTT- 559
Query: 698 A*GLPYNVAWP---SDPMAGRS 642
GL ++++ P S P AG S
Sbjct: 560 --GLAFSLSAPSSSSSPGAGVS 579
>gi|2983555 (AE000721) putative protein [Aquifex aeolicus]
Length = 374
Score = 39.5 bits (90), Expect = 0.051
Identities = 20/39 (51%), Positives = 25/39 (63%)
Frame = +1
Query: 163 VAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDP 279
V A S L FRVSGKV++ + D G VKRG+ L +DP
Sbjct: 39 VKADELSYLSFRVSGKVIEVYKDLGDYVKRGEALAKLDP 77
>gi|5420389|emb|CAB46680.1| (AJ243460) proteophosphoglycan [Leishmania
major]
Length = 383
Score = 39.1 bits (89), Expect = 0.067
Identities = 31/109 (28%), Positives = 52/109 (47%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLP 918
AP+ +S P + +PS A S + S + P ++S+ S S+ + + P
Sbjct: 10 APSASSSSAPSSSSSAPS----ASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAP 65
Query: 917 SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSST 771
S + + P S++AP + S S S S+ + APS + S APSS+
Sbjct: 66 SSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS 114
Score = 36.4 bits (82), Expect = 0.44
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRC-APSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGL 921
AP+ +S P + +PS APS ++ +P+ ++SS +PS + +
Sbjct: 87 APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPS------ASSSSA 140
Query: 920 PSITQTPGPFPGSNNAPIGTCSD--DIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRV 747
PS + + P S++AP + S S + S+ + APS + S APSS+ +S
Sbjct: 141 PSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS--SSAPSA 198
Query: 746 TRSAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSP 606
+ S+A S+ + A +A+ + + PS + S S T +P
Sbjct: 199 SSSSAPSSSSSSAPSAS-----SSSAPSSSSSAPSSSSTTTTMDPTP 240
Score = 35.2 bits (79), Expect = 1.00
Identities = 42/152 (27%), Positives = 72/152 (46%), Gaps = 1/152 (0%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRC-APSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGL 921
AP+ +S P + +PS APS ++ S P ++S+ S S+ + +
Sbjct: 25 APSASSSSAPSSSSSAPSASSSSAPSSSSSSA----PSASSSSAPSSSSSSAPSASSSSA 80
Query: 920 PSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTR 741
PS + + P S++AP + S S S S+ + APS + S APSS+ +S +
Sbjct: 81 PS-SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS--SSAPSASS 137
Query: 740 SAALDSTLNLADTAA*GLPYNVAWPSDPMAGRS 642
S+A S+ + A +A+ + + S P A S
Sbjct: 138 SSAPSSSSSSAPSASSSSAPSSSSSSAPSASSS 170
Score = 33.6 bits (75), Expect = 2.9
Identities = 32/113 (28%), Positives = 55/113 (48%)
Frame = -2
Query: 980 ATSSVSPSTLMERHTAFAGLPSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPS 801
A+SS +PS+ +A + + + P S++AP + S S S S+ + APS
Sbjct: 75 ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPS 134
Query: 800 GAWSKAPSSTYLAS*VRVTRSAALDSTLNLADTAA*GLPYNVAWPSDPMAGRS 642
+ S APSS+ +S + S+A S+ + A +A+ + + S P A S
Sbjct: 135 ASSSSAPSSS-SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSS 186
>gi|1086828 (U41263) similar to A. faecalis poly(3-hydroxybutyrate)
depolymerase (SP:PHB_ALCFA, P12625); similar to zinc
finger protein 40 (SP:ZEP1_HUMAN, P15822) [Caenorhabditis
elegans]
Length = 1777
Score = 38.7 bits (88), Expect = 0.088
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 8/176 (4%)
Frame = -2
Query: 1091 TTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSI 912
T+ SP P S S S+ T SPT T TS+++PST ++ + P+
Sbjct: 360 TSSTSPIPSTTQTSSSAPSTYTSNFTPSPTT----TLLTSTIAPSTQGVPTSSKSSSPNS 415
Query: 911 TQTPGPFPGSNNAPIGTCSDDIDSV-----LSGISTLTVAPSGAWSKAPSSTYLAS*VRV 747
T T PG+ ++ +G+ S I S +STLT++ S P+ST L V
Sbjct: 416 TPTTTITPGAPSSTLGSSSSTIVSTTITPSTPKVSTLTLSQ----SPTPTSTPLV----V 467
Query: 746 TRSAALDSTLNLADT---AA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGWP 576
+ S++ S+ + T + G+P + + P + + T+ + +T P
Sbjct: 468 SSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTPKSTVTASPSTTGATSTASP 527
Query: 575 ALTT 564
+ T
Sbjct: 528 STIT 531
>gi|2578041|emb|CAB10072.1| (Z97195) match: multiple proteins; match:
Q08877 Q61360 Q61359 Q05193 P21575; match: P39053 P50570
P39054 P39052 P27619; match: P39055 Q93176 O00429 Q22428
Q94464; match: multiple cDNAs; match: D14076 L25605
L31395 L29457 L31...
Length = 232
Score = 38.7 bits (88), Expect = 0.088
Identities = 38/124 (30%), Positives = 49/124 (38%), Gaps = 2/124 (1%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWS-PTLRLPFTCATSSVSPSTLMERHTAFAGL 921
AP + W I SRR PS TT PTL P TS P+ + +G
Sbjct: 117 APPPVDDSW-----IQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGA 171
Query: 920 PSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWS-KAPSSTYLAS*VRVT 744
P + PGP P P + SD + S T AP S + P S + +R
Sbjct: 172 PPVPFRPGPLP-----PFPSSSDSFGAPPQVPSRPTRAPPSVPSRRPPPSPTRPTIIRPL 226
Query: 743 RSAALD 726
S+ LD
Sbjct: 227 ESSLLD 232
>gi|4240126|dbj|BAA74843.1| (AB020627) KIAA0820 protein [Homo sapiens]
Length = 702
Score = 38.7 bits (88), Expect = 0.088
Identities = 38/124 (30%), Positives = 49/124 (38%), Gaps = 2/124 (1%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWS-PTLRLPFTCATSSVSPSTLMERHTAFAGL 921
AP + W I SRR PS TT PTL P TS P+ + +G
Sbjct: 587 APPPVDDSW-----IQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGA 641
Query: 920 PSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWS-KAPSSTYLAS*VRVT 744
P + PGP P P + SD + S T AP S + P S + +R
Sbjct: 642 PPVPFRPGPLP-----PFPSSSDSFGAPPQVPSRPTRAPPSVPSRRPPPSPTRPTIIRPL 696
Query: 743 RSAALD 726
S+ LD
Sbjct: 697 ESSLLD 702
>gi|2114323|dbj|BAA20038| (D88734) membrane glycoprotein [Equine
herpesvirus 1]
Length = 867
Score = 37.5 bits (85), Expect = 0.20
Identities = 60/330 (18%), Positives = 90/330 (27%), Gaps = 8/330 (2%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDT----TWSPTLRLPFTCATSSVSPSTLMERHTAFA 927
PTT +SP T SPS S T + +P+ T +S S T TA
Sbjct: 58 PTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTSTETTTTTPTAST 117
Query: 926 GLPSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRV 747
P+ T T P + + T + + +T T P+ + ++T + V
Sbjct: 118 TTPTTT-TAAPTTAATTTAVTTAASTSAETTTATATATSTPTTTTPTSTTTTTATTTVPT 176
Query: 746 TRSAALDSTLNLADTAA*GLPYN----VAWPSDPMAGRSVSGRYTIASRSPVRARRTTGW 579
T S D+T TAA + A + + T A+ + T
Sbjct: 177 TASTTTDTTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT 236
Query: 578 PALTTCPGXXXXXXXXXXXXARRMA*LNVFXXXXXXXXXXXXXXXXXXXXXXXXXXADVE 399
A TT + A
Sbjct: 237 AATTTAATTTAATTTAATTSSATTAATTTAATTTAATTTAATTTAATTTAATTTAATTTA 296
Query: 398 TTPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKPKSIGSMLMRGWPRLTICPVSTKR 219
T P S GS G T P ++
Sbjct: 297 ATTTAATTTAATTTAATTTAATTTAATTTAATTTGSPTS-GSTSTTG--ASTSTPSASTA 353
Query: 218 FSTLPDTRKPRSL*TRAATTPVNDRDVANAP*TATTLT 105
S P + + T + TP + A + A T T
Sbjct: 354 TSATPTSTSTSAAATTSTPTPTSAATSAESTTEAPTST 391
>gi|1001690|dbj|BAA10427| (D64002) hypothetical protein
[Synechocystis sp.]
Length = 501
Score = 37.1 bits (84), Expect = 0.26
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 40 LPLALTACGNNHAPDPRTEAPLVRVVAVQ----GAFATSRSFTGVVAARVQSDLGFRVSG 207
L L TACG + P AP V +Q + S F G + A +L ++ G
Sbjct: 17 LALLNTACGGDK---PGANAPRAIPVQLQTLEPSSVVDSNEFVGNLVATNFVELAPKIDG 73
Query: 208 KVLKRFVDTGQIVKRGQPLMSIDP 279
++L+ + GQ V G P++ ++P
Sbjct: 74 RILRIYAQWGQQVNEGDPILLLEP 97
>gi|188864 (M74027) mucin [Homo sapiens]
Length = 573
Score = 37.1 bits (84), Expect = 0.26
Identities = 50/179 (27%), Positives = 67/179 (36%), Gaps = 2/179 (1%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT SP P T P +P TT +P+ P T T++ P+T T P
Sbjct: 216 PTTTPSPPPTTTTTPPPTTTPSPPTTT-TPS---PPTITTTTPPPTTTPSPPTTTTTTPP 271
Query: 914 ITQTPGPFPGSN--NAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTR 741
T TP P P + P T + + S T T P + +P +T T
Sbjct: 272 PTTTPSP-PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTT-------TTP 323
Query: 740 SAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGWPALTTC 561
S + +T T P PS P + T S SP+ TT P+ TT
Sbjct: 324 SPPITTTTTPPPTTTPSSPITTT-PSPPTTTMTTPSPTTTPS-SPI---TTTTTPSSTTT 378
Query: 560 P 558
P
Sbjct: 379 P 379
Score = 33.6 bits (75), Expect = 2.9
Identities = 30/110 (27%), Positives = 43/110 (38%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT PI T +P S T +P+ P T ++ SP+T PS
Sbjct: 318 PTTTTPSPPITTTTTPPPTTTPSSPITTTPS---PPTTTMTTPSPTTTPSSPITTTTTPS 374
Query: 914 ITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYL 765
T TP P P + P T + + +T+T P S ++T L
Sbjct: 375 STTTPSPPPTTMTTPSPTTTPSPPT-----TTMTTLPPTTTSSPLTTTPL 419
>gi|2135765|pir||A43932 mucin 2 precursor, intestinal - human
(fragments)
Length = 3020
Score = 37.1 bits (84), Expect = 0.26
Identities = 50/179 (27%), Positives = 67/179 (36%), Gaps = 2/179 (1%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT SP P T P +P TT +P+ P T T++ P+T T P
Sbjct: 1558 PTTTPSPPPTTTTTPPPTTTPSPPTTT-TPS---PPTITTTTPPPTTTPSPPTTTTTTPP 1613
Query: 914 ITQTPGPFPGSN--NAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTR 741
T TP P P + P T + + S T T P + +P +T T
Sbjct: 1614 PTTTPSP-PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTT-------TTP 1665
Query: 740 SAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGWPALTTC 561
S + +T T P PS P + T S SP+ TT P+ TT
Sbjct: 1666 SPPITTTTTPPPTTTPSSPITTT-PSPPTTTMTTPSPTTTPS-SPI---TTTTTPSSTTT 1720
Query: 560 P 558
P
Sbjct: 1721 P 1721
Score = 33.6 bits (75), Expect = 2.9
Identities = 30/110 (27%), Positives = 43/110 (38%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT PI T +P S T +P+ P T ++ SP+T PS
Sbjct: 1660 PTTTTPSPPITTTTTPPPTTTPSSPITTTPS---PPTTTMTTPSPTTTPSSPITTTTTPS 1716
Query: 914 ITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYL 765
T TP P P + P T + + +T+T P S ++T L
Sbjct: 1717 STTTPSPPPTTMTTPSPTTTPSPPT-----TTMTTLPPTTTSSPLTTTPL 1761
>gi|186396 (M94131) mucin [Homo sapiens]
Length = 1270
Score = 37.1 bits (84), Expect = 0.26
Identities = 50/179 (27%), Positives = 67/179 (36%), Gaps = 2/179 (1%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT SP P T P +P TT +P+ P T T++ P+T T P
Sbjct: 933 PTTTPSPPPTTTTTPPPTTTPSPPTTT-TPS---PPTITTTTPPPTTTPSPPTTTTTTPP 988
Query: 914 ITQTPGPFPGSN--NAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTR 741
T TP P P + P T + + S T T P + +P +T T
Sbjct: 989 PTTTPSP-PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTT-------TTP 1040
Query: 740 SAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGWPALTTC 561
S + +T T P PS P + T S SP+ TT P+ TT
Sbjct: 1041 SPPITTTTTPPPTTTPSSPITTT-PSPPTTTMTTPSPTTTPS-SPI---TTTTTPSSTTT 1095
Query: 560 P 558
P
Sbjct: 1096 P 1096
Score = 33.6 bits (75), Expect = 2.9
Identities = 30/110 (27%), Positives = 43/110 (38%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT PI T +P S T +P+ P T ++ SP+T PS
Sbjct: 1035 PTTTTPSPPITTTTTPPPTTTPSSPITTTPS---PPTTTMTTPSPTTTPSSPITTTTTPS 1091
Query: 914 ITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYL 765
T TP P P + P T + + +T+T P S ++T L
Sbjct: 1092 STTTPSPPPTTMTTPSPTTTPSPPT-----TTMTTLPPTTTSSPLTTTPL 1136
>gi|2134574|pir||I51920 mucin - rhesus macaque (fragment) >gi|437055
(U00483) mucin [Macaca mulatta]
Length = 216
Score = 37.1 bits (84), Expect = 0.26
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PT+ +P +T + + P+ T+ P T T++V+P+ P+
Sbjct: 67 PTSTQTPTSTPITTTTTTHTPTPTPTSTQTPTPTPITTTTTTVTPTPT----------PT 116
Query: 914 ITQTPGPFPGSNN--------APIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSST 771
TQTP P P ++N P T + + + + +T T P+ ++ P+ T
Sbjct: 117 STQTPTPTPITSNTTAMTPTPTPTSTQTPTVTPITTTTTTATPTPTPTSTQTPTPT 172
Score = 33.6 bits (75), Expect = 2.9
Identities = 25/112 (22%), Positives = 46/112 (40%), Gaps = 4/112 (3%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLP- 918
PT+ +P +T + + P+ T+ P T T++ +P+ P
Sbjct: 19 PTSTQTPTSTPITTTTTTATPTPTPTSTQTPTSTPITTTTTTATPTPTPTSTQTPTSTPI 78
Query: 917 ---SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS 759
+ T TP P P S P T + + +T+T P+ ++ P+ T + S
Sbjct: 79 TTTTTTHTPTPTPTSTQTPTPT------PITTTTTTVTPTPTPTSTQTPTPTPITS 128
Score = 32.1 bits (71), Expect = 8.7
Identities = 31/107 (28%), Positives = 44/107 (40%), Gaps = 1/107 (0%)
Frame = -2
Query: 1091 TTIASPWPIGL-TISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
TT A+P P T +P+ + TT +PT T +S +T HT P+
Sbjct: 34 TTTATPTPTPTSTQTPTSTPITTTTTTATPTPTPTSTQTPTSTPITTTTTTHTP-TPTPT 92
Query: 914 ITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSST 771
TQTP P PI T + + + ST T P+ S + T
Sbjct: 93 STQTPTP------TPITTTTTTVTPTPTPTSTQTPTPTPITSNTTAMT 134
>gi|4505285|ref|NP_002448.1|| mucin 2, intestinal/tracheal
>gi|2506877|sp|Q02817|MUC2_HUMAN MUCIN 2 PRECURSOR
(INTESTINAL MUCIN 2) >gi|454154 (L21998) mucin [Homo
sapiens]
Length = 5179
Score = 37.1 bits (84), Expect = 0.26
Identities = 50/179 (27%), Positives = 67/179 (36%), Gaps = 2/179 (1%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT SP P T P +P TT +P+ P T T++ P+T T P
Sbjct: 1558 PTTTPSPPPTTTTTPPPTTTPSPPTTT-TPS---PPTITTTTPPPTTTPSPPTTTTTTPP 1613
Query: 914 ITQTPGPFPGSN--NAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTR 741
T TP P P + P T + + S T T P + +P +T T
Sbjct: 1614 PTTTPSP-PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTT-------TTP 1665
Query: 740 SAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGWPALTTC 561
S + +T T P PS P + T S SP+ TT P+ TT
Sbjct: 1666 SPPITTTTTPPPTTTPSSPITTT-PSPPTTTMTTPSPTTTPS-SPI---TTTTTPSSTTT 1720
Query: 560 P 558
P
Sbjct: 1721 P 1721
Score = 33.6 bits (75), Expect = 2.9
Identities = 30/110 (27%), Positives = 43/110 (38%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT PI T +P S T +P+ P T ++ SP+T PS
Sbjct: 1660 PTTTTPSPPITTTTTPPPTTTPSSPITTTPS---PPTTTMTTPSPTTTPSSPITTTTTPS 1716
Query: 914 ITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYL 765
T TP P P + P T + + +T+T P S ++T L
Sbjct: 1717 STTTPSPPPTTMTTPSPTTTPSPPT-----TTMTTLPPTTTSSPLTTTPL 1761
>gi|138350|sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR
>gi|73738|pir||VGBEX1 glycoprotein X precursor - equine
herpesvirus 1 (strain Ab4p) >gi|330862 (M86664) membrane
glycoprotein [Equine herpesvirus 1]
Length = 797
Score = 36.7 bits (83), Expect = 0.34
Identities = 35/133 (26%), Positives = 52/133 (38%), Gaps = 4/133 (3%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDT----TWSPTLRLPFTCATSSVSPSTLMERHTAFA 927
PTT +SP T SPS S T + +P+ T +S S T TA
Sbjct: 58 PTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTSTETTTTTPTAST 117
Query: 926 GLPSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRV 747
P+ T T P + + T + + +T T P+ + ++T + V
Sbjct: 118 TTPTTT-TAAPTTAATTTAVTTAASTSAETTTATATATSTPTTTTPTSTTTTTATTTVPT 176
Query: 746 TRSAALDSTLNLADTAA 696
T S D+T TAA
Sbjct: 177 TASTTTDTTTAATTTAA 193
Score = 33.6 bits (75), Expect = 2.9
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSP--TLRLPFTCATS---SVSPSTLMERHTA 933
AP+T +S I + S P+ +T +P T P T AT+ + + ST E TA
Sbjct: 90 APSTASSTTSIPTSTSTETTTTTPTASTTTPTTTTAAPTTAATTTAVTTAASTSAETTTA 149
Query: 932 FAGLPSITQTPGPFPGSNN-------APIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSS 774
A S T P + T +D + + +T T A + A + ++
Sbjct: 150 TATATSTPTTTTPTSTTTTTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATTTAAT 209
Query: 773 TYLAS*VRVTRSAALDSTLNLADT 702
T A+ T +AA S+ A T
Sbjct: 210 TTAATTTAATTTAATTSSATTAAT 233
>gi|563375|emb|CAA84031| (Z34277) mucin [Homo sapiens]
Length = 477
Score = 36.4 bits (82), Expect = 0.44
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Frame = -2
Query: 1103 GCAPTTIASPWPIGLTISPSRRRCAPSDTTWS------------PTLRLPFTCATSSVSP 960
GC T+ P+ +PS R +P+ +T S T P T TS+ +
Sbjct: 125 GCPVTST----PVTAPSTPSGRATSPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTSAPTT 180
Query: 959 STLMERHTAFAGLPSITQTPGPFPGSNNAPIG-TCSDDIDSVLSGISTLTV-APSGAWSK 786
ST T+ P+ + T P ++AP T S S +S +T + AP+ + +
Sbjct: 181 STTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTS 240
Query: 785 APSSTYLAS*VRVTRSAALDSTLNLADTA 699
P+++ ++ T SA ST + T+
Sbjct: 241 FPTTSTTSATTTSTTSAPTSSTTSTPQTS 269
>gi|6458143|gb|AAF10038.1|AE001904_14 (AE001904) hypothetical protein
[Deinococcus radiodurans]
Length = 839
Score = 35.6 bits (80), Expect = 0.76
Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 1/164 (0%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPST-LMERHTAFAGLP 918
P +P P +P+ P+ T +P + P A ++ +P+T G P
Sbjct: 209 PAPTRTPPPQAARPTPNAPAQTPAPATQAPAAQTPTAQAPATQTPATPAPAAQRPAGGAP 268
Query: 917 SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRS 738
S P P P NAP G+ + S+ APS P TR
Sbjct: 269 S----PAPAPAQANAPAGSV---VPEATVPESSTPAAPSAQTPPTP-----------TRE 310
Query: 737 AALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPV 603
A A ++ P A S+P+AGR + + S SPV
Sbjct: 311 TAQTEASPAAPNSSAAAPNEPA--SEPVAGRPGTAASSPESASPV 353
>gi|2879765|emb|CAB10128.1| (Z97209) hypothetical ser-thr rich protein
[Schizosaccharomyces pombe]
Length = 263
Score = 35.2 bits (79), Expect = 1.00
Identities = 45/156 (28%), Positives = 75/156 (47%), Gaps = 7/156 (4%)
Frame = -2
Query: 1103 GCAPTTIASPWP------IGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMER 942
G A T +SP+ + T+S S + S + SP+ F+ TS++S S+ E
Sbjct: 93 GSATATSSSPYYSNSSIIVPTTVSTSG---SVSSFSSSPSPTSSFS-GTSALSSSSNEET 148
Query: 941 HTAFAGLPSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTL-TVAPSGAWSKAPSSTYL 765
T +T T P + TCS + +S +ST TV+ SG+ S + +STY
Sbjct: 149 TTT----TQVTYTTSPEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYP 204
Query: 764 AS*VRVTRSAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVS 636
+S + +T S S+++ + +A + + P AG S S
Sbjct: 205 SSTLSMTTSHLSSSSVH-SSSAHSSSSRSSSMSLPPSAGSSTS 246
>gi|2114321|dbj|BAA20037| (D88733) membrane glycoprotein [Equine
herpesvirus 1]
Length = 866
Score = 35.2 bits (79), Expect = 1.00
Identities = 62/330 (18%), Positives = 92/330 (27%), Gaps = 8/330 (2%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLME----RHTAFA 927
PTT +SP T SPS S T + + +T+S+ ST E TA
Sbjct: 58 PTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTSTETTTTTPTAST 117
Query: 926 GLPSITQTPGPFPGSNNAPIGTCSDDIDS----VLSGISTLTVAPSGAWSKAPSSTYLAS 759
P+ T T P + + T + S + +T T P+ + ++T +
Sbjct: 118 TTPT-TTTAAPTTAATTTAVTTAASTAASTSAETTTATATATSTPTTTTPTSTTTTTATT 176
Query: 758 *VRVTRSAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGW 579
V T S D+T TAA + A + + T A+ + T
Sbjct: 177 TVPTTASTTTDTTTAATTTAA-TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT 235
Query: 578 PALTTCPGXXXXXXXXXXXXARRMA*LNVFXXXXXXXXXXXXXXXXXXXXXXXXXXADVE 399
A TT A A
Sbjct: 236 AATTTAATTSSATTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTA 295
Query: 398 TTPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKPKSIGSMLMRGWPRLTICPVSTKR 219
T P S GS G T P ++
Sbjct: 296 ATTTAATTTAATTTAATTTAATTTAATTTAATTTGSPTS-GSTSTTG--ASTSTPSASTA 352
Query: 218 FSTLPDTRKPRSL*TRAATTPVNDRDVANAP*TATTLT 105
S P + + T + TP + A + A T T
Sbjct: 353 TSATPTSTSTSAAATTSTPTPTSAATSAESTTEAPTST 390
>gi|95799|pir||S18536 envelope protein - Escherichia coli
>gi|228462|prf||1804337A envC gene [Escherichia coli]
Length = 384
Score = 35.2 bits (79), Expect = 1.00
Identities = 32/153 (20%), Positives = 47/153 (29%)
Frame = +1
Query: 73 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 252
H +P+ +V+ ++ G A +++ +VSG VL R G V+
Sbjct: 33 HVGEPQVTVHIVKTAPLE----VKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQA 88
Query: 253 GQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXX 432
GQ L IDP +RY LV +S YDQ
Sbjct: 89 GQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIAD 148
Query: 433 XXXXXXXXXXXXXXXXXXRNTLSYAILLADADG 531
R L+Y + A G
Sbjct: 149 ARQADAAVIAAKATVESARINLAYTKVTAPISG 181
>gi|1582765|prf||2119294A YFW1 gene [Saccharomyces cerevisiae]
Length = 605
Score = 34.8 bits (78), Expect = 1.3
Identities = 41/176 (23%), Positives = 69/176 (38%)
Frame = -2
Query: 1091 TTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSI 912
+T +S + +I+ S TT SPTL T ++S +PST + LP
Sbjct: 124 STESSVYVSSSSITSSSSTSIVDTTTISPTLTSTSTTPSTSTTPST-----DITSALPLT 178
Query: 911 TQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRSAA 732
T T S + P T S + + ST T + + +ST ++ + + S++
Sbjct: 179 TATTTSTKLSTSIPTSTTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSS 238
Query: 731 LDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRARRTTGWPALTT 564
ST +A ++ + S S +S +P + TT P TT
Sbjct: 239 SSSTPTTTSSAP------ISTSTTSSTSTSTSTTSPTSSSAPTSSSNTT--PTSTT 286
>gi|2853293 (AF007190) intestinal mucin [Homo sapiens]
Length = 513
Score = 34.8 bits (78), Expect = 1.3
Identities = 31/128 (24%), Positives = 55/128 (42%)
Frame = -2
Query: 1085 IASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQ 906
+ SP P+ +I+P+ + TT+ PT + TSS+ ST +PS
Sbjct: 2 MTSPPPVSSSITPTNTMTSMRTTTYWPTATNTLSPLTSSILSST---------PVPSTEM 52
Query: 905 TPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRSAALD 726
+N P+ T + ++L+ I+ T + +P+S S +T S ++
Sbjct: 53 ITS--HTTNTTPLSTL---VTTLLTTITRSTPTSETTYPTSPTSIVSDSTTEITYSTSIT 107
Query: 725 STLNLADT 702
TL+ A T
Sbjct: 108 GTLSTATT 115
>gi|6321759|ref|NP_011835.1|WSC4| Putative integral membrane protein
containing novel cysteine motif. Similarity to SLG1
(WSC1), WSC2 and WSC3; Wsc4p
>gi|731607|sp|P38739|YHC8_YEAST HYPOTHETICAL 63.8 KD
PROTEIN IN GUT1-RIM1 INTERGENIC REGION PRECURSOR
>gi|626575|pir||S48940 hypothetical protein YHL028w -
yeast (Saccharomyces cerevisiae) >gi|2289857 (U11583)
Similiar to mucin and several other Ser-Thr-rich proteins
[Saccharomyces cerevisiae]
Length = 605
Score = 33.6 bits (75), Expect = 2.9
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Frame = -2
Query: 1091 TTIASPWPIGLTISPSRRRCAPSDTTWSPTLR----LPFTCATSSVSPSTLMERHTAFAG 924
+T +S + +I+ S TT SPTL P T A++S +PST +
Sbjct: 124 STESSVYVSSSSITSSSSTSIVDTTTISPTLTSTSTTPLTTASTSTTPST-----DITSA 178
Query: 923 LPSITQT------PGPFPGSNNAPIGTCSDDID--SVLSGISTLTVAPSGAWSKAPSSTY 768
LP+ T T P S + T S SV S ST T S +S+
Sbjct: 179 LPTTTSTKLSTSIPTSTTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSS 238
Query: 767 LAS*VRVTRSAAL--DSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSPVRAR 594
+S T SA + +T + + + + P + + P+ S +T S S +
Sbjct: 239 SSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTPTSTTFTTTSPSTAPSS 298
Query: 593 RTTGWPALTTCP 558
T + + T P
Sbjct: 299 TTVTYTSTTASP 310
>gi|6671553|ref|NP_031480.1|| adaptor-related protein complex AP-1,
beta 1 subunit >gi|2398720|emb|CAA69224| (Y07919)
beta-prime-adaptin protein [Mus musculus]
Length = 943
Score = 33.6 bits (75), Expect = 2.9
Identities = 25/76 (32%), Positives = 35/76 (45%), Gaps = 4/76 (5%)
Frame = -2
Query: 926 GLPSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLT---VAPSGAWSKAPSSTYLAS* 756
G PS + P P API + D+ + SG+ TL+ VAP W A + L
Sbjct: 673 GAPSASVAAAPAPARLGAPISSGLSDLFDLTSGVGTLSGSYVAPKAVWLPAMKAKGLEIS 732
Query: 755 VRVTRSA-ALDSTLNLADTA 699
TR A ++ L L + A
Sbjct: 733 GTFTRQAGSISMDLQLTNKA 752
>gi|399021|sp|P25304|AGRI_RAT AGRIN PRECURSOR >gi|279665|pir||AGRT
agrin - rat
Length = 1959
Score = 33.6 bits (75), Expect = 2.9
Identities = 19/74 (25%), Positives = 33/74 (43%)
Frame = -2
Query: 1085 IASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQ 906
++ PW + + P + D W PT FT A + + + R T + LP+ +
Sbjct: 1122 VSRPWALAVR-RPLQEHVRFLDFDWFPTF---FTGAATGTTAAMATARATTVSRLPASSV 1177
Query: 905 TPGPFPGSNNAPIG 864
TP +P + P+G
Sbjct: 1178 TPRVYPSHTSRPVG 1191
Score = 32.1 bits (71), Expect = 8.7
Identities = 17/45 (37%), Positives = 21/45 (45%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVS 963
+P + WP L ISP P T W P L +P T A S V+
Sbjct: 900 SPGSTTHDWPTPLPISPHTTVSIPRSTAW-PVLTVPPTAAASDVT 943
>gi|202799 (M64780) agrin [Rattus norvegicus]
Length = 1937
Score = 33.6 bits (75), Expect = 2.9
Identities = 19/74 (25%), Positives = 33/74 (43%)
Frame = -2
Query: 1085 IASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQ 906
++ PW + + P + D W PT FT A + + + R T + LP+ +
Sbjct: 1119 VSRPWALAVR-RPLQEHVRFLDFDWFPTF---FTGAATGTTAAMATARATTVSRLPASSV 1174
Query: 905 TPGPFPGSNNAPIG 864
TP +P + P+G
Sbjct: 1175 TPRVYPSHTSRPVG 1188
Score = 32.1 bits (71), Expect = 8.7
Identities = 17/45 (37%), Positives = 21/45 (45%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVS 963
+P + WP L ISP P T W P L +P T A S V+
Sbjct: 897 SPGSTTHDWPTPLPISPHTTVSIPRSTAW-PVLTVPPTAAASDVT 940
>gi|6458444|gb|AAF10314.1|AE001929_7 (AE001929) conserved hypothetical
protein [Deinococcus radiodurans]
Length = 387
Score = 33.6 bits (75), Expect = 2.9
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 1/176 (0%)
Frame = +1
Query: 496 LSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQA 675
LS + A G V + L E G+ G PV+RL G A V +P A+ +
Sbjct: 205 LSRTAVRAPFAGTVADVLTEVGEFAGQGTPVIRLVDPGSVRARVGVPTADAAALTEGVKF 264
Query: 676 TL-YGNPQAAVSARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESIS 852
L YG + V S+ R +EG P+GA + + S
Sbjct: 265 NLSYGGKSYVATV---VDSSGIAGKDRLVPITATIEGGNA-LPVGAAARASYRATLG--S 318
Query: 853 SLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVS 1023
L +P AL G V+V + KA ++V+ + + V G L+ GD V+S
Sbjct: 319 GLLIPASALQVEGGENAVYV--ARSGKAEREVVQVVAESGNRVVVSG-LQDGDAVIS 372
>gi|202800 (M64780) agrin [Rattus norvegicus]
Length = 1940
Score = 33.6 bits (75), Expect = 2.9
Identities = 19/74 (25%), Positives = 33/74 (43%)
Frame = -2
Query: 1085 IASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQ 906
++ PW + + P + D W PT FT A + + + R T + LP+ +
Sbjct: 1122 VSRPWALAVR-RPLQEHVRFLDFDWFPTF---FTGAATGTTAAMATARATTVSRLPASSV 1177
Query: 905 TPGPFPGSNNAPIG 864
TP +P + P+G
Sbjct: 1178 TPRVYPSHTSRPVG 1191
Score = 32.1 bits (71), Expect = 8.7
Identities = 17/45 (37%), Positives = 21/45 (45%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVS 963
+P + WP L ISP P T W P L +P T A S V+
Sbjct: 900 SPGSTTHDWPTPLPISPHTTVSIPRSTAW-PVLTVPPTAAASDVT 943
>gi|5541863|emb|CAB51071.1| (AL096857) hypothetical protein [Homo
sapiens]
Length = 2701
Score = 33.2 bits (74), Expect = 3.9
Identities = 26/109 (23%), Positives = 44/109 (39%), Gaps = 1/109 (0%)
Frame = -2
Query: 1055 ISPSRRRCAPSDTTWS-PTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQTPGPFPGSN 879
+ PS P+ T+ P P +TS+ P++ + P + T P P S
Sbjct: 1754 LPPSTSASVPASTSAPLPATLTPVPASTSAPVPASTLA--------PVLASTSAPVPASP 1805
Query: 878 NAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRSAAL 729
AP+ + SV + S + S A + AP+ T + + V S +
Sbjct: 1806 LAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASVSTPASVTI 1855
>gi|5106074|dbj|BAA81385.1| (AP000064) 169aa long hypothetical protein
[Aeropyrum pernix]
Length = 169
Score = 33.2 bits (74), Expect = 3.9
Identities = 34/102 (33%), Positives = 44/102 (42%), Gaps = 2/102 (1%)
Frame = -2
Query: 1103 GCAPTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAG 924
GC +AS P+ L +SP PS T SP R TSS T + + A
Sbjct: 56 GCIGIPVASVPPLILNLSPGMPMSPPSKT--SPISRPASLTWTSS---GTAICQDLALNA 110
Query: 923 LPSITQTPGPFPGSNNAPIGTCSD--DIDSVLSGISTLTVAPSG 798
S++ +P P S+ T S + S L G TLT PSG
Sbjct: 111 SASVSSSPAASPRSSMLTSTTLSSRPSLTSALKG--TLTFLPSG 152
>gi|1582641|prf||2119210A mucin [Homo sapiens]
Length = 164
Score = 33.2 bits (74), Expect = 3.9
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLP 918
APTT + P T S + TT + + T +T + S ++ + T A
Sbjct: 58 APTTSTTSAPTTSTPSAPTTSTTLAPTTSTTSAPTTSTTSTPTSSTTSTPQTSTTSASTT 117
Query: 917 SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTV-APSGAWSKAPS 777
SIT PG P S T S S S +T T+ AP+ + + AP+
Sbjct: 118 SITSGPGTTP-SPVPTTSTTSAPTTSTTSAATTSTISAPTTSTTSAPT 164
>gi|4633127|gb|AAD26632.1|AF110134_1 (AF110134) GlsA [Volvox carteri
f. nagariensis] >gi|4633129|gb|AAD26633.1|AF110135_1
(AF110135) GlsA [Volvox carteri f. nagariensis]
Length = 748
Score = 32.8 bits (73), Expect = 5.1
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 965 SPSTLMERHTAFAGLPSITQTPG--PFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAW 792
SPS+ R A A P+ T T P G+ A G + + G+ VA SGAW
Sbjct: 620 SPSSSSARSKA-AKTPAATATAAGAPSEGTTEAAAGATTASSAAAAKGVKKAAVADSGAW 678
Query: 791 SKAPSSTYLAS 759
S+A +A+
Sbjct: 679 SEAQELALVAA 689
>gi|5912136|emb|CAB56002.1| (AL117579) hypothetical protein [Homo
sapiens]
Length = 253
Score = 32.8 bits (73), Expect = 5.1
Identities = 35/127 (27%), Positives = 56/127 (43%), Gaps = 16/127 (12%)
Frame = -2
Query: 1100 CAPTTIASPWPIGLTISPSRRRCA------PSDTTWSPTLRLPFTCATSSVSPSTLMERH 939
C+P ++ WP+ + +P PS SP L A + SP L+
Sbjct: 54 CSP--LSEAWPLTTSSAPPGEPALLPGPHEPSPPGGSPALLREDLAAATPASPLVLLPLE 111
Query: 938 TAFAGLPSITQTPGPFPGSNNAPIGTCSDDIDS-------VLSGISTLTVAPSGA---WS 789
T A P + +P P + AP+ D S + SG+ L SG+ +
Sbjct: 112 TRPAEEPQPSASPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVT 171
Query: 788 KAPSSTYLAS*VRVTRSAALDST 720
+AP + + R+ SA LD +
Sbjct: 172 QAPQAGQMVDTKRLKDSAVLDQS 194
>gi|2688026 (AE001125) membrane fusion protein (mtrC) [Borrelia
burgdorferi]
Length = 318
Score = 32.8 bits (73), Expect = 5.1
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Frame = +1
Query: 37 LLPLALTAC-GNNHAPDPRTEA--------PLVRVVAVQGAFATSRSFTGVVAARVQSDL 189
+L L L AC G+N D + P++ + +G + S G V +V++D+
Sbjct: 18 VLFLVLVACVGDNKLDDKNIDKEKESSYRFPVIAMKVKKGILSDYLSLNGDVDTKVKADI 77
Query: 190 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDP 279
GK+ + G V++GQ + ++DP
Sbjct: 78 FPDAVGKITSLRIKLGAYVQKGQIVATLDP 107
>gi|6409115|gb|AAF07848.1|AF201839_1 (AF201839) dynamin IIIbb isoform
[Rattus norvegicus]
Length = 869
Score = 32.8 bits (73), Expect = 5.1
Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSP-TLRLPFTCATSSVSPSTLMERHTAFAGL 921
AP + W + SRR PS TT TL P SS P+ + +G
Sbjct: 754 APPPVDDSW-----LQHSRRSPPPSPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGA 808
Query: 920 PSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWS-KAPSSTYLAS*VRVT 744
P + PGP P P SD + S T AP S + P S + +R
Sbjct: 809 PPVPFRPGPLP-----PFPNSSDSYGAPPQVPSRPTRAPPSVPSRRPPPSPTRPTIIRPL 863
Query: 743 RSAALD 726
S+ LD
Sbjct: 864 ESSLLD 869
>gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans]
Length = 961
Score = 32.8 bits (73), Expect = 5.1
Identities = 31/108 (28%), Positives = 48/108 (43%), Gaps = 9/108 (8%)
Frame = -2
Query: 1094 PTTIASPWPI---------GLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMER 942
PTT +P P T + S + +T S T P T TS+ S +T
Sbjct: 346 PTTSPTPTPTPSTTTTSTTSTTSTTSATSTTSTTSTTSTTSTTPTTSTTSTTSTTTPTPS 405
Query: 941 HTAFAGLPSITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSST 771
+ S T+T P P + + T S+ S L ST V+ + + +K P+S+
Sbjct: 406 PSPSTASSSTTETVTPSPKPSPSESSTTSE--TSSLPSTSTPVVSETPSETKTPTSS 460
>gi|5902008|ref|NP_008992.1|| serum constituent protein
>gi|462623|sp|Q00587|MSE5_HUMAN SERUM PROTEIN MSE55
>gi|284317|pir||A42973 serum protein MSE55 - human
>gi|338033 (M88338) serum protein [Homo sapiens]
>gi|4808221|emb|CAB42833.1| (AL022315) dJ1177I5.2 (serum
constituent protein MSE55) [Homo sapiens]
Length = 391
Score = 32.5 bits (72), Expect = 6.6
Identities = 23/102 (22%), Positives = 41/102 (39%)
Frame = -2
Query: 1070 PIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQTPGPF 891
P T +P+ AP+ P P T A +P +A A P+ P
Sbjct: 220 PAAETPAPAANPPAPTANPTGPAANPPATTA----NPPAPAANPSAPAATPTGPAANPPA 275
Query: 890 PGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYL 765
P +++ P G C + + + L ++ + +P G + P+ L
Sbjct: 276 PAASSTPHGHCPNGVTAGLGPVAEVKSSPVGGGPRGPAGPAL 317
>gi|6322611|ref|NP_012685.1|YJR151C| Yjr151cp
>gi|1352944|sp|P47179|YJ9P_YEAST HYPOTHETICAL 118.4 KD
PROTEIN IN BAT2-DAL5 INTERGENIC REGION PRECURSOR
>gi|1078284|pir||S57180 probable membrane protein YJR151c
- yeast (Saccharomyces cerevisiae)
>gi|1015903|emb|CAA89684| (Z49651) ORF YJR151c
[Saccharomyces cerevisiae]
Length = 1161
Score = 32.5 bits (72), Expect = 6.6
Identities = 29/112 (25%), Positives = 44/112 (38%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPS 915
PTT +P T S + S T+ + T T T+S + ST + + + S
Sbjct: 258 PTTSTTP-----TTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTSSTFSTSSASASSVIS 312
Query: 914 ITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS 759
T T S P T + D S +ST + A + S TY++S
Sbjct: 313 TTATTSTTFASLTTP-ATSTASTDHTTSSVSTTNAFTTSATTTTTSDTYISS 363
>gi|543415|pir||PC2022 mucin like protein Muc2 precursor - rat
(fragment) >gi|435535|emb|CAA82313| (Z29072) mucin
[Rattus norvegicus]
Length = 235
Score = 32.5 bits (72), Expect = 6.6
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Frame = -2
Query: 1097 APTTIASPWP------IGLTISPSRRRCAPS-----DTTWSPTLRLPFTCATSSVSPSTL 951
+PTT +P P I + S + + P+ T S T + P +T++V+P T
Sbjct: 87 SPTTTVTPTPETTTTQISTSTSTTTKITTPTPITETSTPISTTSQTPSPASTTTVTPVTT 146
Query: 950 MERHTAFAGLPSITQTPG--PFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPS 777
L + TQT P + P T + +V + T T P+ + P+
Sbjct: 147 STTTETSMSLSTTTQTTSATPIVTETSTPRSTTTQTPSTVSTTTGTPTTTPTIGKTTTPT 206
Query: 776 ST 771
ST
Sbjct: 207 ST 208
>gi|1176909|sp|Q09625|YS8A_CAEEL HYPOTHETICAL 84.3 KD PROTEIN ZK945.10
IN CHROMOSOME II >gi|3881895|emb|CAA88444.1| (Z48544)
similar to mucin [Caenorhabditis elegans]
Length = 796
Score = 32.5 bits (72), Expect = 6.6
Identities = 29/109 (26%), Positives = 48/109 (43%), Gaps = 1/109 (0%)
Frame = -2
Query: 1025 SDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLPSITQTPGPFPGSNNAPIGTCSDDI 846
S +T +PT T TS+V+ +T + T+ T T P + T
Sbjct: 275 STSTTTPTT----TTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTST 330
Query: 845 DSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRSAALDSTL-NLADTA 699
S + ++ T S + +PSST L++ + T + + STL +L D A
Sbjct: 331 ASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITSTLSSLPDNA 380
>gi|2493240|sp|O10341|Y091_NPVOP HYPOTHETICAL 29.3 KD PROTEIN (ORF92)
>gi|1911338 (U75930) unknown [Orgyia pseudotsugata
nuclear polyhedrosis virus]
Length = 279
Score = 32.5 bits (72), Expect = 6.6
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLR-LPFTCATSSVSPSTLMERHTAFAGLP 918
PT +P P T SP+ T SPTL P T S +PS + P
Sbjct: 59 PTPTPTPTP---TPSPTPTPALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTP 115
Query: 917 SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSST 771
S T TP P P P T + + T T +P+ + + PS T
Sbjct: 116 SPTPTPSPTPSPTPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPT 164
>gi|3257337|dbj|BAA30020| (AP000004) 128aa long hypothetical protein
[Pyrococcus horikoshii]
Length = 128
Score = 32.1 bits (71), Expect = 8.7
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -2
Query: 1028 PSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAG--LPS-ITQTPGPFP 888
P+ T PTLR P A+ S+SP TL+ T +G LPS +++ P P
Sbjct: 2 PTSITSQPTLRRPLIKASFSISPLTLVSLPTTTSGFFLPSLLSRVPKAIP 51
>gi|586667|sp|P37626|YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN
RHSB-PIT INTERGENIC REGION PRECURSOR (F355)
>gi|1073452|pir||S47707 hypothetical protein f355 -
Escherichia coli >gi|466624 (U00039) No definition line
found [Escherichia coli] >gi|1789900 (AE000424) putative
membrane protein [Escherichia coli]
Length = 355
Score = 32.1 bits (71), Expect = 8.7
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 511 LLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLY-- 684
L A DG V +AEPG+V++AG V+ + + +LP + G+A L
Sbjct: 214 LKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILD 273
Query: 685 GNPQAAVSARLRVLSNAADRVTRTYE 762
P + A + +++ A +T E
Sbjct: 274 AAPDLRIPATISFVASVAQFTPKTVE 299
>gi|107112|pir||A37232 mucin, tracheal (AMN-22) - human (fragment)
Length = 294
Score = 32.1 bits (71), Expect = 8.7
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Frame = -2
Query: 1094 PTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPS-TLMERHTAFAGLP 918
PT +P P +T + + P+ T+ P T T + +P+ T +R T +
Sbjct: 6 PTGTQTPTPTPITTTTTMVTPTPTITSTQTPTPTPITTTTVTPTPTPTSTQRTTPTSITT 65
Query: 917 SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTVAPSGAWSKAPSSTYLAS*VRVTRS 738
+ T TP P P ++ +T+T P+ ++ P++T +++ VT +
Sbjct: 66 TTTVTPTPTP-----------------ITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPT 108
Query: 737 AALDSTLNLADT 702
T L T
Sbjct: 109 PTPTGTQTLTPT 120
>gi|111978|pir||S24169 mucin - rat
Length = 292
Score = 32.1 bits (71), Expect = 8.7
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 18/176 (10%)
Frame = -2
Query: 1091 TTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPS---------TLMERH 939
TT +P P TI + + TT S + + P +T SPS TL
Sbjct: 75 TTSQTPTPTPTTIKETPTSTSTVPTTGSTSSKPPTGSSTPITSPSTPSPPTESTTLSSTP 134
Query: 938 TAFAGLPSITQTPG---PFPGSN------NAPIGTCSDDIDSVLSGISTLTVAPSGAWSK 786
S T +PG PF S+ + P T S + S T P+ ++
Sbjct: 135 VTTTATSSTTSSPGTTSPFATSSVSSTPPSPPSSTSGPTTSSGMPTSSKTTTGPTSPTTR 194
Query: 785 APSSTYLAS*VRVTRSAALDSTLNLADTAA*GLPYNVAWPSDPMAGRSVSGRYTIASRSP 606
PS++ S T + + L+ T + M S T++S SP
Sbjct: 195 PPSTSTPTSPTVPTSTTEAITQTRLSST------------TPTMETTRTSSWGTVSSASP 242
Query: 605 VRARRTTGWPALTT 564
+ + T W ++ T
Sbjct: 243 ITSPSTV-WTSIAT 255
>gi|6119822|gb|AAF04242.1|AF093228_1 (AF093228) Vps54 [Vibrio
cholerae]
Length = 94
Score = 32.1 bits (71), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 537 CRDTCRTWASGECRPASRAPGTH 605
C++ CR+W G CR A RA H
Sbjct: 68 CKEVCRSWGQGTCRCAQRAISHH 90
>gi|730843|sp|P40798|STC_DROME SHUTTLE CRAFT PROTEIN >gi|487400
(U09306) shuttle craft protein [Drosophila melanogaster]
Length = 1106
Score = 32.1 bits (71), Expect = 8.7
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Frame = +3
Query: 480 CR*EYVELRHPSCR--------CGWRRCRDTCRTWASGECRPASRAPGTHGGA*GDRVSA 635
C E + R SC+ CG +C+D+C +G CRP +P ++
Sbjct: 563 CTRESQDKRTYSCKDSCGQPLPCGHHKCKDSCH---AGSCRPCKLSPEQITSCPCGKIPV 619
Query: 636 *DTASSHWITWPGDVVRQSSGCCVSKIESAIQCG*PRDPYLRGQVCARRCLAPC 797
S + D + G C ++CG P P+ G C PC
Sbjct: 620 PAGQRSSCL----DPIPTCEGIC----SRTLRCGKPAHPHQCGSKCHLGQCPPC 665
>gi|4972055|emb|CAB43923.1| (AL078470) putative protein [Arabidopsis
thaliana]
Length = 575
Score = 32.1 bits (71), Expect = 8.7
Identities = 29/104 (27%), Positives = 46/104 (43%), Gaps = 3/104 (2%)
Frame = +1
Query: 718 RVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKG 897
R+LS + + +++RY + L+APLG+ S L+ A+ G+
Sbjct: 75 RMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGED 134
Query: 898 PGVW---VIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLG 1029
+W +D KPA A R +V + A V LKV D + G
Sbjct: 135 IIIWRHKWLDSKPASAALRMQRV--PPQEYASVSSILKVSDLIDESG 179
>gi|2135764|pir||I53641 mucin - human (fragment) >gi|945219 (L46721)
mucin [Homo sapiens]
Length = 164
Score = 32.1 bits (71), Expect = 8.7
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = -2
Query: 1097 APTTIASPWPIGLTISPSRRRCAPSDTTWSPTLRLPFTCATSSVSPSTLMERHTAFAGLP 918
APTT + P T S + TT + + T +T + S ++ + T A
Sbjct: 58 APTTSTTSAPTTSTPSAPTTSTTLAPTTSTTSAPTTSTTSTPTSSTTSTPQTSTTSASTT 117
Query: 917 SITQTPGPFPGSNNAPIGTCSDDIDSVLSGISTLTV-APSGAWSKAPS 777
SIT PG P S T S S S +T T+ AP+ + + AP+
Sbjct: 118 SITCGPGTTP-SPVPTTSTTSAPTTSTTSAATTSTISAPTTSTTSAPT 164
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295784175
Number of Sequences: 443958
Number of extensions: 7064985
Number of successful extensions: 23772
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 23635
Number of HSP's gapped (non-prelim): 139
length of query: 369
length of database: 136,619,797
effective HSP length: 55
effective length of query: 313
effective length of database: 112,202,107
effective search space: 35119259491
effective search space used: 35119259491
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)