BLASTX 2.0.10 [Aug-26-1999]
Query= XF-09C12-GL14
(1827 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1169397|sp|P43746|DP3X_HAEIN DNA POLYMERASE III SUBUNIT GAMM... 386 e-106
gi|2494197|sp|P74876|DP3X_SALTY DNA POLYMERASE III SUBUNIT TAU ... 384 e-105
gi|118808|sp|P06710|DP3X_ECOLI DNA POLYMERASE III SUBUNIT TAU [... 374 e-102
gi|1527142 (U66040) DNA polymerase III gamma subunit [Salmonell... 362 4e-99
gi|581255|emb|CAA28175| (X04487) alternate dnaZX protein (AA 1-... 333 2e-90
gi|6466222|gb|AAF12838.1|AF203881_11 (AF203881) DNA polymerase ... 260 2e-68
gi|1293572 (U49738) DNA polymerase III tau homolog DnaX [Caulob... 249 7e-65
gi|4155207 (AE001497) DNA POLYMERASE III SUBUNITS GAMMA AND TAU... 248 1e-64
gi|2313841|gb|AAD07767.1| (AE000584) DNA polymerase III gamma a... 248 1e-64
gi|98292|pir||S13786 DNA-directed DNA polymerase (EC 2.7.7.7) I... 242 1e-62
gi|118807|sp|P09122|DP3X_BACSU DNA POLYMERASE III SUBUNIT GAMMA... 242 1e-62
gi|580855|emb|CAA29958| (X06803) dnaZX-like ORF put. DNA polyme... 242 1e-62
gi|2984127 (AE000759) DNA polymerase III gamma subunit [Aquifex... 241 1e-62
gi|4981209|gb|AAD35768.1|AE001741_1 (AE001741) DNA polymerase I... 237 2e-61
gi|3861390|emb|CAA15289| (AJ235273) DNA POLYMERASE III SUBUNITS... 226 5e-58
gi|3150103|emb|CAA19155.1| (AL023596) DNA polymerase III subuni... 220 3e-56
gi|6460225|gb|AAF11953.1|AE002071_7 (AE002071) DNA polymerase I... 219 5e-56
gi|3328753|gb|AAC67929.1| (AE001306) DNA Pol III Gamma and Tau ... 218 1e-55
gi|4376294|gb|AAD18193| (AE001589) DNA Polymerase III Gamma and... 212 6e-54
gi|5918469|emb|CAB56347.1| (AL118514) DNA polymerase III subuni... 212 6e-54
gi|6014997|sp|O69688|DP3X_MYCTU DNA POLYMERASE III SUBUNIT GAMM... 208 1e-52
gi|3323329 (AE001268) DNA polymerase III, subunits gamma and ta... 204 2e-51
gi|2583049 (AF025391) DNA polymerase III holoenzyme tau subunit... 203 4e-51
gi|2688379 (AE001151) DNA polymerase III, subunits gamma and ta... 201 1e-50
gi|2494198|sp|P75177|DP3X_MYCPN DNA POLYMERASE III SUBUNIT GAMM... 186 4e-46
gi|1352305|sp|P47659|DP3X_MYCGE DNA POLYMERASE III SUBUNIT GAMM... 178 2e-43
gi|3184291|gb|AAC18938.1| (AC004136) similar to prokaryotic DNA... 146 4e-34
gi|1652627|dbj|BAA17547| (D90907) DNA polymerase III subunit [S... 142 1e-32
gi|4220511|emb|CAA22984| (AL035356) DNA polymerase III like pro... 141 1e-32
gi|4539401|emb|CAB37467.1| (AL035526) putative protein [Arabido... 124 2e-27
gi|2105050|emb|CAB08836| (Z95436) hypothetical protein Rv3644c ... 99 8e-20
gi|3097239|emb|CAA18816.1| (AL023093) hypothetical protein MLCB... 96 9e-19
gi|1360895|pir||S58488 DNA polymerase III chain tau - Caulobact... 95 2e-18
gi|586870|sp|P37540|HOLB_BACSU DNA POLYMERASE III, DELTA' SUBUN... 93 8e-18
gi|145799 (L04577) DNA polymerase III delta prime subunit [Esch... 93 8e-18
gi|2506368|sp|P28631|HOLB_ECOLI DNA POLYMERASE III, DELTA' SUBU... 93 8e-18
gi|4539558|emb|CAB38477.1| (AL035636) putative DNA polymerase [... 89 9e-17
gi|3367626|emb|CAA07618| (AJ007712) replication factor C subuni... 88 3e-16
gi|4506491|ref|NP_002907.1|| replication factor C (activator 1)... 88 3e-16
gi|6324039|ref|NP_014109.1|RFC3| Subunit 3 of Replication Facto... 86 8e-16
gi|6318311|gb|AAF06832.1|AF099189_2 (AF099189) DNA polymerase I... 85 2e-15
gi|6016239|sp|O69170|HOLB_YERPE DNA POLYMERASE III, DELTA' SUBU... 85 2e-15
gi|283966|pir||A45253 activator 1 37K chain - human 82 1e-14
gi|1074027|pir||D64069 DNA polymerase III delta prime subunit (... 82 2e-14
gi|2506369|sp|P43748|HOLB_HAEIN DNA POLYMERASE III, DELTA' SUBU... 82 2e-14
gi|5105207|dbj|BAA80521.1| (AP000061) 346aa long hypothetical r... 81 3e-14
gi|2621290 (AE000811) replication factor C, small subunit [Met... 80 4e-14
gi|2506628|sp|P45526|YCAJ_ECOLI HYPOTHETICAL 49.6 KD PROTEIN IN... 78 2e-13
gi|1653573|dbj|BAA18486| (D90914) DNA polymerase III subunit [S... 78 3e-13
gi|4468733|emb|CAB38106| (AJ012839) replication factor C subuni... 76 7e-13
gi|6459682|gb|AAF11452.1|AE002029_1 (AE002029) conserved hypoth... 76 9e-13
gi|1732451|dbj|BAA11313| (D78208) hypothetical protein ORF306 [... 76 1e-12
gi|5263320|gb|AAD41422.1|AC007727_11 (AC007727) Similar to gb|M... 74 4e-12
gi|1703054|sp|P53034|AC14_DROME ACTIVATOR 1 40 KD SUBUNIT (REPL... 73 6e-12
gi|2648471 (AE000961) activator 1, replication factor C, 35 KD ... 73 7e-12
gi|2983903 (AE000744) hypothetical protein [Aquifex aeolicus] 73 1e-11
gi|2662601|gb|AAB88360.1| (AF036699) strong similarity to the a... 73 1e-11
gi|6322528|ref|NP_012602.1|RFC2| Subunit 2 of Replication Facto... 71 2e-11
gi|6015708|emb|CAB57535.1| (Y18930) activator 1, replication fa... 70 5e-11
gi|6324478|ref|NP_014547.1|RFC4| Subunit 4 of Replication Facto... 70 6e-11
gi|4106657|emb|CAA22597| (AL035064) activator 1 subunit (replic... 69 1e-10
gi|2398811|emb|CAB16188.1| (Z99126) hypothetical protein [Schiz... 67 4e-10
gi|6598834|gb|AAF18689.1|AC010795_4 (AC010795) putative replica... 67 6e-10
gi|1703053|sp|P53033|AC14_CHICK ACTIVATOR 1 40 KD SUBUNIT (REPL... 66 1e-09
gi|1708282|sp|P52024|HOLB_PSEAE DNA POLYMERASE III, DELTA' SUBU... 66 1e-09
gi|2649392 (AE001022) activator 1, replication factor C, 53 KD ... 66 1e-09
gi|1175611|sp|P45262|YCAJ_HAEIN HYPOTHETICAL PROTEIN HI1590 >gi... 65 2e-09
gi|2829884 (AC002396) Hypothetical protein [Arabidopsis thaliana] 65 2e-09
gi|4506487|ref|NP_002905.1|| replication factor C (activator 1)... 64 5e-09
gi|539678|pir||A42700 replication factor C - human 64 5e-09
gi|1703051|sp|P53016|AC12_CAEEL PUTATIVE ACTIVATOR 1 37 KD SUBU... 63 6e-09
gi|4972952|gb|AAD34861.1|AF139987_4 (AF139987) replication fact... 63 8e-09
gi|2688709 (AE001176) B. burgdorferi predicted coding region BB... 60 5e-08
gi|1350581|sp|Q09843|RFC2_SCHPO PROBABLE ACTIVATOR 1 41 KD SUBU... 59 9e-08
gi|6460143|gb|AAF11878.1|AE002064_9 (AE002064) DNA polymerase I... 59 9e-08
gi|2496491|sp|Q50739|YP59_MYCTU HYPOTHETICAL 47.5 KD PROTEIN RV... 59 2e-07
gi|6677723|ref|NP_031396.1|| replication factor C (activator 1)... 58 3e-07
gi|600046|emb|CAA55489| (X78898) SRC strictly conserved sequenc... 57 4e-07
gi|6324111|ref|NP_014181.1|YNL218W| Ynl218wp >gi|1730822|sp|P40... 57 4e-07
gi|4376545|gb|AAD18421| (AE001612) DNA Polymerase III Gamma and... 57 5e-07
gi|3328592|gb|AAC67779.1| (AE001292) DNA Pol III Gamma and Tau ... 56 1e-06
gi|2314168|gb|AAD08068.1| (AE000610) conserved hypothetical hel... 55 1e-06
gi|3136020|emb|CAA19102.1| (AL023591) hypothetical protein MLCB... 55 1e-06
gi|3845290 (AE001420) replication factor C, 40 kDa subunit (rep... 55 2e-06
gi|465793|sp|P34429|AC11_CAEEL PUTATIVE ACTIVATOR 1 36 KD SUBUN... 55 2e-06
gi|6539526|dbj|BAA88155.1| (AB034755) replication factor C larg... 55 2e-06
gi|2496262|sp|P75105|Y007_MYCPN HYPOTHETICAL PROTEIN MG007 HOMO... 54 3e-06
gi|5457544|emb|CAB49035.1| (AJ248283) activator 1, replication ... 54 4e-06
gi|4154931 (AE001474) putative [Helicobacter pylori J99] 53 5e-06
gi|2621289 (AE000811) replication factor C, large subunit [Met... 53 7e-06
gi|3256498|dbj|BAA29181.1| (AP000001) 855aa long hypothetical r... 53 7e-06
gi|4587466|gb|AAD25733.1|AF100324_1 (AF100324) DNA polymerase I... 52 2e-05
gi|4981020|gb|AAD35593.1|AE001727_5 (AE001727) conserved hypoth... 51 4e-05
gi|3322812 (AE001227) DNA polymerase III, gamma and tau subunit... 50 5e-05
gi|4981299|gb|AAD35853.1|AE001746_14 (AE001746) DNA polymerase ... 50 6e-05
gi|5420387|emb|CAB46679.1| (AJ243459) proteophosphoglycan [Leis... 50 8e-05
gi|4455787|emb|CAB36876.1| (AL035536) putative DNA polymerase a... 49 1e-04
gi|4494101|emb|CAB39134.1| (Z98978) replication factor 3 subuni... 49 1e-04
gi|98790|pir||S11163 ATP-dependent proteinase homolog - Mycobac... 49 1e-04
gi|3982831 (AF083343) 101 kDa heat shock protein; HSP101 [Nicot... 48 3e-04
gi|1708857|sp|P42425|LON2_BACSU ATP-DEPENDENT PROTEASE LA HOMOL... 48 3e-04
gi|6647441|sp|O06286|CLPC_MYCTU PROBABLE ATP-DEPENDENT CLP PROT... 47 4e-04
gi|140227|sp|P24428|CLPC_MYCLE PROBABLE ATP-DEPENDENT CLP PROTE... 47 4e-04
gi|3834293 (U80846) No definition line found [Caenorhabditis el... 47 5e-04
gi|6433960|emb|CAB60731.1| (Y19185) aczonin [Mus musculus] 46 0.001
gi|4506489|ref|NP_002906.1|| replication factor C (activator 1)... 46 0.001
gi|5679088|gb|AAD46852.1|AF160912_1 (AF160912) BcDNA.LD06837 [D... 46 0.001
gi|6433962|emb|CAB60732.1| (Y19186) aczonin [Mus musculus] 46 0.001
gi|3834294 (U80846) No definition line found [Caenorhabditis el... 46 0.001
gi|1085432|pir||S55315 mucin (clone PGM-2A) - pig >gi|2136504|p... 45 0.002
gi|2498878|sp|Q56313|RUVB_THEMA HOLLIDAY JUNCTION DNA HELICASE ... 45 0.002
gi|5457543|emb|CAB49034.1| (AJ248283) activator 1, replication ... 45 0.002
gi|586900|sp|P37571|MECB_BACSU NEGATIVE REGULATOR OF GENETIC CO... 45 0.002
gi|3874848|emb|CAA94339.1| (Z70307) Similarity to Human activat... 45 0.002
gi|6322209|ref|NP_012284.1|MUC1| cell surface flocculin with st... 45 0.003
gi|3322841 (AE001230) ATPase (clpC) [Treponema pallidum] 44 0.004
gi|2498874|sp|P75242|RUVB_MYCPN HOLLIDAY JUNCTION DNA HELICASE ... 44 0.005
gi|6403465|gb|AAF07822.1|AF138789_1 (AF138789) multidomain pres... 43 0.006
gi|1563721|emb|CAA69406| (Y08238) heat shock protein [Helicobac... 43 0.006
gi|1314297 (U40604) ClpC ATPase [Listeria monocytogenes] 43 0.008
gi|118810|sp|P04526|DPA4_BPT4 DNA POLYMERASE ACCESSORY PROTEIN ... 43 0.008
gi|6319562|ref|NP_009644.1|RFC5| Subunit 5 of Replication Facto... 43 0.008
gi|6458295|gb|AAF10176.1|AE001918_1 (AE001918) Holliday junctio... 43 0.010
gi|4585605|emb|CAB40873.1| (AL049628) putative Clp-family ATP-b... 43 0.010
gi|5420389|emb|CAB46680.1| (AJ243460) proteophosphoglycan [Leis... 43 0.010
gi|3150046 (AF016634) ClpB chaperone homolog [Lactococcus lacti... 43 0.010
gi|755163 (U16134) ClpC [Synechococcus sp.] 43 0.010
gi|2493732|sp|P71404|CLPB_HELPY CLPB PROTEIN >gi|2313356|gb|AAD... 43 0.010
gi|4154766 (AE001462) HEAT SHOCK PROTEIN [Helicobacter pylori J99] 43 0.010
gi|871784 (L34677) Clp-like ATP-dependent protease binding subu... 42 0.014
gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans] 42 0.014
gi|2606019 (AF030027) 71 [Equine herpesvirus 4] 42 0.018
gi|4753885|emb|CAB42048.1| (AL049754) putative ATP-dependent pr... 42 0.018
gi|1168973|sp|P44403|CLPB_HAEIN CLPB PROTEIN >gi|1073890|pir||F... 42 0.018
gi|5231279|dbj|BAA81745.1| (AB012390) ClpB [Thermus thermophilus] 42 0.018
gi|3913042|sp|Q51416|AMIB_PSEAE ATP-DEPENDENT PROTEASE ATP-BIND... 41 0.023
gi|5302773|emb|CAB46061.1| (Z97336) heat shock protein like [Ar... 41 0.023
gi|2493734|sp|P74361|CLPB_SYNY3 CLPB PROTEIN >gi|1653543|dbj|BA... 41 0.023
gi|3913513|sp|O64301|DPA4_BPR69 DNA POLYMERASE ACCESSORY PROTEI... 41 0.031
gi|79833|pir||JQ0405 hypothetical 119.5K protein (uvrA region) ... 41 0.031
gi|6458849|gb|AAF10687.1|AE001961_6 (AE001961) ATP-dependent Cl... 41 0.040
gi|134780|sp|P14328|SP96_DICDI SPORE COAT PROTEIN SP96 >gi|8414... 41 0.040
gi|3676826 (AF092449) mucin-like protein [Heterodera glycines] 41 0.040
gi|530207 (L35272) heat shock protein [Glycine max] 40 0.053
gi|3876064|emb|CAA96634.1| (Z72507) similar to Thrombospondin t... 40 0.053
gi|5689365|dbj|BAA83073.1| (AB024075) B120 [Homo sapiens] 40 0.053
gi|5174395|ref|NP_006006.1|| Brain protein 120 >gi|2588991|dbj|... 40 0.053
gi|1173331|sp|P44631|RUVB_HAEIN HOLLIDAY JUNCTION DNA HELICASE ... 40 0.069
gi|1326353 (U58748) coded for by C. elegans cDNA yk43c5.3 [Caen... 40 0.069
gi|727373 (U22817) RuvB Protein [Thermus aquaticus thermophilus] 40 0.069
gi|2498879|sp|Q56214|RUVB_THETH HOLLIDAY JUNCTION DNA HELICASE ... 40 0.069
gi|4586805|dbj|BAA76480.1| (AB015236) RuvB [Thermus thermophilus] 40 0.069
gi|893242 (M36941) C hordein [Hordeum vulgare] 40 0.069
gi|6685950|sp|Q9X719|RUVB_DEIRA HOLLIDAY JUNCTION DNA HELICASE ... 40 0.069
gi|2117310|emb|CAB09116.1| (Z95620) hypothetical protein [Schiz... 39 0.090
gi|2635199|emb|CAB14695| (Z99117) similar to hypothetical prote... 39 0.090
gi|2498460|sp|Q50360|HMW3_MYCPN CYTADHERENCE HIGH MOLECULAR WEI... 39 0.090
gi|6323002|ref|NP_013074.1|HSP104| 104 kDa heat shock protein; ... 39 0.090
gi|228154|prf||1717391A protein Hsp104 [Saccharomyces cerevisiae] 39 0.090
gi|15379|emb|CAA25341| (X00769) g44 protein [coliphage T4] 39 0.090
gi|3417427|emb|CAA20314.1| (AL031262) putative glucoamylase [Sc... 39 0.090
gi|3122842|sp|O32055|RUVB_BACSU HOLLIDAY JUNCTION DNA HELICASE ... 39 0.090
gi|6007542|gb|AAF00951.1|AF183139_1 (AF183139) trucnated type 2... 39 0.12
gi|138350|sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR >gi|737... 39 0.12
gi|2565065 (U80745) CTG7a [Homo sapiens] 39 0.12
gi|330130 (M17921) latency associated transcript (LAT) ORF-2 [H... 39 0.12
gi|2134123|pir||I51618 nucleolar phosphoprotein - African clawe... 39 0.12
gi|100210|pir||S25299 extensin precursor (clone Tom L-4) - toma... 39 0.12
gi|548613|sp|P35820|PSC_DROME POSTERIOR SEX COMBS PROTEIN >gi|1... 39 0.15
gi|2114321|dbj|BAA20037| (D88733) membrane glycoprotein [Equine... 39 0.15
gi|5802483|gb|AAD51697.1|AF172332_1 (AF172332) major outer enve... 39 0.15
gi|4103470|gb|AAD01782.1| (AF023421) ClpE [Lactococcus lactis] 39 0.15
gi|3874559|emb|CAB02793.1| (Z81042) predicted using Genefinder;... 39 0.15
gi|2285875|dbj|BAA21652| (D85682) synaptojanin [Bos taurus] 39 0.15
gi|6473880|dbj|BAA87194.1| (AB027890) Hypothetical protein [Sch... 39 0.15
gi|4584086|emb|CAB40552.1| (AJ132828) p210 protein [Spermatozop... 39 0.15
gi|6466400|gb|AAF12982.1|AF022186_105 (AF022186) unknown; Clp p... 39 0.15
gi|423830|pir||A45690 transactivator EBNA-2 - Herpesvirus papio... 38 0.20
gi|3122844|sp|P70828|RUVB_BORBU HOLLIDAY JUNCTION DNA HELICASE ... 38 0.20
gi|6324372|ref|NP_014442.1|AGA1| anchorage subunit of a-aggluti... 38 0.27
gi|1706520|sp|P54258|DRPL_RAT ATROPHIN-1 (DENTATORUBRAL-PALLIDO... 38 0.27
gi|1705806|sp|P54197|CHI2_COCIM ENDOCHITINASE 2 PRECURSOR >gi|1... 38 0.27
gi|1209103 (U44091) atrophin-1 related protein [Rattus norvegicus] 38 0.27
gi|2133239|pir||JC4566 chitinase (EC 3.2.1.14) 2 - Coccidioides... 38 0.27
gi|310893 (L06323) membrane protein [Theileria parva] 38 0.27
gi|995557|emb|CAA61623| (X89453) DRPLA [Rattus norvegicus] 38 0.27
gi|2129234|pir||E64477 replication factor C homolog - Methanoco... 38 0.27
gi|5802485|gb|AAD51698.1|AF172333_1 (AF172333) major outer enve... 38 0.27
gi|1718187|sp|Q07284|VGP3_EBVA8 ENVELOPE GLYCOPROTEIN GP340 (ME... 38 0.35
gi|1170299|sp|P41809|HKR1_YEAST HANSENULA MRAKII KILLER TOXIN-R... 38 0.35
gi|2498873|sp|Q49425|RUVB_MYCGE HOLLIDAY JUNCTION DNA HELICASE ... 37 0.46
gi|2497281|sp|P72689|IF2_SYNY3 TRANSLATION INITIATION FACTOR IF... 37 0.46
gi|6677857|ref|NP_033151.1|| spinocerebellar ataxia 2 homolog >... 37 0.46
gi|2394451 (AF024496) contains similarity to Plasmodium falcipa... 37 0.46
gi|6012073|gb|AAB82017.2| (U54556) microfilarial sheath protein... 37 0.46
gi|3426118|emb|CAA06531| (AJ005425) MEF2D protein [Rattus norve... 37 0.46
gi|134124|sp|P08577|RUVB_ECOLI HOLLIDAY JUNCTION DNA HELICASE R... 37 0.60
gi|111978|pir||S24169 mucin - rat 37 0.60
gi|82547|pir||S18235 omega secalin precursor (clone pSec1B) - r... 37 0.60
gi|5104673|dbj|BAA79988.1| (AP000060) 141aa long hypothetical p... 37 0.60
gi|1707244 (U80845) weak similarity to drosophila homeotic gene... 37 0.60
gi|2769560|emb|CAA67558| (X99106) gp340 [Human herpesvirus 4] 37 0.60
gi|5917666|gb|AAD55980.1|AF159297_1 (AF159297) extensin-like pr... 37 0.60
gi|4104321 (AF034582) vesicle associated protein [Rattus norveg... 37 0.60
gi|6321759|ref|NP_011835.1|WSC4| Putative integral membrane pro... 36 0.78
gi|3413878|dbj|BAA32303| (AB007927) KIAA0458 protein [Homo sapi... 36 0.78
gi|3876365|emb|CAA93285.1| (Z69360) cDNA EST EMBL:D66541 comes ... 36 0.78
gi|628185|pir||S42447 nuclear protein EBNA2 - Epstein-Barr viru... 36 0.78
gi|6174969|sp|P96115|RUVB_TREPA HOLLIDAY JUNCTION DNA HELICASE ... 36 0.78
gi|1052834 (M93360) ORF UL119 [Macaca mulatta cytomegalovirus] 36 0.78
gi|532113 (U13646) homeotic region most like HMPB_DROME: homeot... 36 0.78
gi|4680231|gb|AAD27584.1|AF118275_1 (AF118275) atrophin-related... 36 0.78
gi|6649857|gb|AAF21601.1|AF009222_1 (AF009222) kexin-like serin... 36 0.78
gi|3876366|emb|CAA93286.1| (Z69360) cDNA EST yk253f12.3 comes f... 36 0.78
gi|3372354 (AF041104) atrophin-1 like protein [Homo sapiens] 36 0.78
gi|3411015 (AF016005) atrophin-1 related protein [Homo sapiens] 36 0.78
gi|100617|pir||S18350 seed storage protein - barley >gi|19001|e... 36 0.78
gi|119111|sp|P12978|EBN2_EBV EBNA-2 NUCLEAR PROTEIN >gi|1083964... 36 0.78
gi|3914142|sp|P93329|NO20_MEDTR EARLY NODULIN 20 PRECURSOR (N-2... 36 0.78
gi|1363259|pir||B56201 transcription factor MEF2D isoform 1b - ... 36 0.78
gi|628112|pir||S32988 hypothetical protein - human herpesvirus 4 36 0.78
gi|6224911|gb|AAF06008.1|AF193023_2 (AF193023) LpsB [Sinorhizob... 36 1.0
gi|4803957|gb|AAD29829.1|AC006202_7 (AC006202) putative proline... 36 1.0
gi|1076501|pir||S52985 cell wall protein - alfalfa >gi|3818416 ... 36 1.0
gi|1777932 (U55214) RuvB' [Treponema pallidum] 36 1.0
gi|1362802|pir||S56015 gastric mucin - human (fragment) >gi|547... 36 1.0
gi|2498877|sp|Q57396|RUVB_SYNY3 HOLLIDAY JUNCTION DNA HELICASE ... 36 1.0
gi|6681229|ref|NP_031907.1|| dentatorubral pallidoluysian atrop... 36 1.0
gi|2289904 (AC002397) DRPLA [Mus musculus] 36 1.0
gi|6686017|sp|O62732|SYN1_CANFA SYNAPSIN I >gi|2944066 (AF04958... 36 1.0
gi|4240124|dbj|BAA74842.1| (AB020626) KIAA0819 protein [Homo sa... 36 1.0
gi|565628|emb|CAA57791| (X82395) Msx-1 [Notophthalmus viridesce... 36 1.3
gi|1840139 (U86640) MEL-11 [Caenorhabditis elegans] >gi|4008340... 36 1.3
gi|82548|pir||S18236 omega secalin precursor (clone pSec2B) - r... 36 1.3
gi|1076802|pir||S49915 extensin-like protein - maize >gi|600118... 36 1.3
gi|1491621|emb|CAB01605| (Z78205) UL36 [Bovine herpesvirus 1] >... 36 1.3
gi|4206763|gb|AAD11796.1| (AF104328) cell wall-plasma membrane ... 36 1.3
gi|4559296|gb|AAD22972.1|AF125671_1 (AF125671) silencing mediat... 35 1.8
gi|6119851|gb|AAF04257.1| (AF139114) subtilisin-like serine pro... 35 1.8
gi|2498876|sp|Q51426|RUVB_PSEAE HOLLIDAY JUNCTION DNA HELICASE ... 35 1.8
gi|2114323|dbj|BAA20038| (D88734) membrane glycoprotein [Equine... 35 1.8
gi|2137282|pir||I52257 episialin - mouse >gi|199837 (M77226) ep... 35 2.3
gi|2267235 (U69874) delayed anaerobic 1 [Saccharomyces cerevisiae] 35 2.3
gi|6458143|gb|AAF10038.1|AE001904_14 (AE001904) hypothetical pr... 35 2.3
gi|1220511 (L76606) blackjack [Schistocerca americana] 35 2.3
gi|6434564|emb|CAB60901.1| (AL132895) predicted using Genefinde... 35 2.3
gi|2078483 (U43200) antifreeze glycopeptide AFGP polyprotein pr... 35 2.3
gi|138239|sp|P07645|VGLD_PRVRI GLYCOPROTEIN GP50 >gi|73739|pir|... 34 3.0
gi|3599946 (AF017780) RNA-dependent RNA polymerase [sour cherry... 34 3.0
gi|2145025 (AF000227) omega secalin [Secale cereale] 34 3.0
gi|2633741|emb|CAB13243| (Z99111) ATP-dependent Clp protease-li... 34 3.0
gi|442524|bbs|139926 (S66938) C-hordein [Hordeum vulgare=barley... 34 3.0
gi|4539386|emb|CAB37452.1| (AL035526) extensin-like protein [Ar... 34 3.0
gi|94221|pir||A41358 gag polyprotein - human T-cell lymphotropi... 34 3.0
gi|119711|sp|P06599|EXTN_DAUCA EXTENSIN PRECURSOR >gi|82047|pir... 34 3.0
gi|3452555|dbj|BAA32474| (AB004056) BarH-class homeodomain tran... 34 3.0
gi|2621336 (AE000814) ATP-dependent Clp protease regulatory sub... 34 3.9
gi|6561998|emb|CAB62487.1| (AL133363) proline-rich protein [Ara... 34 3.9
gi|2764670|emb|CAA04971| (AJ001743) pbp2 [Streptomyces clavulig... 34 3.9
gi|2135095|pir||S65358 familial Alzheimer's disease protein 1 -... 34 3.9
gi|3800874 (AF092447) glycoprotein gp50 [Pseudorabies virus] 34 3.9
gi|1486263|dbj|BAA13175| (D86853) extensin [Catharanthus roseus] 34 3.9
gi|3845304 (AE001423) replication factor C, 140 kDa subunit (AT... 34 3.9
gi|6680506|ref|NP_032438.1|| involucrin >gi|1352470|sp|P48997|I... 34 3.9
gi|1582765|prf||2119294A YFW1 gene [Saccharomyces cerevisiae] 34 5.2
gi|6063557|dbj|BAA85417.1| (AP000615) similar to dJ522J7.2 (Z98... 34 5.2
gi|786136 (L41833) polymorphic immunodominant molecule [Theiler... 34 5.2
gi|3915816|sp|Q58889|PRS2_METJA PUTATIVE 26S PROTEASE REGULATOR... 34 5.2
gi|4589490|dbj|BAA76773.1| (AB023146) KIAA0929 protein [Homo sa... 34 5.2
gi|6226116|sp|Q9ZDE5|RUVB_RICPR HOLLIDAY JUNCTION DNA HELICASE ... 34 5.2
gi|421935|pir||S33158 extensin - common tobacco >gi|296617|emb|... 34 5.2
gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory ... 34 5.2
gi|548998|sp|P36631|ST11_SCHPO TRANSCRIPTION FACTOR STE11 >gi|1... 34 5.2
gi|2980826|emb|CAA18162.1| (AL022172) transcription factor; HMG... 34 5.2
gi|5732926|gb|AAD49342.1|AF167710_1 (AF167710) excretory/secret... 34 5.2
gi|99861|pir||S20790 extensin - almond >gi|20420|emb|CAA46634| ... 34 5.2
gi|549002|sp|P36011|STUA_EMENI CELL PATTERN FORMATION-ASSOCIATE... 34 5.2
gi|5541865|emb|CAB51072.1| (AL096858) hypothetical protein [Hom... 34 5.2
gi|5139695|dbj|BAA81686.1| (AB029147) expressed in cucumber hyp... 33 6.8
gi|1778844 (U83086) LimA [Dictyostelium discoideum] 33 6.8
gi|121091|sp|P04722|GDA2_WHEAT ALPHA/BETA-GLIADIN A-II PRECURSO... 33 6.8
gi|2443369|dbj|BAA22433| (AB005217) Nck-associated protein NAP5... 33 6.8
gi|3644042 (AF091628) ERG-associated protein ESET [Mus musculus] 33 6.8
gi|3025114|sp|P77651|YDEZ_ECOLI HYPOTHETICAL ABC TRANSPORTER PE... 33 6.8
gi|2155266 (U90557) Gag protein [Simian T-cell lymphotropic vir... 33 6.8
gi|5923931|gb|AAD56420.1|AF186605_1 (AF186605) MLL2 protein [Ho... 33 6.8
gi|100775|pir||S07923 alpha/beta-gliadin precursor - wheat >gi|... 33 6.8
gi|1742494|dbj|BAA15203| (D90795) Ribose transport system perme... 33 6.8
gi|2145706|pir||S72582 B1937_C3_231 protein - Mycobacterium lep... 33 6.8
gi|1708641 (U51115) YeaC [Bacillus subtilis] >gi|2632946|emb|CA... 33 6.8
gi|6322611|ref|NP_012685.1|YJR151C| Yjr151cp >gi|1352944|sp|P47... 33 6.8
gi|5123787|emb|CAB45385.1| (AJ007041) trithorax homologue 2 [Ho... 33 6.8
gi|5453421|gb|AAD43568.1|AF159159_1 (AF159159) cyclin ania-6a [... 33 8.9
gi|3986121|dbj|BAA34925| (AB013130) synaptopodin [Rattus norveg... 33 8.9
gi|3643164 (AF086702) glycoprotein gD precursor [Pseudorabies v... 33 8.9
gi|4980639|gb|AAD35239.1|AE001700_3 (AE001700) ATP-dependent Cl... 33 8.9
gi|1086828 (U41263) similar to A. faecalis poly(3-hydroxybutyra... 33 8.9
gi|1321653|dbj|BAA06547| (D31769) amelogenin precursor [Mus mus... 33 8.9
gi|1402851 (U60562) amelogenin [Rattus norvegicus] 33 8.9
gi|2950243|emb|CAB10894| (Z98204) extensin [Hordeum vulgare] 33 8.9
>gi|1169397|sp|P43746|DP3X_HAEIN DNA POLYMERASE III SUBUNIT GAMMA/TAU
>gi|1075209|pir||F64111 replication protein (dnaX)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574159 (U32802) DNA polymerase III, subunits gamma
and tau (dnaX) [Haemophilus influenzae Rd]
Length = 688
Score = 386 bits (980), Expect = e-106
Identities = 204/389 (52%), Positives = 268/389 (68%), Gaps = 12/389 (3%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MSY VLARKWRPK FA++VGQEH++ AL+N L+ RLHHA+LF+GTRGVGKT+IAR+FAK
Sbjct: 1 MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
LNC G +A PCG C C I+ G +IDL+EIDAAS T V+D RE+++N QY P G+F
Sbjct: 61 GLNCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRF 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVYLIDEVHMLS+ +FNALLKTLEEPP +VKFLLATTDPQKLPVT+LSRCLQF+LK LDE
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDE 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
QI + +A ILT E I +D A+++L+KAA QAIA + V +M
Sbjct: 181 TQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNM 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
LG +D +L AL G+G+ L+R + +A+ + DW +L AE LH+I + QL+P
Sbjct: 241 LGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQ 300
Query: 901 VVFAGDGLNVALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLRMLAFRPVP 1080
+ + + + LA+ PE VQ +YQ+ ++GR DL AP+ R+G EM +LR LAF P
Sbjct: 301 -KSSDNNEHFSFLAKHISPENVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFHPKF 359
Query: 1081 VVA-----------PDLISA-EGHGQSVDAPLMASVGRDAH 1167
+ A P SA E G VD P+++ + A+
Sbjct: 360 LTAVPKANTTITPPPSTPSAVENTGNYVDVPVLSQSIKSAY 400
Score = 53.9 bits (127), Expect = 4e-06
Identities = 36/121 (29%), Positives = 61/121 (49%)
Frame = +1
Query: 1453 QWLALVERIELSGPSKQLAAHAAFVSHENNVLCLALDPEFEYLQSTRSVADLTQGLTRLL 1632
QW +VER L+G SK+LA + S ++ + L L E +L+ RS+ +L + L++L
Sbjct: 567 QWADIVERSGLTGFSKELALNCFLQSKTDDEINLGLHSEKSHLRQDRSIKNLAEALSKLQ 626
Query: 1633 GQAPEVKIEARNIQVETLHERTYRQKSERQQLAEEAFMSDHVVQHLIYQQAAKVVTDSIR 1812
G+ + I + V T E ++ A+ D +Q L+ + AK+ +SIR
Sbjct: 627 GKDIRLTINLDDSNVTTPIEYRRNIYQALREKAQNELQKDSKLQILLNEFDAKLDVESIR 686
Query: 1813 P 1815
P
Sbjct: 687 P 687
>gi|2494197|sp|P74876|DP3X_SALTY DNA POLYMERASE III SUBUNIT TAU
[CONTAINS: DNA POLYMERASE III SUBUNIT GAMMA] >gi|1527143
(U66040) DNA polymerase III tau subunit [Salmonella
typhimurium]
Length = 642
Score = 384 bits (975), Expect = e-105
Identities = 251/605 (41%), Positives = 350/605 (57%), Gaps = 38/605 (6%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MSY VLARKWRP+ FA++VGQEHV+ AL+N L GR+HHA+LF+GTRGVGKT+IAR+ AK
Sbjct: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
LNCE G +A PCG C C +I+ GR++DL+EIDAAS T V+D R++++N QY P+RG+F
Sbjct: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVYLIDEVHMLS+ +FNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF+LK LD
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
EQI+ Q+ IL E I + A+ LS+AA QA + G + AV M
Sbjct: 181 EQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQASSSGDGQVSTQAVSAM 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
LGT+D Q ++ A++ +G+R++ +I A +W +L + LHRI + QL P+
Sbjct: 241 LGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPA 300
Query: 901 VV---FAGDGLNVALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLRMLAFR 1071
+ A + L P +QL++Q + GR + AP R+G EM +LR LAF
Sbjct: 301 ALGSDMAAIEQRMRELCRTVPPGDLQLYHQTLLIGRKEFPWAPDRRMGVEMTLLRALAFH 360
Query: 1072 P-VPV------------VAPDLISAEGHGQSVDAPLMASVGRDAHGANGYTMSQSRSDLQ 1212
P +P+ VAP + Q AP + + ++ +R+ LQ
Sbjct: 361 PRMPLPEPETPRQSFAPVAPTAVMTPPQLQQPSAPAPQTSPAPLPASTSQVLA-ARNQLQ 419
Query: 1213 SA--LLQTSIAVPPMGGDDIRMGKSSLLRSTAV--------APHQLENVSV------W-A 1341
A + +T + P + S+L R +V AP LE V W A
Sbjct: 420 RAQGVTKTKKSEPAAASRARPVNNSALERLASVSERVQARPAPSALETAPVKKEAYRWKA 479
Query: 1342 EQSVLSSSEGAMERVPLTTEVNKVGVGSLDGKIT----DVGQWLALVERIELSGPSKQLA 1509
V+ + E L + L K+ + W A V ++ L +Q+A
Sbjct: 480 TTPVVQTKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 539
Query: 1510 AHAAFVSHENNVLCLALDPEFEYLQSTRSVADLTQGLTRLLGQAPEVKI-EARNIQVETL 1686
+ A+ N +CL L +L S+ + L Q L+ L G E+ I E N V T
Sbjct: 540 LN-AWKEQNGNAVCLHLRSTQRHLNSSGAQQKLAQALSDLTGTTVELTIVEDDNPAVRTP 598
Query: 1687 HERTYRQKSERQQLAEEAFMSDHVVQHLIYQQAAKVVTDSIRP 1815
E E+ A E+ ++D+ +Q L A++ +SIRP
Sbjct: 599 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 641
>gi|118808|sp|P06710|DP3X_ECOLI DNA POLYMERASE III SUBUNIT TAU
[CONTAINS: DNA POLYMERASE III SUBUNIT GAMMA]
>gi|67058|pir||DJEC3G DNA-directed DNA polymerase (EC
2.7.7.7) III gamma/delta chain precursor - Escherichia
coli >gi|41291|emb|CAA27827.1| (X04275) dnaZX gene
product (aa 1-643) [Escherichia coli]
>gi|43320|emb|CAA28174| (X04487) dnaZX protein (AA 1-643)
[Escherichia coli] >gi|145297 (M38777) dnaX ORF
[Escherichia coli] >gi|1773152 (U82664) dna polymerase
III subunits gamma and tau [Escherichia coli] >gi|1786676
(AE000153) DNA polymerase III, tau and gamma subunits;
DNA elongation factor III [Escherichia coli]
Length = 643
Score = 374 bits (949), Expect = e-102
Identities = 193/366 (52%), Positives = 254/366 (68%), Gaps = 4/366 (1%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MSY VLARKWRP+ FA++VGQEHV+ AL+N L GR+HHA+LF+GTRGVGKT+IAR+ AK
Sbjct: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
LNCE G +A PCG C C +I+ GR++DL+EIDAAS T V+D R++++N QY P+RG+F
Sbjct: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVYLIDEVHMLS+ +FNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF+LK LD
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
EQI+ Q+ IL E I + A+ L++AA QAIA G + AV M
Sbjct: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
LGT+D Q ++ A++ +G+R++ +I A +W +L + LHRI + QL P+
Sbjct: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300
Query: 901 VV---FAGDGLNVALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLRMLAFR 1071
+ A L + LA P +QL+YQ + GR +L AP R+G EM +LR LAF
Sbjct: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360
Query: 1072 P-VPVVAPDL 1098
P +P+ P++
Sbjct: 361 PRMPLPEPEV 370
>gi|1527142 (U66040) DNA polymerase III gamma subunit [Salmonella
typhimurium]
Length = 430
Score = 362 bits (920), Expect = 4e-99
Identities = 188/365 (51%), Positives = 249/365 (67%), Gaps = 4/365 (1%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MSY VLARKWRP+ FA++VGQEHV+ AL+N L GR+HHA+LF+GTRGVGKT+IAR+ AK
Sbjct: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
LNCE G +A PCG C C +I+ GR++DL+EIDAAS T V+D R++++N QY P+RG+F
Sbjct: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVYLIDEVHMLS+ +FNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF+LK LD
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
EQI+ Q+ IL E I + A+ LS+AA QA + G + AV M
Sbjct: 181 EQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQASSSGDGQVSTQAVSAM 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
LGT+D Q ++ A++ +G+R++ +I A +W +L + LHRI + QL P+
Sbjct: 241 LGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPA 300
Query: 901 VV---FAGDGLNVALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLRMLAFR 1071
+ A + L P +QL++Q + GR + AP R+G EM +LR LAF
Sbjct: 301 ALGSDMAAIEQRMRELCRTVPPGDLQLYHQTLLIGRKEFPWAPDRRMGVEMTLLRALAFH 360
Query: 1072 P-VPVVAPD 1095
P +P+ P+
Sbjct: 361 PRMPLPEPE 369
>gi|581255|emb|CAA28175| (X04487) alternate dnaZX protein (AA 1-620)
[Escherichia coli]
Length = 620
Score = 333 bits (846), Expect = 2e-90
Identities = 174/343 (50%), Positives = 233/343 (67%), Gaps = 4/343 (1%)
Frame = +1
Query: 70 VVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSADPCGRCTACLDID 249
++ AL+N L GR+HHA+LF+GTRGVGKT+IAR+ AK LNCE G +A PCG C C +I+
Sbjct: 1 MLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 60
Query: 250 VGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTL 429
GR++DL+EIDAAS T V+D R++++N QY P+RG+FKVYLIDEVHMLS+ +FNALLKTL
Sbjct: 61 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 120
Query: 430 EEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQITADDAAI 609
EEPP HVKFLLATTDPQKLPVT+LSRCLQF+LK LD EQI+ Q+ IL E I + A+
Sbjct: 121 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 180
Query: 610 IELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVDRTQVEVMLAALIAGDGDR 789
L++AA QAIA G + AV MLGT+D Q ++ A++ +G+R
Sbjct: 181 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 240
Query: 790 LLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPSVV---FAGDGLNVALLAEQTQPE 960
++ +I A +W +L + LHRI + QL P+ + A L + LA P
Sbjct: 241 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 300
Query: 961 VVQLWYQMAINGRHDLHLAPSPRVGFEMAVLRMLAFRP-VPVVAPDL 1098
+QL+YQ + GR +L AP R+G EM +LR LAF P +P+ P++
Sbjct: 301 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEV 347
>gi|6466222|gb|AAF12838.1|AF203881_11 (AF203881) DNA polymerase III
subunits tau and gamma [Zymomonas mobilis]
Length = 597
Score = 260 bits (658), Expect = 2e-68
Identities = 141/337 (41%), Positives = 212/337 (62%), Gaps = 9/337 (2%)
Frame = +1
Query: 70 VVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC-----EQGTSADPCGRCTA 234
+VR L NA+ RL HAFL TG RGVGKT+ AR+ AK+LNC G + DPCG C A
Sbjct: 1 MVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKALNCVGKDGHGGMTIDPCGECEA 60
Query: 235 CLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNA 414
C I GR+ID++E+DAAS+TGVDD+R+++E+ +Y +FKVY+IDEVHMLSK+AFNA
Sbjct: 61 CRAIAEGRHIDVVEMDAASHTGVDDIRDIVESVRYASVSARFKVYIIDEVHMLSKSAFNA 120
Query: 415 LLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQITA 594
LLKTLEEPP HVKFL ATT+ K+P+TVLSRC +F+L+R+ + +K++ EQ+ A
Sbjct: 121 LLKTLEEPPAHVKFLFATTEINKVPITVLSRCQRFDLRRISTATLTDYFSKVVQLEQVEA 180
Query: 595 DDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVDRTQVEVMLAALIA 774
++ A+ ++KAA QAIA++ G + VR+MLG DR ++ +L L+
Sbjct: 181 EEEALAMIAKAAEGSVRDGLSILDQAIAHSSGSILAADVREMLGLSDRGVIKSLLVDLLE 240
Query: 775 GDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVP----SVVFAGDGLNVALLA 942
G GDR+L + + + +L L + +H I ++ ++ + + +A L
Sbjct: 241 GKGDRVLDHVKAQYDLGVEPEALLHGLLQLIHAITRSKMGRPDNLTLHPTEEEIWLAELG 300
Query: 943 EQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLRMLAFRPVP 1080
++ V+ +Q+ + G ++ A P EMA+LR++ +P
Sbjct: 301 KKLSFPVLHRLWQLLLKGHSEVQNAVLPLEAAEMALLRVIHASQLP 346
>gi|1293572 (U49738) DNA polymerase III tau homolog DnaX [Caulobacter
crescentus]
Length = 608
Score = 249 bits (628), Expect = 7e-65
Identities = 142/359 (39%), Positives = 209/359 (57%), Gaps = 9/359 (2%)
Frame = +1
Query: 4 SYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKS 183
+Y VLARK+RP+ F +L+GQE +VR L+NA +GR+ HAF+ TG RGVGKTT AR+ A++
Sbjct: 55 AYTVLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARA 114
Query: 184 LNCEQGTSADPCGRCTA----CLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSR 351
LN E T P T C I GR++D+LE+DAAS T VD++RE+++ +Y P
Sbjct: 115 LNYETDTVKGPSVDLTTEGYHCRSIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVE 174
Query: 352 GKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKR 531
++KVY+IDEVHMLS AAFNALLKTLEEPPPH KF+ ATT+ +K+PVT+LSRC +F+L+R
Sbjct: 175 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQRFDLRR 234
Query: 532 LDEEQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYA--GGVLREG 705
++ + + + +I E + A+ +++AA QAI G +
Sbjct: 235 VEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTERGQTVTST 294
Query: 706 AVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQ 885
VRDMLG DR+Q + ++AG L L F D V+ + + H V
Sbjct: 295 VVRDMLGLADRSQTIALYEHVMAGKTKDALEGFRALWGFGADPAVVMLDVLDHCHASAVS 354
Query: 886 Q-LVPSVVF--AGDGLNVALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLR 1056
+ L P + +A + T + +QM + ++ AP EMA++R
Sbjct: 355 KALGPDALSMPKEQAARLAAIGAHTSAGTLSRLWQMLLKAHDEVRRAPDAMAAAEMALIR 414
Query: 1057 MLAFRPVP 1080
++ +P
Sbjct: 415 LVYAADLP 422
>gi|4155207 (AE001497) DNA POLYMERASE III SUBUNITS GAMMA AND TAU
[Helicobacter pylori J99]
Length = 582
Score = 248 bits (626), Expect = 1e-64
Identities = 129/281 (45%), Positives = 177/281 (62%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
VLA K+RPK F+ELVGQE V + LS AL++ RL +A+LF+G RG GKT+ +RIFA++L C
Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ G A PC C C +ID++E+D ASN G+DDVR +IE +Y PS G++K+++
Sbjct: 63 KTGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFI 122
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
IDEVHM + AFNALLKTLEEPP HVKFLLATTD KLP T+LSR F K++ E +
Sbjct: 123 IDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVI 182
Query: 553 RQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTV 732
+ IL EQ++ + +A+ +L+ + QAI Y + E V +MLG +
Sbjct: 183 SHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGAI 242
Query: 733 DRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEAL 855
DR+ +E +LI D RL A L + + GVLE +
Sbjct: 243 DRSVLEDFFQSLINQDEARLQERYAILENYETE--GVLEEM 281
>gi|2313841|gb|AAD07767.1| (AE000584) DNA polymerase III gamma and
tau subunits (dnaX) [Helicobacter pylori 26695]
Length = 578
Score = 248 bits (626), Expect = 1e-64
Identities = 129/281 (45%), Positives = 177/281 (62%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
VLA K+RPK F+ELVGQE V + LS AL++ RL +A+LF+G RG GKT+ +RIFA++L C
Sbjct: 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC 62
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
E+G A PC C C +ID++E+D ASN G+DDVR +IE +Y PS G++K+++
Sbjct: 63 EEGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFI 122
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
IDEVHM + AFNALLKTLEEPP HVKFLLATTD KLP T+LSR F K++ E +
Sbjct: 123 IDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVI 182
Query: 553 RQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTV 732
+ IL EQ++ + +A+ +L+ + QAI Y + E V +MLG +
Sbjct: 183 SHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGAI 242
Query: 733 DRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEAL 855
DR+ +E +LI D RL A L + + VLE +
Sbjct: 243 DRSVLEDFFQSLINQDEARLKERYAILENYETE--SVLEEM 281
>gi|98292|pir||S13786 DNA-directed DNA polymerase (EC 2.7.7.7) III
chain dnaX - Bacillus subtilis >gi|467409|dbj|BAA05255|
(D26185) DNA polymerase III subunit [Bacillus subtilis]
>gi|580914|emb|CAA34877| (X17014) dnaZX [Bacillus
subtilis] >gi|2632286|emb|CAB11795| (Z99104) DNA
polymerase III (gamma and tau subunits) [Bacillus
subtilis]
Length = 563
Score = 242 bits (610), Expect = 1e-62
Identities = 131/353 (37%), Positives = 209/353 (59%), Gaps = 4/353 (1%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MSY L R +RP+RF ++VGQEH+ + L NAL + HA+LF+G RG GKT+ A+IFAK
Sbjct: 1 MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
++NCE +PC C AC I G D++EIDAASN GVD++R++ + ++ PS +
Sbjct: 61 AVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVY+IDEVHMLS AFNALLKTLEEPP H F+LATT+P K+P+T++SRC +F+ KR+
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
+ I ++ KI+ AEQ+ ++ ++ ++ AA QAI+++G +L+ +
Sbjct: 181 QAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLI 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
G V + + + +L + L + L + D ++E + + + + P
Sbjct: 241 TGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPG 300
Query: 901 VVFAGDGLNV-ALLAEQTQPEVVQLWYQM--AINGRH-DLHLAPSPRVGFEMAVLRM 1059
+ + + V E ++ Q Y+M +N H ++ PR+ FE+AV+++
Sbjct: 301 LEGVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKI 357
>gi|118807|sp|P09122|DP3X_BACSU DNA POLYMERASE III SUBUNIT GAMMA/TAU
Length = 563
Score = 242 bits (610), Expect = 1e-62
Identities = 131/353 (37%), Positives = 209/353 (59%), Gaps = 4/353 (1%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MSY L R +RP+RF ++VGQEH+ + L NAL + HA+LF+G RG GKT+ A+IFAK
Sbjct: 1 MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
++NCE +PC C AC I G D++EIDAASN GVD++R++ + ++ PS +
Sbjct: 61 AVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVY+IDEVHMLS AFNALLKTLEEPP H F+LATT+P K+P+T++SRC +F+ KR+
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
+ I ++ KI+ AEQ+ ++ ++ ++ AA QAI+++G +L+ +
Sbjct: 181 QAIVGRMNKIVDAEQLQVEEGSLEIIASAAHGGMRDALSLLDQAISFSGDILKVEDALLI 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
G V + + + +L + L + L + D ++E + + + + P
Sbjct: 241 TGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPG 300
Query: 901 VVFAGDGLNV-ALLAEQTQPEVVQLWYQM--AINGRH-DLHLAPSPRVGFEMAVLRM 1059
+ + + V E ++ Q Y+M +N H ++ PR+ FE+AV+++
Sbjct: 301 LEGVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKI 357
>gi|580855|emb|CAA29958| (X06803) dnaZX-like ORF put. DNA polymerase
III [Bacillus subtilis]
Length = 422
Score = 242 bits (610), Expect = 1e-62
Identities = 131/353 (37%), Positives = 209/353 (59%), Gaps = 4/353 (1%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MSY L R +RP+RF ++VGQEH+ + L NAL + HA+LF+G RG GKT+ A+IFAK
Sbjct: 1 MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
++NCE +PC C AC I G D++EIDAASN GVD++R++ + ++ PS +
Sbjct: 61 AVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVY+IDEVHMLS AFNALLKTLEEPP H F+LATT+P K+P+T++SRC +F+ KR+
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
+ I ++ KI+ AEQ+ ++ ++ ++ AA QAI+++G +L+ +
Sbjct: 181 QAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLI 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
G V + + + +L + L + L + D ++E + + + + P
Sbjct: 241 TGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPG 300
Query: 901 VVFAGDGLNV-ALLAEQTQPEVVQLWYQM--AINGRH-DLHLAPSPRVGFEMAVLRM 1059
+ + + V E ++ Q Y+M +N H ++ PR+ FE+AV+++
Sbjct: 301 LEGVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKI 357
>gi|2984127 (AE000759) DNA polymerase III gamma subunit [Aquifex
aeolicus]
Length = 473
Score = 241 bits (609), Expect = 1e-62
Identities = 121/273 (44%), Positives = 172/273 (62%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
M+Y+ ARK+RPK F E++GQE VR L NA+++ R+ HA+LF G RGVGKTTIARI AK
Sbjct: 1 MNYVPFARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
+LNC+ + +PCG C C +ID G + DL+E+DAASN G+DDVR + E Y P +GK+
Sbjct: 61 ALNCKNPSKGEPCGECENCREIDRGVFPDLIEMDAASNRGIDDVRALKEAVNYKPIKGKY 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KVY+IDE HML+K AFNALLKTLEEPPP F+L TT+ K+ T+LSRC + ++ +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRIIFSKVRK 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
E++ + KI E I ++ A+ L+ A+ QA Y G + + V +
Sbjct: 181 EKVIEYLKKICEKEGIECEEGALEVLAHASEGCMRDAASLLDQASVYGEGRVTKEVVENF 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAE 819
LG + + V L L+ + D ++ + L+E
Sbjct: 241 LGILSQESVRSFLKLLLNSEVDEAIKFLRELSE 273
>gi|4981209|gb|AAD35768.1|AE001741_1 (AE001741) DNA polymerase III,
gamma and tau subunit [Thermotoga maritima]
Length = 478
Score = 237 bits (598), Expect = 2e-61
Identities = 117/285 (41%), Positives = 176/285 (61%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
VL RK+RPK F+E+V Q+HV +A+ A++ + H ++F G RG GKTT+ARI AKSLNC
Sbjct: 3 VLYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNC 62
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
E +PC C AC +ID G ++D++E+DAASN G+D++R + + Y P GK+KVY+
Sbjct: 63 ENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYI 122
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
IDEVHML+K AFNALLKTLEEPP HV F+LATT+ +K+P T++SRC F + + +E I+
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIE 182
Query: 553 RQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTV 732
+++ ++ AE I D A+ ++K A Q ++ G + V LG +
Sbjct: 183 KRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGLI 242
Query: 733 DRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEAL 867
V + A+ +GD R+ V+ + D+ +++ E L
Sbjct: 243 PIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDL 287
>gi|3861390|emb|CAA15289| (AJ235273) DNA POLYMERASE III SUBUNITS GAMMA
AND TAU (dnaX) [Rickettsia prowazekii]
Length = 541
Score = 226 bits (570), Expect = 5e-58
Identities = 129/360 (35%), Positives = 220/360 (60%), Gaps = 12/360 (3%)
Frame = +1
Query: 7 YLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
Y+ ARK+RP F EL GQE +V+ LS + + RL +L TG RG+GKTT ARI AK++
Sbjct: 43 YIPFARKYRPSNFTELQGQEVLVKILSYTILNDRLVGGYLLTGIRGIGKTTSARIIAKAV 102
Query: 187 NCE----QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRG 354
NC + T+ C +CT C+ + + D++EIDAAS T +DD+R +IE+A+Y P +G
Sbjct: 103 NCSALITENTAIKTCEKCTNCVSFNNHNHPDIIEIDAASKTSIDDIRRIIESAEYKPLQG 162
Query: 355 KFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRL 534
K K+++IDEVHMLSK AFNALLKTLEEPPPHV F+ ATT+ QK+P T++SRC +++L+RL
Sbjct: 163 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKVPSTIISRCQRYDLRRL 222
Query: 535 DEEQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAI---AYAGGVLREG 705
E+I + + I E + AD A+ ++ + QA A +G ++
Sbjct: 223 SFEEIFKLLQYITKQENLIADVEALRIIAHKSEGSARDAVSILDQAASMSAKSGNIISPQ 282
Query: 706 AVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATL-AEFSPDWGGVLEALAEALHRIQV 882
+ MLG VD + + + +I+ + ++ + +I L FS + ++++A+ + +
Sbjct: 283 IINQMLGLVDTSFILEFIENIISRETEKAINLINKLYYGFSINLETFIKSVADFIAYLNK 342
Query: 883 QQLVPS----VVFAGDGLNVALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAV 1050
+++P+ + + + ++L + + P + LW Q+ G ++ ++ + + EM V
Sbjct: 343 VKILPNYSLPIYESFNYRTKSILDKISLPHLSILW-QIYNKGVTEIKISYNQLIETEMLV 401
Query: 1051 LRMLAFRPVPVV 1086
++ + +P++
Sbjct: 402 IKSIYSTSLPLL 413
>gi|3150103|emb|CAA19155.1| (AL023596) DNA polymerase III subunits
gamma and tau [Mycobacterium leprae]
Length = 611
Score = 220 bits (555), Expect = 3e-56
Identities = 131/351 (37%), Positives = 206/351 (58%), Gaps = 11/351 (3%)
Frame = +1
Query: 10 LVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLN 189
+ L RK+RP FAE+VGQEHV LS ALE+GR++HA+LF+G RG GKT+ ARI A+SLN
Sbjct: 1 MTLYRKYRPAAFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60
Query: 190 CEQGTSADPCGRCTACLDI--DVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFK 363
C QGT+A PCG C +CL + + +ID++E+DAAS+ GVDD RE+ + A Y P++ +++
Sbjct: 61 CAQGTTATPCGVCESCLSLAPNAPGHIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
V+++DE HM++ A FNALLK +EEPP H+ F+ ATT+P+K+ T+ SR + + L
Sbjct: 121 VFIVDEAHMVTTAGFNALLKIVEEPPDHLIFIFATTEPEKVLPTIRSRTHHYPFRLLSPR 180
Query: 544 QIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGG--VLREGAVRD 717
++ + +I E + DDA + +A Q +A A G V + A++
Sbjct: 181 TMRALVGRICAQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGEHVTYQRALK- 239
Query: 718 MLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVP 897
+LG D ++ + AL A D L + ++ + D L E + V Q VP
Sbjct: 240 LLGATDVGLIDDAVDALGAHDAAALFGAVESVIDAGHDPRRFATDLLERFRDLIVLQAVP 299
Query: 898 -----SVVFAGDGL--NVALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLR 1056
VV A + + + A + P + + ++ +G ++ A +PR+ E+ R
Sbjct: 300 DAAARGVVDASEDVLDRMREQAVRIGPATLTRYAEVVHSGLGEMRGATAPRLLLEVVCAR 359
Query: 1057 ML 1062
+L
Sbjct: 360 LL 361
>gi|6460225|gb|AAF11953.1|AE002071_7 (AE002071) DNA polymerase III,
tau/gamma subunit [Deinococcus radiodurans]
Length = 615
Score = 219 bits (553), Expect = 5e-56
Identities = 116/261 (44%), Positives = 162/261 (61%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSA 210
RP R+ ++VGQEHV L ALE GR+ HA+LF+G RGVGKTT AR+ A + NC G +
Sbjct: 9 RPIRWEDVVGQEHVKDVLRTALEQGRIGHAYLFSGPRGVGKTTTARLIAMTANCT-GPAP 67
Query: 211 DPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEVHM 390
PCG C +CL + G + D++EIDAASN VDDVR++ E RG K+Y++DE HM
Sbjct: 68 KPCGECESCLAVRAGSHPDVMEIDAASNNSVDDVRDLREKVGLAAMRGGKKIYILDEAHM 127
Query: 391 LSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKI 570
+S+AAFNALLKTLEEPP HV F+LATT+P+K+ T+LSRC + +RL E+I ++A +
Sbjct: 128 MSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQHYRFRRLTSEEIAGKLAGL 187
Query: 571 LTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVDRTQVE 750
+T E +AD A+ + + A + +A AG + AV + LG +V
Sbjct: 188 VTLEGASADPDALNLIGRLADGAMRDGESLLERMLA-AGTAVTRPAVEEALGLPPGERVR 246
Query: 751 VMLAALIAGDGDRLLRVIATL 813
+ +AL+ GD + A L
Sbjct: 247 GVASALLVGDAGEAISGAAQL 267
>gi|3328753|gb|AAC67929.1| (AE001306) DNA Pol III Gamma and Tau
[Chlamydia trachomatis]
Length = 466
Score = 218 bits (549), Expect = 1e-55
Identities = 102/209 (48%), Positives = 150/209 (70%), Gaps = 1/209 (0%)
Frame = +1
Query: 4 SYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKS 183
SY V +R++RP F+E++GQ+ VV L N+L R HA++F+G RG GKTT+AR+FAK+
Sbjct: 3 SYQVSSRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKA 62
Query: 184 LNCEQGTS-ADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
LNC+ T +PC +C C +I +G +D++EID AS+ G++D+R++ E ++PS+ ++
Sbjct: 63 LNCQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRY 122
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
K+Y+IDEVHML+K AFN+LLKTLEEPP HVKF LATT+ K+P T+ SRC + LKR+ E
Sbjct: 123 KIYIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQKMLLKRISE 182
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAA 630
E I ++A I E A++ ++KAA
Sbjct: 183 ETIIDKLATIAKQEGTETSREALLPIAKAA 212
>gi|4376294|gb|AAD18193| (AE001589) DNA Polymerase III Gamma and Tau
[Chlamydia pneumoniae]
Length = 442
Score = 212 bits (535), Expect = 6e-54
Identities = 109/266 (40%), Positives = 160/266 (59%), Gaps = 1/266 (0%)
Frame = +1
Query: 7 YLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
Y +RK+RP+ F E++GQ VV L NAL R HA+LF+G RG GKTT+ARI AK+L
Sbjct: 6 YQASSRKYRPQIFREILGQSSVVAVLKNALVFNRAAHAYLFSGIRGTGKTTLARILAKAL 65
Query: 187 NCEQ-GTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFK 363
NC +PC +C +C +I G +D+LEID AS+ G++D+R++ E + P + KFK
Sbjct: 66 NCVHLSEDGEPCNQCFSCKEIASGSSLDVLEIDGASHRGIEDIRQINETVLFTPVKAKFK 125
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
+Y+IDEVHML+K AFNALLKTLEEPP HVKF ATT+ K+P T+LSRC + +L+R+ E+
Sbjct: 126 IYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSRCQKMHLQRIPEK 185
Query: 544 QIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDML 723
I +++ + + I A A+ +++AA I+ L V L
Sbjct: 186 TILEKLSLMAQDDHIEASQEALAPIARAAQGSLRDAESLYDYVISLFPKSLSPDTVAQAL 245
Query: 724 GTVDRTQVEVMLAALIAGDGDRLLRVI 804
G + + + A++ D L ++
Sbjct: 246 GFASQDSLRTLDNAILQRDYATALGIV 272
>gi|5918469|emb|CAB56347.1| (AL118514) DNA polymerase III subunit
gamma [Streptomyces coelicolor A3(2)]
Length = 784
Score = 212 bits (535), Expect = 6e-54
Identities = 126/354 (35%), Positives = 199/354 (55%), Gaps = 13/354 (3%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
MS L L R++RP+ FAE++GQ HV L AL + R++HA+LF+G RG GKTT ARI A+
Sbjct: 1 MSSLALYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILAR 60
Query: 181 SLNCEQGTSADPCGRCTACLDI--DVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRG 354
LNCEQG + PCG C +C D+ + ID++EIDAAS+ GVDD R++ E A + P+
Sbjct: 61 CLNCEQGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPASS 120
Query: 355 KFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRL 534
++K+Y+IDE HM+S FNALLK +EEPP H+KF+ ATT+P+K+ T+ SR + + +
Sbjct: 121 RYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRTHHYPFRLV 180
Query: 535 DEEQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVR 714
++ +A++ E I ++ + + +A Q +A AG +G
Sbjct: 181 PPGTLRDYLAEVCGREGIAVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGA---DGVTY 237
Query: 715 DM----LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQV 882
DM LG D + ++ ++ + ++GDG V+ + E D + L E L + +
Sbjct: 238 DMTTSLLGYTDGSLLDSVVESFVSGDGSAAFGVVDHVIEGGHDPRRFVTDLLERLRDLVI 297
Query: 883 QQLVPSVVFAGDGLNVALLAEQTQPEV-------VQLWYQMAINGRHDLHLAPSPRVGFE 1041
VP G A + E+ Q + + + G ++ A SPR+ E
Sbjct: 298 LAAVPDAAEKGLIDAPADVVERMQEQARSFGAAELSRAADIVNEGLTEMRGAHSPRLQLE 357
Query: 1042 MAVLRML 1062
+ R++
Sbjct: 358 LICARVM 364
>gi|6014997|sp|O69688|DP3X_MYCTU DNA POLYMERASE III SUBUNIT GAMMA/TAU
>gi|2960145|emb|CAA18043.1| (AL022121) dnaZX
[Mycobacterium tuberculosis]
Length = 578
Score = 208 bits (524), Expect = 1e-52
Identities = 126/351 (35%), Positives = 197/351 (55%), Gaps = 10/351 (2%)
Frame = +1
Query: 10 LVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLN 189
+ L RK+RP FAE+VGQEHV LS AL++GR++HA+LF+G RG GKT+ ARI A+SLN
Sbjct: 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60
Query: 190 CEQGTSADPCGRCTACLDI--DVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFK 363
C QG +A+PCG C +C+ + + ID++E+DAAS+ GVDD RE+ + A Y P + +++
Sbjct: 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
V+++DE HM++ A FNALLK +EEPP H+ F+ ATT+P+K+ T+ SR + + L
Sbjct: 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180
Query: 544 QIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGV-LREGAVRDM 720
++ +A+I E + DDA + +A Q +A A + +
Sbjct: 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPS 900
LG D ++ + AL A D L I ++ + D L E + V Q VP
Sbjct: 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300
Query: 901 VVFAG------DGLN-VALLAEQTQPEVVQLWYQMAINGRHDLHLAPSPRVGFEMAVLRM 1059
G D L+ + A + + + ++ G ++ A +PR+ E+ R+
Sbjct: 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360
Query: 1060 L 1062
L
Sbjct: 361 L 361
>gi|3323329 (AE001268) DNA polymerase III, subunits gamma and tau
(dnaH) [Treponema pallidum]
Length = 572
Score = 204 bits (514), Expect = 2e-51
Identities = 100/271 (36%), Positives = 161/271 (58%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
M+Y V A ++RP+RF ++GQ+ VV L +LE ++ A+LF+G G GKT+ ARI AK
Sbjct: 1 MAYQVTATRYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAK 60
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKF 360
+LNC Q +++PCG C +C +I G ++++EID AS+TGV DVR++ E + P ++
Sbjct: 61 ALNCVQREASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRY 120
Query: 361 KVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 540
KV++IDEVHMLS +AFNALLKT+EEPPP+V F+ ATT+ ++P TV SRC QF+ + +D
Sbjct: 121 KVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDT 180
Query: 541 EQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDM 720
+ + +A+ QI +D + +++ + Q + G + ++
Sbjct: 181 QTLVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGPVTLENIQKK 240
Query: 721 LGTVDRTQVEVMLAALIAGDGDRLLRVIATL 813
LG + + + + D L ++ L
Sbjct: 241 LGLMTDDSLAALFSHCCRKDARAALELVDAL 271
>gi|2583049 (AF025391) DNA polymerase III holoenzyme tau subunit
[Thermus thermophilus]
Length = 529
Score = 203 bits (511), Expect = 4e-51
Identities = 120/285 (42%), Positives = 168/285 (58%), Gaps = 4/285 (1%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
L R++RP F E+VGQEHV L A+ GRL A+LF+G RGVGKTT AR+ A ++ C
Sbjct: 4 LYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAMAVGC- 62
Query: 196 QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 375
QG PCG C C + G + D++EIDAASN V+DVRE+ E P KV+++
Sbjct: 63 QGEDP-PCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPRKVFIL 121
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE HMLSK+AFNALLKTLEEPPPHV F+ ATT+P+++P T+LSR F +RL EE+I
Sbjct: 122 DEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQHFRFRRLTEEEIAF 181
Query: 556 QIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVD 735
++ +IL A A++ A++ L++ A + + G + R+ V LG
Sbjct: 182 KLRRILEAVGREAEEEALLLLARLADGALRDAESLLERFLLLEGPLTRK-EVERALGLPP 240
Query: 736 RTQVEVMLAALIAGDGDRLLRVIATL--AEFSPD--WGGVLEALAEALH 870
R + + A+L G L + L ++P G+LE E L+
Sbjct: 241 REALAEIAASLARGKTAEALGLARRLYGEGYAPRSLVSGLLEVFREGLY 289
>gi|2688379 (AE001151) DNA polymerase III, subunits gamma and tau
(dnaX) [Borrelia burgdorferi]
Length = 560
Score = 201 bits (506), Expect = 1e-50
Identities = 137/520 (26%), Positives = 268/520 (51%), Gaps = 17/520 (3%)
Frame = +1
Query: 19 ARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQ 198
A K RP+ F L GQ+ VV L +++E ++ +A++F+G RGVGKT+ AR FA+ LNC
Sbjct: 8 ALKKRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCRN 67
Query: 199 GTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLID 378
G + PCG C+ C I+ +D++EID ASNT V D+R++ E + P+ K+++Y+ID
Sbjct: 68 GPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRIYIID 127
Query: 379 EVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQ 558
EVHMLS +AFNALLKT+EEPP ++ F+ ATT+ KLP T+ SRC F+ K L ++I
Sbjct: 128 EVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLDKIYNM 187
Query: 559 IAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVDR 738
+ K+ + I +D A+ ++ + Q +++ ++ +R +G +
Sbjct: 188 LKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKMGLTND 247
Query: 739 TQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPSVVFAGD 918
+E + +++ D L+ V+ ++ L ++ + + +F
Sbjct: 248 EFLEKLSVSILGEDVKELICVLDSI---------FLSGVSYEQFLLDSIEFFREALFLKI 298
Query: 919 GLN----VALLAEQTQPEVVQLWYQ-------MAINGRHDLHLAPSPRVGFE---MAVLR 1056
G+ + + +E + ++++ + + DL + +PR E + +LR
Sbjct: 299 GIKNFEFIGIKSEDLRKKLIEFDLNYLERIIVVLLETYRDLQFSVNPRYELEINFIKILR 358
Query: 1057 MLAFRPVPVVAPDLISAEGHGQSVDAPLMASVGRDAHGANGYTMSQSRSDLQSALLQTSI 1236
+ ++ P V+ + Q+++ L+ ++ D++ + + ++S DL ++S+
Sbjct: 359 LKSYVPNHVLIKQI-------QNLEDNLLENIATDSNNFDVLSNNKSEDDLAFIPSKSSL 411
Query: 1237 --AVPPMGGDDIRMGKSSLLRSTAVAPHQLENVSVWAEQSVLSSSEGAMERVPLTTEVNK 1410
P + SL + A + EN+S ++++L ++ E+++
Sbjct: 412 KCEFPEI---------KSLEKEEA---DRDENLSTKIDKNILETNS--------IDEIDE 451
Query: 1411 VGVGSLDGKITDVGQWLALVER-IELSGPSKQLAAHAAFVSHENNVLCLALDPEFEY 1578
+ + D ++ ++ + ++ I + Q H+ V+ ++NVL + EFEY
Sbjct: 452 IFIE--DDNASNSNDFIDIRDKFIYIVSRYVQTLVHSGEVAIDDNVLYYKVFSEFEY 506
>gi|2494198|sp|P75177|DP3X_MYCPN DNA POLYMERASE III SUBUNIT
GAMMA/TAU >gi|2146109|pir||S73550 DNA polymerase III
gamma-tau chain dnaX - Mycoplasma pneumoniae (SGC3)
(ATCC 29342) >gi|1673890 (AE000022) Mycoplasma
pneumoniae, DNA polymerase III subunit gamma and tau;
similar to Swiss-Prot Accession Number P06710, from E.
coli [Mycoplasma pneumoniae]
Length = 681
Score = 186 bits (468), Expect = 4e-46
Identities = 95/256 (37%), Positives = 153/256 (59%), Gaps = 1/256 (0%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
VL +K+RP +F++ VGQ+ + R + NA+ +L H ++F G RG GKTT A+I AK++NC
Sbjct: 4 VLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINC 63
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ D C +C AC I+ ID+ EIDAAS G++D+RE+ EN +P + K KVY+
Sbjct: 64 -LNWNGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVYI 122
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
+DE HML+ +++ LLKTLEE P +V F+ ATT+ K+P+T+LSRC F K++ + IQ
Sbjct: 123 LDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQ 182
Query: 553 RQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYA-GGVLREGAVRDMLGT 729
+++A++ E I A+++L+ A Q ++ + V
Sbjct: 183 QRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFNL 242
Query: 730 VDRTQVEVMLAALIAGD 780
+D+ Q + A+++GD
Sbjct: 243 LDKEQKFGFIEAVLSGD 259
>gi|1352305|sp|P47659|DP3X_MYCGE DNA POLYMERASE III SUBUNIT GAMMA
>gi|1361493|pir||D64246 DNA polymerase III chain (dnaH)
- Mycoplasma genitalium (SGC3) >gi|3845015 (U39724) DNA
polymerase III, subunit gamma and tau [Mycoplasma
genitalium]
Length = 260
Score = 178 bits (446), Expect = 2e-43
Identities = 90/253 (35%), Positives = 145/253 (56%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
V +K+RP F + +GQE + + L NA+ +L + ++F+G RG GKTT A+I AK++NC
Sbjct: 4 VFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAINC 63
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
D C C C I+ ID++EIDAAS G++D+RE++EN P K KVY+
Sbjct: 64 LNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKVYI 123
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
+DE HML+ ++ LLKTLEE PP+V F+ TT+ K+P+T+LSRC F K++ + I
Sbjct: 124 LDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDLIL 183
Query: 553 RQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTV 732
++ I E+I + A+I+++ L +G++RD L +
Sbjct: 184 ERLNDIAKKEKIKIEKDALIKIAD-----------------------LSQGSLRDGLSLL 220
Query: 733 DRTQVEVMLAALI 771
D+ + +++ L+
Sbjct: 221 DQLAISLIVKKLV 233
>gi|3184291|gb|AAC18938.1| (AC004136) similar to prokaryotic DNA
polymerase III gamma subunit [Arabidopsis thaliana]
Length = 1153
Score = 146 bits (366), Expect = 4e-34
Identities = 86/271 (31%), Positives = 140/271 (50%), Gaps = 2/271 (0%)
Frame = +1
Query: 19 ARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQ 198
++K+RP F EL+GQ VV++L NA++ R+ +LF G RG GKT+ ARIF+ +LNC
Sbjct: 452 SQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVA 511
Query: 199 GTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK--FKVYL 372
PCG C C D G+ D E+D A+ G D VR +++N + R +KV++
Sbjct: 512 TEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFV 571
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
IDE H+L + + LK LE P V F+ TTD + +P T+ SRC +F +L + I
Sbjct: 572 IDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIV 631
Query: 553 RQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTV 732
++ KI + E + D A+ ++ A Q ++ G + V +++G V
Sbjct: 632 VRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQ-LSLLGKRITTALVNELVGVV 690
Query: 733 DRTQVEVMLAALIAGDGDRLLRVIATLAEFSPD 831
++ +L ++ D ++ L + D
Sbjct: 691 SDEKLLELLELALSSDTAETVKRARELLDLGAD 723
>gi|1652627|dbj|BAA17547| (D90907) DNA polymerase III subunit
[Synechocystis sp.]
Length = 1116
Score = 142 bits (354), Expect = 1e-32
Identities = 71/127 (55%), Positives = 93/127 (72%), Gaps = 2/127 (1%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
M+Y L K+RP+ FA+LVGQ + LSNA+E R+ A+LFTG RG GKT+ ARI AK
Sbjct: 1 MAYEPLHHKYRPQTFADLVGQTAIAATLSNAIEQERIVPAYLFTGPRGTGKTSSARILAK 60
Query: 181 SLNCEQGT--SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRG 354
SLNC G +A PCG+C C I G +D++EIDAASNTGVD++RE+IE AQ+ P +
Sbjct: 61 SLNCIAGDRPTATPCGQCATCRAITNGSALDVIEIDAASNTGVDNIREIIERAQFAPVQC 120
Query: 355 KFKVYLIDE 381
++KVY+IDE
Sbjct: 121 RYKVYVIDE 129
Score = 92.4 bits (226), Expect = 1e-17
Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 6/263 (2%)
Frame = +1
Query: 274 EIDAASNTGVDDVREM-IENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHV 450
E+++ + V+ V ++ +E+ + G L+ HMLS AAFNALLKTLEEPP V
Sbjct: 527 EVESVTKGQVEKVYDLEVEDNHNFVANG----LLVHNCHMLSTAAFNALLKTLEEPPERV 582
Query: 451 KFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAA 630
F+LATTDPQ++ T++SRC +F+ +R+ + + + I E I D A+ +++ A
Sbjct: 583 VFVLATTDPQRVLPTIISRCQRFDYRRIPLQAMVDHLRYIAGRENINIDQPALTLVAQIA 642
Query: 631 XXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIAT 810
Q ++ ++ V D++G V + +L A+ + D + LL
Sbjct: 643 NGGLRDAESLLDQ-LSLLPDLITPDKVWDLVGAVPEQDLLALLEAIASDDAETLLATCRQ 701
Query: 811 LAEFSPDWGGVLEALAEALHRIQVQQLVPS-----VVFAGDGLNVALLAEQTQPEVVQLW 975
+ + VL+ LA + + Q P V A + A Q Q V+
Sbjct: 702 ILNRGREPLVVLQNLASFYLNLLIAQTAPQRSDLVAVTAETWQALCDTAPQWQRGVILQG 761
Query: 976 YQMAINGRHDLHLAPSPRVGFEMAVLRML 1062
Q + PR+ E+ +L +L
Sbjct: 762 QQKLKESEIQIRNTTQPRLWLEVTLLGLL 790
>gi|4220511|emb|CAA22984| (AL035356) DNA polymerase III like protein
[Arabidopsis thaliana]
Length = 815
Score = 141 bits (353), Expect = 1e-32
Identities = 75/198 (37%), Positives = 117/198 (58%), Gaps = 1/198 (0%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC- 192
L++K+RPK F ELVGQE VV+ L + + GR+ +LF G RG GKT+ ++IFA +LNC
Sbjct: 241 LSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCL 300
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
Q + PCG C+ C GR D++E D+ +R +I++A P +FKV++
Sbjct: 301 SQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFI 360
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
IDE +L + + LL +L+ H F+L T++ +KLP VLSR +++ ++ + I
Sbjct: 361 IDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADIS 420
Query: 553 RQIAKILTAEQITADDAAI 609
++AKI E I D A+
Sbjct: 421 TKLAKICIEEGIDFDQGAV 439
>gi|4539401|emb|CAB37467.1| (AL035526) putative protein [Arabidopsis
thaliana]
Length = 1057
Score = 124 bits (309), Expect = 2e-27
Identities = 67/198 (33%), Positives = 110/198 (54%), Gaps = 1/198 (0%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
L K+ PK F +L+GQ VV+ALSNA+ +L ++F G G GKT+ ARIFA++LNC
Sbjct: 433 LTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNCH 492
Query: 196 QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 375
PCG C++C+ D+G+ ++ E+ N + + ++++ M S +V++
Sbjct: 493 SMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLD-GNVMVSSQSPRVFIF 551
Query: 376 DEVHMLSKAAFNALLKTLEEPPP-HVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
D+ LS +NAL K ++ P HV F+L + LP ++SRC +F +L + I
Sbjct: 552 DDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDADIV 611
Query: 553 RQIAKILTAEQITADDAAI 609
+ I + E+I D A+
Sbjct: 612 YSLQWIASKEEIEIDKDAL 630
>gi|2105050|emb|CAB08836| (Z95436) hypothetical protein Rv3644c
[Mycobacterium tuberculosis]
Length = 401
Score = 99.5 bits (244), Expect = 8e-20
Identities = 61/156 (39%), Positives = 90/156 (57%), Gaps = 15/156 (9%)
Frame = +1
Query: 43 FAELVGQEHVVRAL------------SNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
F LVGQ+ V L +A G + HA+L TG G G++ A FA +L
Sbjct: 5 FTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAAL 64
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLE-IDAASNTGVDDVREMIENAQYMPSRGKFK 363
C G CGRC AC G + D+ I + GVD++R +++ A P+ G ++
Sbjct: 65 QCTSGGEPG-CGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQ 123
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLA--TTDPQKLPVTVLSRC 510
+ +I++ L++ A NALLK +EEPPP FLL + DP+ + VT+ SRC
Sbjct: 124 IVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRC 174
>gi|3097239|emb|CAA18816.1| (AL023093) hypothetical protein
MLCB2548.29c [Mycobacterium leprae]
Length = 405
Score = 96.0 bits (235), Expect = 9e-19
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 17/223 (7%)
Frame = +1
Query: 43 FAELVGQEHVVRALSNALESGR------------LHHAFLFTGTRGVGKTTIARIFAKSL 186
F LVGQ+ V L A ++ R + HA+L TG G G++ A FA +L
Sbjct: 5 FTRLVGQDAVEAELLAAAKAARSDLVHSRPADGTMTHAWLITGPPGSGRSVAAVCFAAAL 64
Query: 187 NCEQG--TSADPCGRCTACLDIDVGRYIDLLE-IDAASNTGVDDVREMIENAQYMPSRGK 357
C CGRC AC G + D+ I + GVD++R ++ A PS G
Sbjct: 65 QCTADFQDGGPGCGRCRACTTTMAGTHADVRRVIPDGLSIGVDEMRAIVHEASRRPSTGY 124
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLA--TTDPQKLPVTVLSRCLQFNLKR 531
+++ LI++ L++ A NALLK +EEPP FLL + P+ + VT+ SRC L
Sbjct: 125 WQIVLIEDADRLTEGAANALLKVVEEPPSSTVFLLCAPSVAPEDIAVTLRSRCRHVALVT 184
Query: 532 LDEEQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAV 711
I R + TA+ AA++ Q A G++R+ V
Sbjct: 185 PSHAAIARVLIDSDGLAADTANWAALVSGGHVGLARRLATDPEAQQRRERAFGLIRDAVV 244
>gi|1360895|pir||S58488 DNA polymerase III chain tau - Caulobacter
crescentus (fragment) >gi|732515 (U22036) Caulobacter
crescentus 4.5S RNA homolog (ffs) gene, partial
sequence, and DNA polymerase III tau subunit (dnaX)
gene, partial cds. [Caulobacter crescentus]
Length = 150
Score = 95.2 bits (233), Expect = 2e-18
Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 4/92 (4%)
Frame = +1
Query: 4 SYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKS 183
+Y VLARK+RP+ F +L+GQE +VR L+NA +GR+ HAF+ TG RGVGKTT AR+ A++
Sbjct: 55 AYTVLARKYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARA 114
Query: 184 LNCEQGTSADPCGRCTA----CLDIDVGRYIDLLEI 279
LN E T P T C I GR++D+LE+
Sbjct: 115 LNYETDTVKGPSVDLTTEGYHCRSIIEGRHMDVLEL 150
>gi|586870|sp|P37540|HOLB_BACSU DNA POLYMERASE III, DELTA' SUBUNIT
>gi|2126931|pir||S66061 DnaH homolog - Bacillus subtilis
>gi|467421|dbj|BAA05267| (D26185) similar to B. subtilis
DnaH [Bacillus subtilis] >gi|2632298|emb|CAB11807|
(Z99104) DNA polymerase III (delta' subunit) [Bacillus
subtilis]
Length = 329
Score = 92.8 bits (227), Expect = 8e-18
Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 11/188 (5%)
Frame = +1
Query: 61 QEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSADPCGRCTACL 240
Q V++ L N++E RL HA+LF G +G GK A + AKS C +G A+PC C C
Sbjct: 12 QPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLDAALLLAKSFFCLEG-GAEPCESCRNCK 70
Query: 241 DIDVGRYID--LLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNA 414
I+ G + D L++ D S ++ + E K+Y+I ++ A N+
Sbjct: 71 RIESGNHPDLHLVQPDGLSIKKA-QIQALQEEFSKTGLESHKKLYIISHADQMTANAANS 129
Query: 415 LLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLK---------RLDEEQIQRQIAK 567
LLK LEEP +L T PQ+L T++SRC + RL E+ + +A+
Sbjct: 130 LLKFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQPKAIEDRLIEQDVSPHMAR 189
Query: 568 ILTAEQITADDAAIIELSK 624
+L +T + A +ELS+
Sbjct: 190 LLA--NMTNNVAEAVELSR 206
>gi|145799 (L04577) DNA polymerase III delta prime subunit
[Escherichia coli]
Length = 334
Score = 92.8 bits (227), Expect = 8e-18
Identities = 57/163 (34%), Positives = 82/163 (49%), Gaps = 3/163 (1%)
Frame = +1
Query: 97 ESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLE 276
++GR HHA L G+G + ++ L C+Q CG C C + G + D
Sbjct: 19 QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYT 78
Query: 277 I--DAASNT-GVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPH 447
+ + NT GVD VRE+ E G KV + + +L+ AA NALLKTLEEPP
Sbjct: 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAE 138
Query: 448 VKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQ 585
F LAT +P++L T+ SRC L E+ +++ +T Q
Sbjct: 139 TWFFLATREPERLLATLRSRCRLHYLAGPPEQYAVTWLSREVTMSQ 184
>gi|2506368|sp|P28631|HOLB_ECOLI DNA POLYMERASE III, DELTA' SUBUNIT
>gi|479843|pir||S35523 DNA-directed DNA polymerase (EC
2.7.7.7) III delta' chain - Escherichia coli
>gi|3212391|pdb|1A5T| Crystal Structure Of The Delta
Prime Subunit Of The Clamp-Loader Complex Of Escherichia
Coli Dna Polymerase Iii >gi|145783 (L01483) DNA
polymerase III delta prime subunit [Escherichia coli]
>gi|1651540|dbj|BAA35906| (D90745) DNA-directed dna
polymerase (EC 2.7.7.7) III delta' chain [Escherichia
coli] >gi|1787341 (AE000210) DNA polymerase III, delta
prime subunit [Escherichia coli]
Length = 334
Score = 92.8 bits (227), Expect = 8e-18
Identities = 57/163 (34%), Positives = 82/163 (49%), Gaps = 3/163 (1%)
Frame = +1
Query: 97 ESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLE 276
++GR HHA L G+G + ++ L C+Q CG C C + G + D
Sbjct: 19 QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYT 78
Query: 277 I--DAASNT-GVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPH 447
+ + NT GVD VRE+ E G KV + + +L+ AA NALLKTLEEPP
Sbjct: 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAE 138
Query: 448 VKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQ 585
F LAT +P++L T+ SRC L E+ +++ +T Q
Sbjct: 139 TWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQ 184
>gi|4539558|emb|CAB38477.1| (AL035636) putative DNA polymerase
[Streptomyces coelicolor]
Length = 401
Score = 89.3 bits (218), Expect = 9e-17
Identities = 80/250 (32%), Positives = 121/250 (48%), Gaps = 42/250 (16%)
Frame = +1
Query: 49 ELVGQEHVVRALSNAL-----------------ESGRLHHAFLFTGTRGVGKTTIARIFA 177
+LVGQE V L+ A +S + HA+LFTG G G AR FA
Sbjct: 6 DLVGQEKVCEPLAAAARDADAFVTAAATAGPLPQSTSMTHAWLFTGPPGSGVARTARAFA 65
Query: 178 KSLNCEQGTSA----DPCGRCTACLDIDVGRYIDLLEIDA-ASNTGVDDVREMIENAQYM 342
+L C A CG C C VG + D+ + A + D+R+ + +
Sbjct: 66 AALQCVSPDRALGGVPGCGFCDGCHTALVGTHADVSTVVAMGAEIRAQDMRDTVRKSFTS 125
Query: 343 PSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFN 522
P+ G++++ L++E L++ + NA+LK +EEP P +LL + + T+ SRC N
Sbjct: 126 PANGRWQIILVEEAERLNEKSANAVLKAVEEPAPRTVWLLCAPSVEDVLPTIRSRCRHLN 185
Query: 523 LKRLDEEQIQRQI-----------AKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQ 669
L+ E + + A A Q D A + KAA +
Sbjct: 186 LRTPSVEAVADMLVRREGIEPDVAAAAARATQGHIDRARRLATDKAARDRRAAVLKLPLR 245
Query: 670 AIAYAGGVLR------EGAVRD---MLGTVDRTQVEVMLAALIAGDGDRLLR 798
+ GG LR + A D + +D + E + AAL A G RL R
Sbjct: 246 -VEDVGGALRAAQELVDAAAEDAKQLAEEMDAKETEELKAALGAAQGGRLPR 296
>gi|3367626|emb|CAA07618| (AJ007712) replication factor C subunit
[Arxula adeninivorans]
Length = 338
Score = 87.8 bits (214), Expect = 3e-16
Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 5/265 (1%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP E+ G E V+ + +E G+L H LF G G GKTT A+ + +
Sbjct: 22 KYRPTTLDEVAGHEGVITTIKKFVEEGKLPH-LLFHGPPGTGKTTTIIAVARQIYGKNYR 80
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIE---NAQYMPSRGKFKVYLI 375
+ +LE++A+ G+D VR+ I+ + + + S G FK+ ++
Sbjct: 81 NM-------------------ILELNASDERGIDVVRDQIKTFASTRQIFSSG-FKLVIL 120
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ AA NAL + +E+ H +F + KL +LSRC +F L E+ I+
Sbjct: 121 DEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKH 180
Query: 556 QIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAY--AGGVLREGAVRDMLGT 729
++A ++ E + A L + A AG + E V D +G+
Sbjct: 181 RLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGS 240
Query: 730 VDRTQVEVMLAALIAGDGDRLLRVIATLAE 819
+ +L A++ G + L + + +
Sbjct: 241 PRPADIRTVLQAVLDGSWESALHTFSYIKQ 270
>gi|4506491|ref|NP_002907.1|| replication factor C (activator 1) 4
(37kD) >gi|1703052|sp|P35249|AC12_HUMAN ACTIVATOR 1 37
KD SUBUNIT (REPLICATION FACTOR C 37 KD SUBUNIT) (A1 37
KD SUBUNIT) (RF-C 37 KD SUBUNIT) (RFC37) >gi|1498256
(M87339) replication factor C, 37-kDa subunit [Homo
sapiens]
Length = 363
Score = 87.8 bits (214), Expect = 3e-16
Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 10/287 (3%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RPK E+ QE VV L +LE L + LF G G GKT+ A+ L
Sbjct: 43 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAAREL------ 95
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK--------- 357
++ R + +LE++A+ G+ VRE ++N + G
Sbjct: 96 -----------FGPELFR-LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP 143
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLD 537
FK+ ++DE ++ AA AL +T+E+ +F L ++ + SRC +F K L
Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203
Query: 538 EEQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGG-VLREGAVR 714
++ Q+++ I E + D I L K + A GG + E +
Sbjct: 204 DKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVIT 263
Query: 715 DMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQ 885
D+ G + +++ + AA +G D+L V+ L D G L LH + V+
Sbjct: 264 DIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLI----DEGHAATQLVNQLHDVVVE 316
>gi|6324039|ref|NP_014109.1|RFC3| Subunit 3 of Replication Factor C;
homologous to human RFC 36 kDa subunit; Rfc3p
>gi|585844|sp|P38629|RFC3_YEAST ACTIVATOR 1 40 KD
SUBUNIT (REPLICATION FACTOR C 40 KD SUBUNIT)
>gi|1078326|pir||A36988 replication factor C chain RFC3
- yeast (Saccharomyces cerevisiae) >gi|439118 (L18755)
replication factor C [Saccharomyces cerevisiae]
>gi|841466 (U26029) Rfc3p [Saccharomyces cerevisiae]
>gi|1050872 (U23084) replication factor C, 40 kDa
subunit [Saccharomyces cerevisiae]
>gi|1302375|emb|CAA96207| (Z71566) ORF YNL290w
[Saccharomyces cerevisiae]
Length = 340
Score = 86.2 bits (210), Expect = 8e-16
Identities = 59/199 (29%), Positives = 105/199 (52%), Gaps = 6/199 (3%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP+ E+ GQ V+ + ++ G+L H LF G G GKT+ A+ + + +
Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYS 76
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN---AQYMPSRGKFKVYLI 375
+ +LE++A+ + G+D VR I++ + + S+G FK+ ++
Sbjct: 77 NM-------------------VLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIIL 116
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ AA NAL + +E + +F + KL +LSRC +F + L +E I+R
Sbjct: 117 DEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIER 176
Query: 556 QIAKILTAEQITAD---DAAIIELS 621
+IA +L E++ + A+IELS
Sbjct: 177 RIANVLVHEKLKLSPNAEKALIELS 201
>gi|6318311|gb|AAF06832.1|AF099189_2 (AF099189) DNA polymerase III
delta prime subunit [Caulobacter crescentus]
Length = 335
Score = 85.0 bits (207), Expect = 2e-15
Identities = 62/159 (38%), Positives = 84/159 (51%), Gaps = 14/159 (8%)
Frame = +1
Query: 34 PKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSAD 213
P+ L GQ A +ALE GRLHHA+L TG GVGK T+A A+ L G D
Sbjct: 7 PRDVYGLDGQSAAEAAFIDALERGRLHHAWLLTGPEGVGKATLAYRMARRL---LGARPD 63
Query: 214 PCGRCTACLDIDV-------GRYIDLLEIDAASNTG-------VDDVREMIENAQYMPSR 351
P DV + DL+ ++ ++ G VD+ R++ E P+
Sbjct: 64 PSQGLLGAAPSDVVSRQVAARSHPDLMVLERLTDDGKARKSIPVDEARKLPEFFANSPAV 123
Query: 352 GKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRC 510
++V +ID L+ A NA+LKTLEEPP LL + P KL T+ SRC
Sbjct: 124 SPYRVAIIDAADDLNVNAANAVLKTLEEPPARGVILLISHAPGKLLPTIRSRC 176
>gi|6016239|sp|O69170|HOLB_YERPE DNA POLYMERASE III, DELTA' SUBUNIT
>gi|3176888|gb|AAC18856.1| (AF065312) putative DNA
polymerase III delta' subunit [Yersinia pestis]
Length = 189
Score = 84.7 bits (206), Expect = 2e-15
Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 3/166 (1%)
Frame = +1
Query: 28 WRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
W + +LVGQ +GR HHA L G G+ + ++ L C+Q
Sbjct: 6 WLNAPYRQLVGQH----------STGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQG 55
Query: 208 ADPCGRCTACLDIDVGRYID---LLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLID 378
CG C +C + G + D L S+ GV+ VR++I+ +G KV +
Sbjct: 56 EKSCGECHSCRLMLAGNHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQQGGAKVVWLP 115
Query: 379 EVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNL 525
+L+ AA NALLKTLEEPP FLL P L T+ SRC + L
Sbjct: 116 HAEVLTDAAANALLKTLEEPPQKTYFLLDCHQPASLLATLRSRCFYWYL 164
>gi|283966|pir||A45253 activator 1 37K chain - human
Length = 363
Score = 82.3 bits (200), Expect = 1e-14
Identities = 74/287 (25%), Positives = 124/287 (42%), Gaps = 10/287 (3%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RPK E+ QE VV L +LE L + LF G G GKT+ A+ L
Sbjct: 43 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAAREL------ 95
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK--------- 357
++ R + +LE++A+ G+ VRE ++N + G
Sbjct: 96 -----------FGPELFR-LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP 143
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLD 537
FK+ ++DE ++ AA AL +T+E+ +F L ++ + SRC +F K L
Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203
Query: 538 EEQIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGG-VLREGAVR 714
++ Q+++ I E + I L K + A GG + E +
Sbjct: 204 DKIQQQRLLDIAKKENVPISHRGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVIT 263
Query: 715 DMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQ 885
+ G + +++ + AA +G D+L V+ L D G L LH + V+
Sbjct: 264 HIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLI----DEGHAATQLVNQLHDVVVE 316
>gi|1074027|pir||D64069 DNA polymerase III delta prime subunit
(holB) homolog - Haemophilus influenzae (strain Rd KW20)
Length = 333
Score = 81.5 bits (198), Expect = 2e-14
Identities = 52/158 (32%), Positives = 78/158 (48%), Gaps = 3/158 (1%)
Frame = +1
Query: 70 VVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC-EQGTSADPCGRCTACLDI 246
+ ++ + G HHA L G+G ++ A+ + C QG PCG+C +C +
Sbjct: 17 IYHQIAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK--PCGQCHSCHLM 74
Query: 247 DVGRYIDLLEIDAAS--NTGVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALL 420
+ D E+ + + GVD VR++ E + KV + L++AA NALL
Sbjct: 75 QAHSHPDYHELSPINGKDIGVDQVRDINEMVAQHAQQNGNKVVYVQGAERLTEAAANALL 134
Query: 421 KTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
KTLEEP P+ FLL L T+ SRC +NL +EE
Sbjct: 135 KTLEEPRPNTYFLLQADSSASLLATIYSRCQVWNLSVPNEE 175
>gi|2506369|sp|P43748|HOLB_HAEIN DNA POLYMERASE III, DELTA' SUBUNIT
>gi|1573429 (U32728) DNA polymerase III, delta' subunit
(holB) [Haemophilus influenzae Rd]
Length = 327
Score = 81.5 bits (198), Expect = 2e-14
Identities = 52/158 (32%), Positives = 78/158 (48%), Gaps = 3/158 (1%)
Frame = +1
Query: 70 VVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC-EQGTSADPCGRCTACLDI 246
+ ++ + G HHA L G+G ++ A+ + C QG PCG+C +C +
Sbjct: 11 IYHQIAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVAQGDK--PCGQCHSCHLM 68
Query: 247 DVGRYIDLLEIDAAS--NTGVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALL 420
+ D E+ + + GVD VR++ E + KV + L++AA NALL
Sbjct: 69 QAHSHPDYHELSPINGKDIGVDQVRDINEMVAQHAQQNGNKVVYVQGAERLTEAAANALL 128
Query: 421 KTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
KTLEEP P+ FLL L T+ SRC +NL +EE
Sbjct: 129 KTLEEPRPNTYFLLQADSSASLLATIYSRCQVWNLSVPNEE 169
>gi|5105207|dbj|BAA80521.1| (AP000061) 346aa long hypothetical
replication factor C subunit [Aeropyrum pernix]
Length = 346
Score = 80.8 bits (196), Expect = 3e-14
Identities = 74/288 (25%), Positives = 128/288 (43%), Gaps = 5/288 (1%)
Frame = +1
Query: 10 LVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLN 189
++ K+RP+ ++V Q+HVV L ++ + H LF G G GKTT A A L
Sbjct: 28 MLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPH-LLFAGPPGTGKTTAAHALAHDLF 86
Query: 190 CEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN--AQYMPSRGKFK 363
E + +Y +LE++A+ G++ +RE ++ P FK
Sbjct: 87 GE-----------------NYRQY--MLELNASDERGINVIREKVKEFARSRTPPEIPFK 127
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
+ L+DE ++ A AL + +E +F+L P K+ + SRC F + L ++
Sbjct: 128 IVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQ 187
Query: 544 QIQRQIAKILTAEQITADDA---AIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVR 714
+ ++ I E + ++ AI E+S+ QA +Y G V + AV
Sbjct: 188 DVIERLRYIAENEGVDYEEEALDAIYEISEG----DMRKAINVLQAASYLGKVTVD-AVY 242
Query: 715 DMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHR 873
++G +V MLA + GD + L + ++G E +A +HR
Sbjct: 243 RVVGMAKPREVREMLATALKGD---FTAARSLLRKIMIEYGMSGEDVARQIHR 292
>gi|2621290 (AE000811) replication factor C, small subunit
[Methanobacterium thermoautotrophicum]
Length = 321
Score = 80.4 bits (195), Expect = 4e-14
Identities = 69/267 (25%), Positives = 119/267 (43%), Gaps = 6/267 (2%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP++ ++VGQEH++ L +E + + +FTG GVGKTT A A+ +
Sbjct: 11 KYRPQKLDDIVGQEHIIPRLKRYVEEKSMPN-LMFTGPAGVGKTTAALALAREI------ 63
Query: 205 SADPCGRCTACLDIDVGRYI--DLLEIDAASNTGVDDVREMIEN-AQYMPSRGKFKVYLI 375
+G Y + LE++A+ G+D VR I+N + P F++ +
Sbjct: 64 ---------------LGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFRIIFL 108
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DEV ++K A +AL + +E F+L+ K+ + SRC F L QI +
Sbjct: 109 DEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIK 168
Query: 556 QIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVD 735
++ I E + +A +E Q+ A G + E ++ D++
Sbjct: 169 RLEYIAEKENLEY-EAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRAR 227
Query: 736 RTQVEVMLAALIAG---DGDRLLRVIATLAEFS 825
V M+ ++ G + +LR I L S
Sbjct: 228 PKDVRKMIKTILDGKFMEARDMLREIMVLQGIS 260
>gi|2506628|sp|P45526|YCAJ_ECOLI HYPOTHETICAL 49.6 KD PROTEIN IN
LOLA-SERS INTERGENIC REGION >gi|1787119 (AE000191)
putative polynucleotide enzyme [Escherichia coli]
>gi|4062469|dbj|BAA35617| (D90726) Hypothetical protein
HI1590 [Escherichia coli] >gi|4062470|dbj|BAA35624|
(D90727) Hypothetical protein HI1590 [Escherichia coli]
Length = 447
Score = 78.4 bits (190), Expect = 2e-13
Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 5/186 (2%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRA---LSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
LA + RP+ A+ +GQ+H++ A L A+E+G LH L+ G G GKTT+A + A+
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILW-GPPGTGKTTLAEVIARYA 74
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
N + +E +A +GV ++RE IE A+ + G+ +
Sbjct: 75 NAD-------------------------VERISAVTSGVKEIREAIERARQNRNAGRRTI 109
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ--KLPVTVLSRCLQFNLKRLDE 540
+DEVH +K+ +A L +E+ + F+ ATT+ +L +LSR + LK L
Sbjct: 110 LFVDEVHRFNKSQQDAFLPHIEDGT--ITFIGATTENPSFELNSALLSRARVYLLKSLST 167
Query: 541 EQIQRQIAKIL 573
E I++ + + +
Sbjct: 168 EDIEQVLTQAM 178
>gi|1653573|dbj|BAA18486| (D90914) DNA polymerase III subunit
[Synechocystis sp.]
Length = 319
Score = 77.6 bits (188), Expect = 3e-13
Identities = 61/177 (34%), Positives = 91/177 (50%), Gaps = 23/177 (12%)
Frame = +1
Query: 40 RFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSADPC 219
RF ++GQ+ + L A+ R+ A+L G GVGK+ A+ F ++L GT +D
Sbjct: 3 RFQSILGQDQAIALLQQAIAQKRIAPAYLLVGPEGVGKSLAAKAFGETLLMGLGTKSDRQ 62
Query: 220 GRCTACLDIDVGRYIDLLEID-----------------------AASNTGVDDVREMIEN 330
R A G + DLL+I+ AA V+ VRE+
Sbjct: 63 ERFFA------GNHPDLLKIEPTFQHQGKLLTASEADQAGLKRRAAPLIRVEQVREINRF 116
Query: 331 AQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRC 510
P V LI+E +++ A NALLKTLEEP LLA + LP T++SRC
Sbjct: 117 LSRPPLEADRAVILIEEAQAMNEGAANALLKTLEEPGRATLILLAPSVDVLLP-TIVSRC 175
Query: 511 LQFNLKRLDEEQIQRQIAKI 570
+ RL E + + + ++
Sbjct: 176 QRIPFYRLGEGDMTKILQRL 195
>gi|4468733|emb|CAB38106| (AJ012839) replication factor C subunit
[Schizosaccharomyces pombe] >gi|5688939|dbj|BAA82745.1|
(AB017039) Rfc3 [Schizosaccharomyces pombe]
>gi|5688941|dbj|BAA82746.1| (AB017040) Rfc3
[Schizosaccharomyces pombe]
Length = 342
Score = 76.5 bits (185), Expect = 7e-13
Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 11/294 (3%)
Frame = +1
Query: 4 SYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKS 183
S L K+RP ++V + ++ L + S R+ H LF G G GKT+ A+
Sbjct: 21 STLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPH-MLFYGPPGTGKTSTILACARK 79
Query: 184 LNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSR---- 351
+ + L+E++A+ + G+D VRE I+N + +R
Sbjct: 80 IYGPNYRN-------------------QLMELNASDDRGIDAVREQIKN--FASTRQIFA 118
Query: 352 GKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKR 531
FK+ ++DE ++ AA NAL + +E+ +V+F + K+ + SRC +F +
Sbjct: 119 STFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQP 178
Query: 532 LDEEQIQRQIAKILTAEQITAD-DA--AIIELSKAAXXXXXXXXXXXXQAIAYAGGVLRE 702
L ++I++ + ++ +E D DA A++ LSK QA A +
Sbjct: 179 LPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKG----DMRKALNILQACHAAYDHIDV 234
Query: 703 GAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWG----GVLEALAEALH 870
A+ + +G + ++ L +++ D + T++ G +L + EAL
Sbjct: 235 SAIYNCVGHPHPSDIDYFLKSIM---NDEFVIAFNTISSIKQQKGLALQDILTCIFEALD 291
Query: 871 RIQVQ 885
++++
Sbjct: 292 ELEIK 296
>gi|6459682|gb|AAF11452.1|AE002029_1 (AE002029) conserved
hypothetical protein [Deinococcus radiodurans]
Length = 434
Score = 76.1 bits (184), Expect = 9e-13
Identities = 74/237 (31%), Positives = 114/237 (47%), Gaps = 14/237 (5%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRA---LSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
LA + RP+ AE+ GQ H++ A L+ L+SGRL L+ G GVGKTT+AR+ A
Sbjct: 10 LAERLRPRTVAEVAGQSHLLGAGKPLTRVLQSGRLGSLILW-GPPGVGKTTLARLLAG-- 66
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
+VG + L +A + GV DVR+ + A+ +RG+ V
Sbjct: 67 --------------------EVGAHFIAL---SAVSAGVKDVRDAVAEAEREQARGRRTV 103
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVK-----FLLATTDPQKLPV--TVLSRCLQFNL 525
+DE+H +KA +ALL PHV+ + ATT+ V + SR L
Sbjct: 104 LFLDEIHRFNKAQQDALL-------PHVESGLLTLIGATTENPSFEVNPALRSRARTLVL 156
Query: 526 KRLDEEQIQRQIAKILTAEQ----ITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGV 693
+ L E + + + L+ E+ + A+D+A+ L++ A A A V
Sbjct: 157 EALSPEDVLALLRRALSDERGLPGVEAEDSALELLARLAEGDARRALSTLEVAATLANPV 216
Query: 694 LREGAVRDMLG 726
E AV + G
Sbjct: 217 TEE-AVTEAFG 226
>gi|1732451|dbj|BAA11313| (D78208) hypothetical protein ORF306
[Plectonema boryanum]
Length = 306
Score = 75.7 bits (183), Expect = 1e-12
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Frame = +1
Query: 43 FAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSA---- 210
FAEL+GQ V L +A+ RL A+LF G+ G+GK+ A F ++L +
Sbjct: 4 FAELIGQSQAVELLESAIAQDRLAPAYLFVGSPGIGKSLAAECFLETLLASSRSRILNRN 63
Query: 211 DPCGRCTACLDIDVGRYIDLLEIDAAS-------NTGVDDVREMIENAQYMPSRGKFKVY 369
P A + G+ + E +AA ++ +RE+ + P
Sbjct: 64 HPDWFGVAPTYLHQGKRLSAAEAEAAGVKRKTPPMIRLEQIREVSQFLSRPPLEAVRSTV 123
Query: 370 LIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQI 549
+I++ + +AA NALLKTLEEP LLA + LP T++SRC + RLD +
Sbjct: 124 VIEQAETMPEAAANALLKTLEEPGRATIILLAPSLESVLP-TIVSRCQRIPFSRLDATSM 182
Query: 550 QRQIAK 567
++K
Sbjct: 183 AEVLSK 188
>gi|5263320|gb|AAD41422.1|AC007727_11 (AC007727) Similar to
gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities. [Arabidopsis thaliana]
Length = 319
Score = 73.7 bits (178), Expect = 4e-12
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RPK+ ++ QE VVR L+N L++ H LF G G GKTT A A L +
Sbjct: 14 KYRPKQVKDVAHQEEVVRVLTNTLQTADCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY 72
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN--AQYMPSRGK------- 357
+ +LE++A+ + G++ VR I++ A + S +
Sbjct: 73 KSR------------------VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCP 114
Query: 358 -FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRL 534
FK+ ++DE +++ A NAL +T+E +F ++ + SRC +F K L
Sbjct: 115 SFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 174
Query: 535 DEEQIQRQIAKILTAEQITADDAAIIELS 621
EE + +I I E ++ D A+ LS
Sbjct: 175 SEEVMSNRILHICNEEGLSLDGEALSTLS 203
>gi|1703054|sp|P53034|AC14_DROME ACTIVATOR 1 40 KD SUBUNIT
(REPLICATION FACTOR C 40 KD SUBUNIT) (A1 40 KD SUBUNIT)
(RF-C 40 KD SUBUNIT) (RFC40) >gi|2133712|pir||S55020
replication factor C 40K chain homolog - fruit fly
(Drosophila melanogaster) >gi|639708 (U15967) rfc40
[Drosophila melanogaster]
Length = 331
Score = 73.4 bits (177), Expect = 6e-12
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 3/195 (1%)
Frame = +1
Query: 4 SYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKS 183
S+L K+RP +F E+VG E V LS G + + G GVGKTT + A+
Sbjct: 14 SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTTIQCLARI 72
Query: 184 LNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVR---EMIENAQYMPSRG 354
L + A +LE++A++ G+D VR +M + RG
Sbjct: 73 LLGDSYKEA-------------------VLELNASNERGIDVVRNKIKMFAQQKVTLPRG 113
Query: 355 KFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRL 534
+ K+ ++DE +++ A AL +T+E +F LA +K+ + SRC +L
Sbjct: 114 RHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKL 173
Query: 535 DEEQIQRQIAKILTAEQI 588
+ Q+ ++ ++ E++
Sbjct: 174 SDAQVLAKLIEVAKWEKL 191
>gi|2648471 (AE000961) activator 1, replication factor C, 35 KD
subunit [Archaeoglobus fulgidus]
Length = 319
Score = 73.0 bits (176), Expect = 7e-12
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 4/198 (2%)
Frame = +1
Query: 4 SYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKS 183
++ + K+RP+ E+VGQ+ V++ L +E + H LF+G G GKT A A+
Sbjct: 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARD 61
Query: 184 LNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMI-ENAQYMPSRGK- 357
L E + +E++A+ G+D VR I E A+ P G
Sbjct: 62 LFGENWRD-------------------NFIEMNASDERGIDVVRHKIKEFARTAPIGGAP 102
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLD 537
FK+ +DE L+ A AL +T+E +F+L+ ++ + SRC F K +
Sbjct: 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162
Query: 538 EEQIQRQIAKILTAE--QITAD 597
+E +++++ +I E +IT D
Sbjct: 163 KEAMKKRLLEICEKEGVKITED 184
>gi|2983903 (AE000744) hypothetical protein [Aquifex aeolicus]
Length = 305
Score = 72.6 bits (175), Expect = 1e-11
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 30/149 (20%)
Frame = +1
Query: 124 LFTGTRGVGKTTIARIFAKSLNCEQGTSADPCGRCTACLDID------------------ 249
LF G G GKT A FAK + C++ CG C +C ++
Sbjct: 20 LFYGKEGSGKTKTAFEFAKGILCKENVPWG-CGSCPSCKHVNELEEAFFKGEIEDFKVYK 78
Query: 250 -----------VGRYIDLLEIDAASN-TGVDDVREMIENAQYMPSRGKFKVYLIDEVHML 393
+G + D + I + + ++ +RE+ A P+ + KV +ID+ H +
Sbjct: 79 DKDGKKHFVYLMGEHPDFVVIIPSGHYIKIEQIREVKNFAYVKPALSRRKVIIIDDAHAM 138
Query: 394 SKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKI 570
+ A NALLK LEEPP F+L T + T+LSR Q K +++ +IAK+
Sbjct: 139 TSQAANALLKVLEEPPADTTFILTTNRRSAILPTILSRTFQVEFKGFSVKEVM-EIAKV 196
>gi|2662601|gb|AAB88360.1| (AF036699) strong similarity to the
activator 1 36 to 40 KD subunits family of DNA
replication factors [Caenorhabditis elegans]
Length = 334
Score = 72.6 bits (175), Expect = 1e-11
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 3/195 (1%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RPK A++VG E++V L G + + L +G G GKTT A+ L ++
Sbjct: 15 KYRPKVLADIVGNENIVERLKVIGHEGNVPNIVL-SGPPGCGKTTSVWALARELLGDKVK 73
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN---AQYMPSRGKFKVYLI 375
A +LE++A+ G+D VR I+ + G+ K+ ++
Sbjct: 74 EA-------------------VLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIIL 114
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ A AL +T+E +F LA +K+ + SRC +L Q+
Sbjct: 115 DEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLT 174
Query: 556 QIAKILTAEQITADDAAI 609
++ ++ AE++ DD +
Sbjct: 175 RVKEVAKAEKVNYDDGGL 192
>gi|6322528|ref|NP_012602.1|RFC2| Subunit 2 of Replication Factor C;
homologous to human RFC 37 kDa subunit; Rfc2p
>gi|730502|sp|P40348|RFC2_YEAST ACTIVATOR 1 41 KD
SUBUNIT (REPLICATION FACTOR C 41 KD SUBUNIT)
>gi|626873|pir||S45531 replication factor C chain RFC2 -
yeast (Saccharomyces cerevisiae)
>gi|498463|dbj|BAA05858| (D28499) Rfc2 protein
[Saccharomyces cerevisiae] >gi|841464 (U26028) Rfc2p
[Saccharomyces cerevisiae] >gi|1015747|emb|CAA89596|
(Z49568) ORF YJR068w [Saccharomyces cerevisiae]
>gi|1019690 (L47993) ORF YJR068w [Saccharomyces
cerevisiae]
Length = 353
Score = 71.4 bits (172), Expect = 2e-11
Identities = 69/279 (24%), Positives = 118/279 (41%), Gaps = 17/279 (6%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RPK E+ Q+H V L L+S L H LF G G GKT+ K L
Sbjct: 30 KYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGP--- 85
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYM----PSRGK----- 357
D+ R +LE++A+ G+ VRE ++N + PS+
Sbjct: 86 ------------DLMKSR---ILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130
Query: 358 ---FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLK 528
+K+ ++DE ++ A +AL +T+E +F L ++ + SRC +F K
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFK 190
Query: 529 RLDEEQIQRQIAKILTAEQITADDAA---IIELSKAAXXXXXXXXXXXXQAIAYAGG--V 693
LD ++ I E + DD I+++S + Y G
Sbjct: 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKN 250
Query: 694 LREGAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAE 861
+ V ++ G V + ++ + +GD D + + + T + V+ L E
Sbjct: 251 ITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
>gi|6015708|emb|CAB57535.1| (Y18930) activator 1, replication factor
C, small subunit [Sulfolobus solfataricus]
Length = 330
Score = 70.2 bits (169), Expect = 5e-11
Identities = 73/310 (23%), Positives = 124/310 (39%), Gaps = 2/310 (0%)
Frame = +1
Query: 10 LVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLN 189
++ A K+RPK ++V Q ++ L ++ + H LF G G GKTT A L
Sbjct: 8 ILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPH-LLFAGPPGTGKTTAALALVHDLY 66
Query: 190 CEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN--AQYMPSRGKFK 363
+ T LE++A+ G+D +R ++ +P FK
Sbjct: 67 GDNYTEY-------------------FLELNASDERGIDVIRNKVKEFARTVIPGDIPFK 107
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
V L+DE ++ A AL +T+E + +F+LA K+ + SR F L +E
Sbjct: 108 VVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKE 167
Query: 544 QIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDML 723
+ ++ I E+ D A+ + A AY G + AV +L
Sbjct: 168 DVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAY--GKISVEAVFKVL 225
Query: 724 GTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALHRIQVQQLVPSV 903
G +V M+ + G + + TL +G E + + +HR ++ S
Sbjct: 226 GLAQPKEVREMINLALQGKFTQARDKLRTLL---ITYGLSGEDIVKQIHR----EITSSE 278
Query: 904 VFAGDGLNVALL 939
+ + L V LL
Sbjct: 279 IQISEELRVLLL 290
>gi|6324478|ref|NP_014547.1|RFC4| Subunit 4 of Replication Factor C;
homologous to human RFC 40 kDa subunit; Rfc4p
>gi|730503|sp|P40339|RFC4_YEAST ACTIVATOR 1 37 KD
SUBUNIT (REPLICATION FACTOR C 37 KD SUBUNIT)
>gi|626874|pir||A53845 replication factor C chain RFC4 -
yeast (Saccharomyces cerevisiae) >gi|499704 (L20502) 37
kDa subunit [Saccharomyces cerevisiae]
>gi|600464|emb|CAA58185| (X83121) orf 00923
[Saccharomyces cerevisiae] >gi|841468 (U26030) Rfc4p
[Saccharomyces cerevisiae] >gi|1419942|emb|CAA99106|
(Z74836) ORF YOL094c [Saccharomyces cerevisiae]
Length = 323
Score = 69.9 bits (168), Expect = 6e-11
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 6/188 (3%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP+ +++VG + + L + G + H + +G G+GKTT A L
Sbjct: 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHEL------ 66
Query: 205 SADPCGRCTACLDIDVGR-YID-LLEIDAASNTGVDDVREMIEN-AQ---YMPSRGKFKV 366
+GR Y D +LE++A+ + G+D VR I++ AQ ++P GK K+
Sbjct: 67 ---------------LGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPP-GKHKI 110
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQ 546
++DE ++ A AL +T+E +F A K+ + SRC +L +E
Sbjct: 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDED 170
Query: 547 IQRQIAKILTAEQI 588
+ +++ +I+ E +
Sbjct: 171 VLKRLLQIIKLEDV 184
>gi|4106657|emb|CAA22597| (AL035064) activator 1 subunit
(replication factor subunit) [Schizosaccharomyces pombe]
Length = 342
Score = 68.7 bits (165), Expect = 1e-10
Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 3/254 (1%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP ++VG E + L + G + H + +G G+GKTT A +L
Sbjct: 26 KYRPIVLDDIVGNEETIDRLKVIAKEGNMPH-LVISGMPGIGKTTSILCLAHAL------ 78
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIE---NAQYMPSRGKFKVYLI 375
+ +LE++A+ G+D VR I+ + + G+ K+ ++
Sbjct: 79 -------------LGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIIL 125
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ A AL +T+E +F LA K+ + SRC RL ++Q+ +
Sbjct: 126 DEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQ 185
Query: 556 QIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVD 735
++ I AE++ D + L A +A G V E R +
Sbjct: 186 RLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFR-VADQPS 244
Query: 736 RTQVEVMLAALIAGDGD 786
+ ML A +G+ D
Sbjct: 245 PVAIHAMLTACQSGNID 261
>gi|2398811|emb|CAB16188.1| (Z99126) hypothetical protein
[Schizosaccharomyces pombe]
Length = 497
Score = 67.1 bits (161), Expect = 4e-10
Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 27/272 (9%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRA---LSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
LA + RPK E VGQE +V + N +E R + L+ G+ G GKTT+AR+ A +
Sbjct: 86 LAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILW-GSAGTGKTTLARLIAVTT 144
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQ-YMPSRGKFK 363
R+I++ +A++T V D R++ E++Q Y+ G+
Sbjct: 145 K---------------------SRFIEI----SATSTTVADCRKIFEDSQNYLTLTGRKT 179
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ--KLPVTVLSRCLQFNLKRLD 537
+ +DEVH ++A + L +E+ V + ATT+ +L ++SRC F LK+L
Sbjct: 180 IIFLDEVHRFNRAQQDIFLPMVEK--GLVTLIGATTENPSFRLNSALISRCPVFVLKKLT 237
Query: 538 EEQIQRQI--AKILTAEQITAD----DAAIIELSKAAXXXXXXXXXXXXQAIAYAGGVLR 699
+ +++ + A +L +E++ + + +II+ A A+ + G+LR
Sbjct: 238 RDNVKKILNHACLLESERLGSSMPNVETSIIDYISA---ITDGDARMALNALEMSIGMLR 294
Query: 700 EG---------------AVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPD 831
+G A+ D +G V + ++ D D L + + E D
Sbjct: 295 QGPLSLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYYLGRMLESGED 353
>gi|6598834|gb|AAF18689.1|AC010795_4 (AC010795) putative replication
factor C [Arabidopsis thaliana]
Length = 333
Score = 66.7 bits (160), Expect = 6e-10
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 3/188 (1%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP + ++VG E V L G + + L +G G GKTT A L GT
Sbjct: 20 KYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLIL-SGPPGTGKTTSILALAHEL---LGT 75
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVR---EMIENAQYMPSRGKFKVYLI 375
+ +LE++A+ + G+D VR +M + G+ KV ++
Sbjct: 76 NYKEA----------------VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVIL 119
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ A AL +T+E +F LA K+ + SRC RL ++QI
Sbjct: 120 DEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILG 179
Query: 556 QIAKILTAEQI 588
++ ++ AE++
Sbjct: 180 RLLVVVAAEKV 190
>gi|1703053|sp|P53033|AC14_CHICK ACTIVATOR 1 40 KD SUBUNIT
(REPLICATION FACTOR C 40 KD SUBUNIT) (A1 40 KD SUBUNIT)
(RF-C 40 KD SUBUNIT) (RFC40) >gi|2134397|pir||I50704
replication factor C/activator 1 subunit - chicken
>gi|527669 (U12438) replication factor C/activator 1
subunit [Gallus gallus]
Length = 359
Score = 66.0 bits (158), Expect = 1e-09
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP + E+VG E V L + G + + + G G GKTT A++L
Sbjct: 46 KYRPLKLCEVVGNEDTVSRLEVFAKEGNVPN-IIIAGPPGTGKTTSILCLARALLGPALK 104
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVR---EMIENAQYMPSRGKFKVYLI 375
A +LE++A+++ G+D VR +M + +G+ K+ ++
Sbjct: 105 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIIL 145
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ A AL +T+E +F LA K+ + SRC +L + QI
Sbjct: 146 DEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILA 205
Query: 556 QIAKILTAEQITADD 600
++ KI+ E + D
Sbjct: 206 RLLKIVEKEDVPYTD 220
>gi|1708282|sp|P52024|HOLB_PSEAE DNA POLYMERASE III, DELTA' SUBUNIT
>gi|972778 (L42622) shows homology to delta subunit of
DNA polymerase III [Pseudomonas aeruginosa]
Length = 326
Score = 65.6 bits (157), Expect = 1e-09
Identities = 42/125 (33%), Positives = 63/125 (49%), Gaps = 3/125 (2%)
Frame = +1
Query: 142 GVGKTTIARIFAKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEID---AASNTGVDDV 312
G+GK +A +A L + +A CG C AC + G + D ++ A VD V
Sbjct: 31 GIGKRALAEHWAAQL-LTRACAAGACGECKACQLLAAGTHPDYFVLEPEEAEKPIRVDQV 89
Query: 313 REMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPV 492
R+++ G KV L++ ++ A NALLK+LEEP LL + P +L
Sbjct: 90 RDLVGFVVQTAQLGGRKVVLLEPAEAMNVNAANALLKSLEEPSGDTVLLLISHQPSRLLP 149
Query: 493 TVLSRCLQ 516
T+ SRC+Q
Sbjct: 150 TIKSRCVQ 157
>gi|2649392 (AE001022) activator 1, replication factor C, 53 KD
subunit [Archaeoglobus fulgidus]
Length = 479
Score = 65.6 bits (157), Expect = 1e-09
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 6/207 (2%)
Frame = +1
Query: 10 LVLARKWRPKRFAELVGQEHVV-RALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
++ K+RPK E+V + ++ R + A R L G GVGKT++A A ++
Sbjct: 1 MLWVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKPLLLAGPPGVGKTSLALALANTM 60
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSR-GKFK 363
E R ++ VG + A N + D +++ SR GK K
Sbjct: 61 GWEAVELNASDQRSWRVIERIVG--------EGAFNETISD------EGEFLSSRIGKLK 106
Query: 364 VYLIDEVHMLSK----AAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKR 531
+ ++DEV + K AL++ ++ P L+A DP KL + + C N KR
Sbjct: 107 LIILDEVDNIHKKEDVGGEAALIRLIKRKPAQPLILIAN-DPYKLSPELRNLCEMINFKR 165
Query: 532 LDEEQIQRQIAKILTAEQITADDAAIIELSKAA 630
L ++Q+ R + +I E I D + ++++++ A
Sbjct: 166 LTKQQVARVLERIALKEGIKVDKSVLLKIAENA 198
>gi|1175611|sp|P45262|YCAJ_HAEIN HYPOTHETICAL PROTEIN HI1590
>gi|1074851|pir||F64172 hypothetical protein HI1590 -
Haemophilus influenzae (strain Rd KW20) >gi|1574435
(U32833) conserved hypothetical protein [Haemophilus
influenzae Rd]
Length = 446
Score = 65.2 bits (156), Expect = 2e-09
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 5/180 (2%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVV---RALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
LA K RP + GQ H++ + L A+++G ++ + +F G G GKTT+A I A+ +
Sbjct: 16 LAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIY-SMIFWGPPGTGKTTLAEIIAQRI 74
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
N E +E +A +G+ ++RE I+ A+ + +
Sbjct: 75 NAE-------------------------VERISAVTSGIKEIREAIDRAKQNRLADRKTI 109
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ--KLPVTVLSRCLQFNLKRLDE 540
+DEVH +K+ +A L +E+ V F+ ATT+ +L +LSR + LK L
Sbjct: 110 LFVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATTENPSFELNNALLSRARVYVLKSLTT 167
Query: 541 EQIQR 555
+I++
Sbjct: 168 AEIEQ 172
>gi|2829884 (AC002396) Hypothetical protein [Arabidopsis thaliana]
Length = 525
Score = 65.2 bits (156), Expect = 2e-09
Identities = 59/198 (29%), Positives = 101/198 (50%), Gaps = 12/198 (6%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVV---RALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
L+ + RP+ ++VGQ+H++ L +A+ES RL + +F G G GKT+IA+ S
Sbjct: 103 LSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRL-PSIVFWGPPGTGKTSIAKSLINS- 160
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRG-KFK 363
S DP + R++ L +A +GV DVR+ +E+A+ + G K
Sbjct: 161 ------SKDP----------SLYRFVSL----SAVTSGVKDVRDAVESAKRLNLEGRKRT 200
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQK--LPVTVLSRCLQFNLKRLD 537
V +DEVH +K+ + L +E+ + F+ ATT+ L +LSRC L L
Sbjct: 201 VLFMDEVHRFNKSQQDTFLPVIED--GSILFIGATTENPSFHLITPLLSRCRVLTLNPLK 258
Query: 538 EEQIQRQIAKILTAEQ------ITADDAAI 609
++ + + + + + DD+ I
Sbjct: 259 PNHVETLLRRAVDDSERGLPNSVEVDDSVI 288
>gi|4506487|ref|NP_002905.1|| replication factor C (activator 1) 2
(40kD) >gi|2507300|sp|P35250|AC14_HUMAN ACTIVATOR 1 40
KD SUBUNIT (REPLICATION FACTOR C 40 KD SUBUNIT) (A1 40
KD SUBUNIT) (RF-C 40 KD SUBUNIT) (RFC40) >gi|1590811
(M87338) replication factor C, 40-kDa subunit [Homo
sapiens] >gi|2914760 (AF045555) replication factor C
subunit 2 [Homo sapiens]
Length = 354
Score = 63.6 bits (152), Expect = 5e-09
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 3/192 (1%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP + E+VG E V L G + + + G G GKTT A++L
Sbjct: 41 KYRPVKLNEIVGNEDTVSRLEVFAREGNVPN-IIIAGPPGTGKTTSILCLARALLGPALK 99
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVR---EMIENAQYMPSRGKFKVYLI 375
A +LE++A+++ G+D VR +M + +G+ K+ ++
Sbjct: 100 DA-------------------MLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIIL 140
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ A AL +T+E +F LA K+ + SRC +L + QI
Sbjct: 141 DEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILT 200
Query: 556 QIAKILTAEQITADD 600
++ ++ E++ D
Sbjct: 201 RLMNVIEKERVPYTD 215
>gi|539678|pir||A42700 replication factor C - human
Length = 353
Score = 63.6 bits (152), Expect = 5e-09
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP + E+VG E + L G + + + G G GKTT A++L
Sbjct: 41 KYRPVKLNEIVGNEDTMSRLEVFAREGNVPN-IIIAGPPGTGKTTSILCLARAL------ 93
Query: 205 SADPCGRCTACLDIDVGRYID-LLEIDAASNTGVDDVR---EMIENAQYMPSRGKFKVYL 372
+G D +LE++A+++ G+D VR +M + +G+ K+ +
Sbjct: 94 ---------------LGALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIII 138
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQ 552
+DE ++ A AL +T+E +F LA K+ + SRC +L + QI
Sbjct: 139 LDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQIL 198
Query: 553 RQIAKILTAEQITADD 600
++ ++ E++ D
Sbjct: 199 TRLMNVIEKERVPYTD 214
>gi|1703051|sp|P53016|AC12_CAEEL PUTATIVE ACTIVATOR 1 37 KD SUBUNIT
(REPLICATION FACTOR C 37 KD SUBUNIT) (A1 37 KD SUBUNIT)
(RF-C 37 KD SUBUNIT) (RFC37) >gi|1072162 (U40935)
similar to replication factor C 37 kda subunit (human)
and F44B9.8 [Caenorhabditis elegans]
Length = 334
Score = 63.2 bits (151), Expect = 6e-09
Identities = 56/182 (30%), Positives = 88/182 (47%), Gaps = 9/182 (4%)
Frame = +1
Query: 10 LVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLN 189
L K+RPK ++ Q+ VV L AL+ L H LF G G GKT+ A F + L
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPH-LLFYGPPGTGKTSAALAFCRQLF 73
Query: 190 CEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRG----- 354
+ +I R +DL +A+ G+ VR+ I++ S G
Sbjct: 74 PK---------------NIFHDRVLDL---NASDERGIAVVRQKIQSFS-KSSLGHSHRE 114
Query: 355 ---KFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNL 525
K K+ ++DEV +++ A A+ + +E+ +F+L +L V+SRC +F
Sbjct: 115 DVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRF 174
Query: 526 KRLDEE-QIQR 555
K L E Q+QR
Sbjct: 175 KSLPAEIQVQR 185
>gi|4972952|gb|AAD34861.1|AF139987_4 (AF139987) replication factor
C, 40kDa subunit [Mus musculus]
Length = 349
Score = 62.8 bits (150), Expect = 8e-09
Identities = 47/192 (24%), Positives = 85/192 (43%), Gaps = 3/192 (1%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP + E+VG E V L G + + + G G GKTT A++L
Sbjct: 36 KYRPLKLNEIVGNEDTVSRLEVFAREGNVPN-IIIAGPPGTGKTTSILCLARALLGPALK 94
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVR---EMIENAQYMPSRGKFKVYLI 375
A +LE++A+++ G+D VR +M + +G+ K+ ++
Sbjct: 95 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIIL 135
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE ++ A AL +T+E +F LA K+ + SRC +L + Q+
Sbjct: 136 DEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLT 195
Query: 556 QIAKILTAEQITADD 600
++ ++ E++ D
Sbjct: 196 RLMNVIEKEKVPYTD 210
>gi|2688709 (AE001176) B. burgdorferi predicted coding region BB0765
[Borrelia burgdorferi]
Length = 348
Score = 60.1 bits (143), Expect = 5e-08
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +1
Query: 355 KFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRL 534
K KV I+E+ LS N+LLK LEEPP ++ F+LA + K+P T+LSR +N +L
Sbjct: 162 KPKVIYINEIENLSFNVHNSLLKILEEPPSNIYFILAARNKNKIPKTILSRLRVYNFAKL 221
Query: 535 DEE-QIQRQIAKILTAEQITADD 600
D +IQR L + IT ++
Sbjct: 222 DRSLEIQRFKESFLINKDITIEE 244
>gi|1350581|sp|Q09843|RFC2_SCHPO PROBABLE ACTIVATOR 1 41 KD SUBUNIT
(REPLICATION FACTOR C 41 KD SUBUNIT)
>gi|2130334|pir||S62493 hypothetical protein SPAC23D3.02
- fission yeast (Schizosaccharomyces pombe)
>gi|1039340|emb|CAA91237.1| (Z64354) replication factor
C activator 1 41 kd subunit [Schizosaccharomyces pombe]
Length = 340
Score = 59.3 bits (141), Expect = 9e-08
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 8/196 (4%)
Frame = +1
Query: 28 WRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
+RPK ++ QE V+ L L S L H LF G+ G GKT+ ++ L Q
Sbjct: 25 YRPKTLDQVSSQESTVQVLKKTLLSNNLPH-MLFYGSPGTGKTSTILALSRELFGPQLMK 83
Query: 208 ADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK--------FK 363
+ +LE++A+ G+ +RE +++ K FK
Sbjct: 84 SR------------------VLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFK 125
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
+ ++DE +++ A AL +T+E +F L ++ + SRC ++ K LD E
Sbjct: 126 IIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNE 185
Query: 544 QIQRQIAKILTAEQITADDAAIIE 615
+ +++ E I AD A +E
Sbjct: 186 NMVKRL------EFIAADQAVSME 203
>gi|6460143|gb|AAF11878.1|AE002064_9 (AE002064) DNA polymerase III
subunit, putative [Deinococcus radiodurans]
Length = 321
Score = 59.3 bits (141), Expect = 9e-08
Identities = 43/149 (28%), Positives = 75/149 (49%), Gaps = 23/149 (15%)
Frame = +1
Query: 115 HAFLFTGTRGVGKTTIARIFAKSLNCE--QGTSADPCGRCTACLDIDVGRYIDLLEID-- 282
+A L +G VGK +A A NC +G + CG+C +C + G + D+L ++
Sbjct: 30 NALLLSGPARVGKLDLAYAIAAQHNCSGPRGMYGEACGQCPSCRALQAGAHPDVLRLEPR 89
Query: 283 AASNTGVDDVREMIENAQYMPSRGKFKVY-------------------LIDEVHMLSKAA 405
A ++TG + +I + SR + Y ++ L+ A
Sbjct: 90 ATTSTGKAARKRIIPIGAVLESRDTGREYETHVYEFLEVRPTFERRVVIVAGAEYLNPQA 149
Query: 406 FNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQI 561
NALLK +EEPP FL D + + T++SR + ++ + + R +
Sbjct: 150 ANALLKLVEEPPHRALFLFLAEDLRSVLPTIVSRSARLSVVPASDTAMSRAL 201
>gi|2496491|sp|Q50739|YP59_MYCTU HYPOTHETICAL 47.5 KD PROTEIN
RV2559C >gi|1460081|emb|CAB01045| (Z77250) hypothetical
protein Rv2559c [Mycobacterium tuberculosis]
Length = 452
Score = 58.6 bits (139), Expect = 2e-07
Identities = 55/186 (29%), Positives = 86/186 (45%), Gaps = 5/186 (2%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRA---LSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
LA + RP E+VGQ+H++ L +E + L+ G G GKTT+A + +++
Sbjct: 31 LAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILY-GPPGSGKTTLAALISQA- 88
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
GR + L +A + GV +VR +IEN++ G+ V
Sbjct: 89 ---------------------TGRRFEAL---SALSAGVKEVRAVIENSRKALLHGEQTV 124
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVT--VLSRCLQFNLKRLDE 540
IDEVH SK +ALL +E V + ATT+ V +LSR L L+ L
Sbjct: 125 LFIDEVHRFSKTQQDALLSAVEHRV--VLLVAATTENPSFSVVAPLLSRSLILQLRPLTA 182
Query: 541 EQIQRQIAKIL 573
E + + + +
Sbjct: 183 EDTRAVVQRAI 193
>gi|6677723|ref|NP_031396.1|| replication factor C (activator 1) 5
(36.5kD) >gi|728777|sp|P40937|AC11_HUMAN ACTIVATOR 1 36
KD SUBUNIT (REPLICATION FACTOR C 36 KD SUBUNIT) (A1 36
KD SUBUNIT) (RF-C 36 KD SUBUNIT) (RFC36) >gi|1498257
(L07540) replication factor C, 36-kDa subunit [Homo
sapiens]
Length = 340
Score = 57.8 bits (137), Expect = 3e-07
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
K+RP+ +L+ + ++ + + RL H L+ G G GKT+ AK L
Sbjct: 25 KYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKTSTILACAKQLY----- 78
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMI---ENAQYMPSRGKFKVYLI 375
D + G + LE++A+ + G+D +R I + + + +G FK+ ++
Sbjct: 79 -----------KDKEFGSMV--LELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVIL 124
Query: 376 DEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQR 555
DE +++ A NAL + +E+ + +F L K+ + SRC +F L E +
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 556 QIAKILTAEQITADD---AAIIELS 621
++ ++ E++ + A++ LS
Sbjct: 185 RLEHVVEEEKVDISEDGMKALVTLS 209
>gi|600046|emb|CAA55489| (X78898) SRC strictly conserved sequence
[Saccharomyces cerevisiae] >gi|2253183|emb|CAA96120|
(Z71493) ORF YNL218w [Saccharomyces cerevisiae]
Length = 472
Score = 57.4 bits (136), Expect = 4e-07
Identities = 51/183 (27%), Positives = 96/183 (51%), Gaps = 8/183 (4%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVR----ALSNALESGRLHHAFLFTGTRGVGKTTIAR 168
+S+L L+ K RPK + VGQ+H++ L ++ G + L+ G GVGKT++AR
Sbjct: 15 ISHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILW-GPPGVGKTSLAR 73
Query: 169 IFAKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENA--QYM 342
+ K+ T+ + +VG ++E +A+ ++R + E + +Y
Sbjct: 74 LLTKTAT-------------TSSNESNVGSRYFMIE-TSATKANTQELRGIFEKSKKEYQ 119
Query: 343 PSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ--KLPVTVLSRCLQ 516
++ + V IDE+H +K + LL +E + + ATT+ +L ++SRCL
Sbjct: 120 LTKRR-TVLFIDEIHRFNKVQQDLLLPHVEN--GDIILIGATTENPSFQLNNALISRCLI 176
Query: 517 FNLKRLDEEQI 549
F L++L+ ++
Sbjct: 177 FVLEKLNVNEL 187
>gi|6324111|ref|NP_014181.1|YNL218W| Ynl218wp
>gi|1730822|sp|P40151|YNV8_YEAST HYPOTHETICAL 66.5 KD
PROTEIN IN ALG9-RAP1 INTERGENIC REGION
>gi|2132771|pir||S63176 probable membrane protein
YNL218w - yeast (Saccharomyces cerevisiae)
>gi|1302233|emb|CAA96121| (Z71494) ORF YNL218w
[Saccharomyces cerevisiae]
Length = 587
Score = 57.4 bits (136), Expect = 4e-07
Identities = 51/183 (27%), Positives = 96/183 (51%), Gaps = 8/183 (4%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVR----ALSNALESGRLHHAFLFTGTRGVGKTTIAR 168
+S+L L+ K RPK + VGQ+H++ L ++ G + L+ G GVGKT++AR
Sbjct: 130 ISHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILW-GPPGVGKTSLAR 188
Query: 169 IFAKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENA--QYM 342
+ K+ T+ + +VG ++E +A+ ++R + E + +Y
Sbjct: 189 LLTKTAT-------------TSSNESNVGSRYFMIE-TSATKANTQELRGIFEKSKKEYQ 234
Query: 343 PSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ--KLPVTVLSRCLQ 516
++ + V IDE+H +K + LL +E + + ATT+ +L ++SRCL
Sbjct: 235 LTKRR-TVLFIDEIHRFNKVQQDLLLPHVEN--GDIILIGATTENPSFQLNNALISRCLI 291
Query: 517 FNLKRLDEEQI 549
F L++L+ ++
Sbjct: 292 FVLEKLNVNEL 302
>gi|4376545|gb|AAD18421| (AE001612) DNA Polymerase III Gamma and Tau
[Chlamydia pneumoniae]
Length = 298
Score = 57.0 bits (135), Expect = 5e-07
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +1
Query: 301 VDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ 480
+D R + + P +K+Y+I E ++ AA +A LK EEPP H +L T Q
Sbjct: 81 IDLPRGIKKQIYISPFEANYKIYIIHEADRMTLAAISAFLKVFEEPPKHAVIILTTAKVQ 140
Query: 481 KLPVTVLSRCLQFNLKR 531
+LP T++SR L ++R
Sbjct: 141 RLPKTIISRSLSIFIER 157
>gi|3328592|gb|AAC67779.1| (AE001292) DNA Pol III Gamma and Tau
[Chlamydia trachomatis]
Length = 290
Score = 55.8 bits (132), Expect = 1e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +1
Query: 343 PSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFN 522
P +K+Y+I E ++ A +A LK LE+PP + F+L + PQ+LP T+ SRC+ F
Sbjct: 91 PYESPYKIYIIYEADRITLDAISAFLKLLEDPPQYGMFILVSALPQRLPPTIRSRCVSFR 150
Query: 523 LKRLDEEQIQRQ 558
+ ++ + ++
Sbjct: 151 IPMEEKTLVSKK 162
>gi|2314168|gb|AAD08068.1| (AE000610) conserved hypothetical
helicase-like protein [Helicobacter pylori 26695]
Length = 391
Score = 55.4 bits (131), Expect = 1e-06
Identities = 60/181 (33%), Positives = 83/181 (45%), Gaps = 5/181 (2%)
Frame = +1
Query: 34 PKRFAELVGQEHVV---RALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
PK + +GQEH+V L AL+S HAF F G GVGKT++A+I A L
Sbjct: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAYMLE----- 62
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEV 384
R I L A++ ++D+R ++N Q + V IDE
Sbjct: 63 -----------------RPILLFN---ATDFKLEDLRLKLKNYQNTLLK---PVVFIDET 99
Query: 385 HMLSKAAFNALLKTLEEPPPHVKFLLATT-DPQ-KLPVTVLSRCLQFNLKRLDEEQIQRQ 558
H L+K LL +E+ H L A+T DP L + SR F L L++ + R
Sbjct: 100 HRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRL 157
Query: 559 IAKILT 576
AK LT
Sbjct: 158 CAKALT 163
>gi|3136020|emb|CAA19102.1| (AL023591) hypothetical protein
MLCB1259.27 [Mycobacterium leprae]
Length = 447
Score = 55.4 bits (131), Expect = 1e-06
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 5/184 (2%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRA---LSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
LA + RP ELVGQ H++ L +E + A L G G GKTT+A + +++
Sbjct: 27 LAVRMRPASLDELVGQGHLLAPGSPLRRLVEGSGVVSAILH-GPPGCGKTTLAALISQA- 84
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
G + L +A + GV DVR +++ A+ GK V
Sbjct: 85 ---------------------TGHRFEAL---SALSAGVKDVRAVLKIARSALLSGKRTV 120
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVT--VLSRCLQFNLKRLDE 540
IDEVH SK +ALL +E V + ATT+ V +LSR L L+ L+
Sbjct: 121 LFIDEVHRFSKTQQDALLSAVENRV--VLLVAATTENPSFSVVAPLLSRSLILQLRPLNA 178
Query: 541 EQIQRQIAK 567
+ I+ + +
Sbjct: 179 DDIRAVVQR 187
>gi|3845290 (AE001420) replication factor C, 40 kDa subunit
(replication activator) [Plasmodium falciparum]
Length = 330
Score = 55.0 bits (130), Expect = 2e-06
Identities = 50/203 (24%), Positives = 92/203 (44%), Gaps = 15/203 (7%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAK 180
M + K+RPKR ++V Q + V L + + + H +F G G GKT+ A
Sbjct: 1 MENIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPH-LIFHGPPGTGKTSAINALAH 59
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMI------------ 324
L ++ S +LE++A+ + G++ VRE I
Sbjct: 60 ELFGKENISER------------------VLELNASDDRGINVVREKIKAYTRISISKNK 101
Query: 325 ---ENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVT 495
E + +PS +K+ ++DE M+++ A +AL + +E +F+L K+
Sbjct: 102 IHSETKEVLPS---WKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDP 158
Query: 496 VLSRCLQFNLKRLDEEQIQRQIAKILTAEQITADDAAI 609
+ SRC + + + + ++ I E I D A+
Sbjct: 159 IFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDAL 196
>gi|465793|sp|P34429|AC11_CAEEL PUTATIVE ACTIVATOR 1 36 KD SUBUNIT
(REPLICATION FACTOR C 36 KD SUBUNIT) (A1 36 KD SUBUNIT)
(RF-C 36 KD SUBUNIT) (RFC36) >gi|630627|pir||S44809
F44B9.8 protein - Caenorhabditis elegans >gi|388588
(L23648) homology with A1 replicative polymerase
accessory protein; putative [Caenorhabditis elegans]
Length = 447
Score = 55.0 bits (130), Expect = 2e-06
Identities = 67/269 (24%), Positives = 122/269 (44%), Gaps = 39/269 (14%)
Frame = +1
Query: 4 SYLVLARKWRPKRFAELVGQEHVVRA---LSNALESGRLHHAFLFTGTRGVGKTTIARIF 174
S L K+RP + ELV E +V+ ++ +E+ L H LF G G GKTT
Sbjct: 27 SNLPWVEKYRPSKLDELVAHEQIVKTYILVTKFIENRTLPH-LLFYGPPGTGKTTTVLAA 85
Query: 175 AKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRG 354
A+ + ++ +LE++A+ G+D VR I N + ++G
Sbjct: 86 ARQMYSPTKMASM------------------VLELNASDERGIDVVRNTIVN--FAQTKG 125
Query: 355 -------------KFKVYLIDEVHMLSKAAFNAL--------------------LKTLEE 435
FK+ ++DE ++K A NAL + +E+
Sbjct: 126 LQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRLDKTDYEQNIIIHNVNIYFRVIEK 185
Query: 436 PPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQI--TADDA-A 606
+V+F + + + SRC +F LD++ I ++ I+ EQ+ T D A
Sbjct: 186 YTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDA 245
Query: 607 IIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGAVRDMLGTVDRTQVEVMLAALIAGDGD 786
++ +SK Q+ A + + E V +G +++ ++ L+
Sbjct: 246 LLIVSKG----DMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSK 301
Query: 787 RLLRVIAT 810
+ + I T
Sbjct: 302 KCMNTIQT 309
>gi|6539526|dbj|BAA88155.1| (AB034755) replication factor C large
subunit [Pyrococcus furiosus]
Length = 479
Score = 54.7 bits (129), Expect = 2e-06
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 6/208 (2%)
Frame = +1
Query: 1 MSYLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHH-----AFLFTGTRGVGKTTIA 165
M L K+RPK+ +E+V QE + + +ES H A L G G GKTT
Sbjct: 1 MPELPWVEKYRPKKLSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGSGKTTTV 60
Query: 166 RIFAKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMP 345
A N E ++E++A+ + + ++ A M
Sbjct: 61 YALANEYNFE------------------------VIELNASDERTYEKISRYVQAAYTMD 96
Query: 346 SRGK-FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFN 522
GK K+ +DE + + + K +++ + ++A ++P + +
Sbjct: 97 ILGKRRKIIFLDEADNIEPSGAKEIAKLIDKAKNPI--IMAANKYWEVPKEIREKAELVE 154
Query: 523 LKRLDEEQIQRQIAKILTAEQITADDAAIIELSK 624
KRL + + + +IL E IT ++E++K
Sbjct: 155 YKRLTQRDVMNALIRILKREGITVPKEILLEIAK 188
>gi|2496262|sp|P75105|Y007_MYCPN HYPOTHETICAL PROTEIN MG007 HOMOLOG
>gi|2146108|pir||S73473 DNA polymerase III delta' chain
holB - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1673807 (AE000016) Mycoplasma pneumoniae, DNA
polymerase III subunit delta'; similar to Swiss-Prot
Accession Number P28631, from E. coli [Mycoplasma
pneumoniae]
Length = 253
Score = 54.3 bits (128), Expect = 3e-06
Identities = 38/146 (26%), Positives = 63/146 (43%)
Frame = +1
Query: 115 HAFLFTGTRGVGKTTIARIFAKSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASN 294
HA L RG + + + CEQ T C C +CL+I G Y + D A+
Sbjct: 6 HALLIIQRRGSYLQPVLTEYLTRVVCEQQTG---CQTCPSCLEILHGTYNNFYSFDQANP 62
Query: 295 TGVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTD 474
+ + E + ++YLI + L+ A N+LL+ +EE P + + T +
Sbjct: 63 FKREHALHLSEVLNRQSESNQKQLYLIKNLETLTATAMNSLLRLIEEHPVNTYGVFTTKN 122
Query: 475 PQKLPVTVLSRCLQFNLKRLDEEQIQ 552
+ T+LSR + LK+ + Q
Sbjct: 123 ENMILPTILSRVQKVVLKKATQLPFQ 148
>gi|5457544|emb|CAB49035.1| (AJ248283) activator 1, replication
factor C, large s ubunit [Pyrococcus abyssi]
Length = 479
Score = 53.9 bits (127), Expect = 4e-06
Identities = 46/202 (22%), Positives = 85/202 (41%), Gaps = 7/202 (3%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLH------HAFLFTGTRGVGKTTIARIFAKSL 186
K+RP+R +E++ QE + + +E+ LH A L G G GKTT A+
Sbjct: 9 KYRPRRLSEIINQEDAISKVKAWIEAW-LHGNPPKKKALLLAGPPGSGKTTTVYALAREY 67
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK-FK 363
N E ++E++A+ D + ++ A M GK K
Sbjct: 68 NFE------------------------VIELNASDERTYDKIARYVQAAYTMDILGKRRK 103
Query: 364 VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEE 543
+ +DE + + + K ++ + ++A ++P + R KRL +
Sbjct: 104 IIFLDEADNIEPSGAPEIAKLIDRARNPI--IMAANHYWEVPKEIRDRAELVEYKRLTQR 161
Query: 544 QIQRQIAKILTAEQITADDAAIIELSKAA 630
+ + +IL E IT ++E++K A
Sbjct: 162 DVINALVRILKREGITVPKEVLVEIAKRA 190
>gi|4154931 (AE001474) putative [Helicobacter pylori J99]
Length = 391
Score = 53.5 bits (126), Expect = 5e-06
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 4/181 (2%)
Frame = +1
Query: 34 PKRFAELVGQEHVV---RALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
PK E +GQEH++ L AL+S HAF F G GVGKT++A+I A+SL
Sbjct: 9 PKSLEEFLGQEHLIGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIARSLK----- 62
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEV 384
+L + A++ ++D+R ++N Q + V IDE
Sbjct: 63 -------------------RPILSFN-ATDFKLEDLRLKLKNYQNTLLK---PVVFIDET 99
Query: 385 HMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ-KLPVTVLSRCLQFNLKRLDEEQIQRQI 561
H L+K LL +E+ + +T DP L + SR F L L + + R
Sbjct: 100 HRLNKTQQEFLLPIMEKNRALI-LGASTQDPNYSLSHAIRSRSFTFELTPLKKSDLDRLC 158
Query: 562 AKILT 576
K LT
Sbjct: 159 DKALT 163
>gi|2621289 (AE000811) replication factor C, large subunit
[Methanobacterium thermoautotrophicum]
Length = 479
Score = 53.1 bits (125), Expect = 7e-06
Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 13/200 (6%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSN---ALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
K+RP F E+VG + V+ + A ++G+ L G G GKTT+A I K +
Sbjct: 6 KYRPGSFDEVVGNQKVIAEIKEWIKAWKAGKPQKPLLLVGPPGTGKTTLAHIIGKEFS-- 63
Query: 196 QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPS--RGKFKVY 369
D LE++A+ D + A S K+
Sbjct: 64 -----------------------DTLELNASDRRSQDALMRSAGEASATRSLFNHDLKLI 100
Query: 370 LIDEVHML-------SKAAFNALLKTLEEPPPHVKFLLATTDP-QKLPVTVLSRCLQFNL 525
++DEV + A N ++K P +L DP K ++ RC NL
Sbjct: 101 ILDEVDGIHGNEDRGGVQAINRIIKESRHP-----MVLTANDPYSKRLQSIKPRCRVLNL 155
Query: 526 KRLDEEQIQRQIAKILTAEQITADDAAIIELSK 624
+++ I + +I AE I D + EL+K
Sbjct: 156 RKVHTSSIAAALRRICRAEGIECPDDVLRELAK 188
>gi|3256498|dbj|BAA29181.1| (AP000001) 855aa long hypothetical
replication factor C subunit [Pyrococcus horikoshii]
Length = 855
Score = 53.1 bits (125), Expect = 7e-06
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Frame = +1
Query: 265 DLLEIDAASNTGVDDVREMI-ENAQYMPSRG-KFKVYLIDEVHMLSKAAFNALLKTLEEP 438
+ LE++A+ G++ +RE + E A+ P G FK+ +DE L++ A AL +T+E
Sbjct: 605 NFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF 664
Query: 439 PPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAE 582
+V+F+L+ K+ + SRC F + L +E I +++ I E
Sbjct: 665 SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE 712
Score = 46.1 bits (107), Expect = 0.001
Identities = 21/43 (48%), Positives = 31/43 (71%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGK 153
K+RP+R E+VGQEH+V+ L + +++G + H LF G GVGK
Sbjct: 20 KYRPQRLDEIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGK 61
>gi|4587466|gb|AAD25733.1|AF100324_1 (AF100324) DNA polymerase III
subunit [Mycoplasma fermentans]
Length = 305
Score = 51.5 bits (121), Expect = 2e-05
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Frame = +1
Query: 64 EHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSADPCGRCTACLD 243
++V+ L N++++ +L H +L G+ L C LD
Sbjct: 4 KNVITILENSIKNNKLSHCYLLKAPSGLNIDDSILYMINKL----------CNSQLQSLD 53
Query: 244 IDVGR-YIDLLEIDAASNTGVDD--VREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNA 414
++ + + E + N D V E++ G+ K+ + V SKAA N+
Sbjct: 54 LETMLPNVQIFEDNGTENNLKKDKIVAGFEESSLSSFVEGQKKITVFKNVENASKAALNS 113
Query: 415 LLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQI 561
LLK +EEP +V F+L T + K+ T+ SR + N+ E++ ++
Sbjct: 114 LLKIIEEPSDNVVFILTTNNITKVLETIKSRSITININAPSNEELAEEL 162
>gi|4981020|gb|AAD35593.1|AE001727_5 (AE001727) conserved
hypothetical protein [Thermotoga maritima]
Length = 599
Score = 50.8 bits (119), Expect = 4e-05
Identities = 43/196 (21%), Positives = 87/196 (43%), Gaps = 5/196 (2%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVV---RALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
L+ RPK F + VGQ+H+ L L++G + + L+ G G GKT++ + +
Sbjct: 8 LSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILY-GPPGSGKTSVFSLLKRYF 66
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
N G + L +++ GV +++ +++ + + GK +
Sbjct: 67 N---------------------GEVVYL----SSTVHGVSEIKNVLKRGEQLRKYGKKLL 101
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPV--TVLSRCLQFNLKRLDE 540
+DE+H L+K L+ +E + + TT+ + +LSRC K+L +
Sbjct: 102 LFLDEIHRLNKNQQMVLVSHVER--GDIVLVATTTENPSFVIVPALLSRCRILYFKKLSD 159
Query: 541 EQIQRQIAKILTAEQITADDA 603
E + + + K I +++
Sbjct: 160 EDLMKILKKATEVLNIDLEES 180
>gi|3322812 (AE001227) DNA polymerase III, gamma and tau subunits,
putative [Treponema pallidum]
Length = 423
Score = 50.4 bits (118), Expect = 5e-05
Identities = 31/90 (34%), Positives = 47/90 (51%)
Frame = +1
Query: 301 VDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ 480
V +R I+ + PS G+ KV +I+ H + ++A A LK LEEPP F+L T
Sbjct: 182 VQQIRNAIQWVRLTPS-GRKKVLIIEHAHAMHESARTAFLKILEEPPRDTLFILTTATKY 240
Query: 481 KLPVTVLSRCLQFNLKRLDEEQIQRQIAKI 570
+ TVLSR ++ + E ++ Q A I
Sbjct: 241 AIMPTVLSRVRSYSFR---ERSVELQCAVI 267
>gi|4981299|gb|AAD35853.1|AE001746_14 (AE001746) DNA polymerase III,
gamma subunit-related protein [Thermotoga maritima]
Length = 312
Score = 50.0 bits (117), Expect = 6e-05
Identities = 29/81 (35%), Positives = 43/81 (52%), Gaps = 1/81 (1%)
Frame = +1
Query: 265 DLLEIDA-ASNTGVDDVREMIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPP 441
D+LEID N G+DD+R + + Y P K ++ + +++ A NA LK LEEPP
Sbjct: 58 DVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP 117
Query: 442 PHVKFLLATTDPQKLPVTVLSR 507
+ +L T L T+ SR
Sbjct: 118 EYAVIVLNTRRWHYLLPTIKSR 139
>gi|5420387|emb|CAB46679.1| (AJ243459) proteophosphoglycan [Leishmania
major]
Length = 873
Score = 49.6 bits (116), Expect = 8e-05
Identities = 64/286 (22%), Positives = 116/286 (40%)
Frame = -2
Query: 1481 SMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGAT 1302
S S++AS +S S P+ +S S + S APS S+ SA + + S ++
Sbjct: 625 SASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSS 684
Query: 1301 AVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISGASTL 1122
A ++ P SS P ++ S + P A +S P+ + S A
Sbjct: 685 APSASSSSAPSSSSSAPSASSSSAPSSSSS----------APSASSSSAPSSSSSSA--- 731
Query: 1121 CPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCS 942
PSA S ++ + S S++ S ++S S
Sbjct: 732 ---PSASSSSAPSSSSSSAPSASSSSAP----------------------SSSSSAPSAS 766
Query: 941 ANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAINA 762
++ A + S A + +S + A + +S++ P S +SA A S S +P+ ++
Sbjct: 767 SSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSA----SSSSAPSSSS 822
Query: 761 ANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSAA 624
++ S S S S +APS ++ A + + S+ S + PS++
Sbjct: 823 SSAPSASSSSAPSSSSSSAPSASSSSASSSSSSAPSASSSSAPSSS 868
Score = 47.6 bits (111), Expect = 3e-04
Identities = 56/264 (21%), Positives = 114/264 (42%), Gaps = 4/264 (1%)
Frame = -2
Query: 1415 PTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIGGTA 1236
P L S + + P E S+ + + + +S ++A ++ P SS P ++
Sbjct: 600 PELLASDCATENACKPETESSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSS 659
Query: 1235 IEVCSKADWRSERDWDIVYPLAPCASLPTDAISGA-STLCPCPSAEIRSGATTGTGRKAS 1059
S + P + +S P+ + S A S+ PSA S ++ + ++
Sbjct: 660 SAPSSSSSSAPSASSSSA-PSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSA 718
Query: 1058 IRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT 879
S+A S+ + + S P S ++S S++ A + S A + +S +
Sbjct: 719 SSSSAPSSSSSSAPSASSSSAP------SSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 772
Query: 878 *ILCKASARASNTPPQSGENSAKVAITR---NSRSPSPAINAANITST*VRSTVPSMSRT 708
SA +S+ P S ++ + + +S S +P+ ++++ S+ S + S +
Sbjct: 773 SSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSS 832
Query: 707 APSRNTPPA*AMAWSSKDKPSRNEPSAA 624
APS ++ A + + SS S + PSA+
Sbjct: 833 APSSSSSSAPSASSSSASSSSSSAPSAS 860
Score = 37.5 bits (85), Expect = 0.35
Identities = 61/310 (19%), Positives = 123/310 (39%)
Frame = -2
Query: 1628 NRVNPWVKSATERVDCRYSNSGSNAKHRTLFS*ETKAA*AANCLEGPLNSMRSTNASHCP 1449
N P +S++ S++ S++ S + + +++ +S S+++S P
Sbjct: 611 NACKPETESSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAP 670
Query: 1448 TSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPI 1269
++ S + +S S + S APS S ++ + SS A + ++
Sbjct: 671 SA---SSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS 727
Query: 1268 RMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISGASTLCPCPSAEIRSG 1089
S+P ++ S + AP AS + S S+ PSA S
Sbjct: 728 SSSAPSASSSSAPSSSSSS-------------APSAS----SSSAPSSSSSAPSASSSSA 770
Query: 1088 ATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPA 909
++ + ++ S+A S+ + + S P S SA A+ + +P+
Sbjct: 771 PSSSSSAPSASSSSAPSSSSSSAPSASSSSAP-----------SSSSSSAPSASSSSAPS 819
Query: 908 NTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAINAANITST*VRST 729
+++ A + +S++ P S +SA A + ++ S S + +A+ S+
Sbjct: 820 SSSS----------SAPSASSSSAPSSSSSSAPSASSSSASSSSSSAPSAS------SSS 863
Query: 728 VPSMSRTAPS 699
PS S +APS
Sbjct: 864 APSSSSSAPS 873
>gi|4455787|emb|CAB36876.1| (AL035536) putative DNA polymerase
accessory protein [Schizosaccharomyces pombe]
Length = 358
Score = 49.2 bits (115), Expect = 1e-04
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 17/195 (8%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFA--------- 177
++RPK A L + + L + + H ++ G G GK T R+ A
Sbjct: 6 QYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVY-GPSGAGKKT--RVVAILRELYGPG 62
Query: 178 -KSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDV------REMIENAQ 336
+ L +Q T P + L I++ + LEI + D V +++ ++AQ
Sbjct: 63 SEKLKIDQRTFLTPSSKK---LQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQ 119
Query: 337 Y-MPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCL 513
+ ++ FKV +I+ L++ A AL +T+E+ +++ +L K+ + SR L
Sbjct: 120 VDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTL 179
Query: 514 QFNLKRLDEEQIQRQIAKILTAEQITADDAAI 609
+ E+I ++KILTA+ + A D+ +
Sbjct: 180 MVRVAAPTPEEIILVMSKILTAQGLEAPDSLL 211
>gi|4494101|emb|CAB39134.1| (Z98978) replication factor 3 subunit
[Schizosaccharomyces pombe]
Length = 224
Score = 49.2 bits (115), Expect = 1e-04
Identities = 40/176 (22%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Frame = +1
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLD 537
FK+ ++DE ++ AA NAL + +E+ +V+F + K+ + SRC +F + L
Sbjct: 3 FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 62
Query: 538 EEQIQRQIAKILTAEQITAD-DA--AIIELSKAAXXXXXXXXXXXXQAIAYAGGVLREGA 708
++I++ + ++ +E D DA A++ LSK QA A + A
Sbjct: 63 PKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKG----DMRKALNILQACHAAYDHIDVSA 118
Query: 709 VRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWG----GVLEALAEALHRI 876
+ + +G + ++ L +++ D + T++ G +L + EAL +
Sbjct: 119 IYNCVGHPHPSDIDYFLKSIM---NDEFVIAFNTISSIKQQKGLALQDILTCIFEALDEL 175
Query: 877 QVQ 885
+++
Sbjct: 176 EIK 178
>gi|98790|pir||S11163 ATP-dependent proteinase homolog -
Mycobacterium leprae (fragment)
Length = 649
Score = 48.8 bits (114), Expect = 1e-04
Identities = 38/133 (28%), Positives = 63/133 (46%), Gaps = 13/133 (9%)
Frame = +1
Query: 37 KRFAELVGQEHVVRALSNALESGRL--------HHAFLFTGTRGVGKTTIARIFAKSLNC 192
+R ++GQE V+A+S A+ R +F+F G GVGKT +++ A L
Sbjct: 513 ERHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFL-- 570
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGK 357
G A + ID+G + D G ++ ++ E + P
Sbjct: 571 --------FGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKP---- 618
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEE 435
F V L DE+ + +N+LL+ LE+
Sbjct: 619 FSVVLFDEIEKAHQEIYNSLLQVLED 644
>gi|3982831 (AF083343) 101 kDa heat shock protein; HSP101 [Nicotiana
tabacum]
Length = 907
Score = 47.6 bits (111), Expect = 3e-04
Identities = 39/128 (30%), Positives = 62/128 (47%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRLHH--------AFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
+VGQ+H VRA++ A+ R +FLF G GVGKT +A+ A+ L +
Sbjct: 569 VVGQDHAVRAVAEAVLRSRAGPGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDD--- 625
Query: 208 ADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ ID+ Y++ + G D+ ++ E + P + V L
Sbjct: 626 -------KLMIRIDMSEYMEQHSVSRLIGAPPGYVGHDEGGQLTEAVRRRP----YSVVL 674
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
DEV A FN LL+ L++
Sbjct: 675 FDEVEKAHPAVFNTLLQVLDD 695
>gi|1708857|sp|P42425|LON2_BACSU ATP-DEPENDENT PROTEASE LA HOMOLOG
>gi|1142617 (U18229) Lon-like protease [Bacillus
subtilis] >gi|1770077|emb|CAA99539.1| (Z75208)
ATP-dependent Lon protease [Bacillus subtilis]
>gi|2635286|emb|CAB14781| (Z99118) Lon-like
ATP-dependent protease [Bacillus subtilis]
Length = 552
Score = 47.6 bits (111), Expect = 3e-04
Identities = 54/179 (30%), Positives = 88/179 (48%), Gaps = 38/179 (21%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
L+ K RPK F ++VGQE ++AL AL H ++ G GVGKT AR+ + +
Sbjct: 59 LSEKVRPKSFKDIVGQEDGIKALKAALCGPNPQHVIVY-GPPGVGKTAAARLVLEEAK-K 116
Query: 196 QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVRE----MIENAQYMPSRGKFK 363
S LD R+ + D + D + + M + P +G
Sbjct: 117 HKQSPFKEQAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPKQGAVT 176
Query: 364 -----VYLIDEVHMLSKAAFNALLKTLEEP----------------PPHV---------- 450
V IDE+ L N +LK LE+ P H+
Sbjct: 177 HAHGGVLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYSEENTQIPNHIHDIFQNGLPA 236
Query: 451 --KFLLATTD-PQKLPVTVLSRCLQFNLKRLDEEQIQ 552
+ + ATT P ++P + SRCL+ + L++++++
Sbjct: 237 DFRLIGATTRMPNEIPPAIRSRCLEVFFRELEKDELK 273
>gi|6647441|sp|O06286|CLPC_MYCTU PROBABLE ATP-DEPENDENT CLP PROTEASE
ATP-BINDING SUBUNIT >gi|2113980|emb|CAB08932| (Z95557)
clpC [Mycobacterium tuberculosis]
Length = 848
Score = 47.3 bits (110), Expect = 4e-04
Identities = 37/128 (28%), Positives = 61/128 (46%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRL--------HHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
++GQE V+A+S A+ R +F+F G GVGKT +++ A L
Sbjct: 518 IIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFL------- 570
Query: 208 ADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVYL 372
G A + ID+G + D G ++ ++ E + P F V L
Sbjct: 571 ---FGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKP----FSVVL 623
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
DE+ + +N+LL+ LE+
Sbjct: 624 FDEIEKAHQEIYNSLLQVLED 644
>gi|140227|sp|P24428|CLPC_MYCLE PROBABLE ATP-DEPENDENT CLP PROTEASE
ATP-BINDING SUBUNIT >gi|44417|emb|CAA37573| (X53488)
protein product N-terminal fragment (AA 1-649)
[Mycobacterium leprae]
Length = 649
Score = 47.3 bits (110), Expect = 4e-04
Identities = 37/128 (28%), Positives = 61/128 (46%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRL--------HHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
++GQE V+A+S A+ R +F+F G GVGKT +++ A L
Sbjct: 518 IIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFL------- 570
Query: 208 ADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVYL 372
G A + ID+G + D G ++ ++ E + P F V L
Sbjct: 571 ---FGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKP----FSVVL 623
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
DE+ + +N+LL+ LE+
Sbjct: 624 FDEIEKAHQEIYNSLLQVLED 644
>gi|3834293 (U80846) No definition line found [Caenorhabditis elegans]
Length = 1032
Score = 46.9 bits (109), Expect = 5e-04
Identities = 82/391 (20%), Positives = 143/391 (35%), Gaps = 6/391 (1%)
Frame = -2
Query: 1499 LEGPLNS----MRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHT 1332
+ GP S + ++ S P+S PS P T T +SG+ SI S + S T
Sbjct: 511 VSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITISGSSSIIVSTVSGSTVSGST 570
Query: 1331 DTF-SS*CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASL 1155
T S+ +TA ++ +P S P +P +
Sbjct: 571 GTSQSTLASSTATPGSSSTVPSSSSPQPSS-----------------------QSPAPNT 607
Query: 1154 PTDAISGASTLCPCPSAEIRSGATTGTGRKA-SIRSTAISNPTRGLGAKCKS*RPLIAIW 978
+ S S+ P PS S TG+ + + + S+PT G+ +
Sbjct: 608 GSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFS---VATEVT 664
Query: 977 YQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAIT 798
QS SG +PSP++ + TS + ++ P S S+ T
Sbjct: 665 SQSTVPSGSSLGTQSTNSSPSPSSLSPSTS--------GMSTLTSEPSPSSTQSSGAQST 716
Query: 797 RNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSAALE 618
+ SP+P+ + +++ S+ S + S +A + T P+ + + S P+A+
Sbjct: 717 LTTPSPNPSQSTSSLESS--TSGATTSSGSAGTTMTSPSQSSSVGSSQ--GSTSPAASTT 772
Query: 617 XXXXXXXXXXXXXXVRILAI*RWICSSSKRFRLNCKQRDNTVTGNF*GSVVARRNFTCGG 438
+ S+S + +Q +V+ N GS V R + G
Sbjct: 773 SGEMTSQGSTQTPGSSV--------STSAAILTSTQQ---SVSTNSPGSTVTRPSTVSGS 821
Query: 437 GSSSVFSSALNAALESICTSSIR*TLNLPLEGIYCAF 327
SS S+ + E+ + S T + P + C F
Sbjct: 822 TSSG--STVTVGSTEASTSGSSLATTSAPKPSVTCLF 856
>gi|6433960|emb|CAB60731.1| (Y19185) aczonin [Mus musculus]
Length = 5038
Score = 46.1 bits (107), Expect = 0.001
Identities = 55/213 (25%), Positives = 81/213 (37%), Gaps = 9/213 (4%)
Frame = -3
Query: 1381 VPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQ 1202
V P KA QP P S A P P + P + A+ Q
Sbjct: 270 VAQQPGPAKATVQQPGPAKSPAQ-------------PAGTGKSPAQPPVT---AKPPAQQ 313
Query: 1201 NGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQ---PQEQVGKRASAALPSQIL 1031
G+ + + P QTP G A P P P +Q G + ++ +P
Sbjct: 314 AGLEKTSLQQPGPKSLAQTPGQGKVPPGPAKSPAQQPGTAKLPAQQPGPQTASKVPGPTK 373
Query: 1030 HVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPG 851
+ + P TK + + +P Q + T P+ P AK QP
Sbjct: 374 TPAQLSGPGKTPAQQPGPTKPSPQQPIPAKPQPQQPV---ATKPQPQQPAP---AKPQPQ 427
Query: 850 PPTP------RPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP 743
PTP +P+PAK QP+ +PA +H L +P++ QP
Sbjct: 428 HPTPAKPQPQQPTPAKPQPQQPTPAKPQPQHPGLGKPSAQQP 469
Score = 36.4 bits (82), Expect = 0.78
Identities = 66/221 (29%), Positives = 81/221 (35%), Gaps = 24/221 (10%)
Frame = -3
Query: 1255 LPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQE 1076
+P + P SKS + Q ++ P QTP + A P P VQ
Sbjct: 227 IPQDIP-SKSVSSQQAEKTKPQAPGTAKPSQQSPAQTPAQQAKPVAQQPGPAKATVQ--- 282
Query: 1075 QVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHH--LQTP 902
Q G S A P+ +G AQPP P +Q + LQ P
Sbjct: 283 QPGPAKSPAQPAG------------------TGKSPAQPPVTAKPPAQQAGLEKTSLQQP 324
Query: 901 -PKALVAVP----------------ESCAKL---QPGPPTPR--PSPAKTQPRLLSPAIV 788
PK+L P AKL QPGP T P P KT +L P
Sbjct: 325 GPKSLAQTPGQGKVPPGPAKSPAQQPGTAKLPAQQPGPQTASKVPGPTKTPAQLSGPGKT 384
Query: 787 DHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKTNHRVMNRQQPWKAL* 608
+ PT P P+ QP A V Q P PAK Q P A
Sbjct: 385 PAQQ---PGPTKPSPQ--QPIPAKPQPQQPVATKPQPQQPAPAKP-----QPQHPTPAKP 434
Query: 607 SPHRP 593
P +P
Sbjct: 435 QPQQP 439
Score = 33.2 bits (74), Expect = 6.8
Identities = 36/157 (22%), Positives = 59/157 (36%), Gaps = 5/157 (3%)
Frame = -3
Query: 1159 PYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAALPSQ----ILHVD-SVPNVSRDV 995
P + P + A APQP P+ K+ SAALP Q + V+ P + +
Sbjct: 617 PLVKQPTLHGPTPATAPQPPVAEALPKPAPPKKPSAALPEQAKAPVADVEPKQPKTTETL 676
Query: 994 H*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQ 815
PS PA+ ++ + T P ++ P T P +K
Sbjct: 677 TDSPSSAAATSKPAILSSQVQAQA--QVTTAPPLKTDSAKTSQSFPPTGDTITPLDSKAM 734
Query: 814 PRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTP 689
PR S + + + P + ++P +A +VTP
Sbjct: 735 PRPASDSKIVSHPGPTSESKDPVQKKEEPKKA----QTKVTP 772
>gi|4506489|ref|NP_002906.1|| replication factor C (activator 1) 3
(38kD) >gi|3915601|sp|P40938|AC13_HUMAN ACTIVATOR 1 38
KD SUBUNIT (REPLICATION FACTOR C 38 KD SUBUNIT) (A1 38
KD SUBUNIT) (RF-C 38 KD SUBUNIT) (RFC38) >gi|1498259
(L07541) replication factor C, 38-kDa subunit [Homo
sapiens]
Length = 356
Score = 46.1 bits (107), Expect = 0.001
Identities = 44/186 (23%), Positives = 82/186 (43%), Gaps = 12/186 (6%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTT--------IARIFAK 180
K+RP L + L N ++ G H ++ G G GK T + + +
Sbjct: 7 KYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVY-GPSGAGKKTRIMCILRELYGVGVE 65
Query: 181 SLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGV--DDVREMIENAQYMPSRG 354
L E T P + I ++++ DA ++ V ++ + + +Q + +
Sbjct: 66 KLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNS 125
Query: 355 K--FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLK 528
+ FKV L+ EV L+K A +AL +T+E+ + +L K+ + SRCL +
Sbjct: 126 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 185
Query: 529 RLDEEQIQRQIAKILTAE 582
E I ++ + E
Sbjct: 186 APSIEDICHVLSTVCKKE 203
>gi|5679088|gb|AAD46852.1|AF160912_1 (AF160912) BcDNA.LD06837
[Drosophila melanogaster]
Length = 356
Score = 46.1 bits (107), Expect = 0.001
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKS------- 183
K+RP+ ++L + L N + H +F G G GK T +
Sbjct: 7 KYRPRELSKLDFHKDQAENLRNLCKQSDFPH-LMFYGPSGAGKKTRIMCLLREMYGSGVE 65
Query: 184 -LNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAA--SNTGVDDVREMIENAQYMPSRG 354
L E T P R + + ++++ DA T V D+ + + + G
Sbjct: 66 RLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISG 125
Query: 355 K--FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLK 528
+ FKV +I E L+K A +AL +T+E+ + +++ ++ + SRCL +
Sbjct: 126 QREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVA 185
Query: 529 RLDEEQI 549
+E +I
Sbjct: 186 APNETEI 192
>gi|6433962|emb|CAB60732.1| (Y19186) aczonin [Mus musculus]
Length = 4833
Score = 46.1 bits (107), Expect = 0.001
Identities = 55/213 (25%), Positives = 81/213 (37%), Gaps = 9/213 (4%)
Frame = -3
Query: 1381 VPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQ 1202
V P KA QP P S A P P + P + A+ Q
Sbjct: 270 VAQQPGPAKATVQQPGPAKSPAQ-------------PAGTGKSPAQPPVT---AKPPAQQ 313
Query: 1201 NGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQ---PQEQVGKRASAALPSQIL 1031
G+ + + P QTP G A P P P +Q G + ++ +P
Sbjct: 314 AGLEKTSLQQPGPKSLAQTPGQGKVPPGPAKSPAQQPGTAKLPAQQPGPQTASKVPGPTK 373
Query: 1030 HVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPG 851
+ + P TK + + +P Q + T P+ P AK QP
Sbjct: 374 TPAQLSGPGKTPAQQPGPTKPSPQQPIPAKPQPQQPV---ATKPQPQQPAP---AKPQPQ 427
Query: 850 PPTP------RPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP 743
PTP +P+PAK QP+ +PA +H L +P++ QP
Sbjct: 428 HPTPAKPQPQQPTPAKPQPQQPTPAKPQPQHPGLGKPSAQQP 469
Score = 36.4 bits (82), Expect = 0.78
Identities = 66/221 (29%), Positives = 81/221 (35%), Gaps = 24/221 (10%)
Frame = -3
Query: 1255 LPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQE 1076
+P + P SKS + Q ++ P QTP + A P P VQ
Sbjct: 227 IPQDIP-SKSVSSQQAEKTKPQAPGTAKPSQQSPAQTPAQQAKPVAQQPGPAKATVQ--- 282
Query: 1075 QVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHH--LQTP 902
Q G S A P+ +G AQPP P +Q + LQ P
Sbjct: 283 QPGPAKSPAQPAG------------------TGKSPAQPPVTAKPPAQQAGLEKTSLQQP 324
Query: 901 -PKALVAVP----------------ESCAKL---QPGPPTPR--PSPAKTQPRLLSPAIV 788
PK+L P AKL QPGP T P P KT +L P
Sbjct: 325 GPKSLAQTPGQGKVPPGPAKSPAQQPGTAKLPAQQPGPQTASKVPGPTKTPAQLSGPGKT 384
Query: 787 DHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKTNHRVMNRQQPWKAL* 608
+ PT P P+ QP A V Q P PAK Q P A
Sbjct: 385 PAQQ---PGPTKPSPQ--QPIPAKPQPQQPVATKPQPQQPAPAKP-----QPQHPTPAKP 434
Query: 607 SPHRP 593
P +P
Sbjct: 435 QPQQP 439
Score = 33.2 bits (74), Expect = 6.8
Identities = 36/157 (22%), Positives = 59/157 (36%), Gaps = 5/157 (3%)
Frame = -3
Query: 1159 PYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAALPSQ----ILHVD-SVPNVSRDV 995
P + P + A APQP P+ K+ SAALP Q + V+ P + +
Sbjct: 617 PLVKQPTLHGPTPATAPQPPVAEALPKPAPPKKPSAALPEQAKAPVADVEPKQPKTTETL 676
Query: 994 H*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQ 815
PS PA+ ++ + T P ++ P T P +K
Sbjct: 677 TDSPSSAAATSKPAILSSQVQAQA--QVTTAPPLKTDSAKTSQSFPPTGDTITPLDSKAM 734
Query: 814 PRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTP 689
PR S + + + P + ++P +A +VTP
Sbjct: 735 PRPASDSKIVSHPGPTSESKDPVQKKEEPKKA----QTKVTP 772
>gi|3834294 (U80846) No definition line found [Caenorhabditis elegans]
Length = 2232
Score = 45.7 bits (106), Expect = 0.001
Identities = 61/270 (22%), Positives = 106/270 (38%), Gaps = 10/270 (3%)
Frame = -2
Query: 1499 LEGPLNS----MRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHT 1332
+ GP S + ++ S P+S PS P T T +SG+ SI S + S T
Sbjct: 511 VSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITISGSSSIIVSTVSGSTVSGST 570
Query: 1331 DTF-SS*CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASL 1155
T S+ +TA ++ +P S P +P +
Sbjct: 571 GTSQSTLASSTATPGSSSTVPSSSSPQPSS-----------------------QSPAPNT 607
Query: 1154 PTDAISGASTLCPCPSAEIRSGATTGTGRKA-SIRSTAISNPTRGLGAKCKS*RPLIAIW 978
+ S S+ P PS S TG+ + + + S+PT G+ +
Sbjct: 608 GSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFS---VATEVT 664
Query: 977 YQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAIT 798
QS SG +PSP++ + TS + ++ P S S+ T
Sbjct: 665 SQSTVPSGSSLGTQSTNSSPSPSSLSPSTS--------GMSTLTSEPSPSSTQSSGAQST 716
Query: 797 RNSRSPSPAINAANITST*VRSTVPSMS----RTAPSRNT 690
+ SP+P+ + +++ S+ +T S S T+PS+++
Sbjct: 717 LTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSS 756
Score = 39.9 bits (91), Expect = 0.069
Identities = 81/336 (24%), Positives = 129/336 (38%), Gaps = 12/336 (3%)
Frame = -2
Query: 1649 TSGA*PSNRVNPWVKSATERVDCRYSNSGSNAKHRT-----LFS*ETKAA*AANCLEGPL 1485
TS PS +NP + T + GS A T FS T+ + G
Sbjct: 615 TSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTVPSGSS 674
Query: 1484 NSMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGA 1305
+STN+S P+S + PS TL T +PS +S+ + T S
Sbjct: 675 LGTQSTNSSPSPSS-LSPSTSGMSTL-------TSEPSPSSTQSSGAQSTLTTPSPNPSQ 726
Query: 1304 TAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPT-DAISGAS 1128
+ + SS G T + S + +P AS + + S S
Sbjct: 727 STSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQG-----STSPAASTTSGEMTSQGS 781
Query: 1127 TLCPCPSAEIRSGATTGTGRKASIRS--TAISNPTRGLGAKCKS*RPLIAIWYQSCTTSG 954
T P S + T T + S S + ++ P+ G+ + + +TSG
Sbjct: 782 TQTPGSSVSTSAAILTSTQQSVSTNSPGSTVTRPSTVSGSTSSG--STVTVGSTEASTSG 839
Query: 953 C-VCSANKA---TFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSR 786
V S++ A + NP+P+ T+ G+S T QS S + +S
Sbjct: 840 SSVASSSPAPSTSQNPNPS-TSSGSSMIT---------------QSPYPSQSTSPVESST 883
Query: 785 SPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSR 642
+PSP +TST S PS S T S + ++ +S++ S+
Sbjct: 884 TPSPGSPGTTLTST---SPSPSQSTTIGSTQGSTSPGISTTSEEMTSQ 928
>gi|1085432|pir||S55315 mucin (clone PGM-2A) - pig
>gi|2136504|pir||I47141 gastric mucin - pig (fragment)
>gi|915208 (U10281) gastric mucin [Sus scrofa]
Length = 528
Score = 45.3 bits (105), Expect = 0.002
Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 7/266 (2%)
Frame = -2
Query: 1481 SMRSTNASHCPTSV---IFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*C 1311
S++ +++S PT+ + PS +P +S T S+ PS S+ ++ T S
Sbjct: 275 SVQPSSSSSAPTTSATSVQPSSSSSPP-----ISSTISVQPSSSSSSPTTSTTSVQPSSS 329
Query: 1310 GATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISGA 1131
G+ P SSPPI T S + V P + S PT + A
Sbjct: 330 GSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSSPTTSTTSVQP-SSSGSAPT---TSA 385
Query: 1130 STLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGC 951
+++ P S+ + + + T R +S ST I T + S TTS
Sbjct: 386 TSVQPSSSSSVPTTSATSV-RSSSSSSTPIPTTTSVQPSSSSS----------VPTTSAT 434
Query: 950 VCSANKATFNPSPANTT----EGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRS 783
+ ++ P P+ T+ +S T +S++PP S ++ V + +S S
Sbjct: 435 SVQTSSSSSTPIPSTTSVQPSSSSSAPTTSATSVQPSSSSSPPIS--STISVQPSSSSSS 492
Query: 782 PSPAINAANITST*VRSTVPSMSRTAPSRNTPP 684
P+ + + +S+ T + S S ++PP
Sbjct: 493 PTTSTTSVQPSSSGSAPTTSATSVQPSSSSSPP 525
Score = 39.5 bits (90), Expect = 0.090
Identities = 65/286 (22%), Positives = 113/286 (38%), Gaps = 15/286 (5%)
Frame = -2
Query: 1481 SMRSTNASHCP----TSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS* 1314
S+RS+++S P TSV S PT + S+ PS ST + T S
Sbjct: 227 SVRSSSSSSTPIPSTTSVQPSSSSSAPT------TSATSVQPSSSSSTPIPSTTSVQPSS 280
Query: 1313 CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISG 1134
+ P SSPPI T I + +S PT
Sbjct: 281 SSSAPTTSATSVQPSSSSSPPISST-----------------ISVQPSSSSSSPT----- 318
Query: 1133 ASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSG 954
ST PS+ + T+ T + S S+ + T + S P + ++SG
Sbjct: 319 TSTTSVQPSSSGSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSSPTTSTTSVQPSSSG 378
Query: 953 CVCSANKATFNPSPANTTEGTSCC---------T*ILCKASARASNTPPQSGENSAKVAI 801
+ + + PS +++ TS T I S + S++ ++ V
Sbjct: 379 SAPTTSATSVQPSSSSSVPTTSATSVRSSSSSSTPIPTTTSVQPSSSSSVPTTSATSVQT 438
Query: 800 TRNSRSPSPAINAANITST*VRSTVPSMSRTA--PSRNTPPA*AMAWSSKDKPSRNEPSA 627
+ +S +P P+ + +S+ S+ P+ S T+ PS ++ P + S + S + P+
Sbjct: 439 SSSSSTPIPSTTSVQPSSS---SSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSSPTT 495
Query: 626 A 624
+
Sbjct: 496 S 496
>gi|2498878|sp|Q56313|RUVB_THEMA HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|1063668 (U38840) RuvB protein [Thermotoga maritima]
>gi|4982307|gb|AAD36795.1|AE001812_5 (AE001812) Holliday
junction DNA helicase [Thermotoga maritima]
Length = 334
Score = 45.3 bits (105), Expect = 0.002
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALES----GRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQ 198
RPK E +GQE+V + LS ALE+ G + L G G+GKTT+A I A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
Query: 199 GTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLID 378
++ P + + + A + S + V ID
Sbjct: 80 HVTSGPV------------------------------LVKQGDMAAILTSLERGDVLFID 109
Query: 379 EVHMLSKAAFNALLKTLEE 435
E+H L+KA L +E+
Sbjct: 110 EIHRLNKAVEELLYSAIED 128
>gi|5457543|emb|CAB49034.1| (AJ248283) activator 1, replication
factor C, small subunit [Pyrococcus abyssi]
Length = 1437
Score = 45.3 bits (105), Expect = 0.002
Identities = 20/43 (46%), Positives = 31/43 (71%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGK 153
K+RP++ E+VGQEH+V+ L + +++G + H LF G GVGK
Sbjct: 20 KYRPQKLEEIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGK 61
Score = 39.1 bits (89), Expect = 0.12
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +1
Query: 265 DLLEIDAASNTGVDDVREMI-ENAQYMPSRG-KFKVYLIDEVHMLSKAAFNALLKTLEEP 438
+ LE++A+ G++ +RE + E A+ P G FK+ +DE L++ A AL +T+E
Sbjct: 579 NFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF 638
Query: 439 PPHVKFLLA 465
+V+F+L+
Sbjct: 639 SSNVRFILS 647
>gi|586900|sp|P37571|MECB_BACSU NEGATIVE REGULATOR OF GENETIC
COMPETENCE MECB >gi|2118112|pir||I40508 adenosine
triphosphatase clpC - Bacillus subtilis >gi|442360
(U02604) ClpC adenosine triphosphatase [Bacillus
subtilis] >gi|467474|dbj|BAA05320| (D26185) clpA/clpB
family [Bacillus subtilis] >gi|2632353|emb|CAB11862|
(Z99104) class III stress response-related ATPase
[Bacillus subtilis]
Length = 810
Score = 44.9 bits (104), Expect = 0.002
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQG 201
+ ++GQ+ V A++ A+ R +F+F G GVGKT +AR A+S+
Sbjct: 508 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI----- 562
Query: 202 TSADPCGRCTACLDIDVGRYID-----LLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
G + + ID+ Y++ L G D+ ++ E + P + V
Sbjct: 563 -----FGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKP----YSV 613
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
L+DE+ FN LL+ LE+
Sbjct: 614 VLLDEIEKAHPDVFNILLQVLED 636
>gi|3874848|emb|CAA94339.1| (Z70307) Similarity to Human activator 1
38 KD subunit (SW:AC13_HUMAN); cDNA EST CEESG65F comes
from this gene; cDNA EST yk267e6.5 comes from this gene;
cDNA EST yk394g6.3 comes from this gene; cDNA EST
yk394g6.5 comes from t...
Length = 354
Score = 44.9 bits (104), Expect = 0.002
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Frame = +1
Query: 25 KWRPKRFAELVGQE----HVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL-- 186
K+RPK +L+G++ H+ +A S LF G G GK T + + L
Sbjct: 7 KYRPK---DLLGKDGVDYHIEQANHLKFLSADCMPHLLFCGPSGAGKKTRIKCLLRELYG 63
Query: 187 ------NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGV---DDVREMIENAQY 339
+ P + + +I++ D V D V+EM + +Q
Sbjct: 64 VGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQI 123
Query: 340 -MPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQ 516
S+ FKV ++ E L++ A + L +T+E+ + K +L+ ++ + SRC+
Sbjct: 124 ESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCII 183
Query: 517 FNLKRLDEEQIQRQIAKILTAE 582
N+ +E + + + K++ E
Sbjct: 184 INVPAPTDEDVTKVLRKVIERE 205
>gi|6322209|ref|NP_012284.1|MUC1| cell surface flocculin with
structure similar to serine/threonine-rich GPI-anchored
cell wall proteins; Muc1p >gi|728850|sp|P08640|AMYH_YEAST
GLUCOAMYLASE S1/S2 PRECURSOR (GLUCAN
1,4-ALPHA-GLUCOSIDASE) (1,4-ALPHA-D-GLUCAN
GLUCOHYDROLASE) >gi|626156|pir||S48478 glucan
1,4-alpha-glucosidase (EC 3.2.1.3) - yeast (Saccharomyces
cerevisiae) >gi|557822|emb|CAA86176| (Z38061) mal5, sta1,
len: 1367, CAI: 0.3, AMYH_YEAST P08640 GLUCOAMYLASE S1
(EC 3.2.1.3) [Saccharomyces cerevisiae] >gi|1304387
(U30626) glucoamylase [Saccharomyces cerevisiae var.
diastaticus]
Length = 1367
Score = 44.5 bits (103), Expect = 0.003
Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 4/262 (1%)
Frame = -2
Query: 1472 STNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGATAVL 1293
ST A PT+ ++PTP TS P ++T C+ T S T
Sbjct: 255 STTAPATPTTTSCTKEKPTPPTTTSCTK--EKPTPPHHDTTPCTKKKTTTSK----TCTK 308
Query: 1292 RNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISGASTLCPC 1113
+ +P SS +A + + +S P S ++T
Sbjct: 309 KTTTPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTT--ES 366
Query: 1112 PSAEIRSGATTGTGRKASIRSTAISN---PTRGLGAKCKS*RPLIAIWYQSCTTSGCVCS 942
SA + S T + + +T S+ PT S P+ + +S +++ S
Sbjct: 367 SSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTES-SSAPVTSS 425
Query: 941 ANKATFNPSPANTTEGTSC-CT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAIN 765
+++ P ++TTE +S T ++S+ TP S S+ +T ++ S A
Sbjct: 426 TTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPV 485
Query: 764 AANITST*VRSTVPSMSRTAPSRNTP 687
+ST S+ P S T S + P
Sbjct: 486 PTPSSSTTESSSAPVTSSTTESSSAP 511
Score = 37.5 bits (85), Expect = 0.35
Identities = 59/291 (20%), Positives = 109/291 (37%), Gaps = 6/291 (2%)
Frame = -2
Query: 1490 PLNSMRSTNASHCP--TSVIFPSKEPTPTLFTSVVSGTRSIAPSEEES-TDCSAHTDTFS 1320
P S +T +S P +S S P PT +S + + AP+ S T+ S+ T S
Sbjct: 486 PTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSS 545
Query: 1319 S*CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAI 1140
+ ++A + SS P+ + E S AP + +
Sbjct: 546 TTESSSAPVPTPSSSTTESSSTPVTSSTTESSS----------------APVPTPSSSTT 589
Query: 1139 SGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTT 960
+S P PS+ ++ +S + + S P + S P+ T
Sbjct: 590 ESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTESSS-APV-------PTP 641
Query: 959 SGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSG---ENSAKVAITRNS 789
S ++ A ++TTE +S ++ +S+ P S +SA V +
Sbjct: 642 SSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTE 701
Query: 788 RSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSAALE 618
S +P ++ T+ + VP+ S + ++ P + S+ + S S+ E
Sbjct: 702 SSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTE 758
>gi|3322841 (AE001230) ATPase (clpC) [Treponema pallidum]
Length = 814
Score = 44.1 bits (102), Expect = 0.004
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQG 201
A + GQ + L+ A+ R+ +FLF G GVGKT +A+ A+ L
Sbjct: 505 ATVRGQREAIATLARAIVRARVGISSDTRPIGSFLFLGPTGVGKTLLAKTLAEFL----- 559
Query: 202 TSADPCGRCTACLDIDVGRYIDLLEIDAASN-----TGVDDVREMIENAQYMPSRGKFKV 366
G A + ID+ Y++ G ++ + E ++ P F V
Sbjct: 560 -----FGSADALIRIDMSDYMERYNTSRLMGAPPGYVGFENGGLLTERVRHRP----FSV 610
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
L+DE+ FN LL+ LEE
Sbjct: 611 ILLDEIEKAHPDVFNVLLQVLEE 633
>gi|2498874|sp|P75242|RUVB_MYCPN HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|2146157|pir||S73632 Holliday junction DNA helicase
ruvB - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1673978 (AE000028) Mycoplasma pneumoniae, Holliday
junction DNA helicase RuvB; similar to GenBank Accession
Number B64061, from H. influenzae [Mycoplasma
pneumoniae]
Length = 307
Score = 43.8 bits (101), Expect = 0.005
Identities = 20/52 (38%), Positives = 34/52 (64%), Gaps = 4/52 (7%)
Frame = +1
Query: 34 PKRFAELVGQEHVVRALSNALESGRLHHA----FLFTGTRGVGKTTIARIFAKSLN 189
P FAE VG++ ++ + ++++ R++ A L G GVGKTT+AR+ A +N
Sbjct: 8 PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMN 63
>gi|6403465|gb|AAF07822.1|AF138789_1 (AF138789) multidomain
presynaptic cytomatrix protein Piccolo [Rattus
norvegicus]
Length = 4880
Score = 43.4 bits (100), Expect = 0.006
Identities = 63/257 (24%), Positives = 85/257 (32%), Gaps = 4/257 (1%)
Frame = -3
Query: 1381 VPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQ 1202
V P KA QP P S A P P + P A+ G Q
Sbjct: 272 VAQQPGSAKATVQQPGPAKSPAQ-------------PAGTGKSPAQPP-----AKTPGQQ 313
Query: 1201 NGIG-TSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDP---VQPQEQVGKRASAALPSQI 1034
G+ TS P QTP G P P P +Q G + +A +P
Sbjct: 314 AGLEKTSSSQQPGPKSLAQTPGHGKFPLGPVKSPAQQPGTAKHPAQQPGPQTAAKVPGPT 373
Query: 1033 LHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQP 854
+ P TK + + +P Q + P ++ A P+
Sbjct: 374 KTPAQQSGPGKTPAQQPGPTKPSPQQPIPAKPQPQQPVATKTQPQQSAPAKPQPQQPAPA 433
Query: 853 GPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQ 674
P +P+PAK QP+ +PA QP P QP P H Q
Sbjct: 434 KPQPQQPTPAKPQPQPPTPA--------KPQPQPPTATKPQP-------QPPTATKPHHQ 478
Query: 673 WPGPAKTNHRVMNRQQPWKAL 611
PG AK + QQP K++
Sbjct: 479 QPGLAKP-----SAQQPTKSI 494
>gi|1563721|emb|CAA69406| (Y08238) heat shock protein [Helicobacter
pylori]
Length = 856
Score = 43.4 bits (100), Expect = 0.006
Identities = 38/128 (29%), Positives = 62/128 (47%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNAL--------ESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
+VGQE ++A++ A+ +S + +FLF G GVGKT A+ A+ L
Sbjct: 570 VVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKN- 628
Query: 208 ADPCGRCTACLDIDVGRYIDLLEI-----DAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ ID+ Y++ I A G ++ ++ E + P + V L
Sbjct: 629 ---------LIRIDMSEYLEKHAITRLIGPAPGYVGYEEGGQLTEAVRRKP----YSVVL 675
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
+DEV FN LL+ L+E
Sbjct: 676 LDEVEKAHPDVFNLLLQVLDE 696
>gi|1314297 (U40604) ClpC ATPase [Listeria monocytogenes]
Length = 825
Score = 43.0 bits (99), Expect = 0.008
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
++GQ+ V+A+S A+ R +F+F G GVGKT +AR A+S+
Sbjct: 514 VIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESM------- 566
Query: 208 ADPCGRCTACLDIDVGRYIDLLEI-----DAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
G + + ID+ Y++ G ++ ++ E + P + V L
Sbjct: 567 ---FGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKP----YSVVL 619
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
+DE+ FN LL+ L++
Sbjct: 620 LDEIEKAHPDVFNMLLQVLDD 640
>gi|118810|sp|P04526|DPA4_BPT4 DNA POLYMERASE ACCESSORY PROTEIN 44
(PROTEIN GP44) (CLAMP LOADER LARGE SUBUNIT)
>gi|75935|pir||IDBPA4 DNA polymerase accessory protein
44 - phage T4 >gi|215905 (M10160) DNA polymerase
accessory protein g44 [coliphage T4]
>gi|5354262|gb|AAD42469.1|AF158101_56 (AF158101) DNA
polymerase accessory protein [coliphage T4]
Length = 319
Score = 43.0 bits (99), Expect = 0.008
Identities = 68/325 (20%), Positives = 133/325 (40%), Gaps = 11/325 (3%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
+L +K+RP E + + G++ H L + + G GKTT+A+ +N
Sbjct: 10 ILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA 69
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN-AQYMPSRGKFKVY 369
D++ ++ S+ +D VR + N A G+ KV
Sbjct: 70 ------------------------DMMFVN-GSDCKIDFVRGPLTNFASAASFDGRQKVI 104
Query: 370 LIDEVHMLSKAAFNALLKT-LEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNL-KRLDEE 543
+IDE A L++ +E + ++ + + + SRC + DE+
Sbjct: 105 VIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDED 164
Query: 544 QIQ------RQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIAYAG-GVLRE 702
+I+ R++ +I E I D ++ + + +Y+ GVL
Sbjct: 165 KIEMMKQMIRRLTEICKHEGIAIADMKVV--AALVKKNFPDFRKTIGELDSYSSKGVLDA 222
Query: 703 GAVRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALH-RIQ 879
G + L T DR ++ +L +L D +L A +++ D+ + LAE ++ R+
Sbjct: 223 GIL--SLVTNDRGAIDDVLESLKNKDVKQLR---ALAPKYAADYSWFVGKLAEEIYSRVT 277
Query: 880 VQQLVPSVVFAGDGLNVALLAEQTQPEVVQLWYQMA 987
Q ++ G+ +A T+ + L+ Q+A
Sbjct: 278 PQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLA 313
>gi|6319562|ref|NP_009644.1|RFC5| Subunit 5 of Replication Factor C;
homologous to human RFC 38 kDa subunit; Rfc5p
>gi|586518|sp|P38251|RFC5_YEAST ACTIVATOR 1 SUBUNIT 5
(REPLICATION FACTOR C SUBUNIT 5) >gi|1078327|pir||S48257
replication factor C chain RFC5 - yeast (Saccharomyces
cerevisiae) >gi|476048|emb|CAA55595| (X78993) YBR0810
[Saccharomyces cerevisiae] >gi|536354|emb|CAA85036|
(Z35956) ORF YBR087w [Saccharomyces cerevisiae]
>gi|841471 (U26031) Rfc5p [Saccharomyces cerevisiae]
Length = 354
Score = 43.0 bits (99), Expect = 0.008
Identities = 49/197 (24%), Positives = 95/197 (47%), Gaps = 28/197 (14%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGR-LHHAFLFTGTRGVGKTTIARIFAKSLNCEQG 201
K+RPK L E + L + + R L H L+ G G GK T +S+
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLY-GPNGTGKKTRCMALLESI----- 60
Query: 202 TSADPCGRCTACLDIDVGRYIDL----LEIDAASNT----------GVDD---VREMI-- 324
G L IDV +++ LE++ S+ G +D ++E++
Sbjct: 61 -----FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKE 115
Query: 325 ----ENAQYMPSRG----KFKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQ 480
E + S+ ++K +I+E + L+K A AL +T+E+ +++ ++
Sbjct: 116 VAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175
Query: 481 KLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIE 615
+ + SRCL + +I ++ ++T E+I + I++
Sbjct: 176 PIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILK 220
>gi|6458295|gb|AAF10176.1|AE001918_1 (AE001918) Holliday junction
DNA helicase [Deinococcus radiodurans]
Length = 333
Score = 42.6 bits (98), Expect = 0.010
Identities = 52/159 (32%), Positives = 70/159 (43%), Gaps = 11/159 (6%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
RPK E VGQE + L L++ R L H LF G G+GKTT+A I A L
Sbjct: 12 RPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLF-GPPGLGKTTLAHIIAYELGVN 70
Query: 196 ----QGTSADPCGRCTACL--DIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK 357
G + + G A L ++ G D+L ID G + P+
Sbjct: 71 IRVTSGPAIEKPGDLAAILTNSLEEG---DVLFIDEIHRLG------RVAEEHLYPAMED 121
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 507
FK +D V AA +T+E P P + ATT P + + SR
Sbjct: 122 FK---LDIVLGQGPAA-----RTIELPLPRFTLVGATTRPGLITAPMRSR 163
>gi|4585605|emb|CAB40873.1| (AL049628) putative Clp-family
ATP-binding protease [Streptomyces coelicolor]
Length = 841
Score = 42.6 bits (98), Expect = 0.010
Identities = 35/128 (27%), Positives = 63/128 (48%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
++GQ+ V+ALS A+ R +F+F G GVGKT +++ A+ L ++
Sbjct: 514 VIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKALAEFLFGDED-- 571
Query: 208 ADPCGRCTACLDIDVGRYIDLLEIDAASNT-----GVDDVREMIENAQYMPSRGKFKVYL 372
A + +D+ + + + + G ++ ++ E + P F V L
Sbjct: 572 --------ALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKP----FSVVL 619
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
DEV FN+LL+ LE+
Sbjct: 620 FDEVEKAHPDIFNSLLQILED 640
>gi|5420389|emb|CAB46680.1| (AJ243460) proteophosphoglycan [Leishmania
major]
Length = 383
Score = 42.6 bits (98), Expect = 0.010
Identities = 60/252 (23%), Positives = 110/252 (42%), Gaps = 3/252 (1%)
Frame = -2
Query: 1379 SIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSE 1200
S APS S ++ + SS ++A ++ P SS P ++ S +
Sbjct: 1 SSAPSSSSSAPSASSSSAPSS--SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSA-- 56
Query: 1199 RDWDIVYPLAPCASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGL 1020
P A +S P+ + S A PSA S ++ + ++ S+A S+ +
Sbjct: 57 -------PSASSSSAPSSSSSSA------PSASSSSAPSSSSSAPSASSSSAPSSSSSAP 103
Query: 1019 GAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNT 840
A S S ++S S++ A + S A + +S + A + +S++
Sbjct: 104 SASSSS--------APSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSS 155
Query: 839 PPQSGENSAKVAITRN--SRSPSPAINAANITST*VRSTVPSMSRT-APSRNTPPA*AMA 669
P S +SA A + + S S S A +A++ ++ S+ PS S + APS ++ A + +
Sbjct: 156 APSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSAS 215
Query: 668 WSSKDKPSRNEPSAA 624
SS S + PS++
Sbjct: 216 SSSAPSSSSSAPSSS 230
>gi|3150046 (AF016634) ClpB chaperone homolog [Lactococcus lactis
subsp. cremoris]
Length = 867
Score = 42.6 bits (98), Expect = 0.010
Identities = 35/128 (27%), Positives = 63/128 (48%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNAL--------ESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
+VGQ+ V A+S+A+ + R +FLF G GVGKT +A+ A++L +
Sbjct: 573 VVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSE--- 629
Query: 208 ADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ ID+ Y++ + G D+ ++ E + R + + L
Sbjct: 630 -------EHMVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVR----RNPYTIIL 678
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
+DE+ FN LL+ L++
Sbjct: 679 LDEIEKAHPDVFNILLQVLDD 699
>gi|755163 (U16134) ClpC [Synechococcus sp.]
Length = 839
Score = 42.6 bits (98), Expect = 0.010
Identities = 35/130 (26%), Positives = 64/130 (48%), Gaps = 13/130 (10%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQG 201
+ L+GQ+ V+A+S A+ R+ +F+F+G GVGKT + + A
Sbjct: 525 SRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALA-------- 576
Query: 202 TSADPCGRCTACLDIDVGRYIDLLEIDAASNT-----GVDDVREMIENAQYMPSRGKFKV 366
A G A + +D+ Y++ + + G ++ ++ E + P + V
Sbjct: 577 --AYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRP----YTV 630
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
L+DE+ FN LL+ LE+
Sbjct: 631 VLLDEIEKAHPDVFNLLLQLLED 653
>gi|2493732|sp|P71404|CLPB_HELPY CLPB PROTEIN
>gi|2313356|gb|AAD07330.1| (AE000545) ATP-dependent
protease binding subunit (clpB) [Helicobacter pylori
26695]
Length = 856
Score = 42.6 bits (98), Expect = 0.010
Identities = 37/128 (28%), Positives = 62/128 (47%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNAL--------ESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
+VGQE ++A++ A+ +S + +FLF G GVGKT A+ A+ L
Sbjct: 570 VVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKN- 628
Query: 208 ADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ ID+ Y++ + A G ++ ++ E + P + V L
Sbjct: 629 ---------LIRIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKP----YSVVL 675
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
+DEV FN LL+ L+E
Sbjct: 676 LDEVEKAHPDVFNLLLQVLDE 696
>gi|4154766 (AE001462) HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 42.6 bits (98), Expect = 0.010
Identities = 38/128 (29%), Positives = 62/128 (47%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNAL--------ESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
+VGQE ++A++ A+ +S + +FLF G GVGKT A+ A+ L
Sbjct: 570 VVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKN- 628
Query: 208 ADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ ID+ Y++ I A G ++ ++ E + P + V L
Sbjct: 629 ---------LIRIDMSEYMEKHAISRLIGAAPGYVGYEEGGQLTEAVRRKP----YSVVL 675
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
+DEV FN LL+ L+E
Sbjct: 676 LDEVEKAHPDVFNLLLQVLDE 696
>gi|871784 (L34677) Clp-like ATP-dependent protease binding subunit
[Bos taurus]
Length = 586
Score = 42.2 bits (97), Expect = 0.014
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Frame = +1
Query: 49 ELVGQEHVVRALSNAL--------ESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
+++GQ+ V A+S A+ E R +FLF G GVGKT +A+ A
Sbjct: 410 KVIGQQEAVEAVSRAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLA--------- 460
Query: 205 SADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVY 369
D G + +D+ Y D + A G DD + R + +
Sbjct: 461 -LDMFGSTNDIIRLDMSEYTDRTAVSKLIGTTAGYVGYDDNSNTLTE---KVRRHPYSIV 516
Query: 370 LIDEVHMLSKAAFNALLKTLEE 435
L+DE+ + LL+ L++
Sbjct: 517 LLDEIEKANPQVITLLLQVLDD 538
>gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans]
Length = 961
Score = 42.2 bits (97), Expect = 0.014
Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 34/256 (13%)
Frame = -2
Query: 1481 SMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTF------- 1323
S ST ++ TS + TPT T+ + T + PS ST S+ T+T
Sbjct: 371 SATSTTSTTSTTS----TTSTTPTTSTTSTTSTTTPTPSPSPSTASSSTTETVTPSPKPS 426
Query: 1322 ---SS*CGATAVLRN-----------------NDDLPIRMSSPPIGGTAIEVCSKADWRS 1203
SS T+ L + + P SS P+GG++ S S
Sbjct: 427 PSESSTTSETSSLPSTSTPVVSETPSETKTPTSSSAPPLSSSSPVGGSSSTASSSTSTPS 486
Query: 1202 ERDWDIVYPLAPCASLPTDAISGASTLCPCPSAEIRSGATTG-TGRKASIRSTAISNPTR 1026
E P AS T A+S ST S SG T TG S+ +T+ S P+
Sbjct: 487 E---------TPSAS-STRAVSETSTHI---STSTSSGPETSLTGSSTSVPATSSSVPSS 533
Query: 1025 GLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARAS 846
+ S P+I S T V S++ +TF S + +T+ + T I +S+ S
Sbjct: 534 AIS---PSSTPVI-----SETPRPPVTSSSSSTFVSSTSTSTDCSESSTAIGTHSSSSIS 585
Query: 845 NTPPQSGENSAKVAITRNSR------SPSPAINAANITST*VRSTVPSMS 714
TP S ++ ++ +P +++ +++ + S+VP+ S
Sbjct: 586 ETPSASTPAASPSTSPETTKTLTVFPTPGSSVSTGTTSASTLSSSVPATS 635
Score = 33.2 bits (74), Expect = 6.8
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 11/94 (11%)
Frame = -2
Query: 965 TTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSR 786
T++ S AT S +TT TS T S ++ TP S S + T +
Sbjct: 361 TSTTSTTSTTSATSTTSTTSTTSTTST-TPTTSTTSTTSTTTPTPSPSPSTASSSTTETV 419
Query: 785 SPSP-----------AINAANITST*VRSTVPSMSRTAPSRNTPP 684
+PSP ++ TST V S PS ++T S + PP
Sbjct: 420 TPSPKPSPSESSTTSETSSLPSTSTPVVSETPSETKTPTSSSAPP 464
>gi|2606019 (AF030027) 71 [Equine herpesvirus 4]
Length = 750
Score = 41.8 bits (96), Expect = 0.018
Identities = 63/284 (22%), Positives = 108/284 (37%), Gaps = 30/284 (10%)
Frame = -2
Query: 1493 GPLNSMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS* 1314
GP + T++S+ S PS TPT +S VS T + + E ST + T T +S
Sbjct: 54 GPTTTSSQTSSSN---STQTPSTSQTPTTSSSTVSTTTTSNSTNESSTATATSTATPTST 110
Query: 1313 CGATAVLRNND--DLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAI 1140
+T+ + + P ++ T E + + A + T A
Sbjct: 111 EASTSTTTSTSVSESPTSTTATTAATTTTESTTTESTTAATTTAATTTAATTTAATTTAA 170
Query: 1139 S-----------------GASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAK 1011
+ A+T +A + ATT + +TA + A
Sbjct: 171 TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAA 230
Query: 1010 CKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQ 831
+ A + TT+ +A T + ++T T+ T A A T
Sbjct: 231 TTTAATTTAATTTAATTTAATTTAATPTESSEASSTLAATTADTTADTTADTTADTTADT 290
Query: 830 SGENSAKVAITRNSRSPSPAINAANITST*VR-----------STVPSMSRTAPSRNTPP 684
+ + +A + S S A N + TS V + S + S+NTP
Sbjct: 291 TADTTADTTADTTTTSGSTAANTTSTTSATVTIAPTTFTTKYTTNSSSTGKINTSKNTPK 350
Query: 683 A*AMAWSSKDKPSR 642
+S +KP++
Sbjct: 351 PPQYTTASTEKPTK 364
>gi|4753885|emb|CAB42048.1| (AL049754) putative ATP-dependent
protease ATP-binding subunit [Streptomyces coelicolor]
Length = 853
Score = 41.8 bits (96), Expect = 0.018
Identities = 38/128 (29%), Positives = 61/128 (46%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRLHHA--------FLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
L+GQ VRA+S+A+ R A FLF G GVGKT +A+ A L ++
Sbjct: 562 LIGQTQAVRAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDE--- 618
Query: 208 ADPCGRCTACLDIDVGRYIDLLEI-----DAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
A + ID+ Y + + G ++ ++ E + P + V L
Sbjct: 619 -------RAMVRIDMSEYSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRP----YTVVL 667
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
+DEV F+ LL+ L++
Sbjct: 668 LDEVEKAHPEVFDILLQVLDD 688
>gi|1168973|sp|P44403|CLPB_HAEIN CLPB PROTEIN
>gi|1073890|pir||F64098 ATP-dependent Clp proteinase
regulatory chain B (clpB) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573874 (U32767)
ATP-dependent Clp protease, ATPase subunit (clpB)
[Haemophilus influenzae Rd]
Length = 856
Score = 41.8 bits (96), Expect = 0.018
Identities = 37/128 (28%), Positives = 58/128 (44%), Gaps = 11/128 (8%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
++GQE V A++NA+ R +FLF G GVGKT + + AK L +
Sbjct: 570 VIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSE--- 626
Query: 208 ADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPS---RGKFKVYLID 378
A + ID+ +++ + G E Y+ R + V L+D
Sbjct: 627 -------DAMVRIDMSEFMEKHSVSRL--VGAPPGYVGYEEGGYLTEAVRRRPYSVILLD 677
Query: 379 EVHMLSKAAFNALLKTLEE 435
EV FN LL+ L++
Sbjct: 678 EVEKAHADVFNILLQVLDD 696
>gi|5231279|dbj|BAA81745.1| (AB012390) ClpB [Thermus thermophilus]
Length = 854
Score = 41.8 bits (96), Expect = 0.018
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Frame = +1
Query: 52 LVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQGTS 207
+VGQ+ +RA+++A+ R +FLF G GVGKT +A+ A +L +
Sbjct: 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--- 616
Query: 208 ADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKVYL 372
A + ID+ Y++ + G ++ ++ E + P + V L
Sbjct: 617 -------EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP----YSVIL 665
Query: 373 IDEVHMLSKAAFNALLKTLEE 435
DE+ FN LL+ L++
Sbjct: 666 FDEIEKAHPDVFNILLQILDD 686
>gi|3913042|sp|Q51416|AMIB_PSEAE ATP-DEPENDENT PROTEASE ATP-BINDING
SUBUNIT-LIKE PROTEIN AMIB >gi|628484|pir||S44145 amiB
protein - Pseudomonas aeruginosa
>gi|473109|emb|CAA54405| (X77160) amiB [Pseudomonas
aeruginosa]
Length = 371
Score = 41.4 bits (95), Expect = 0.023
Identities = 45/167 (26%), Positives = 72/167 (42%), Gaps = 9/167 (5%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLHHA--------FLFTGTRGVGKTTIARIFAKSLNCEQG 201
AE++GQE ++A+ + L+ R A LF G GVGKT I R A++L+
Sbjct: 59 AEVLGQEPALQAVEDMLKVVRADIADPRRPLFSALFLGPTGVGKTEIVRALARALH---- 114
Query: 202 TSADPCGRCTACLD-IDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLID 378
D G C ++ + Y L G + ++E + S G+ + L D
Sbjct: 115 --GDAEGFCRVDMNTLSQEHYAAALTGAPPGYVGAKEGTTLLEQDKLDGSPGRPGIVLFD 172
Query: 379 EVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQ 546
E+ S +ALL L+ V T + V + S ++R DE +
Sbjct: 173 ELEKASPEVVHALLNVLDNGLLRVASGERTYHFRNTLVFMTSNLCAHEIQRYDERR 228
>gi|5302773|emb|CAB46061.1| (Z97336) heat shock protein like
[Arabidopsis thaliana]
Length = 668
Score = 41.4 bits (95), Expect = 0.023
Identities = 37/133 (27%), Positives = 62/133 (45%), Gaps = 14/133 (10%)
Frame = +1
Query: 37 KRFAELVGQEHVVRALSNALESGRL--------HHAFLFTGTRGVGKTTIARIFAKSLNC 192
K +VGQ+ V+A++ A+ R+ +FLF G GVGKT +A+ A+ L
Sbjct: 531 KLHERVVGQDEAVKAVAAAILRSRVGLGRPQQPSGSFLFLGPTGVGKTELAKALAEQLFD 590
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNT------GVDDVREMIENAQYMPSRG 354
+ + +D+ Y D ++ G ++ ++ E + P
Sbjct: 591 SE----------NLLVRLDMSEYNDKFSVNKLIGAPPGYYIGHEEGGQLTEPVRRRP--- 637
Query: 355 KFKVYLIDEVHMLSKAAFNALLKTLEE 435
+ V L DEV FN LL+ LE+
Sbjct: 638 -YCVVLFDEVEKTHVTVFNTLLQVLED 663
>gi|2493734|sp|P74361|CLPB_SYNY3 CLPB PROTEIN
>gi|1653543|dbj|BAA18456| (D90914) ClpB [Synechocystis
sp.]
Length = 872
Score = 41.4 bits (95), Expect = 0.023
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQG 201
+ ++GQ+ V A++ A++ R +F+F G GVGKT +A+ AK+L +
Sbjct: 574 SRVIGQDEAVTAVAEAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAKNLFDTE- 632
Query: 202 TSADPCGRCTACLDIDVGRYIDLLEIDAASN-----TGVDDVREMIENAQYMPSRGKFKV 366
A + ID+ Y++ + G ++ ++ E + P + V
Sbjct: 633 ---------EALVRIDMSEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRP----YSV 679
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
L DE+ FN +L+ L++
Sbjct: 680 ILFDEIEKAHGDVFNVMLQILDD 702
>gi|3913513|sp|O64301|DPA4_BPR69 DNA POLYMERASE ACCESSORY PROTEIN 44
(PROTEIN GP44) (CLAMP LOADER LARGE SUBUNIT) >gi|3002806
(AF039565) DNA-dependent ATPase [Bacteriophage RB69]
Length = 320
Score = 41.0 bits (94), Expect = 0.031
Identities = 41/187 (21%), Positives = 72/187 (37%), Gaps = 2/187 (1%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
+L +K+RP E + + + + G+L H L + + G GKTT+A+ +N
Sbjct: 10 ILEQKYRPSSIDECILPAYDHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKALCNDINA 69
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVR-EMIENAQYMPSRGKFKVY 369
E + S+ +D VR + A+ + GK KV
Sbjct: 70 E-------------------------MMFVNGSDCKIDFVRGPLTAFARSVSMEGKPKVI 104
Query: 370 LIDEVHMLSKAAFNALLKT-LEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQ 546
+IDE A L+T +EE + ++ + + + SRC R EE
Sbjct: 105 VIDEFDRSGLAESQRHLRTFMEEFSSNCSIIITANNIDGIIEPLRSRCRVIEFGRPTEED 164
Query: 547 IQRQIAKIL 573
+ K++
Sbjct: 165 KISMMKKMI 173
>gi|79833|pir||JQ0405 hypothetical 119.5K protein (uvrA region) -
Micrococcus luteus
Length = 1106
Score = 41.0 bits (94), Expect = 0.031
Identities = 58/198 (29%), Positives = 78/198 (39%), Gaps = 17/198 (8%)
Frame = -3
Query: 1252 PLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQ 1073
P+E P A R+ Q G + P V P + PL H P D ++
Sbjct: 441 PVEGPDGGGARRRPARQGLQGGGDVPQP-VRP--RAPL---HHGLRGRHPLRDAQARGDR 494
Query: 1072 VGKRASAALPSQILHV-DSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQ--HLIHHLQTP 902
VG+R A +++H D VP V R P G + A+ RP+ + H H +
Sbjct: 495 VGRRPRAL---RVVHAGDPVPGVPRGPP-QPHGPERARG-----RPVHRGRHPPAHARGH 545
Query: 901 PKALVAVPESCAKLQPGP-----PTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEY 737
L A + GP P P PA +PR+ P LR P P
Sbjct: 546 GVLLGAAADGPGAADRGPGAQGDPGPAGVPAGRRPRVPQPRAAGRHPLRRRGPAHPPGHT 605
Query: 736 D---------QPYRACHVLHPRVTPLQHKQWPGPA 659
D +P RA H P P H+ P PA
Sbjct: 606 DRLRAGRRPLRPRRAVHRPAPAGQPPPHRDPPAPA 640
>gi|6458849|gb|AAF10687.1|AE001961_6 (AE001961) ATP-dependent Clp
protease, ATP-binding subunit ClpC [Deinococcus
radiodurans]
Length = 747
Score = 40.6 bits (93), Expect = 0.040
Identities = 36/129 (27%), Positives = 60/129 (45%), Gaps = 13/129 (10%)
Frame = +1
Query: 49 ELVGQEHVVRALSNALESGRL--------HHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
++ GQ V+AL++A+ R+ +FLF G GVGKT +A+ A++L
Sbjct: 450 QVYGQPDAVKALTSAMRRARVGLGGRTRVSASFLFVGPSGVGKTHLAKALARTL------ 503
Query: 205 SADPCGRCTACLDIDV-----GRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVY 369
G A + +D+ G I L G + + E + P F V
Sbjct: 504 ----FGSERALIRVDMSEFQEGHSISKLIGSPPGYVGFEQGGRLTEAVRRQP----FSVI 555
Query: 370 LIDEVHMLSKAAFNALLKTLEE 435
L+DE+ +N L+ L++
Sbjct: 556 LLDEIEKAHPDIYNTFLQVLDD 577
>gi|134780|sp|P14328|SP96_DICDI SPORE COAT PROTEIN SP96
>gi|84145|pir||S07638 spore coat protein SP96 precursor -
slime mold (Dictyostelium discoideum)
>gi|295736|emb|CAA34508| (X16491) spore coat protein sp96
[Dictyostelium discoideum]
Length = 600
Score = 40.6 bits (93), Expect = 0.040
Identities = 46/171 (26%), Positives = 76/171 (43%), Gaps = 5/171 (2%)
Frame = -2
Query: 1136 GASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTS 957
GA+ C I+ G+ ASI ST S + G + C Q T
Sbjct: 354 GAAKCCDVQPTCIKPSTIAGS-TIASIASTIASTGSTGATSPCSV--------AQCPTGY 404
Query: 956 GCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASN----TPPQSGENSAKVAITRNS 789
CV N A P P TT TS + + + + AS + SG ++A + + ++
Sbjct: 405 VCVAQNNVAVSLPRPTTTTGSTSDSSALGSTSESSASGSSAVSSSASGSSAASSSPSSSA 464
Query: 788 RSPSPAINAANIT-ST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSAA 624
S SP+ +AA+ + S+ S+ PS S ++ S + A + + S S + PS++
Sbjct: 465 ASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSS 520
>gi|3676826 (AF092449) mucin-like protein [Heterodera glycines]
Length = 412
Score = 40.6 bits (93), Expect = 0.040
Identities = 51/173 (29%), Positives = 78/173 (44%), Gaps = 17/173 (9%)
Frame = -2
Query: 1154 PTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWY 975
P AST PCPS I++ A + T A + A S P L K ++ P + I
Sbjct: 221 PPKPTPAAST--PCPSLPIKTPAPSNT-TAAPKPTPAASTPCPSLPVKTETPCPSLPIKT 277
Query: 974 QSCTTSGCVCSANKATFNPSPANTT------------EGTSCCT*ILCKASARASNTPPQ 831
+ +T+ S T P+PA TT T+ C + K A ++ TP
Sbjct: 278 PAPSTTTPCPSLPIKTPAPTPAATTPCPSLPVKTPAPSTTTPCPSLPVKTPAPSTTTPCP 337
Query: 830 SGENSAKVAITRNSRSPSPAINAANI----TST*VRSTVPSMSRTAPSRNTP-PA*AMAW 666
S K +++P+P+ N + T +T + TAP+ TP P A A
Sbjct: 338 SLPVKTKTPAPTATKTPAPSNNGTKVPSKTTPAPTTNTTKVPATTAPATKTPAPTNATAV 397
Query: 665 SSKDKPSRNE 636
+K KP + +
Sbjct: 398 PTK-KPQQQQ 406
>gi|530207 (L35272) heat shock protein [Glycine max]
Length = 911
Score = 40.2 bits (92), Expect = 0.053
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQG 201
+ +VGQ+ V A++ A+ R +FLF G GVGKT +A+ A+ L +
Sbjct: 569 SRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNE- 627
Query: 202 TSADPCGRCTACLDIDVGRYIDLLEID-----AASNTGVDDVREMIENAQYMPSRGKFKV 366
+ ID+ Y++ + G ++ ++ E + P + V
Sbjct: 628 ---------NQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRP----YSV 674
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
L DEV + FN LL+ L++
Sbjct: 675 VLFDEVEKAHTSVFNTLLQVLDD 697
>gi|3876064|emb|CAA96634.1| (Z72507) similar to Thrombospondin type 1
domain; cDNA EST EMBL:D34389 comes from this gene; cDNA
EST EMBL:D37437 comes from this gene; cDNA EST
EMBL:D64645 comes from this gene; cDNA EST EMBL:D65908
comes from this gene; cDN... >gi|3877441|emb|CAA96654.1|
(Z72510) similar to Thrombospondin type 1 domain; cDNA
EST EMBL:D34389 comes from this gene; cDNA EST
EMBL:D37437 comes from this gene; cDNA EST EMBL:D64645
comes from this gene; cDNA EST EMBL:D65908 comes from
this gene; cDN...
Length = 2761
Score = 40.2 bits (92), Expect = 0.053
Identities = 49/184 (26%), Positives = 83/184 (44%), Gaps = 4/184 (2%)
Frame = -2
Query: 1169 PCASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPL 990
P SL T+++ ++ S + S +TTG+ ++ S+ T L P
Sbjct: 261 PMISLTTESMQSTTSSSEI-STTLDSSSTTGSVSSTESVTSDSSDSTTPLDVSSS---PS 316
Query: 989 IAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQS---GEN 819
+ QS T S S++++ + SPA TTE + T + + + +S+ P S G +
Sbjct: 317 ESTESQSSTPSDA--SSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSD 374
Query: 818 SAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*A-MAWSSKDKPSR 642
S+ S S + + T ST PS S T PS ++ + + + SS D S
Sbjct: 375 SSSSESVTTEPSGSSTEPSGSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGST 434
Query: 641 NEPSAALE 618
+EPS + E
Sbjct: 435 SEPSMSSE 442
>gi|5689365|dbj|BAA83073.1| (AB024075) B120 [Homo sapiens]
Length = 1119
Score = 40.2 bits (92), Expect = 0.053
Identities = 82/285 (28%), Positives = 120/285 (41%), Gaps = 40/285 (14%)
Frame = -3
Query: 1447 HQ*SSHPKNQLRLYSLQLLAGHVPSLP--------QKKKAQTAQPT-------PTHSQAD 1313
+Q S HP+ Q YS Q + + P Q + Q++QP P H Q+
Sbjct: 89 NQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSP 148
Query: 1312 AVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVG 1133
A P T +P P PQ++S +Q Q ++ Y Q
Sbjct: 149 APYPSQQSTTQQHPQS--QPPYSQPQAQSPYQQQQPQQPAPSTL---SQQAAYPQPQSQQ 203
Query: 1132 HQHSAHAPQPKSDPVQ-PQEQVGKRASAALPSQIL--------------HVDSVPNVSRD 998
Q +A++ Q P + Q+ G +AS+A PS S+P++S
Sbjct: 204 SQQTAYSQQRFPPPQELSQDSFGSQASSA-PSMTSSKGGQEDMNLSLQSRPSSLPDLSGS 262
Query: 997 VH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSP--- 827
+ LP GT+ A P V I Q+ P P + L PG P PSP
Sbjct: 263 IDDLPMGTEGALSPGVSTSGISSS--QGEQSNPAQSPFSPHTSPHL-PGIRGPSPSPVGS 319
Query: 826 ----AKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPA 659
A+++ LSPA V M P P + D ++HP + Q G
Sbjct: 320 PASVAQSRSGPLSPAAVPGNQ---MPPRPPSGQSDS------IMHPSMNQSSIAQDRGGY 370
Query: 658 KTNHRVM---NRQQPWKAL*SPHRP 593
+ M + QP AL SP +P
Sbjct: 371 MQRNPQMPQYSSPQPGSAL-SPRQP 394
>gi|5174395|ref|NP_006006.1|| Brain protein 120
>gi|2588991|dbj|BAA23269| (AB001895) B120 [Homo sapiens]
Length = 1142
Score = 40.2 bits (92), Expect = 0.053
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 60/240 (25%)
Frame = -3
Query: 1447 HQ*SSHPKNQLRLYSLQLLAGHVPSLP--------QKKKAQTAQPT-------PTHSQAD 1313
+Q S HP+ Q YS Q + + P Q + Q++QP P H Q+
Sbjct: 89 NQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSP 148
Query: 1312 AVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVG 1133
A P T +P P PQ++S +Q Q ++ Y Q
Sbjct: 149 APYPSQQSTTQQHPQS--QPPYSQPQAQSPYQQQQPQQPAPSTL---SQQAAYPQPQSQQ 203
Query: 1132 HQHSAHAPQPKSDPVQ-PQEQVGKRASAALPSQIL--------------HVDSVPNVSRD 998
Q +A++ Q P + Q+ G +AS+A PS S+P++S
Sbjct: 204 SQQTAYSQQRFPPPQELSQDSFGSQASSA-PSMTSSKGGQEDMNLSLQSRPSSLPDLSGS 262
Query: 997 VH*LPSGTKVAQPPAVFV---------------RPIRQHLIHHL---QTPPKALVAVPES 872
+ LP GT+ A P V P H HL + P + V P S
Sbjct: 263 IDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPAS 322
Query: 871 CAKLQPGPPTPRPSPAKTQP---------RLLSPAIVDH---RHLRLMQPTSPQPEYDQP 728
A+ + GP +P P P ++ P++ + MQ S P+Y P
Sbjct: 323 VAQSRSGPLSPAAVPGNQMPPRPPSGSSDSIMHPSMNQSSIAQDRGYMQRNSQMPQYSSP 382
>gi|1173331|sp|P44631|RUVB_HAEIN HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|1074207|pir||B64061 Holliday junction DNA helicase
(ruvB) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573279 (U32716) Holliday junction DNA helicase
(ruvB) [Haemophilus influenzae Rd]
Length = 335
Score = 39.9 bits (91), Expect = 0.069
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLH-----HAFLFTGTRGVGKTTIARIFA 177
V+ R RPK A+ VGQ V + +++ +L H +F G G+GKTT+A I A
Sbjct: 18 VIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIF-GPPGLGKTTLANIVA 76
Query: 178 KSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK 357
+ T++ P +LE D+ M+ N +
Sbjct: 77 NEMGVNIRTTSGP-----------------VLE-------KAGDLAAMLTNLE------P 106
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEE 435
V IDE+H LS A L +E+
Sbjct: 107 HDVLFIDEIHRLSPAIEEVLYPAMED 132
>gi|1326353 (U58748) coded for by C. elegans cDNA yk43c5.3
[Caenorhabditis elegans]
Length = 718
Score = 39.9 bits (91), Expect = 0.069
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Frame = -3
Query: 1378 PSLPQKKKAQTAQPTPTHSQADAVLP------------LCCVITTTYPY-------ECHH 1256
P+ Q++ TAQ A AVL + +I T Y + HH
Sbjct: 171 PAQQQEQVLNTAQVLTKVMPASAVLDEQFVQPSEANNIVSSIINTQTSYGDEQQATQTHH 230
Query: 1255 LPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDP--VQP 1082
+ Q + AA + + S H HP Q + S + + + P V
Sbjct: 231 AQPQVQQHRPAASSSSSSSSSSASAEH----HPTHQVRVPSASSSIESNEQRVVPESVIV 286
Query: 1081 QEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTP 902
+E V + P Q+ + P V + V P + + PA P Q +H + T
Sbjct: 287 KEIVQTFETTPYPKQVAVETAAPFVPQPVRPAPQPVQPSFQPA----PAVQQQVHQVFTT 342
Query: 901 P-KALVAVPESC--------AKLQPGPPTPRP--SPA----KTQPR---LLSPAIVDHRH 776
P VPE+ A L P P P+P +PA + QP ++P +
Sbjct: 343 PIPHRPFVPETFVEQVEAGQANLVPAPVQPQPYVAPAHITQEIQPAPQPYVAPVAPVAQE 402
Query: 775 LRLMQPTSPQPEYDQPYRACHVL 707
+ +QP P P + P + HV+
Sbjct: 403 IHTIQPIQPAPIHPAPLQPAHVV 425
Score = 33.6 bits (75), Expect = 5.2
Identities = 47/205 (22%), Positives = 75/205 (35%), Gaps = 7/205 (3%)
Frame = -3
Query: 1216 QTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAALPSQ 1037
Q + N I +S I+ + +Q H Q + P +SA+
Sbjct: 201 QPSEANNIVSSIINTQTSYGDEQQATQTHHAQPQVQQHR--PAASSSSSSSSSSASAEHH 258
Query: 1036 ILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQ 857
H VP+ S + S + P +V V+ I + +T P E+ A
Sbjct: 259 PTHQVRVPSASSSIE---SNEQRVVPESVIVKEI----VQTFETTPYPKQVAVETAAPFV 311
Query: 856 PGPPTPRPSPAKT--QPRLLSPAIVDHRHLRLM-----QPTSPQPEYDQPYRACHVLHPR 698
P P P P P + QP +PA+ H +P P+ +Q L P
Sbjct: 312 PQPVRPAPQPVQPSFQP---APAVQQQVHQVFTTPIPHRPFVPETFVEQVEAGQANLVP- 367
Query: 697 VTPLQHKQWPGPAKTNHRVMNRQQPWKAL*SP 602
P+Q + + PA + QP+ A +P
Sbjct: 368 -APVQPQPYVAPAHITQEIQPAPQPYVAPVAP 398
>gi|727373 (U22817) RuvB Protein [Thermus aquaticus thermophilus]
Length = 324
Score = 39.9 bits (91), Expect = 0.069
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
RPK E +GQE + + L LE+ + L H LF G G+GKTT+A + A L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAHELGVN 65
Query: 196 QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 375
++ P A G D+ ++ N S + + I
Sbjct: 66 LRVTSGP----------------------AIEKPG--DLAAILAN-----SLEEGDILFI 96
Query: 376 DEVHMLSKAAFNALLKTLEE 435
DE+H LS+ A L +E+
Sbjct: 97 DEIHRLSRQAEEHLYPAMED 116
>gi|2498879|sp|Q56214|RUVB_THETH HOLLIDAY JUNCTION DNA HELICASE RUVB
Length = 324
Score = 39.9 bits (91), Expect = 0.069
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
RPK E +GQE + + L LE+ + L H LF G G+GKTT+A + A L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAHELGVN 65
Query: 196 QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 375
++ P A G D+ ++ N S + + I
Sbjct: 66 LRVTSGP----------------------AIEKPG--DLAAILAN-----SLEEGDILFI 96
Query: 376 DEVHMLSKAAFNALLKTLEE 435
DE+H LS+ A L +E+
Sbjct: 97 DEIHRLSRQAEEHLYPAMED 116
>gi|4586805|dbj|BAA76480.1| (AB015236) RuvB [Thermus thermophilus]
Length = 324
Score = 39.9 bits (91), Expect = 0.069
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
RPK E +GQE + + L LE+ + L H LF G G+GKTT+A + A L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAHELGVN 65
Query: 196 QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 375
++ P A G D+ ++ N S + + I
Sbjct: 66 LRVTSGP----------------------AIEKPG--DLAAILAN-----SLEEGDILFI 96
Query: 376 DEVHMLSKAAFNALLKTLEE 435
DE+H LS+ A L +E+
Sbjct: 97 DEIHRLSRQAEEHLYPAMED 116
>gi|893242 (M36941) C hordein [Hordeum vulgare]
Length = 347
Score = 39.9 bits (91), Expect = 0.069
Identities = 50/187 (26%), Positives = 72/187 (37%), Gaps = 2/187 (1%)
Frame = -3
Query: 1171 PHVHPYQQTPLVGHQHSAHAPQ-PKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDV 995
P + P Q PL Q PQ P P QP Q K+ P Q ++P
Sbjct: 153 PFLQPLQLXPLQAQQPFPLQPQLPFPQPQQPIGQQPKQPLLQQPQQ-----TIPQQ---- 203
Query: 994 H*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSP-AKT 818
P QP F + +Q L Q P + + P+ LQP P P+P P +
Sbjct: 204 ---PQQPFPLQPQQPFPQQPQQPLP---QQPQQIISQQPQQPFPLQPQQPFPQPQPFPQE 257
Query: 817 QPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKTNHRVM 638
QP+ P +QP P PE + ++ + PLQ +Q P + +
Sbjct: 258 QPQQAFP----------LQPQQPFPEESE-----QIITQQPFPLQPQQL-FPQQPQQPLP 301
Query: 637 NRQQPWKAL 611
QQP++ L
Sbjct: 302 QPQQPFRQL 310
>gi|6685950|sp|Q9X719|RUVB_DEIRA HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|4586354|dbj|BAA76366.1| (D84298) ruvB protein
[Deinococcus radiodurans]
Length = 311
Score = 39.9 bits (91), Expect = 0.069
Identities = 48/149 (32%), Positives = 62/149 (41%), Gaps = 7/149 (4%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
RPK E VGQE + L L++ R L H LF G G+GKTT+A I A L
Sbjct: 12 RPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLF-GPPGLGKTTLAHIIAYELGVN 70
Query: 196 QGTSADPCGRCTACLDIDVGRYI--DLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVY 369
++ P L I D+L ID G + P+ FK
Sbjct: 71 IRVTSGPAIEKPGDLAILTNSLEEGDVLFIDEIHRLG------RVAEEHLYPAMEDFK-- 122
Query: 370 LIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDP 477
+D V AA +T+E P P + ATT P
Sbjct: 123 -LDIVLGQGPAA-----RTIELPLPRFTLVGATTRP 152
>gi|2117310|emb|CAB09116.1| (Z95620) hypothetical protein
[Schizosaccharomyces pombe]
Length = 309
Score = 39.5 bits (90), Expect = 0.090
Identities = 28/110 (25%), Positives = 63/110 (56%), Gaps = 2/110 (1%)
Frame = -2
Query: 974 QSCTTSGCVCS--ANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAI 801
Q+ +S V S ++ ++ +PS ++TT TS + +S+ +S++ S +S+ +
Sbjct: 59 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 118
Query: 800 TRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPS 645
+ +S S S + ++++ +S+ S+VP S T+ S ++ + + + SS +PS
Sbjct: 119 SSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 170
>gi|2635199|emb|CAB14695| (Z99117) similar to hypothetical proteins
[Bacillus subtilis] >gi|2635217|emb|CAB14712| (Z99118)
similar to hypothetical proteins [Bacillus subtilis]
Length = 421
Score = 39.5 bits (90), Expect = 0.090
Identities = 47/198 (23%), Positives = 84/198 (41%), Gaps = 10/198 (5%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVV---RALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 186
LA + RP + +++GQ+H+V + + +++ L L+ G G+GKT+IA A S
Sbjct: 4 LAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILY-GPPGIGKTSIATAIAGST 62
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
+ I +++A N D E++ M + +
Sbjct: 63 S------------------------IAFRKLNAVINNKKD--MEIVAQEAKMSGQ---VI 93
Query: 367 YLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQ 546
++DEVH L K + LL LE + + + SR F L+ L E
Sbjct: 94 LILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPEL 153
Query: 547 IQRQIAKILTAE-------QITADDAAI 609
I++ + + L E ++ DD A+
Sbjct: 154 IKQALERALHDEHRGLGTYSVSIDDQAM 181
>gi|2498460|sp|Q50360|HMW3_MYCPN CYTADHERENCE HIGH MOLECULAR WEIGHT
PROTEIN 3 (CYTADHERENCE ACCESSORY PROTEIN 3) (ACCESSORY
ADHESIN PROTEIN 3) >gi|282607|pir||A43851 phase-variable
cytadherence accessory protein, HMW3 - Mycoplasma
pneumoniae (SGC3) >gi|2146090|pir||S73715 cytadherence
accessory protein HMW3 - Mycoplasma pneumoniae (SGC3)
(ATCC 29342) >gi|639785 (L38997) HMW3 [Mycoplasma
pneumoniae] >gi|1674070 (AE000037) Mycoplasma pneumoniae,
cytadherence accessory protein HMW3; similar to GenBank
Accession Number A43851, from M. pneumoniae [Mycoplasma
pneumoniae]
Length = 672
Score = 39.5 bits (90), Expect = 0.090
Identities = 32/124 (25%), Positives = 56/124 (44%), Gaps = 8/124 (6%)
Frame = -3
Query: 1108 QPKSDPV-----QPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFV 944
QP+ PV P+ ++ K +A + Q+ VP V + V P+ V P V
Sbjct: 353 QPQPTPVTVEVDSPKVEIPKVVTAKVALQVAQPTPVPAVPK-VAPQPTPAPVVVQPTAVV 411
Query: 943 RPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHL--- 773
+P+ ++ PK + P + P TP+ +P Q P +V +
Sbjct: 412 QPV-------VKAEPKVVTPTPAPQVVVTPQVATPKVTPKVVQTTPAVPPVVVQPEVVVQ 464
Query: 772 RLMQPTSPQPEY 737
+++PT P+PE+
Sbjct: 465 PIIRPTQPEPEW 476
>gi|6323002|ref|NP_013074.1|HSP104| 104 kDa heat shock protein;
Hsp104p >gi|1346246|sp|P31539|H104_YEAST HEAT SHOCK
PROTEIN 104 >gi|2118114|pir||S61476 heat shock protein
104 - yeast (Saccharomyces cerevisiae) >gi|557873
(M67479) heat shock protein 104 [Saccharomyces
cerevisiae] >gi|1360206|emb|CAA97475| (Z73131) ORF
YLL026w [Saccharomyces cerevisiae]
Length = 908
Score = 39.5 bits (90), Expect = 0.090
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Frame = +1
Query: 46 AELVGQEHVVRALSNA-------LESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
+E+VGQ ++A+SNA L + R +FLF G G GKT +A+ A L ++
Sbjct: 578 SEVVGQMDAIKAVSNAVRLSRSGLANPRQPASFLFLGLSGSGKTELAKKVAGFLFNDEDM 637
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEV 384
C ++ + L A G D+ + QY P + V L DEV
Sbjct: 638 MIR-----VDCSELSEKYAVSKLLGTTAGYVGYDEGGFLTNQLQYKP----YSVLLFDEV 688
Query: 385 HMLSKAAFNALLKTLEE 435
+L+ L++
Sbjct: 689 EKAHPDVLTVMLQMLDD 705
>gi|228154|prf||1717391A protein Hsp104 [Saccharomyces cerevisiae]
Length = 908
Score = 39.5 bits (90), Expect = 0.090
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Frame = +1
Query: 46 AELVGQEHVVRALSNA-------LESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGT 204
+E+VGQ ++A+SNA L + R +FLF G G GKT +A+ A L ++
Sbjct: 578 SEVVGQMDAIKAVSNAVRLSRSGLANPRQPASFLFLGLSGSGKTELAKKVAGFLFNDEDM 637
Query: 205 SADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLIDEV 384
C ++ + L A G D+ + QY P + V L DEV
Sbjct: 638 MIR-----VDCSELSEKYAVSKLLGTTAGYVGYDEGGFLTNQLQYKP----YSVLLFDEV 688
Query: 385 HMLSKAAFNALLKTLEE 435
+L+ L++
Sbjct: 689 EKAHPDVLTVMLQMLDD 705
>gi|15379|emb|CAA25341| (X00769) g44 protein [coliphage T4]
Length = 319
Score = 39.5 bits (90), Expect = 0.090
Identities = 66/325 (20%), Positives = 126/325 (38%), Gaps = 9/325 (2%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNC 192
+L +K+RP E + + G++ H L + + G GKTT+A+ +N
Sbjct: 10 ILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA 69
Query: 193 EQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN-AQYMPSRGKFKVY 369
D++ ++ S+ +D VR + N A G+ KV
Sbjct: 70 ------------------------DMMFVN-GSDCKIDFVRGPLTNFASAASFDGRQKVI 104
Query: 370 LIDEVHMLSKAAFNALLKT-LEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNL-KRLDEE 543
+IDE A L++ +E + ++ + + + SRC + DE+
Sbjct: 105 VIDEFDRSGLAESQRHLRSFMEAYSSNSSIIITANNIDGIIKPLQSRCRVITFGQPTDED 164
Query: 544 QIQRQIAKILTAEQITADDAAIIELSKAAXXXXXXXXXXXXQAIA-----YAGGVLREGA 708
+I+ I +I + I K + I + GVL G
Sbjct: 165 KIEMMKQMIRGLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDTYSSKGVLDAGI 224
Query: 709 VRDMLGTVDRTQVEVMLAALIAGDGDRLLRVIATLAEFSPDWGGVLEALAEALH-RIQVQ 885
+ L T DR ++ +L +L D +L A +++ D+ + LAE ++ + Q
Sbjct: 225 L--SLVTNDRGAIDDVLESLKNKDVKQLR---ALAPKYAADYSWFVGKLAEEIYSAVTPQ 279
Query: 886 QLVPSVVFAGDGLNVALLAEQTQPEVVQLWYQMA 987
++ G+ +A T+ + L+ Q+A
Sbjct: 280 SIIRMYEIVGENNQYHGIAANTELHLAYLFIQLA 313
>gi|3417427|emb|CAA20314.1| (AL031262) putative glucoamylase
[Schizosaccharomyces pombe]
Length = 344
Score = 39.5 bits (90), Expect = 0.090
Identities = 28/110 (25%), Positives = 63/110 (56%), Gaps = 2/110 (1%)
Frame = -2
Query: 974 QSCTTSGCVCS--ANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAI 801
Q+ +S V S ++ ++ +PS ++TT TS + +S+ +S++ S +S+ +
Sbjct: 94 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 153
Query: 800 TRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPS 645
+ +S S S + ++++ +S+ S+VP S T+ S ++ + + + SS +PS
Sbjct: 154 SSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 205
>gi|3122842|sp|O32055|RUVB_BACSU HOLLIDAY JUNCTION DNA HELICASE RUVB
Length = 334
Score = 39.5 bits (90), Expect = 0.090
Identities = 37/141 (26%), Positives = 58/141 (40%), Gaps = 5/141 (3%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFA 177
V+ + RP+ A+ +GQ V L +++ + L H L+ G G+GKTT+A I A
Sbjct: 16 VIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLY-GPPGLGKTTLASIVA 74
Query: 178 KSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK 357
+ E T++ P + R DL I A G
Sbjct: 75 NEMGVELRTTSGPA----------IERPGDLAAILTALEPG------------------- 105
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEE 435
V IDE+H L ++ L +E+
Sbjct: 106 -DVLFIDEIHRLHRSIEEVLYPAMED 130
>gi|6007542|gb|AAF00951.1|AF183139_1 (AF183139) trucnated type 2 EBNA2
[Cercopithecine herpesvirus 15]
Length = 464
Score = 39.1 bits (89), Expect = 0.12
Identities = 66/237 (27%), Positives = 87/237 (35%), Gaps = 29/237 (12%)
Frame = -3
Query: 1378 PSLPQKKKAQTAQPT---------PTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKS 1226
P P+++ A T +P P + + CV H L PQ+
Sbjct: 73 PPHPERRDAWTQEPNILDRNPLGGPQGGPLAGAIRMLCVSNLIVRQSRGHRGLIDPQAPQ 132
Query: 1225 AARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAAL 1046
A TG + P +HP TPL H P P P E +
Sbjct: 133 QA--TGPLLPVSG-----PTMHP---TPL--HHAPPRPDPPPHTPPPPLEIITLSPDPTT 180
Query: 1045 PSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQ--HLIHHLQTP---PKALVAV 881
PS P + H LP T PP P+ H +HH P P + V
Sbjct: 181 PS----TPPAP-IPSPPHPLPPPTAHPAPPKP-TPPLASPPHPVHHPPVPHPTPPQPITV 234
Query: 880 PESCAKL---QPGPPTPRPSPAKTQPRLLSPAIVDHRHLR--LMQPTSPQPEYDQPYRA- 719
P + +PGPP P PS + PR +P +V R +M PT P P
Sbjct: 235 PLITLERTPWRPGPPPPGPSHLQPTPRPGAPRVVTQPVCRPGVMVPTLALPPLSAPLPPP 294
Query: 718 ---------CHVLHPRVTPLQHKQWP 668
H+ P PL WP
Sbjct: 295 AASNPVPGFVHLPPPSPPPLGPVWWP 320
>gi|138350|sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR
>gi|73738|pir||VGBEX1 glycoprotein X precursor - equine
herpesvirus 1 (strain Ab4p) >gi|330862 (M86664) membrane
glycoprotein [Equine herpesvirus 1]
Length = 797
Score = 39.1 bits (89), Expect = 0.12
Identities = 67/280 (23%), Positives = 108/280 (37%), Gaps = 31/280 (11%)
Frame = -2
Query: 1529 ETKAA*AANCLEGPLNSMRSTNASHCPTS--VIFPSKEPTPT---------LFTSVVSGT 1383
ET + ++ G S +TN+S PT+ S PT T +S + T
Sbjct: 27 ETTTSSSSTSGSGQSTSSGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAAT 86
Query: 1382 RSIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRS 1203
S APS ST S T T S+ T + ++P T V + A +
Sbjct: 87 SSSAPSTASST-TSIPTST-STETTTTTPTASTTTPTTTTAAPTTAATTTAVTTAASTSA 144
Query: 1202 E--------------------RDWDIVYPLAPCASLPTDAISGASTLCPCPSAEIRSGAT 1083
E + AS TD + A+T +A + AT
Sbjct: 145 ETTTATATATSTPTTTTPTSTTTTTATTTVPTTASTTTDTTTAATTTAATTTAATTTAAT 204
Query: 1082 TGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANT 903
T T + +T + T + + A + TT+ +A T + +
Sbjct: 205 T-TAATTTAATTTAATTTAATTSSATTAATTTAATTTAATTTAATTTAATTTAATTTGSP 263
Query: 902 TEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAINAANITST*VRSTVP 723
T G++ T + ++ T S A T ++ +P+ A +A T+ ST P
Sbjct: 264 TSGSTSTTGASTSTPSASTATSATPTSTSTSAAATTSTPTPTSAATSAESTTEAPTST-P 322
Query: 722 SMSRTAPSRNT 690
+ T PS T
Sbjct: 323 TTDTTTPSEAT 333
>gi|2565065 (U80745) CTG7a [Homo sapiens]
Length = 349
Score = 39.1 bits (89), Expect = 0.12
Identities = 58/213 (27%), Positives = 84/213 (39%), Gaps = 17/213 (7%)
Frame = -3
Query: 1450 QHQ*SSHPKNQLRLYSLQLLAGHVPSLP-QKKKAQTAQPTPTHSQADAVLPLCCVITTTY 1274
QH H +NQ ++ Q + L Q+++ Q Q QA P
Sbjct: 34 QHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALEAQP--------- 84
Query: 1273 PYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSD 1094
P++ PQ + + + H P P QQ P+ +Q S PQ ++
Sbjct: 85 --PIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQP-QQPPVAQNQPSQLPPQSQTQ 141
Query: 1093 PVQPQEQVGKRASAALPSQILH------------VDSVPNVSRDVH*LPSGTKVAQPPAV 950
P+ Q Q ALP Q+L+ V P V V + + AQ A
Sbjct: 142 PLVSQAQ-------ALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQA-AQ 193
Query: 949 FVRP---IRQHLIHHLQTP-PKALVAVPESCAKLQPGPPTPRPSPAKTQP 812
V P + Q + L +P P V P+S PP P+PSP QP
Sbjct: 194 MVAPGVQVSQSSLPMLSSPSPGQQVQTPQSM------PPPPQPSPQPGQP 237
>gi|330130 (M17921) latency associated transcript (LAT) ORF-2 [Herpes
simplex virus type 1]
Length = 305
Score = 39.1 bits (89), Expect = 0.12
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = -3
Query: 1354 AQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH 1175
AQ PTPTH + A PL T T+P+ H PL + + + H
Sbjct: 22 AQHGTPTPTHPHSHAP-PLPRTPTPTHPHS-HAPPLPRTPTPTHPHSHAPPLPRTPTPTH 79
Query: 1174 *PHVH--PYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKR 1061
PH H P +TP H HS P P++ + P Q GKR
Sbjct: 80 -PHSHAPPLPRTPTPTHPHSHAPPLPRTPAIHP-TQTGKR 117
>gi|2134123|pir||I51618 nucleolar phosphoprotein - African clawed frog
>gi|895921|emb|CAA61368| (X88927) nucleolar
phosphoprotein [Xenopus laevis] >gi|1585694|prf||2201454A
nucleolar phosphoprotein Nopp180 [Xenopus laevis]
Length = 990
Score = 39.1 bits (89), Expect = 0.12
Identities = 85/326 (26%), Positives = 132/326 (40%), Gaps = 49/326 (15%)
Frame = -2
Query: 1607 KSATERVDCRYSNSGSNAKHRTLFS*ETKAA*AANCLEGPLNSMRSTNASHCPTSVIFPS 1428
KSA + S+S S++ T K A + S TN PTS P+
Sbjct: 378 KSAPAKKASSSSDSDSSSNEETTTKPAAKTTPAKSAATP--TSKTPTNGKATPTSKT-PA 434
Query: 1427 KEPTPTLFT----SVVSGTRSIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDL-PIRM 1263
K TP T S S + + EE +T +A T S T+ N P
Sbjct: 435 KPGTPKTSTAKKDSSSSDSSDSSSDEETTTKPAAKTTPAKSAATPTSKTPTNSKATPTSK 494
Query: 1262 SSPPIGGTAIEVCSKADWRSERDWDI--------------VYPLAPCASLPTDAISGAST 1125
+P GT +K D S D P P A T A A T
Sbjct: 495 KTPAKPGTPKTSAAKKDSSSSDSSDSSSDEKKTPAKRAAKTTPAKPAAKT-TPAKPAAKT 553
Query: 1124 LCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVC 945
P+A+ G T +++S ++ S+ + K S +P + T+ V
Sbjct: 554 TPAKPAAKSTPGKQVPTKKESS---SSDSSDSSSEDEKKSSAKPAVKTTPGKATSKPVVA 610
Query: 944 S----ANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPS 777
S A KA+ + ++ E T+ T L K S PP+ E+S+ + +S +
Sbjct: 611 SKPVPAKKASSSSDSDSSEEETTKTTKPLTKLSPAVKTLPPKKAESSSDSSSDSDSEKKT 670
Query: 776 PAINAANITST*VRSTVPSMSRTA-------------------PSRNTPPA*AMAWS--- 663
++T V + P+ ++ + P+ +P A A A
Sbjct: 671 KPAKPPAKSATPVNTKAPAQNKASKASCSDSDSSSEEEGKSKQPTGKSPAAKATAPPKKN 730
Query: 662 ----SKDKPSRNEPS 630
+KDKPS + S
Sbjct: 731 PVAVNKDKPSSSSSS 745
>gi|100210|pir||S25299 extensin precursor (clone Tom L-4) - tomato
>gi|170444 (M76671) extensin (class II) [Lycopersicon
esculentum]
Length = 322
Score = 39.1 bits (89), Expect = 0.12
Identities = 38/148 (25%), Positives = 58/148 (38%), Gaps = 6/148 (4%)
Frame = -3
Query: 1171 PHVHPYQQTPLVGHQHSAHAPQPKSDPVQ-----PQEQVGKRASAALPSQILHVDSVPNV 1007
P PY+++P H+ S P K PV P V S + P ++ P V
Sbjct: 58 PPPAPYKKSPTYQHR-SPPPPTHKISPVTHHSPPPPSPVYDHPSPSSPPPPVYYSPPPPV 116
Query: 1006 SRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQ-PGPPTPRPS 830
+ P T + P P +H PP P++ + P P+P P+
Sbjct: 117 YHE----PPPTYKPKSPPPPPTPSYEHPKTPSPLPPTPSYEHPKTPPSHEHPKTPSP-PT 171
Query: 829 PAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQP 728
P+ P+ SP + H + P P P Y+ P
Sbjct: 172 PSYEHPKTPSPPTPSYEHPKTPSPPPPTPSYEHP 205
Score = 34.0 bits (76), Expect = 3.9
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Frame = -3
Query: 961 PPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQP---GPPTP---RPSPAKTQPRLLS 800
PP + P+ HH PP + P + P PP P P P
Sbjct: 76 PPTHKISPVT----HHSPPPPSPVYDHPSPSSPPPPVYYSPPPPVYHEPPPTYKPKSPPP 131
Query: 799 PAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRV----TP-LQHKQWPGP 662
P + H + P P P Y+ P HP+ TP +H + P P
Sbjct: 132 PPTPSYEHPKTPSPLPPTPSYEHPKTPPSHEHPKTPSPPTPSYEHPKTPSP 182
>gi|548613|sp|P35820|PSC_DROME POSTERIOR SEX COMBS PROTEIN
>gi|103177|pir||S17983 gene posterior sex combs protein -
fruit fly (Drosophila melanogaster)
>gi|8358|emb|CAA41965| (X59275) posterior sex combs
[Drosophila melanogaster]
Length = 1603
Score = 38.7 bits (88), Expect = 0.15
Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 10/210 (4%)
Frame = -3
Query: 1252 PLEAPQSKSAARQTGDQNGIGTSYIH*PH--VHPYQQTPLVGHQHSAHAPQPKSDPVQPQ 1079
P + S+A Q+G NGI + I+ P+ QQ + +S + P S +
Sbjct: 1063 PAQGGGGSSSATQSGGNNGIVNNNIYMPNEDAPEKQQVKVKSLLNSCNINIPSSLSITIS 1122
Query: 1078 EQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPP 899
G +S H V N V K+ P V+ ++ Q+PP
Sbjct: 1123 RDNGDSSSPNNGQHPKHKSPVNNYIEIV-------KLPDQPQDQVQAAKE--AQKRQSPP 1173
Query: 898 KALVAVPESCAKLQPGPPTPR-PSPAKTQPRLLSPAIVDHRHLRLMQPTSPQ----PEYD 734
A+ AKL P PP+ PSP R+ P + + P+SP+ P+
Sbjct: 1174 AAVPG--HLAAKLPPPPPSKAIPSPQHLVSRMTPPQL--PKVATPPPPSSPRVITPPKTS 1229
Query: 733 QPYRACHV--LHPRVTPLQ-HKQWPGPAKTNHRVMNRQQP 623
P A V L P +TP Q K+ P P K M P
Sbjct: 1230 PPANAAKVTPLKPVLTPTQVDKKTPSPEKRTAAQMGSHSP 1269
Score = 32.8 bits (73), Expect = 8.9
Identities = 31/119 (26%), Positives = 43/119 (36%)
Frame = -3
Query: 1633 PATGSTPGSNRPQNVSIVDIQTPDLTLNTGRCSHERQKRHEQPIA*KDHLTQCARPTQAI 1454
P G P P N I ++ PD + + + E QKR P A HL P
Sbjct: 1131 PNNGQHPKHKSPVNNYIEIVKLPDQPQDQVQAAKEAQKRQSPPAAVPGHLAAKLPPPPPS 1190
Query: 1453 AQHQ*SSHPKNQLRLYSLQLLAGHVPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTT 1277
H +++ L +A P P + T T + A V PL V+T T
Sbjct: 1191 KAIPSPQHLVSRMTPPQLPKVA--TPPPPSSPRVITPPKTSPPANAAKVTPLKPVLTPT 1247
>gi|2114321|dbj|BAA20037| (D88733) membrane glycoprotein [Equine
herpesvirus 1]
Length = 866
Score = 38.7 bits (88), Expect = 0.15
Identities = 71/327 (21%), Positives = 116/327 (34%), Gaps = 14/327 (4%)
Frame = -2
Query: 1604 SATERVDCRYSNSGSNAKHRTLFS*ETKAA*AANCLEGPLNSMRSTNASHCPTSVIFPSK 1425
+ TE S SGS ++ ++ N P S +T++S PTS S
Sbjct: 24 TTTETTTSSSSTSGSG---------QSTSSGTTNSSSSPTTSPPTTSSSP-PTSTHTSSP 73
Query: 1424 EPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIG 1245
T T +S + T S APS ST S T T S+ T + ++P
Sbjct: 74 SSTSTQSSSTAA-TSSSAPSTASSTT-SIPTST-STETTTTTPTASTTTPTTTTAAPTTA 130
Query: 1244 GTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAI--------------SGASTLCPCPS 1107
T V + A + + A S PT + AST +
Sbjct: 131 ATTTAVTTAASTAASTSAETTTATATATSTPTTTTPTSTTTTTATTTVPTTASTTTDTTT 190
Query: 1106 AEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKAT 927
A + ATT + +TA + A + A + TT+ S+
Sbjct: 191 AATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTSSATTA 250
Query: 926 FNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAINAANITS 747
+ A TT T+ A+ A+ T + + A T + + + A A T+
Sbjct: 251 ATTTAATTTAATTTAA-TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT 309
Query: 746 T*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSAA 624
+ + + T + T + +S S + PSA+
Sbjct: 310 AATTTAATTTAATTTAATTTGSPTSGSTSTTGASTSTPSAS 350
>gi|5802483|gb|AAD51697.1|AF172332_1 (AF172332) major outer envelope
glycoprotein gp350 [Human herpesvirus 4]
Length = 886
Score = 38.7 bits (88), Expect = 0.15
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = -2
Query: 965 TTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNT----PPQSGENSAKVAIT 798
T++G S T +P+PA TT G S T + S R + T P + SA T
Sbjct: 462 TSTGPTVSTADVT-SPTPAGTTSGASPVT---PRPSPRDNGTESKAPDMTSPTSAVTTPT 517
Query: 797 RNSRSPSPAIN--AANITST*VRSTVPSMSRTAPSRN 693
N+ SP+PA+ N TS + T P+ + T P+ N
Sbjct: 518 PNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPN 554
Score = 35.2 bits (79), Expect = 1.8
Identities = 38/153 (24%), Positives = 64/153 (40%)
Frame = -2
Query: 1157 LPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIW 978
+PT+ + ST +A++ S GT AS + S G +K
Sbjct: 454 VPTNLTAPTSTGPTVSTADVTSPTPAGTTSGASPVTPRPSPRDNGTESKAPD-------- 505
Query: 977 YQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAIT 798
+ TS AT +P+PA TT + + L K S ++ T P T
Sbjct: 506 -MTSPTSAVTTPTPNAT-SPTPAVTTPTPNATSPTLGKTSPTSAVTTP-----------T 552
Query: 797 RNSRSPSPAINAANITST*VRSTVPSMSRTAPS 699
N+ SP+PA +T+ +T+P++ +T+P+
Sbjct: 553 PNATSPTPA-----VTTPTPNATIPTLGKTSPT 580
>gi|4103470|gb|AAD01782.1| (AF023421) ClpE [Lactococcus lactis]
Length = 748
Score = 38.7 bits (88), Expect = 0.15
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLHHA--------FLFTGTRGVGKTTIARIFAKSLNCEQG 201
A ++GQ+ V +S A+ R+ FLF G GVGKT +A+ AK L
Sbjct: 444 AHVIGQDEAVDKISKAIRRSRVGLGKPNRPIGFFLFVGPTGVGKTELAKQLAKEL----- 498
Query: 202 TSADPCGRCTACLDIDVGRYIDLLEI-----DAASNTGVDDVREMIENAQYMPSRGKFKV 366
G + + D+ Y++ + G ++ ++ E + R + +
Sbjct: 499 -----FGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVR----RNPYSL 549
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
L+DE+ + L+ LE+
Sbjct: 550 ILLDEIEKAHPDVMHMFLQILED 572
>gi|3874559|emb|CAB02793.1| (Z81042) predicted using Genefinder;
Similarity to Yeast hypothetical 50.5 KD protein
(TR:G755784); cDNA EST EMBL:T01580 comes from this gene;
cDNA EST EMBL:D71028 comes from this gene; cDNA EST
EMBL:D71749 comes from this ge...
Length = 458
Score = 38.7 bits (88), Expect = 0.15
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Frame = +1
Query: 310 VREMIEN--AQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEP-PPHVKFL------- 459
V E IE+ A+ MP V IDEVHML F L + LE P P V F
Sbjct: 302 VNEYIESGVAELMPG-----VLFIDEVHMLDVECFTYLYRALESPMAPVVVFATNRGTTT 356
Query: 460 ---LATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSK 624
L P +P +L R + + +EE I++ + AE + ++ A L++
Sbjct: 357 VRGLGDKAPHGIPPEMLDRLMIIPTMKYNEEDIRKILVHRTEAENVQFEEKAFDLLTR 414
>gi|2285875|dbj|BAA21652| (D85682) synaptojanin [Bos taurus]
Length = 1212
Score = 38.7 bits (88), Expect = 0.15
Identities = 28/130 (21%), Positives = 48/130 (36%)
Frame = -3
Query: 982 SGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLL 803
S + +A+PP + P+ + + + P +L P PGPP + SP T P
Sbjct: 1034 SSSALARPPVLHPGPVPASHLPYRRGPVPSLPVRPSRAPSRTPGPPASQSSPVDTLPATQ 1093
Query: 802 SPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKTNHRVMNRQQP 623
+ L +P P+P + P P ++ P P+ R++
Sbjct: 1094 LQQKDSSQTLEPKRPPPPRP-----------VAPPARPAPPQRPPPPSGARSPAPARERV 1142
Query: 622 WKAL*SPHRP 593
W + RP
Sbjct: 1143 WSTRKAQERP 1152
>gi|6473880|dbj|BAA87194.1| (AB027890) Hypothetical protein
[Schizosaccharomyces pombe]
Length = 210
Score = 38.7 bits (88), Expect = 0.15
Identities = 24/100 (24%), Positives = 58/100 (58%)
Frame = -2
Query: 944 SANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAIN 765
+++ ++ +PS ++TT TS + +S+ +S++ S +S+ + + +S S S + +
Sbjct: 1 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 60
Query: 764 AANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPS 645
+++ +S+ S+VP S T+ S ++ + + + SS +PS
Sbjct: 61 SSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 100
>gi|4584086|emb|CAB40552.1| (AJ132828) p210 protein [Spermatozopsis
similis]
Length = 609
Score = 38.7 bits (88), Expect = 0.15
Identities = 38/154 (24%), Positives = 51/154 (32%), Gaps = 2/154 (1%)
Frame = -3
Query: 1120 AHAPQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVR 941
AHAP P P +Q + S A P PP+ +
Sbjct: 3 AHAPPPLPSPQVLAQQAARALSMAPPP--------------------------PPSALQQ 36
Query: 940 PIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQ-PRLLSPAIVDHRHLRLM 764
Q PP+ P+ + P PPT P PA+ Q P+ + A +
Sbjct: 37 AASQPAPPAYAPPPQPASYAPQPAQQQAPAPPTYAPPPAQQQAPQAPAYAPPAPAQQQAP 96
Query: 763 QPTSPQPEYDQPYRACHVLHPRVTPLQHKQW-PGPA 659
P +PQ P P P Q +QW P PA
Sbjct: 97 APQAPQAYAPAPVAPAPQAPPPQQPPQQQQWAPAPA 132
Score = 34.8 bits (78), Expect = 2.3
Identities = 59/210 (28%), Positives = 67/210 (31%), Gaps = 9/210 (4%)
Frame = -3
Query: 1429 PKNQLRLYSLQLLAGHVPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLP 1250
P L S LAG PS Q AQ + A A P P P
Sbjct: 134 PPGAALLQSAGALAGPAPSAGQ---VAAAQAVLSRQAAPAAAPQAPQAPQFAP------P 184
Query: 1249 LEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPL-------VGHQHSAHAPQPKSDP 1091
+APQ A +Q Q + P P Q P Q A APQ P
Sbjct: 185 PQAPQFAPAPQQPQPQQQQPAA----PQFAPPPQAPAPQPQFAPAPQQQQALAPQFAPAP 240
Query: 1090 VQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHL 911
QPQ+Q A A P P + P V Q PA P
Sbjct: 241 QQPQQQ---PAFAPAPQAPAPQAPAPQFAPQQPLAPQFAPVPQAPAYAPAP--------- 288
Query: 910 QTPPKALVAVPESCAKLQPGPPTPRP--SPAKTQPRLLS 800
P A P + QP PP P PA T +LS
Sbjct: 289 -QQPSYAPASPPAAGSPQPRPPAGSPVRPPAPTTESVLS 326
>gi|6466400|gb|AAF12982.1|AF022186_105 (AF022186) unknown; Clp
protease ATP binding subunit [Cyanidium caldarium]
Length = 854
Score = 38.7 bits (88), Expect = 0.15
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Frame = +1
Query: 46 AELVGQEHVVRALSNALESGRLH--------HAFLFTGTRGVGKTTIARIFAKSLNCEQG 201
+ +VGQ V A+S A+ R+ +F+F+G GVGKT + + A
Sbjct: 542 SRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYF----- 596
Query: 202 TSADPCGRCTACLDIDVGRYIDLLEIDAASNT-----GVDDVREMIENAQYMPSRGKFKV 366
G A + +D+ Y++ + + G ++ ++ E + P + V
Sbjct: 597 -----FGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRKRP----YTV 647
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
L DE+ FN LL+ LE+
Sbjct: 648 VLFDEIEKAHPDVFNLLLQILED 670
>gi|423830|pir||A45690 transactivator EBNA-2 - Herpesvirus papio HVP
>gi|306316|gb|AAA79034.1| (AF200364) EBNA-2 [Herpesvirus
papio]
Length = 530
Score = 38.3 bits (87), Expect = 0.20
Identities = 44/143 (30%), Positives = 55/143 (37%), Gaps = 16/143 (11%)
Frame = -3
Query: 1171 PHVHPYQQ----------TPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAALPSQILHVD 1022
PH HP+Q PL G S P P P P K +PS H+
Sbjct: 206 PHSHPFQSEPKQTPPKPTLPLPGPPVSPPPPTPSIQPT-PHPTPPK---PTIPSSGPHIT 261
Query: 1021 SVPNVSRDVH*LPSGTKVAQPP------AVFVRPIRQHLIHHLQTPPKALVAVPESCAKL 860
P V G+ V+QPP + P+ T + L S A +
Sbjct: 262 LTP-VPLSQPASTQGSNVSQPPPQHKQILIITTPL---ATSQTPTTKQILPKTTRSSASM 317
Query: 859 QPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP 743
P P P +P P SP IV R PTSP+P
Sbjct: 318 DPLPLPPLSTPPPPAPSTPSPGIVRDR------PTSPRP 350
Score = 34.4 bits (77), Expect = 3.0
Identities = 30/79 (37%), Positives = 38/79 (47%), Gaps = 5/79 (6%)
Frame = -3
Query: 910 QTPPKALVAVPESCAKLQPGPPTP--RPSPAKTQPRLLSPAIVDHRHLR---LMQPTSPQ 746
QTPPK + +P + P PPTP +P+P T P+ P+ H L L QP S Q
Sbjct: 217 QTPPKPTLPLPG--PPVSPPPPTPSIQPTPHPTPPKPTIPSSGPHITLTPVPLSQPASTQ 274
Query: 745 PEYDQPYRACHVLHPRVTPLQHKQ 674
+V P P QHKQ
Sbjct: 275 --------GSNVSQP---PPQHKQ 287
>gi|3122844|sp|P70828|RUVB_BORBU HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|1620917|emb|CAA70097.1| (Y08885) B subunit of RuvAB
helicase [Borrelia burgdorferi] >gi|2687900 (AE001116)
Holliday junction DNA helicase (ruvB) [Borrelia
burgdorferi]
Length = 347
Score = 38.3 bits (87), Expect = 0.20
Identities = 42/159 (26%), Positives = 70/159 (43%), Gaps = 6/159 (3%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
RPK F + GQ +V LS + + + L H FL +G G+GKTT+A I A +N
Sbjct: 26 RPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFL-SGPPGLGKTTLASIIAFEMNAS 84
Query: 196 -QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYL 372
+ TSA + + I G +D S +D++ + P +
Sbjct: 85 IKITSAPAFDKPKDIIGILTG-------LDEKSVLFIDEIHRL------RPIIEEMLCIA 131
Query: 373 IDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSR 507
+++ + A +T+ P P + ATT P K+ + +R
Sbjct: 132 MEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYAR 176
>gi|6324372|ref|NP_014442.1|AGA1| anchorage subunit of a-agglutinin;
Aga1p >gi|416592|sp|P32323|AGA1_YEAST A-AGGLUTININ
ATTACHMENT SUBUNIT PRECURSOR >gi|101170|pir||A41258
a-agglutinin core protein AGA1 - yeast (Saccharomyces
cerevisiae) >gi|170964 (M60590) a-agglutinin core subunit
[Saccharomyces cerevisiae] >gi|1302552|emb|CAA96325|
(Z71659) ORF YNR044w [Saccharomyces cerevisiae]
Length = 725
Score = 37.9 bits (86), Expect = 0.27
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Frame = -2
Query: 1163 ASLPTDAISGAST----LCP-CPSAEIRSGATTGTGRKASIR-----STAISNPTRGLGA 1014
++LPT +S S +CP C + I S + GT S S +I +P +
Sbjct: 115 STLPTTTLSVTSKFTSYICPTCHTTAISSLSEVGTTTVVSSSAIEPSSASIISPVTSTLS 174
Query: 1013 KCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPP 834
S P TTS S + ++ + SP++T+ +S + S +S+T
Sbjct: 175 STTSSNPT--------TTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTST 226
Query: 833 QSGENSAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPS 699
S ++T S S + ++ TS+ ST PS + T+ S
Sbjct: 227 SPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSS 271
Score = 37.1 bits (84), Expect = 0.46
Identities = 87/392 (22%), Positives = 146/392 (37%), Gaps = 4/392 (1%)
Frame = -2
Query: 1484 NSMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHT--DTFSS*C 1311
N + +T S S + T TL+T+ T S + + E S S T FS+
Sbjct: 41 NGVVTTTVSPALVSTSTIVQAGTTTLYTTWCPLTVSTSSAAEISPSISYATTLSRFSTLT 100
Query: 1310 GATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISGA 1131
+T V +++ P SS + T + V SK Y C + ++S
Sbjct: 101 LSTEVC-SHEACP---SSSTLPTTTLSVTSKFT---------SYICPTCHTTAISSLSEV 147
Query: 1130 STLCPCPSAEIR-SGATTGTGRKASIRSTAISNPTR-GLGAKCKS*RPLIAIWYQSCTTS 957
T S+ I S A+ + +++ ST SNPT L + S + T+S
Sbjct: 148 GTTTVVSSSAIEPSSASIISPVTSTLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSS 207
Query: 956 GCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPS 777
+++ +T S + +T +S T +++ +S + QS S + + S SPS
Sbjct: 208 SSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQS---STSTSSSSTSTSPS 264
Query: 776 PAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSAALEXXXXXXX 597
+++ TST S S S T+ S ++S+ PS S L
Sbjct: 265 STSTSSSSTSTSPSSKSTSASSTSTS---------SYSTSTSPSLTSSSPTLASTSPSST 315
Query: 596 XXXXXXXVRILAI*RWICSSSKRFRLNCKQRDNTVTGNF*GSVVARRNFTCGGGSSSVFS 417
++ I SSS L ++ SV S
Sbjct: 316 SISSTFTDSTSSLGSSIASSSTSVSL----------------------YSPSTPVYSVPS 353
Query: 416 SALNAALESICTSSIR*TLNLPLEGIYCAFSIISRT 309
++ N A S+ +S++ T++ Y S IS T
Sbjct: 354 TSSNVATPSMTSSTVETTVSSQSSSEYITKSSISTT 389
>gi|1706520|sp|P54258|DRPL_RAT ATROPHIN-1
(DENTATORUBRAL-PALLIDOLUYSIAN ATROPHY PROTEIN)
>gi|1049102 (U31777) atrophin-1 [Rattus norvegicus]
Length = 1183
Score = 37.9 bits (86), Expect = 0.27
Identities = 46/179 (25%), Positives = 61/179 (33%), Gaps = 3/179 (1%)
Frame = -3
Query: 1252 PLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQ 1073
P P+ +AA G +G HP TP+ A P P P
Sbjct: 232 PPMGPKGGAAASSVGPPSG--------GKQHPPPTTPIPISSSGASGAPPAKPPNTPVG- 282
Query: 1072 VGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKA 893
G SA P+ HV PN+ P A PP + +PI HL +
Sbjct: 283 AGNLPSAPPPATFPHV--TPNLPPPPALRPLNNASASPPGMGAQPIPGHL--------PS 332
Query: 892 LVAVPESCAKLQPGP---PTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYR 722
A+ + + L PGP PT PSP P ++P P PY
Sbjct: 333 PHAMGQGMSGLPPGPEKGPTLAPSPHPLPP---------------ASSSAPGPPMRYPYS 377
Query: 721 AC 716
+C
Sbjct: 378 SC 379
>gi|1705806|sp|P54197|CHI2_COCIM ENDOCHITINASE 2 PRECURSOR >gi|1200192
(L41662) chitinase [Coccidioides immitis]
>gi|1586545|prf||2204242B chitinase [Coccidioides
immitis]
Length = 860
Score = 37.9 bits (86), Expect = 0.27
Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 2/268 (0%)
Frame = -2
Query: 1490 PLNSMRSTNA-SHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS* 1314
P ++M++T+ S +V S+EP T ++ + T + +E + T + S+
Sbjct: 387 PSSTMQTTSTGSTSIETVTTRSQEPPSTTISTRSASTEPVTTRSQEPPSTTISTRSAST- 445
Query: 1313 CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISG 1134
+ + R PP T I S + S D S PT ++
Sbjct: 446 ----------ETVTTRSQEPP--STTISTWSASTETSTSSQDSPSTTISTKSAPTGTVTT 493
Query: 1133 ASTLCPCPSAEIRSGAT-TGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTS 957
S P + RS T T T S S +I+ TR A+ S R + T S
Sbjct: 494 RSQDLPSTTISTRSPETETETATTKSQGSPSITLSTRSSSAETVSTRSQHSSSTTISTKS 553
Query: 956 GCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPS 777
+ + + S +T S T I ++ + + + S + TR+ SPS
Sbjct: 554 APTETGTTSEHSTSMPVSTRSASTETVITRSQNSDSQSMTVSTRSPSTESITTRSQGSPS 613
Query: 776 PAINAANITST*VRSTVPSMSRTAPSRNTP 687
+ ++ + + +PS + T TP
Sbjct: 614 ETFSTKSVPVDTISTELPSQTPTTIITGTP 643
>gi|1209103 (U44091) atrophin-1 related protein [Rattus norvegicus]
Length = 1006
Score = 37.9 bits (86), Expect = 0.27
Identities = 62/251 (24%), Positives = 78/251 (30%), Gaps = 2/251 (0%)
Frame = -3
Query: 1399 QLLAGHVPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAA 1220
Q+L P+L A +A T P TT P PQ A
Sbjct: 178 QMLQTQPPALQAPSGAASAPSTAPPGTTQLPTPGPTPSATTVP----------PQGSPAT 227
Query: 1219 RQTGDQNGIGTSYIH*PHVHPY-QQTPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAAL- 1046
Q +Q + P H QQTP + H P P P+QP + SA
Sbjct: 228 SQPPNQTQSTVA----PAAHTLIQQTPTL---HPPRLPSPHP-PLQPMTAPPSQNSAQPH 279
Query: 1045 PSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCA 866
P LH P P ++ P+ QH PP+ P+S
Sbjct: 280 PQPSLHGQGPPG----------------PHSLQTGPLLQH-----PGPPQPFGLTPQS-- 316
Query: 865 KLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPL 686
G PSPA P L+ QP QP P H+ P TP+
Sbjct: 317 --SQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPI 374
Query: 685 QHKQWPGPAKTNH 647
Q P P H
Sbjct: 375 --PQLPAPQAHKH 385
>gi|2133239|pir||JC4566 chitinase (EC 3.2.1.14) 2 - Coccidioides
immitis
Length = 860
Score = 37.9 bits (86), Expect = 0.27
Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 2/268 (0%)
Frame = -2
Query: 1490 PLNSMRSTNA-SHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS* 1314
P ++M++T+ S +V S+EP T ++ + T + +E + T + S+
Sbjct: 387 PSSTMQTTSTGSTSIETVTTRSQEPPSTTISTRSASTEPVTTRSQEPPSTTISTRSAST- 445
Query: 1313 CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISG 1134
+ + R PP T I S + S D S PT ++
Sbjct: 446 ----------ETVTTRSQEPP--STTISTWSASTETSTSSQDSPSTTISTKSAPTGTVTT 493
Query: 1133 ASTLCPCPSAEIRSGAT-TGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTS 957
S P + RS T T T S S +I+ TR A+ S R + T S
Sbjct: 494 RSQDLPSTTISTRSPETETETATTKSQGSPSITLSTRSSSAETVSTRSQHSSSTTISTKS 553
Query: 956 GCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPS 777
+ + + S +T S T I ++ + + + S + TR+ SPS
Sbjct: 554 APTETGTTSEHSTSMPVSTRSASTETVITRSQNSDSQSMTVSTRSPSTESITTRSQGSPS 613
Query: 776 PAINAANITST*VRSTVPSMSRTAPSRNTP 687
+ ++ + + +PS + T TP
Sbjct: 614 ETFSTKSVPVDTISTELPSQTPTTIITGTP 643
>gi|310893 (L06323) membrane protein [Theileria parva]
Length = 480
Score = 37.9 bits (86), Expect = 0.27
Identities = 67/282 (23%), Positives = 95/282 (32%), Gaps = 1/282 (0%)
Frame = -3
Query: 1657 QSSLRGPDPATGSTPGSNRPQNVSIVDIQTPDLTLNTGRCSHERQKRHEQPIA*KDHLTQ 1478
Q S G + G+ S +V+ VD ++ D T S Q+ QP +D Q
Sbjct: 30 QQSGGGSNNNEGNNNDSTGSSDVTQVDTESND----TSSSSETSQQGKPQPDQPQDQPDQ 85
Query: 1477 CARPTQAIAQHQ*SSHPKNQLRLYSLQLLAGHVPSLPQKKKAQTAQPTPTHSQADAVLPL 1298
+PTQ Q ++ S + P + Q QPT +
Sbjct: 86 HQQPTQGDTSGQQGPDTPQPIQEPSGPVQPDQTGQGPVEPVDQQQQPTQGDTSGQQ---- 141
Query: 1297 CCVITTTYPYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSA 1118
P + + S+ QT DQ+G P YQQ P+
Sbjct: 142 -----GQQPQDQPVQEQDGQDSQGTPEQTPDQSGQQPGPDT-PDQPVYQQQPVQQPSGQQ 195
Query: 1117 HAPQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRP 938
PQP+ P QP + V ++ P P+ D H P T AQP
Sbjct: 196 QQPQPRPQP-QPDQPVDQQQEPPTPEDQPSGPDSPD-QPDQHHQP--TPAAQP------- 244
Query: 937 IRQHLIHHLQTPPKALVAVPESCAKLQPGP-PTPRPSPAKTQP 812
QT P+ PE + QP P P P+P P + P
Sbjct: 245 ---------QTQPQ-----PEPQPEPQPEPQPEPQPEPVQEPP 273
Score = 33.6 bits (75), Expect = 5.2
Identities = 41/167 (24%), Positives = 55/167 (32%), Gaps = 3/167 (1%)
Frame = -3
Query: 1153 QQTPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGT 974
QQ P G QP+ PVQ Q+ + + P + D G
Sbjct: 129 QQQPTQGDTSGQQGQQPQDQPVQEQDGQDSQGT-------------PEQTPDQSGQQPGP 175
Query: 973 KVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPA 794
P +P++Q Q P+ P+ Q PPTP P+ SP
Sbjct: 176 DTPDQPVYQQQPVQQPSGQQQQPQPRP-QPQPDQPVDQQQEPPTPEDQPSGPD----SPD 230
Query: 793 IVDHRH--LRLMQP-TSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKT 653
D H QP T PQPE + P+ P+Q P T
Sbjct: 231 QPDQHHQPTPAAQPQTQPQPEPQPEPQPEPQPEPQPEPVQEPPEQTPEHT 280
>gi|995557|emb|CAA61623| (X89453) DRPLA [Rattus norvegicus]
Length = 1182
Score = 37.9 bits (86), Expect = 0.27
Identities = 46/179 (25%), Positives = 61/179 (33%), Gaps = 3/179 (1%)
Frame = -3
Query: 1252 PLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQ 1073
P P+ +AA G +G HP TP+ A P P P
Sbjct: 232 PPMGPKGGAAASSVGPPSG--------GKQHPPPTTPIPISSSGASGAPPAKPPNTPVG- 282
Query: 1072 VGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKA 893
G SA P+ HV PN+ P A PP + +PI HL +
Sbjct: 283 AGNLPSAPPPATFPHV--TPNLPPPPALRPLNNASASPPGMGAQPIPGHL--------PS 332
Query: 892 LVAVPESCAKLQPGP---PTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYR 722
A+ + + L PGP PT PSP P ++P P PY
Sbjct: 333 PHAMGQGMSGLPPGPEKGPTLAPSPHPLPP---------------ASSSAPGPPMRYPYS 377
Query: 721 AC 716
+C
Sbjct: 378 SC 379
>gi|2129234|pir||E64477 replication factor C homolog - Methanococcus
jannaschii >gi|1592072 (U67583) activator 1 (replication
factor C), 35 KD subunit [Methanococcus jannaschii]
Length = 1847
Score = 37.9 bits (86), Expect = 0.27
Identities = 18/43 (41%), Positives = 27/43 (61%)
Frame = +1
Query: 25 KWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGK 153
K+RPK ++VGQ+ +V+ L +E + H LF+G GVGK
Sbjct: 12 KYRPKTLDDIVGQDEIVKRLKKYVEKKSMPH-LLFSGPPGVGK 53
>gi|5802485|gb|AAD51698.1|AF172333_1 (AF172333) major outer envelope
glycoprotein gp350 [Human herpesvirus 4]
Length = 851
Score = 37.9 bits (86), Expect = 0.27
Identities = 50/171 (29%), Positives = 73/171 (42%), Gaps = 8/171 (4%)
Frame = -2
Query: 1205 SERDWDIVYP---LAPCASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRST--AI 1041
S R +DI AP + T + A+T I S A T ++ +T A
Sbjct: 385 SNRTFDITVSGLGTAPMTLIITRTATNATTTT---HKVIFSKAPESTTTSPTLNTTGFAA 441
Query: 1040 SNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILC-K 864
N T GL + L A +T V +A+ + P+PA TT G S T +
Sbjct: 442 PNTTTGLPSSTHVPTNLTA----PASTGPTVSTADVTS--PTPAGTTSGASPVTPSPSPR 495
Query: 863 ASARASNTPPQSGENSAKVAITRNSRSPSPAIN--AANITST*VRSTVPSMSRTAPSRN 693
+ S P + SA T N+ SP+PA+ N TS + T P+ + T P+ N
Sbjct: 496 DNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPN 554
>gi|1718187|sp|Q07284|VGP3_EBVA8 ENVELOPE GLYCOPROTEIN GP340
(MEMBRANE ANTIGEN) (MA) >gi|321372|pir||S29605
glycoprotein 350/220 - human herpesvirus 4
>gi|59164|emb|CAA47986| (X67776) glycoprotein 350/220
[Human herpesvirus 4] >gi|291520 (L07922) glycoprotein
340 [Epstein-Barr virus] >gi|306293 (L07923)
glycoprotein 340 [Epstein-Barr virus]
Length = 886
Score = 37.5 bits (85), Expect = 0.35
Identities = 26/77 (33%), Positives = 38/77 (48%), Gaps = 3/77 (3%)
Frame = -2
Query: 923 NPSPANTTEGTSCCT*ILC-KASARASNTPPQSGENSAKVAITRNSRSPSPAIN--AANI 753
+P+PA TT G S T + + S P + SA T N+ SP+PA+ N
Sbjct: 475 SPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNA 534
Query: 752 TST*VRSTVPSMSRTAPSRN 693
TS + T P+ + T P+ N
Sbjct: 535 TSPTLGKTSPTSAVTTPTPN 554
Score = 37.5 bits (85), Expect = 0.35
Identities = 39/153 (25%), Positives = 66/153 (42%)
Frame = -2
Query: 1157 LPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIW 978
+PT+ + AST +A++ S GT AS + + S G +K
Sbjct: 454 VPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPD-------- 505
Query: 977 YQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAIT 798
+ TS AT +P+PA TT + + L K S ++ T P T
Sbjct: 506 -MTSPTSAVTTPTPNAT-SPTPAVTTPTPNATSPTLGKTSPTSAVTTP-----------T 552
Query: 797 RNSRSPSPAINAANITST*VRSTVPSMSRTAPS 699
N+ SP+PA +T+ +T+P++ +T+P+
Sbjct: 553 PNATSPTPA-----VTTPTPNATIPTLGKTSPT 580
>gi|1170299|sp|P41809|HKR1_YEAST HANSENULA MRAKII KILLER
TOXIN-RESISTANT PROTEIN 1 PRECURSOR >gi|545660|bbs|144411
(S69101) Hkr1p [Saccharomyces cerevisiae, YNN295,
Peptide, 1802 aa] [Saccharomyces cerevisiae]
Length = 1802
Score = 37.5 bits (85), Expect = 0.35
Identities = 63/267 (23%), Positives = 103/267 (37%), Gaps = 15/267 (5%)
Frame = -2
Query: 1481 SMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGAT 1302
++ ST S SV+ PS + VS T + +PS + S +T + S+ +
Sbjct: 457 AVSSTYTSSPSASVVVPSAYASSPSVPVAVSSTYTSSPSAPAAIS-STYTSSPSAPVAVS 515
Query: 1301 AVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDWDIVY-------PLAPCASLPT-- 1149
+ ++ P +SS + V + + S P AP A T
Sbjct: 516 STYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYT 575
Query: 1148 ------DAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLI 987
AIS T P + S T+ A+I ST S+P+ +
Sbjct: 576 SSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVS-------- 627
Query: 986 AIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKV 807
+ T+S +A +T+ SP+ +S T SA A+ + + S V
Sbjct: 628 ----STYTSSPSAPAAISSTYTSSPSVPVAVSSTYT---SSPSAPAAISSTYTSSPSVPV 680
Query: 806 AITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA 681
A++ S A A + T T S ++S T S + PA
Sbjct: 681 AVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPA 722
>gi|2498873|sp|Q49425|RUVB_MYCGE HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|1361546|pir||G64239 Holliday junction DNA helicase
ruvB homolog - Mycoplasma genitalium (SGC3) >gi|3844943
(U39717) Holliday junction DNA helicase (ruvB)
[Mycoplasma genitalium]
Length = 307
Score = 37.1 bits (84), Expect = 0.46
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +1
Query: 34 PKRFAELVGQEHVVRALSNALESGRLHHA----FLFTGTRGVGKTTIARIFAKSL 186
P F E VG++ ++ + ++++ +L+ L G GVGKTT+AR+ A L
Sbjct: 8 PNTFDEFVGKQEIISQIQLSIKASKLNKTQLDHILLYGPPGVGKTTLARLIANEL 62
>gi|2497281|sp|P72689|IF2_SYNY3 TRANSLATION INITIATION FACTOR IF-2
>gi|1651769|dbj|BAA16696| (D90900) initiation factor IF-2
[Synechocystis sp.]
Length = 1001
Score = 37.1 bits (84), Expect = 0.46
Identities = 33/144 (22%), Positives = 51/144 (34%), Gaps = 2/144 (1%)
Frame = -3
Query: 1159 PYQQTPLVGH--QHSAHAPQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*L 986
P QQ L H Q + P P P+ ++ + P + S P + +
Sbjct: 78 PKQQKILAIHHKQEKSGGPSPARPTPPPRPKLQAPKAPTPPQPPVAKASAPKIQKQEEPA 137
Query: 985 PSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRL 806
K PP +P+ + LQ+PP +P PPTP A PRL
Sbjct: 138 QEAPKSVAPPT---QPLAPPPVPSLQSPPS------------KPAPPTPPAKKAAPAPRL 182
Query: 805 LSPAIVDHRHLRLMQPTSPQPEYDQP 728
P + P +P+ ++P
Sbjct: 183 AGPPGRTASPNKTAVPAPAKPKVNRP 208
>gi|6677857|ref|NP_033151.1|| spinocerebellar ataxia 2 homolog
>gi|3005020 (AF041472) ataxin-2 [Mus musculus]
Length = 1285
Score = 37.1 bits (84), Expect = 0.46
Identities = 62/240 (25%), Positives = 96/240 (39%), Gaps = 40/240 (16%)
Frame = -3
Query: 1429 PKNQLRLYSLQLLAGHVPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLP 1250
P NQ + Y AG VP++PQ+++ Q Q T H + A P ++ T Y ++
Sbjct: 961 PVNQAKTYR----AGKVPNMPQQRQDQHHQSTMMHPASAAGPP---IVATPPAYSTQYVA 1013
Query: 1249 LEAPQSKSAARQTGDQNGIGTSYIH*PHV---HPYQQTPLVGHQHSAHAPQPKSDP---- 1091
Q + H PH HP+ +P++ AP + P
Sbjct: 1014 YSPQQFPNQPLVQ-----------HVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVS 1062
Query: 1090 ----------------VQPQEQVGKRAS---------AALPSQILHVDSVPNVSRDVH*L 986
P+ K S +L Q H ++ + H
Sbjct: 1063 SSAAQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNAALH-PHTPHPQ 1121
Query: 985 PSGTKVAQPPAVF--VRPIRQHLIHHLQTPPKAL-VAVPES-----CAKLQPGPPTPRPS 830
PS T Q + P + HH +AL +A P+ A L P PP+ P+
Sbjct: 1122 PSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPA 1181
Query: 829 PAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHV 710
P+ PA + + + P+ QP Y P HV
Sbjct: 1182 SNTQSPQSSFPAA--QQTVFTIHPSHVQPAYTTPPHMAHV 1219
>gi|2394451 (AF024496) contains similarity to Plasmodium falciparum
glycophorin-binding protein homolog 2 (GB:X69769)
[Caenorhabditis elegans]
Length = 1459
Score = 37.1 bits (84), Expect = 0.46
Identities = 70/313 (22%), Positives = 126/313 (39%), Gaps = 15/313 (4%)
Frame = -2
Query: 1574 SNSGSNAKHRTLFS*ETKAA*AANCLEGPLNSMRSTNASHCPTSVIFPSKEPTPTLFT-- 1401
S + N++ +T T + + GP ++ ++ +S P + + + T T+
Sbjct: 706 SETPCNSETQTSDGTSTMTVSSDSTTAGPSSTATNSASSETPCNSETQTSDGTFTMTVPN 765
Query: 1400 -SVVSGTRS-IAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEV 1227
S +G S + S T C++ T T G + + +ND SS + E
Sbjct: 766 DSTTAGPSSTVTNSASSETPCNSETQTSD---GTSTMTVSNDSTTAGPSSTATNSASSET 822
Query: 1226 -CSKADWRSERDWDIVYPLAPCASLPTD-AISGASTLCPCPSAEIRSGAT---------T 1080
C+ S+ + + P + P+ A + AS+ PC S S T T
Sbjct: 823 PCNSETQTSDGTFTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDST 882
Query: 1079 GTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTT 900
G ++ ++A S + + + S TT+G +A + + +P N+
Sbjct: 883 TAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDS-TTAGPSSTATNSASSETPCNSE 941
Query: 899 EGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAINAANITST*VRSTVPS 720
TS T + + + P + NSA NS + ++ TST TVP+
Sbjct: 942 TQTSDGTSTMTVPNDSTTAGPSSTATNSASSETPCNSET-----QTSDGTST---MTVPN 993
Query: 719 MSRTAPSRNTPPA*AMAWSSKDKPSRNE 636
S TA +T A +S + P +E
Sbjct: 994 DSTTAGPSST----ATNSASSETPCNSE 1017
Score = 36.4 bits (82), Expect = 0.78
Identities = 60/296 (20%), Positives = 118/296 (39%), Gaps = 15/296 (5%)
Frame = -2
Query: 1574 SNSGSNAKHRTLFS*ETKAA*AANCLEGPLNSMRSTNASHCPTSVIFPSKEPTPTLFTSV 1395
S + N++ +T T + + GP ++ ++ +S P + + + T T+ S
Sbjct: 440 SETPCNSETQTSDGTSTMTVSSDSTTPGPSSTATNSASSETPCNSETQTSDGTFTMTVSS 499
Query: 1394 VSGTR----SIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEV 1227
S T ++ S T C++ T T +T + ++ P S+ ++
Sbjct: 500 DSTTAGPSSTVTNSASSETPCNSETQTSDG--TSTMTVSSDSTTPGPSSTATNSASSETP 557
Query: 1226 CSKADWRSERDWDIVYPLAPCASLPTD-AISGASTLCPCPSAEIRSGAT---------TG 1077
C+ S+ + P + P+ A + AS+ PC S S T T
Sbjct: 558 CNSETQTSDGTSTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTT 617
Query: 1076 TGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTE 897
G +++ ++A S + + + S TT+G +A + + +P N+
Sbjct: 618 AGPSSTVTNSASSETPCNSETQTSDGTSTMTVSSDS-TTAGPSSTATNSASSETPCNSET 676
Query: 896 GTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRS-PSPAINAANITST*VRSTVPS 720
TS T + +S + P + NSA NS + S + ++S + S
Sbjct: 677 QTSDGTSTMTVSSDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVSSDSTTAGPSS 736
Query: 719 MSRTAPSRNTP 687
+ + S TP
Sbjct: 737 TATNSASSETP 747
Score = 34.8 bits (78), Expect = 2.3
Identities = 63/268 (23%), Positives = 108/268 (39%), Gaps = 15/268 (5%)
Frame = -2
Query: 1493 GPLNSMRSTNASHCPTSVIFPSKEPTPTLFTS---VVSGTRSIAPSEEES-TDCSAHTDT 1326
GP +++ ++ +S P + + + T T+ S +G S A + S T C++ T T
Sbjct: 771 GPSSTVTNSASSETPCNSETQTSDGTSTMTVSNDSTTAGPSSTATNSASSETPCNSETQT 830
Query: 1325 FSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEV-CSKADWRSERDWDIVYPLAPCASLPT 1149
G + ND SS + E C+ S+ + P + P+
Sbjct: 831 SD---GTFTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPS 887
Query: 1148 D-AISGASTLCPCPSAEIRSGAT---------TGTGRKASIRSTAISNPTRGLGAKCKS* 999
A + AS+ PC S S T T G ++ ++A S +
Sbjct: 888 STATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSDG 947
Query: 998 RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGEN 819
+ + S TT+G +A + + +P N+ TS T + + + P + N
Sbjct: 948 TSTMTVPNDS-TTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTATN 1006
Query: 818 SAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNT 690
SA NS + ++ TST TVP+ S TA +T
Sbjct: 1007 SASSETPCNSET-----QTSDGTST---MTVPNDSTTAGPSST 1041
Score = 34.8 bits (78), Expect = 2.3
Identities = 65/286 (22%), Positives = 116/286 (39%), Gaps = 15/286 (5%)
Frame = -2
Query: 1493 GPLNSMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTR----SIAPSEEESTDCSAHTDT 1326
GP +++ ++ +S P + + + T T+ S S T ++ S T C++ T T
Sbjct: 1143 GPSSTVTNSASSETPCNSETQTSDGTFTMTVSSDSTTAGPSSTVTNSASSETPCNSETQT 1202
Query: 1325 FSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEV-CSKADWRSERDWDIVYPLAPCASLPT 1149
G + ++D SS + E C+ S+ + P + P+
Sbjct: 1203 SD---GTFTMTVSSDSTTAGPSSTVTNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPS 1259
Query: 1148 DAISG-ASTLCPCPSAEIRSGAT---------TGTGRKASIRSTAISNPTRGLGAKCKS* 999
++ AS+ PC S S T T G +++ ++A S +
Sbjct: 1260 STVTNSASSETPCNSETQTSDGTSTMTVSSDSTTAGPSSTVTNSASSETPCNSETQTSDG 1319
Query: 998 RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGEN 819
+ + S TT+G +A + + +P N+ TS T + +S + P + N
Sbjct: 1320 TSTMTVSSDS-TTAGQSSTATNSASSETPCNSETQTSDGTSTMTVSSDSTTAGPSSTVTN 1378
Query: 818 SAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRN 639
SA NS + ++ TST TV S S TA +T A +S + P +
Sbjct: 1379 SASSETPCNSET-----QTSDGTST---MTVSSDSTTAGQSST----ATNSASSETPCNS 1426
Query: 638 E 636
E
Sbjct: 1427 E 1427
Score = 34.4 bits (77), Expect = 3.0
Identities = 65/287 (22%), Positives = 116/287 (39%), Gaps = 15/287 (5%)
Frame = -2
Query: 1496 EGPLNSMRSTNASHCPTSVIFPSKEPTPTLFTS---VVSGTRSIAPSEEES-TDCSAHTD 1329
EGP +++ ++ +S P + + + T + S +G S A + S T C++ T
Sbjct: 10 EGPSSTVTNSASSETPCNSETQTSDGTSPMTVSSDSTTAGPSSTATNSASSETPCNSETQ 69
Query: 1328 TFSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEV-CSKADWRSERDWDIVYPLAPCASLP 1152
T G + + ND SS + E C+ S+ + P + P
Sbjct: 70 TSD---GTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQTSDGTSTMTVPNDSTTAGP 126
Query: 1151 TDAISGA-STLCPCPSAEIRSGAT---------TGTGRKASIRSTAISNPTRGLGAKCKS 1002
+ ++ + S+ PC S S T T G ++ ++A S +
Sbjct: 127 SSTVTNSESSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSD 186
Query: 1001 *RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGE 822
+ + S TT+G +A + + +P N+ TS T + + + P +
Sbjct: 187 GTSTMTVPNDS-TTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTAT 245
Query: 821 NSAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSR 642
NSA NS + ++ TST TVP+ S TA +T A +S + P
Sbjct: 246 NSASSETPCNSET-----QTSDGTST---MTVPNDSTTAGPSST----ATNSASSETPCN 293
Query: 641 NE 636
+E
Sbjct: 294 SE 295
Score = 34.0 bits (76), Expect = 3.9
Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 15/286 (5%)
Frame = -2
Query: 1493 GPLNSMRSTNASHCPTSVIFPSKEPTPTLFT---SVVSGTRS-IAPSEEESTDCSAHTDT 1326
GP ++ ++ +S P + + + T T+ S +G S + S T C++ T T
Sbjct: 49 GPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQT 108
Query: 1325 FSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEV-CSKADWRSERDWDIVYPLAPCASLPT 1149
G + + ND SS + E C+ S+ + P + P+
Sbjct: 109 SD---GTSTMTVPNDSTTAGPSSTVTNSESSETPCNSETQTSDGTSTMTVPNDSTTAGPS 165
Query: 1148 D-AISGASTLCPCPSAEIRSGAT---------TGTGRKASIRSTAISNPTRGLGAKCKS* 999
A + AS+ PC S S T T G ++ ++A S +
Sbjct: 166 STATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSDG 225
Query: 998 RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGEN 819
+ + S TT+G +A + + +P N+ TS T + + + P + N
Sbjct: 226 TSTMTVPNDS-TTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTATN 284
Query: 818 SAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRN 639
SA NS + ++ TST TVP+ S TA +T A +S + P +
Sbjct: 285 SASSETPCNSET-----QTSDGTST---MTVPNDSTTAGPSST----ATNSASSETPCNS 332
Query: 638 E 636
E
Sbjct: 333 E 333
Score = 34.0 bits (76), Expect = 3.9
Identities = 67/296 (22%), Positives = 122/296 (40%), Gaps = 32/296 (10%)
Frame = -2
Query: 1634 PSNRVNPWVKSATERVDCRYSNSGSNAKHRTLFS*ETKAA*AANCLEGPLNSMRSTNASH 1455
PS+ V SA+ C S+ S ++ A GP ++ ++ +S
Sbjct: 772 PSSTVT---NSASSETPCNSETQTSDGTSTMTVSNDSTTA-------GPSSTATNSASSE 821
Query: 1454 CPTSVIFPSKEPTPTLFT---SVVSGTRSIAPSEEES-TDCSAHTDTFSS*CGATAVLRN 1287
P + + + T T+ S +G S A + S T C++ T T G + +
Sbjct: 822 TPCNSETQTSDGTFTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSD---GTSTMTVP 878
Query: 1286 NDDLPIRMSSPPIGGTAIEV-CSKADWRSERDWDIVYPLAPCASLPTD-AISGASTLCPC 1113
ND SS + E C+ S+ + P + P+ A + AS+ PC
Sbjct: 879 NDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTATNSASSETPC 938
Query: 1112 PSAEIRSGAT---------TGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTT 960
S S T T G ++ ++A S + + + S TT
Sbjct: 939 NSETQTSDGTSTMTVPNDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDS-TT 997
Query: 959 SGCVCSANKATFNPSPANT----TEGTSCCT*ILCKASARAS-------------NTPPQ 831
+G +A + + +P N+ ++GTS T +A S N+ Q
Sbjct: 998 AGPSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQ 1057
Query: 830 SGENSAKVAITRNSRSPSPAINAANITS 747
+ + ++ + ++ +S +P P+ A N S
Sbjct: 1058 TSDGTSTMTVSSDSTTPGPSSTATNSAS 1085
>gi|6012073|gb|AAB82017.2| (U54556) microfilarial sheath protein
SHP3 [Litomosoides sigmodontis]
Length = 354
Score = 37.1 bits (84), Expect = 0.46
Identities = 46/251 (18%), Positives = 93/251 (36%), Gaps = 2/251 (0%)
Frame = -2
Query: 992 LIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCC--T*ILCKASARASNTPPQSGEN 819
+I ++ C T +++ T +PA TT T+ T K + ++T ++ +
Sbjct: 9 VIVAFFLLCVTPRASQASSSTTSTTTPAKTTSTTTTAKTTSKTTKTTTVKTSTTTKTTTS 68
Query: 818 SAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRN 639
S + T+ + S + + ST +T P+ S+T+ + T A SS KP+ +
Sbjct: 69 STTSSTTKPTTSKTSSTTKTTTASTTSSTTKPTTSKTSSTTKTTT--ASTTSSTTKPTTS 126
Query: 638 EPSAALEXXXXXXXXXXXXXXVRILAI*RWICSSSKRFRLNCKQRDNTVTGNF*GSVVAR 459
+ S+ + +SS K T + S +
Sbjct: 127 KTSSTTKTTTAST-------------------TSSTTKPTTSKTSSTTKSSTSKTSGTTK 167
Query: 458 RNFTCGGGSSSVFSSALNAALESICTSSIR*TLNLPLEGIYCAFSIISRTSSTPVLEAAS 279
+ S++ ++ S+ T+++ P + T+ST + S
Sbjct: 168 SSTPATSASTTTVTTKSTTPATSVSTTTVTTKSTTPATSVSTTSGTTKSTTSTTSVSTTS 227
Query: 278 ISSKSI*RPTSIS 240
++KS TS+S
Sbjct: 228 GTTKSTTSTTSVS 240
>gi|3426118|emb|CAA06531| (AJ005425) MEF2D protein [Rattus norvegicus]
Length = 507
Score = 37.1 bits (84), Expect = 0.46
Identities = 55/224 (24%), Positives = 83/224 (36%), Gaps = 7/224 (3%)
Frame = -3
Query: 1273 PYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSD 1094
P H+ L AP K R Q G G + H++ Q+ + HS P
Sbjct: 253 PPPTHNTQLGAPSRKPDLRVITSQGGKGLMH----HLNNAQRLGVSQSTHSLTTP----- 303
Query: 1093 PVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHH 914
V A+ +L SQ L S+P + LPS + P + +
Sbjct: 304 -------VVSVATPSLLSQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTA 356
Query: 913 LQTPPKALVAVPESCAKLQPGPPTPRP-SPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEY 737
Q P + P + QP PP P+P P + QP L+ ++ + + P SP P
Sbjct: 357 WQQPQQPQQPQPPQPPQSQPQPPQPQPQQPPQQQPHLVPVSLSN------LIPGSPLPHV 410
Query: 736 DQPYRACHVLHPRVT----PLQHKQWPGPAKTNHRVM--NRQQPWKAL*SP 602
HP ++ P+ + PA V R +P + L SP
Sbjct: 411 GAALTV--TTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGEGLSSP 459
>gi|134124|sp|P08577|RUVB_ECOLI HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|72914|pir||BVECVB DNA-binding protein ruvB -
Escherichia coli >gi|42903|emb|CAA30120| (X07091) ruvB
gene product (AA 1 - 336) [Escherichia coli] >gi|147783
(M21298) ruvB protein [Escherichia coli]
>gi|1736507|dbj|BAA15671| (D90829) Holliday junction DNA
helicase RuvB. [Escherichia coli] >gi|1788167 (AE000280)
Holliday junction helicase subunit A; branch migration;
repair [Escherichia coli]
Length = 336
Score = 36.7 bits (83), Expect = 0.60
Identities = 38/141 (26%), Positives = 56/141 (38%), Gaps = 5/141 (3%)
Frame = +1
Query: 13 VLARKWRPKRFAELVGQEHVVRALSNALESGRLH-----HAFLFTGTRGVGKTTIARIFA 177
V R RPK E VGQ V + +++ +L H +F G G+GKTT+A I A
Sbjct: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVA 76
Query: 178 KSLNCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGK 357
+ T++ P +LE D+ M+ N +
Sbjct: 77 NEMGVNLRTTSGP-----------------VLE-------KAGDLAAMLTNLE------P 106
Query: 358 FKVYLIDEVHMLSKAAFNALLKTLEE 435
V IDE+H LS L +E+
Sbjct: 107 HDVLFIDEIHRLSPVVEEVLYPAMED 132
>gi|111978|pir||S24169 mucin - rat
Length = 292
Score = 36.7 bits (83), Expect = 0.60
Identities = 51/236 (21%), Positives = 81/236 (33%), Gaps = 12/236 (5%)
Frame = -2
Query: 1487 LNSMRSTNASHCPTSVIFPSKEPTPTLFTSVVSG----------TRSIAPSEEESTDCSA 1338
+ S +T+ + PTS PTP + T+ + G T + +P S S+
Sbjct: 3 VTSTPTTSETPTPTSTTTEISTPTPHVTTTTIIGSSTSTPTTTITETPSPPSTISETASS 62
Query: 1337 HTDTFSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWR--SERDWDIVYPLAPC 1164
+ T S + + P + P + + + + I P P
Sbjct: 63 TSPTTESTSSTSTTSQTPTPTPTTIKETPTSTSTVPTTGSTSSKPPTGSSTPITSPSTPS 122
Query: 1163 ASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIA 984
+ +S S+ S TT +S+ ST S P+ G S P
Sbjct: 123 PPTESTTLSSTPVTTTATSSTTSSPGTTSPFATSSVSSTPPSPPSSTSGPTTSSGMPT-- 180
Query: 983 IWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVA 804
S TT+G + +P + T TS I R S+T P
Sbjct: 181 ---SSKTTTGPTSPTTRPPSTSTPTSPTVPTSTTEAI---TQTRLSSTTPTMETTRTSSW 234
Query: 803 ITRNSRSP 780
T +S SP
Sbjct: 235 GTVSSASP 242
>gi|82547|pir||S18235 omega secalin precursor (clone pSec1B) - rye
>gi|21202|emb|CAA42836| (X60294) Sec1 precursor [Secale
cereale]
Length = 357
Score = 36.7 bits (83), Expect = 0.60
Identities = 62/253 (24%), Positives = 85/253 (33%), Gaps = 3/253 (1%)
Frame = -3
Query: 1378 PSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQN 1199
P PQ+ Q QPTP Q P +P LPL+ QS + Q
Sbjct: 61 PYQPQQPFPQPQQPTPIQPQQ----PFPQRPQQPFPQPQQQLPLQPQQSFPQPQHPIPQQ 116
Query: 1198 GIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQE---QVGKRASAALPSQILH 1028
S+ P P QQ P Q Q + P+QPQ+ Q +R A P QI+
Sbjct: 117 P-QQSFPQQPQ-RPEQQFPQQPQQIIPQQTQ-QPFPLQPQQPFPQQPQRPFAQQPEQIIS 173
Query: 1027 VDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGP 848
P QP F +P + Q P + + P+ + LQP
Sbjct: 174 QQPFP---------------LQPQQPFSQPQQPFP----QQPGQIIPQQPQQPSPLQPQQ 214
Query: 847 PTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWP 668
P + QP P + + + P PQ Q + P Q Q P
Sbjct: 215 PFSQQPQRPQQPFPQQPQQIIPQQPQQPFPLQPQQPVPQQPQRPFGQQPEQIISQRPQQP 274
Query: 667 GPAKTNHRVMNRQQPW 620
P + QQP+
Sbjct: 275 FPLQPQQPFSQPQQPF 290
>gi|5104673|dbj|BAA79988.1| (AP000060) 141aa long hypothetical
protein [Aeropyrum pernix]
Length = 141
Score = 36.7 bits (83), Expect = 0.60
Identities = 35/115 (30%), Positives = 46/115 (39%), Gaps = 9/115 (7%)
Frame = -3
Query: 937 IRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQP 758
+ H+ HL P A+PE A + P P +P P P LL P H Q
Sbjct: 19 VEVHISLHLLRRP----ALPEE-ACVAPAPRSPVPRRHPRHPMLLGP----EHHNTSRQA 69
Query: 757 TSPQPEYDQPYRACH---------VLHPRVTPLQHKQWPGPAKTNHRVMNRQQPWKAL*S 605
P+P +R CH V V P QH P P +NH ++ +
Sbjct: 70 PPPKPPCSL-HRLCHPEDVVGEPGVPVVEVGPCQHHPSPPPVHSNHVIVPPPLDTSVNPN 128
Query: 604 PHRP 593
PH P
Sbjct: 129 PHNP 132
>gi|1707244 (U80845) weak similarity to drosophila homeotic gene
regulator BRM (Brahma protein) (SP:P25439)
[Caenorhabditis elegans]
Length = 1307
Score = 36.7 bits (83), Expect = 0.60
Identities = 74/336 (22%), Positives = 122/336 (36%), Gaps = 9/336 (2%)
Frame = -3
Query: 1633 PATGSTPGSNRPQNVSIVDIQTPDLTLNTGRCSHERQKRHEQPIA*KDHLTQCARPTQAI 1454
P++ +TP Q + + IQ + +N G ++ +H+Q Q P +
Sbjct: 681 PSSMNTPPQ---QQMRMQQIQQNNQNMNNGSPHQQQPLQHQQ--------MQQNAPNMNM 729
Query: 1453 AQHQ*SSHPKNQLRLYSLQLLAGHVPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTY 1274
P+ Q+R+ + PQ + QT P P H Q P+
Sbjct: 730 P-------PQQQIRIQQQE---------PQMLQGQTNGPPPPHQQQQQ-QPVRVAQVAQQ 772
Query: 1273 PYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAP----Q 1106
P P + +S + QN + P QQ QH + P
Sbjct: 773 PQNMQIPPRQMTPQQSQSIHGSMQNSPQNPQMRMNLAPPQQQ-----QQHHQNQPPMQGN 827
Query: 1105 PKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRD-VH*LPSGTKVAQPPAVFVRPIRQ 929
P+SD PQ Q P + +H PN+ R H + + Q P
Sbjct: 828 PQSDRQMPQMQ--------QPGRQIH----PNIKRQPQHQMQQNRSMQQGP--------- 866
Query: 928 HLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRL-LSPAIVDHRHLRLMQPT- 755
H+ Q P ++ + ++Q P + +P QP L L ++MQP
Sbjct: 867 ---HNPQNIPDQMM----NMQQMQQDPMSQQPLQESPQPNLHLQHHQTPPMQSQMMQPVV 919
Query: 754 --SPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKTNHRVMNRQQ 626
+ +P+ DQ R + H + +Q+K P + N + M QQ
Sbjct: 920 TDNFEPDNDQTIR-INGEHAIINGMQYKLVPQQRQQNQQKMPNQQ 963
>gi|2769560|emb|CAA67558| (X99106) gp340 [Human herpesvirus 4]
Length = 856
Score = 36.7 bits (83), Expect = 0.60
Identities = 40/136 (29%), Positives = 60/136 (43%), Gaps = 5/136 (3%)
Frame = -2
Query: 1100 IRSGATTGTGRKASIRSTAISNP--TRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKAT 927
I S A T ++ +T ++P T GL + L A +T V +A+ +
Sbjct: 420 IFSKAPESTTTSPTLNTTGFADPNTTTGLPSSTHVPTNLTA----PASTGPTVSTADVTS 475
Query: 926 FNPSPANTTEGTSCCT*ILC-KASARASNTPPQSGENSAKVAITRNSRSPSPAIN--AAN 756
P+PA TT G S T + + S P + SA T N SP+PA+ N
Sbjct: 476 --PTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNGTSPTPAMTTPTPN 533
Query: 755 ITST*VRSTVPSMSRTAPSRN 693
TS + T P+ + T P+ N
Sbjct: 534 ATSPTLGKTSPTSAVTTPTPN 554
Score = 36.4 bits (82), Expect = 0.78
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 8/155 (5%)
Frame = -2
Query: 1157 LPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIW 978
+PT+ + AST +A++ S GT AS + + S G +K
Sbjct: 454 VPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPD-------- 505
Query: 977 YQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAIT 798
+ TS T +P+PA TT + + L K S ++ T P S A+T
Sbjct: 506 -MTSPTSAVTTPTPNGT-SPTPAMTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVT 563
Query: 797 R---NSRSP-----SPAINAANITST*VRSTVPSMSRTAPSRN 693
N+ SP SP NA N T + T P+ T+P +N
Sbjct: 564 TPTPNATSPTVGETSPQANATNHT---LGGTSPTPVVTSPPKN 603
>gi|5917666|gb|AAD55980.1|AF159297_1 (AF159297) extensin-like protein
[Zea mays]
Length = 1315
Score = 36.7 bits (83), Expect = 0.60
Identities = 61/220 (27%), Positives = 74/220 (32%), Gaps = 3/220 (1%)
Frame = -3
Query: 1387 GHVPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTG 1208
G PS+P K A PTP H+ D V P E +P AP R
Sbjct: 424 GKPPSVPGKPAAPAPMPTP-HTPPD-------VSPEPLP-EPSPVPAPAPMRMPTLRS-- 472
Query: 1207 DQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQ---PQEQVGKRASAALPSQ 1037
P Y TP V A +P S P P Q A+++ P+
Sbjct: 473 ------------PPADEYIPTPPV----PAKSPPGTSPPASRGAPPLQAQPPAASSPPA- 515
Query: 1036 ILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQ 857
V S P + V LP K PPA P PP+A V+ P+ K
Sbjct: 516 -TPVKSSPPPAAVV--LPPPAKTPSPPAPVASP-----------PPEAPVSSPQPQVK-S 560
Query: 856 PGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQP 728
P PP P SP PA V + P P P P
Sbjct: 561 PPPPAPVASPPPPMKSPPPPARVASPPPLMKSPPPPAPVASPP 603
Score = 34.0 bits (76), Expect = 3.9
Identities = 36/112 (32%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Frame = -3
Query: 1123 SAHAPQPKSDP----VQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPP 956
S+ P PKS P V V K + P V S P + LP V+ PP
Sbjct: 953 SSPPPTPKSSPPPAPVSSPPPVVKSSPPPAP-----VSSPPPTPKP---LPPPAPVSSPP 1004
Query: 955 AVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIV 788
V +PP V+ P K P PPTP SP T L PA V
Sbjct: 1005 PVVK-----------SSPPPTPVSSPPPTPKPLPPPPTPVSSPPPTXKPLPPPAPV 1049
>gi|4104321 (AF034582) vesicle associated protein [Rattus norvegicus]
Length = 1249
Score = 36.7 bits (83), Expect = 0.60
Identities = 58/221 (26%), Positives = 79/221 (35%), Gaps = 7/221 (3%)
Frame = -3
Query: 1390 AGHVPSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQT 1211
AGH PQ + Q+ Q P + + +TT LP P + + Q
Sbjct: 818 AGH----PQVSRVQSQQYYPQ-------VRIAPTVTTWSDRTPTALPSHPPAACPSDTQG 866
Query: 1210 GDQNGIGTSYIH*PHVHPYQQTPLV---GHQHSAHAPQPKSDPVQPQEQ--VGKRASAAL 1046
G+ G +I +V P PL GH HS P P+ P QP +Q +G SA
Sbjct: 867 GNPPPPG--FIMHGNVVPNSPAPLPTSPGHMHSQPPPYPQPQPYQPAQQYSLGTGGSAVY 924
Query: 1045 -PSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESC 869
P Q + + + P + QP +P PP P S
Sbjct: 925 RPQQPVAPPASKRYPNAPYVSPVASYSGQPHMYTAQPASSPTSSSAPLPPP-----PSSG 979
Query: 868 AKLQ-PGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQP 728
A Q GP P S A P + L Q T PQ ++ P
Sbjct: 980 ASFQHGGPGAPPSSSAYALPPGTTGTPPAASELPASQRTGPQNGWNDP 1027
>gi|6321759|ref|NP_011835.1|WSC4| Putative integral membrane protein
containing novel cysteine motif. Similarity to SLG1
(WSC1), WSC2 and WSC3; Wsc4p
>gi|731607|sp|P38739|YHC8_YEAST HYPOTHETICAL 63.8 KD
PROTEIN IN GUT1-RIM1 INTERGENIC REGION PRECURSOR
>gi|626575|pir||S48940 hypothetical protein YHL028w -
yeast (Saccharomyces cerevisiae) >gi|2289857 (U11583)
Similiar to mucin and several other Ser-Thr-rich proteins
[Saccharomyces cerevisiae]
Length = 605
Score = 36.4 bits (82), Expect = 0.78
Identities = 42/164 (25%), Positives = 63/164 (37%), Gaps = 9/164 (5%)
Frame = -2
Query: 1178 PLAPCASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS* 999
PL+ S+ T S S+ I S ++T +I T S T L S
Sbjct: 114 PLSSVQSVETSTESSVYV----SSSSITSSSSTSIVDTTTISPTLTSTSTTPLTTASTST 169
Query: 998 RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGEN 819
P I TT+ S + T S +TT TS T ++ S T +
Sbjct: 170 TPSTDITSALPTTTSTKLSTSIPTSTTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSST 229
Query: 818 SAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAP---------SRNTP 687
+ + +S S ++A I+++ ST S S T+P S TP
Sbjct: 230 LISTSTSSSSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTP 282
>gi|3413878|dbj|BAA32303| (AB007927) KIAA0458 protein [Homo sapiens]
Length = 1268
Score = 36.4 bits (82), Expect = 0.78
Identities = 48/198 (24%), Positives = 65/198 (32%)
Frame = -3
Query: 1240 PQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKR 1061
PQ A Q +Q T+ + PH H Q L + + P P P P + +
Sbjct: 507 PQGSPTASQAPNQPQAPTAPV--PHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPL--T 562
Query: 1060 ASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAV 881
SA PS H +H G P ++ P+ QH PP+
Sbjct: 563 GSAGQPSAPSHAQP------PLH----GQGPPGPHSLQAGPLLQH-----PGPPQPFGLP 607
Query: 880 PESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHP 701
P++ G SPA P L+ QP QP P H+ P
Sbjct: 608 PQA----SQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPP 663
Query: 700 RVTPLQHKQWPGPAKTNH 647
TP+ Q P P H
Sbjct: 664 PTTPI--PQLPAPQAHKH 679
>gi|3876365|emb|CAA93285.1| (Z69360) cDNA EST EMBL:D66541 comes from
this gene; cDNA EST EMBL:D70355 comes from this gene;
cDNA EST EMBL:C10435 comes from this gene; cDNA EST
EMBL:C12135 comes from this gene; cDNA EST yk191a6.3
comes from this gene; cDN...
Length = 798
Score = 36.4 bits (82), Expect = 0.78
Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 6/71 (8%)
Frame = -3
Query: 880 PESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP---EYDQPY---RA 719
P C + QP P P+P P +T L SP ++ QP PQP +Y QP
Sbjct: 119 PPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYEN------QPQPPQPQQQQYPQPQPQRGG 172
Query: 718 CHVLHPRVTPLQHKQWP 668
C P+ P Q Q P
Sbjct: 173 CTYSQPQPQPQQQPQPP 189
>gi|628185|pir||S42447 nuclear protein EBNA2 - Epstein-Barr virus
>gi|330444 (K03333) nuclear protein EBNA2 [Epstein-Barr
virus]
Length = 490
Score = 36.4 bits (82), Expect = 0.78
Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Frame = -3
Query: 988 LPSGTKVA------QPPAVFVRPIRQHLIHHLQ----TPPKALVAVPESCAKLQPGPPTP 839
LP G + A QP +RP ++ L TPP+ L+ P +P PPTP
Sbjct: 155 LPQGPQTAPQARLVQPHVPPLRPTAPTILSPLSQPRLTPPQPLMMPP------RPTPPTP 208
Query: 838 RP------SPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLH---PRVTPL 686
P P T+P L P + L +PT QP P VLH + PL
Sbjct: 209 LPPATLTVPPRPTRPTTLPPTPL---LTVLQRPTELQPTPSPPRMHLPVLHVPDQSMHPL 265
Query: 685 QHKQWP 668
H+ P
Sbjct: 266 THQSTP 271
>gi|6174969|sp|P96115|RUVB_TREPA HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|3322427 (AE001200) Holliday junction DNA helicase
(ruvB) [Treponema pallidum]
Length = 350
Score = 36.4 bits (82), Expect = 0.78
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Frame = +1
Query: 22 RKWRPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSL 186
R RP+ + +GQE R L +++ R L H FL G G+GKTT+A I A
Sbjct: 22 RALRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLI-GPPGLGKTTLAHITA--- 77
Query: 187 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKV 366
CE G +E +D +++ A + + + V
Sbjct: 78 -CELG-----------------------VECKVTGAPALDKPKDL---AGILTALSERSV 110
Query: 367 YLIDEVHMLSKAAFNALLKTLEE 435
+ +DE+H L A L +E+
Sbjct: 111 FFVDEIHRLKPAIEEMLYIAMED 133
>gi|1052834 (M93360) ORF UL119 [Macaca mulatta cytomegalovirus]
Length = 238
Score = 36.4 bits (82), Expect = 0.78
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 3/163 (1%)
Frame = -2
Query: 1184 VYPLAPCASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCK 1005
V LA + I G ST + A T + A ST S+PT +
Sbjct: 7 VLALAAAVLIAQQVIGGTSTT---------TAANTTSTTTAPSTSTVTSSPTSVTTSVAS 57
Query: 1004 S*RPLIAIWYQSC---TTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPP 834
S ++ S TTSG V S +K++ + S T+ T+ +++ +SN
Sbjct: 58 SSATASSVTSSSAAASTTSGTVTSTSKSSTDSSTQTTSSNTTTAP-ATTESATTSSNASE 116
Query: 833 QSGENSAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSR 696
+ ENS A T N+ S + + + + ++ ST + + T P R
Sbjct: 117 NTTENST--ATTNNTTSDNVTTDTSTVATS--ISTTVTAATTTPPR 158
>gi|532113 (U13646) homeotic region most like HMPB_DROME: homeotic
proboscipedia protein [Caenorhabditis elegans]
Length = 3507
Score = 36.4 bits (82), Expect = 0.78
Identities = 35/105 (33%), Positives = 60/105 (56%), Gaps = 13/105 (12%)
Frame = -2
Query: 944 SANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSP----- 780
S+++A SPA TTE ++ ++S + S TP + E+S+++ + +S+SP
Sbjct: 2044 SSSEAPLTSSPATTTE-------VITESSVK-STTPKE--ESSSEITVKLSSKSPEVTES 2093
Query: 779 --SPAINAANITST*VRSTVPSMSRT------APSRNTPPA*AMAWSSKDKPSRNEPS 630
+ + + TS V STVP S++ AP +T P + SS+ KPS + S
Sbjct: 2094 SVKSSPSTPSTTSQSVTSTVPETSKSTVLSSEAPVTSTSPT-EVHTSSETKPSLSASS 2150
>gi|4680231|gb|AAD27584.1|AF118275_1 (AF118275) atrophin-related
protein ARP [Homo sapiens]
Length = 995
Score = 36.4 bits (82), Expect = 0.78
Identities = 48/198 (24%), Positives = 65/198 (32%)
Frame = -3
Query: 1240 PQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKR 1061
PQ A Q +Q T+ + PH H Q L + + P P P P + +
Sbjct: 204 PQGSPTASQAPNQPQAPTAPV--PHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPL--T 259
Query: 1060 ASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAV 881
SA PS H +H G P ++ P+ QH PP+
Sbjct: 260 GSAGQPSAPSHAQP------PLH----GQGPPGPHSLQAGPLLQH-----PGPPQPFGLP 304
Query: 880 PESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHP 701
P++ G SPA P L+ QP QP P H+ P
Sbjct: 305 PQA----SQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPP 360
Query: 700 RVTPLQHKQWPGPAKTNH 647
TP+ Q P P H
Sbjct: 361 PTTPI--PQLPAPQAHKH 376
>gi|6649857|gb|AAF21601.1|AF009222_1 (AF009222) kexin-like serine
endoprotease [Pneumocystis carinii]
Length = 493
Score = 36.4 bits (82), Expect = 0.78
Identities = 38/128 (29%), Positives = 49/128 (37%), Gaps = 8/128 (6%)
Frame = -3
Query: 1111 PQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIR 932
PQP S+P P E + +S P P D PS K P RP
Sbjct: 263 PQPPSEPAPPSEPESQPSSE--PGSQPPSKPGPQPPSDPQ-PPSDLKPPSKPDARPRPPS 319
Query: 931 QHLIHHLQTPPKALVAVPESCAKLQPGPPT--------PRPSPAKTQPRLLSPAIVDHRH 776
Q P +L + P S + +P PP+ P P+PA PR +
Sbjct: 320 DPSSQ--QDPDTSLSSNPTSTSSSEPPPPSPPPPPPPPPAPAPAPAPPRPELEPEPEPGP 377
Query: 775 LRLMQPTSPQPEYDQP 728
+ QP PQP QP
Sbjct: 378 EPVPQPPQPQPPQPQP 393
>gi|3876366|emb|CAA93286.1| (Z69360) cDNA EST yk253f12.3 comes from
this gene; cDNA EST yk253f12.5 comes from this gene
[Caenorhabditis elegans]
Length = 387
Score = 36.4 bits (82), Expect = 0.78
Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 6/71 (8%)
Frame = -3
Query: 880 PESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP---EYDQPY---RA 719
P C + QP P P+P P +T L SP ++ QP PQP +Y QP
Sbjct: 119 PPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYEN------QPQPPQPQQQQYPQPQPQRGG 172
Query: 718 CHVLHPRVTPLQHKQWP 668
C P+ P Q Q P
Sbjct: 173 CTYSQPQPQPQQQPQPP 189
>gi|3372354 (AF041104) atrophin-1 like protein [Homo sapiens]
Length = 1012
Score = 36.4 bits (82), Expect = 0.78
Identities = 48/198 (24%), Positives = 65/198 (32%)
Frame = -3
Query: 1240 PQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKR 1061
PQ A Q +Q T+ + PH H Q L + + P P P P + +
Sbjct: 221 PQGSPTASQAPNQPQAPTAPV--PHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPL--T 276
Query: 1060 ASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAV 881
SA PS H +H G P ++ P+ QH PP+
Sbjct: 277 GSAGQPSAPSHAQP------PLH----GQGPPGPHSLQAGPLLQH-----PGPPQPFGLP 321
Query: 880 PESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHP 701
P++ G SPA P L+ QP QP P H+ P
Sbjct: 322 PQA----SQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPP 377
Query: 700 RVTPLQHKQWPGPAKTNH 647
TP+ Q P P H
Sbjct: 378 PTTPI--PQLPAPQAHKH 393
>gi|3411015 (AF016005) atrophin-1 related protein [Homo sapiens]
Length = 1012
Score = 36.4 bits (82), Expect = 0.78
Identities = 48/198 (24%), Positives = 65/198 (32%)
Frame = -3
Query: 1240 PQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKR 1061
PQ A Q +Q T+ + PH H Q L + + P P P P + +
Sbjct: 221 PQGSPTASQAPNQPQAPTAPV--PHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPL--T 276
Query: 1060 ASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAV 881
SA PS H +H G P ++ P+ QH PP+
Sbjct: 277 GSAGQPSAPSHAQP------PLH----GQGPPGPHSLQAGPLLQH-----PGPPQPFGLP 321
Query: 880 PESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHP 701
P++ G SPA P L+ QP QP P H+ P
Sbjct: 322 PQA----SQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPP 377
Query: 700 RVTPLQHKQWPGPAKTNH 647
TP+ Q P P H
Sbjct: 378 PTTPI--PQLPAPQAHKH 393
>gi|100617|pir||S18350 seed storage protein - barley
>gi|19001|emb|CAA42642| (X60037) unnamed protein product
[Hordeum vulgare]
Length = 260
Score = 36.4 bits (82), Expect = 0.78
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = -3
Query: 910 QTPPKALVAVPESCAKLQPGPPTPRPSPAKTQ-PRLLSPAIVDHRHLRLMQPTSPQPEYD 734
Q P + + P+ +QP P P+P P Q P+ SP + +QP P P+
Sbjct: 137 QQPQQIIFQQPQQSYPVQPQQPFPQPQPVPQQRPQQASPLQPQPQQASPLQPQQPFPQGS 196
Query: 733 QPYRACHVLHPRVTPLQHKQWPGPAKTNHRVMNRQQPWKAL*SPHRP 593
+ ++ + PLQ + +P QQP + L P +P
Sbjct: 197 E-----QIIPQQPFPLQPQPFP------------QQPQQPLPQPQQP 226
>gi|119111|sp|P12978|EBN2_EBV EBNA-2 NUCLEAR PROTEIN
>gi|1083964|pir||S42442 EBNA2 protein - human
herpesvirus 4 >gi|1632787|emb|CAA24877.1| (V01555)
BYRF1, encodes EBNA-2 (Dambaugh et al, 1984; Dillner et
al, 1984) [Human herpesvirus 4]
Length = 487
Score = 36.4 bits (82), Expect = 0.78
Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Frame = -3
Query: 988 LPSGTKVA------QPPAVFVRPIRQHLIHHLQ----TPPKALVAVPESCAKLQPGPPTP 839
LP G + A QP +RP ++ L TPP+ L+ P +P PPTP
Sbjct: 152 LPQGPQTAPQARLVQPHVPPLRPTAPTILSPLSQPRLTPPQPLMMPP------RPTPPTP 205
Query: 838 RP------SPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLH---PRVTPL 686
P P T+P L P + L +PT QP P VLH + PL
Sbjct: 206 LPPATLTVPPRPTRPTTLPPTPL---LTVLQRPTELQPTPSPPRMHLPVLHVPDQSMHPL 262
Query: 685 QHKQWP 668
H+ P
Sbjct: 263 THQSTP 268
>gi|3914142|sp|P93329|NO20_MEDTR EARLY NODULIN 20 PRECURSOR (N-20)
>gi|1771351|emb|CAA67830| (X99467) ENOD20 [Medicago
truncatula]
Length = 268
Score = 36.4 bits (82), Expect = 0.78
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 901 PKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP 743
P++ +P + P PP+P PSP+ + SP H R P SP P
Sbjct: 145 PRSSTPIPHPPRRSLPSPPSPSPSPSPSPSPSPSPRSTPIPHPRKRSPASPSP 197
>gi|1363259|pir||B56201 transcription factor MEF2D isoform 1b - mouse
>gi|545522|bbs|143829 (S68895) myocyte-specific
enhancer-binding factor 2, MEF2=transcription factor
muscle-specific isoform {alternatively spliced} [mice,
cardiac muscle, Peptide, 506 aa] [Mus sp.]
Length = 506
Score = 36.4 bits (82), Expect = 0.78
Identities = 55/224 (24%), Positives = 82/224 (36%), Gaps = 7/224 (3%)
Frame = -3
Query: 1273 PYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSD 1094
P H+ L AP K R Q G G + H++ Q+ + HS P
Sbjct: 252 PPPTHNTQLGAPSRKPDLRVITSQGGKGLMH----HLNNAQRLGVSQSTHSLTTP----- 302
Query: 1093 PVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHH 914
V A+ +L SQ L S+P + LPS + P + +
Sbjct: 303 -------VVSVATPSLLSQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTA 355
Query: 913 LQTPPKALVAVPESCAKLQPGPPTPRP-SPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEY 737
Q P P + QP PP P+P P + QP L+ ++ + + P SP P
Sbjct: 356 WQQPQPPQQPQPPQPPQSQPQPPQPQPQQPPQQQPHLVPVSLSN------LIPGSPLPHV 409
Query: 736 DQPYRACHVLHPRVT----PLQHKQWPGPAKTNHRVM--NRQQPWKAL*SP 602
HP ++ P+ + PA V R +P + L SP
Sbjct: 410 GAALTV--TTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGEGLSSP 458
>gi|628112|pir||S32988 hypothetical protein - human herpesvirus 4
Length = 512
Score = 36.4 bits (82), Expect = 0.78
Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Frame = -3
Query: 988 LPSGTKVA------QPPAVFVRPIRQHLIHHLQ----TPPKALVAVPESCAKLQPGPPTP 839
LP G + A QP +RP ++ L TPP+ L+ P +P PPTP
Sbjct: 177 LPQGPQTAPQARLVQPHVPPLRPTAPTILSPLSQPRLTPPQPLMMPP------RPTPPTP 230
Query: 838 RP------SPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLH---PRVTPL 686
P P T+P L P + L +PT QP P VLH + PL
Sbjct: 231 LPPATLTVPPRPTRPTTLPPTPL---LTVLQRPTELQPTPSPPRMHLPVLHVPDQSMHPL 287
Query: 685 QHKQWP 668
H+ P
Sbjct: 288 THQSTP 293
>gi|6224911|gb|AAF06008.1|AF193023_2 (AF193023) LpsB [Sinorhizobium
meliloti]
Length = 351
Score = 36.0 bits (81), Expect = 1.0
Identities = 28/91 (30%), Positives = 39/91 (42%)
Frame = +1
Query: 826 PDWGGVLEALAEALHRIQVQQLVPSVVFAGDGLNVALLAEQTQPEVVQLWYQMAINGRHD 1005
PDWG ++ A H +L V AG + + E T + WY+ D
Sbjct: 197 PDWGAIVAGRATGPHLAFESELKERVAKAGLADRILFVGEHTN---IPDWYRAL-----D 248
Query: 1006 LHLAPSPRVGFEMAVLRMLAFRPVPVVAPDL 1098
L +AP GF + L +A VPVVA D+
Sbjct: 249 LFVAPQRWEGFGLTPLEAMA-TGVPVVATDV 278
>gi|4803957|gb|AAD29829.1|AC006202_7 (AC006202) putative
proline/hydroxyproline-rich glycoprotein [Arabidopsis
thaliana]
Length = 653
Score = 36.0 bits (81), Expect = 1.0
Identities = 39/135 (28%), Positives = 51/135 (36%)
Frame = -3
Query: 1132 HQHSAHAPQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPA 953
HQ S APQPK P+ Q V + + S L SV +R +H +K QP
Sbjct: 484 HQSSCKAPQPK--PISQQPAVQSKTD-IINSTALPRPSVTTEARPLH--QPRSKTPQPKP 538
Query: 952 VFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHL 773
V P +Q TP ++ + P TP+P P P I +H
Sbjct: 539 VSQPPAKQSNTEINSTPHPRPSVTSKAISLQSPPCNTPQPRP--------PPLISNH--- 587
Query: 772 RLMQPTSPQPEYDQP 728
PTS QP P
Sbjct: 588 ---TPTSYQPASAPP 599
>gi|1076501|pir||S52985 cell wall protein - alfalfa >gi|3818416
(AF028841) proline-rich cell wall protein [Medicago
sativa]
Length = 381
Score = 36.0 bits (81), Expect = 1.0
Identities = 41/170 (24%), Positives = 63/170 (36%), Gaps = 1/170 (0%)
Frame = -3
Query: 1171 PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH 992
P HP P V H+ ++P PK +P K + PS P+V + H
Sbjct: 36 PTHHPPIVKPPV-HKRRKYSPTPKPPVHKPPRYPPKPSPCPPPSS---TPKPPHVPKPPH 91
Query: 991 *LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQP 812
+PP V + + +H P +V P P PP +P P +P
Sbjct: 92 -------HPKPPVVHPPHVPKPPVHPPYVPKPPIVKPPIVHPPYVPKPPVVKPPPYVPKP 144
Query: 811 RLLSPAIVDHRH-LRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGP 662
++ P V + + P P+P +P +V P V P+ P P
Sbjct: 145 PVVRPPYVPKPPVVPVTPPYVPKPPVVRP---PYVPKPPVVPVTPPYVPKP 192
Score = 36.0 bits (81), Expect = 1.0
Identities = 45/151 (29%), Positives = 58/151 (37%), Gaps = 8/151 (5%)
Frame = -3
Query: 1180 IH*PHVH------PYQQTPLVGHQHSAHAPQ-PKSDPVQPQEQVGKRASAALPSQILHVD 1022
+H PHV PY P + H P PK V+P V K P +V
Sbjct: 98 VHPPHVPKPPVHPPYVPKPPIVKPPIVHPPYVPKPPVVKPPPYVPKPPVVRPP----YVP 153
Query: 1021 SVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPT 842
P V +P V +PP V P+ ++ PP +V P P PP
Sbjct: 154 KPPVVPVTPPYVPK-PPVVRPPYVPKPPVVPVTPPYVPKPP--IVKPPIVFPPHVPLPPV 210
Query: 841 -PRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQP 728
P P P P ++ P IV H+ L P Y QP
Sbjct: 211 VPSPPPYVPSPPIVKPPIVFPPHVPLPPVVPVTPPYVQP 249
>gi|1777932 (U55214) RuvB' [Treponema pallidum]
Length = 82
Score = 36.0 bits (81), Expect = 1.0
Identities = 26/60 (43%), Positives = 33/60 (54%), Gaps = 5/60 (8%)
Frame = +1
Query: 22 RKWRPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSL 186
R RP+ + +GQE R L +++ R L H FL G GVGKTT+A I A
Sbjct: 22 RALRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLI-GPPGVGKTTLAHITA--- 77
Query: 187 NCEQG 201
CE G
Sbjct: 78 -CELG 81
>gi|1362802|pir||S56015 gastric mucin - human (fragment)
>gi|547517|emb|CAA57309| (X81649) gastric mucin [Homo
sapiens] >gi|1098035|prf||2115204A mucin [Homo sapiens]
Length = 850
Score = 36.0 bits (81), Expect = 1.0
Identities = 71/248 (28%), Positives = 104/248 (41%), Gaps = 23/248 (9%)
Frame = -2
Query: 1433 PSKEPTPTLFTS-----VVSGTRSIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPI 1269
P+ PT F+ VVS T + PS S SAHT SS TA LP
Sbjct: 316 PTTPVPPTTFSFSTPPLVVSSTHT--PSNGPS---SAHTGPPSSAWPTTAGTSPRTRLPT 370
Query: 1268 RMSS-PPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISGAST----LCPCP-S 1107
+S PP+ G E C + W D+ P S D + +C P S
Sbjct: 371 ASASLPPVCG---EKCLWSPWM-----DVSRPGRGTDSGDFDTLENLRAHGYRVCESPRS 422
Query: 1106 AEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWY------QSCTTSGCVC 945
E R+ G +A + S +G C++ + Y Q CT C
Sbjct: 423 VECRAEDAPGVPLRALGQRVQCSPD---VGLTCRNREQASGLCYNYQIRVQCCTPLACST 479
Query: 944 SANKA-TFNPSPANTTE----GTSCCT*ILCKASARASNTPPQSGE-NSAKVAITRNSRS 783
S++ A T P+ + TTE G+S + S + T P G S K + S
Sbjct: 480 SSSPAQTTPPTTSKTTETRASGSSAPSSTPGTVSLSTARTTPAPGTATSVKKTFSTPSPP 539
Query: 782 PSPAINAANITST*VRSTVPSMSRTAPSRNT 690
P PA + +++++T ++V S T +T
Sbjct: 540 PVPATSTSSMSTTAPGTSVVSSKPTPTEPST 570
>gi|2498877|sp|Q57396|RUVB_SYNY3 HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|1001619|dbj|BAA10350| (D64002) Holliday junction DNA
helicase RuvB [Synechocystis sp.] >gi|1256590 (U38892)
RuvB [Synechocystis sp.]
Length = 361
Score = 36.0 bits (81), Expect = 1.0
Identities = 21/62 (33%), Positives = 36/62 (57%), Gaps = 5/62 (8%)
Frame = +1
Query: 31 RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 195
RP+R A+ +GQ + L A+++ + + H L+ G G+GKTT+A I A+ +
Sbjct: 43 RPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLY-GPPGLGKTTLALILAEEMQVR 101
Query: 196 QGTSADP 216
+A P
Sbjct: 102 CKITAAP 108
>gi|6681229|ref|NP_031907.1|| dentatorubral pallidoluysian atrophy
>gi|1549217|dbj|BAA13450| (D87744) DRPLA protein [Mus
musculus]
Length = 1175
Score = 36.0 bits (81), Expect = 1.0
Identities = 41/147 (27%), Positives = 53/147 (35%), Gaps = 3/147 (2%)
Frame = -3
Query: 1252 PLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQ 1073
P P+ +AA G +G HP TP+ A P P P
Sbjct: 233 PPMGPKGGAAASSVGAPSG--------GKQHPPPTTPIPISSSGASGAPPAKPPSAPVGG 284
Query: 1072 VGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKA 893
G SA P+ HV PN+ P A PP + +PI HL +
Sbjct: 285 -GSLPSAPPPASFPHV--TPNLPPPPALRPLNNASASPPGMGAQPIPGHL--------PS 333
Query: 892 LVAVPESCAKLQPGP---PTPRPSPAKTQP 812
A+ + + L PGP PT PSP P
Sbjct: 334 PHAMGQGMSGLPPGPEKGPTLAPSPHPLPP 363
>gi|2289904 (AC002397) DRPLA [Mus musculus]
Length = 1175
Score = 36.0 bits (81), Expect = 1.0
Identities = 41/147 (27%), Positives = 53/147 (35%), Gaps = 3/147 (2%)
Frame = -3
Query: 1252 PLEAPQSKSAARQTGDQNGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQEQ 1073
P P+ +AA G +G HP TP+ A P P P
Sbjct: 233 PPMGPKGGAAASSVGAPSG--------GKQHPPPTTPIPISSSGASGAPPAKPPSAPVGG 284
Query: 1072 VGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKA 893
G SA P+ HV PN+ P A PP + +PI HL +
Sbjct: 285 -GSLPSAPPPASFPHV--TPNLPPPPALRPLNNASASPPGMGAQPIPGHL--------PS 333
Query: 892 LVAVPESCAKLQPGP---PTPRPSPAKTQP 812
A+ + + L PGP PT PSP P
Sbjct: 334 PHAMGQGMSGLPPGPEKGPTLAPSPHPLPP 363
>gi|6686017|sp|O62732|SYN1_CANFA SYNAPSIN I >gi|2944066 (AF049588)
synapsin I [Canis familiaris]
Length = 415
Score = 36.0 bits (81), Expect = 1.0
Identities = 70/240 (29%), Positives = 89/240 (36%), Gaps = 37/240 (15%)
Frame = -3
Query: 1345 AQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQNGIGTSYIH*PH 1166
AQ P Q DA P H +P + RQT Q P
Sbjct: 143 AQALPRQQQRDAS-----------PGRGSHSQTPSPGALPLGRQTSQQ----------PS 181
Query: 1165 VHPYQQTPLV--GHQHSAHAPQPKSDPVQ----PQEQ-----VGKRASAALPSQILHVDS 1019
P QQ P G PQ + P+Q PQ Q +G A + LP ++ S
Sbjct: 182 GPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTS 241
Query: 1018 VPNV---------------SRDVH*LPSGTKVAQPPAVFVRPIRQ--------HLIHHLQ 908
P SR V P A+PPA P RQ Q
Sbjct: 242 APQQPVSQAQPLSQAQGRQSRPVAGGPGAPPAARPPAS-PSPQRQAGPPQATRQTSVSGQ 300
Query: 907 TPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQP 728
PPKA A P + + GPP P PA + + R PT+ QP P
Sbjct: 301 APPKASGAPPS--GQQRQGPPQKPPGPAGPTRQASQAGPMP----RTGPPTTQQPRPSGP 354
Query: 727 YRACHVLHPRVTPLQHKQWPGPAKTN---HRVMNRQQ 626
A P++ + P PA H +N+ Q
Sbjct: 355 GPAGRPAKPQLAQKPSQDVPSPATAGGPPHPQLNKSQ 391
>gi|4240124|dbj|BAA74842.1| (AB020626) KIAA0819 protein [Homo
sapiens]
Length = 989
Score = 36.0 bits (81), Expect = 1.0
Identities = 24/80 (30%), Positives = 31/80 (38%)
Frame = -3
Query: 889 VAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHV 710
V +PE+ + PG P PRP A + P P SP P QP +
Sbjct: 215 VTLPEARTPVSPGSPQPRPPVAASTP-----------------PPSPLPICSQPQPSTEA 257
Query: 709 LHPRVTPLQHKQWPGPAKTN 650
P T + P PAKT+
Sbjct: 258 TVPSPTQSPIRFQPAPAKTS 277
>gi|565628|emb|CAA57791| (X82395) Msx-1 [Notophthalmus viridescens]
>gi|1095176|prf||2107332A Msx-1 gene [Notophthalmus
viridescens]
Length = 280
Score = 35.6 bits (80), Expect = 1.3
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 11/106 (10%)
Frame = -3
Query: 940 PIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSP-----AIVDHRH 776
PI + L + ++ E C+ P P P P++T P++L P + ++H
Sbjct: 46 PILPFSVEALMADRRPVIRDRERCSPAAP----PLPGPSQTSPKMLGPESPNSPLSTNKH 101
Query: 775 ------LRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKTNHRVMNRQQP 623
L L + +PE + R H P+ +P ++ PA T + ++P
Sbjct: 102 YSMGGLLHLQEEALMKPESPEGQRGAHGPEPKFSPPSARRLSPPACTLRKHKTNRKP 158
>gi|1840139 (U86640) MEL-11 [Caenorhabditis elegans]
>gi|4008340|emb|CAA85318.1| (Z36719) This predicted
protein contains 2 ankyrin-like repeats; cDNA EST
EMBL:D34814 comes from this gene; cDNA EST EMBL:D36298
comes from this gene; cDNA EST EMBL:D67967 comes from
this gene; cDNA EST EMBL:T02424 comes from...
>gi|4008358|emb|CAA87782.1| (Z47809) This predicted
protein contains 2 ankyrin-like repeats; cDNA EST
EMBL:D34814 comes from this gene; cDNA EST EMBL:D36298
comes from this gene; cDNA EST EMBL:D67967 comes from
this gene; cDNA EST EMBL:T02424 comes from...
Length = 1016
Score = 35.6 bits (80), Expect = 1.3
Identities = 65/287 (22%), Positives = 119/287 (40%), Gaps = 13/287 (4%)
Frame = -2
Query: 1487 LNSMRSTNASHCPTSVIFPSKEPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CG 1308
+++ +T A+ PTS PS P + + +S T PS S T + S
Sbjct: 602 VSNTTTTTATVAPTSSTVPST-PVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQ 660
Query: 1307 ATAVL------RNNDDLPI--RMSSPPIGGTAIEVCSK--ADWRSERDWDIV--YPLAPC 1164
+ V RNN + R S+ + +E SK D + R+ ++ YP +
Sbjct: 661 SKTVTESEAERRNNSRMQRQHRRSTQGVTKEQLEEASKFATDEVARRNSQVLSTYPNSLH 720
Query: 1163 ASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIA 984
A L ++ +ST ++ + AT + S + ++GL + R
Sbjct: 721 ARLASEEKDLSSTSDDLKDGDVSTTATVSLINSPNSNSANVRRKSQGLSISRSNRRATGP 780
Query: 983 IWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQS-GENSAKV 807
+ + + + A ++P+ + GT + + S +A + PP S G +S +
Sbjct: 781 VNPEDLAPAMSLRLATAQPYSPASVRSNAGTLPT--MTSRFSEKAQSLPPASNGMSSTQP 838
Query: 806 AITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSA 627
TR+ AI A ++ +R+T P S SR P + + SS + +PS+
Sbjct: 839 LSTRS------AIVAGLSSAPSMRTTAPLSSTATSSRFMP---SSSLSSNGSSANQQPSS 889
>gi|82548|pir||S18236 omega secalin precursor (clone pSec2B) - rye
>gi|21204|emb|CAA42837| (X60295) Sec1 precursor [Secale
cereale]
Length = 357
Score = 35.6 bits (80), Expect = 1.3
Identities = 61/252 (24%), Positives = 84/252 (33%), Gaps = 3/252 (1%)
Frame = -3
Query: 1378 PSLPQKKKAQTAQPTPTHSQADAVLPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQN 1199
P PQ+ Q QP P Q P +P LPL+ Q +Q Q
Sbjct: 61 PYQPQQPFPQPQQPAPIQPQQ----PFPQQPQQPFPQPQQQLPLQPQQPFPQPQQPIPQQ 116
Query: 1198 GIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQE---QVGKRASAALPSQILH 1028
S+ P P QQ P Q Q + P+QPQ+ Q +R+ A P QI+
Sbjct: 117 P-QQSFPQQPQ-RPEQQFPQQPQQIIPQQTQ-QPFPLQPQQPFPQQPQRSFAQQPKQIIS 173
Query: 1027 VDSVPNVSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGP 848
P QP F +P + Q P + + P+ + LQP
Sbjct: 174 QQPFP---------------LQPQQPFSQPQQPFP----QQPGQIIPQQPQQPSPLQPQQ 214
Query: 847 PTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWP 668
P + QP P + + + P PQ Q + P Q Q P
Sbjct: 215 PFSQQPQRPQQPFPQQPQQIIPQQPQQPFPLQPQQPVPQQPQRPFGQQPEQIISQRPQQP 274
Query: 667 GPAKTNHRVMNRQQP 623
P + QQP
Sbjct: 275 FPLQPQQPFSQPQQP 289
>gi|1076802|pir||S49915 extensin-like protein - maize
>gi|600118|emb|CAA84230| (Z34465) extensin-like protein
[Zea mays] >gi|1096557|prf||2111476A extensin-like domain
[Zea mays]
Length = 1188
Score = 35.6 bits (80), Expect = 1.3
Identities = 37/122 (30%), Positives = 49/122 (39%)
Frame = -3
Query: 1114 APQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQPPAVFVRPI 935
APQ KS P P QV A S L S P P K + PPA P+
Sbjct: 779 APQVKSSP--PPVQVSSPPPAPKSSPPLAPVSSP---------PQVEKTSPPPA----PL 823
Query: 934 RQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPT 755
+ +PP +V+ P K P PP P SP T P+ SP +++P+
Sbjct: 824 SSPPLAPKSSPPHVVVSSPPPVVKSSP-PPAPVSSPPLT-PKPASPPAHVSSPPEVVKPS 881
Query: 754 SP 749
+P
Sbjct: 882 TP 883
Score = 34.4 bits (77), Expect = 3.0
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Frame = -3
Query: 1111 PQPKSDP--VQPQEQVGKRASAALPSQILHVDSVPNVS---RDVH*LPSGTKVAQPPAVF 947
P+P S P V +V K ++ P+ ++ S P S V P K + PPA+
Sbjct: 862 PKPASPPAHVSSPPEVVKPSTPPAPTTVISPPSEPKSSPPPTPVSLPPPIVKSSPPPAMV 921
Query: 946 VRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRL 767
P + +PP +V+ P K P PP P SP T PA V+ +
Sbjct: 922 SSPP----MTPKSSPPPVVVSSPPPTVKSSP-PPAPVSSPPATPKSSPPPAPVNLPPPEV 976
Query: 766 MQPTSPQPEYDQP 728
P P P
Sbjct: 977 KSSPPPTPVSSPP 989
>gi|1491621|emb|CAB01605| (Z78205) UL36 [Bovine herpesvirus 1]
>gi|2653311|emb|CAA06097| (AJ004801) very large virion
protein (tegument) [Bovine herpesvirus type 1.1]
Length = 3247
Score = 35.6 bits (80), Expect = 1.3
Identities = 62/212 (29%), Positives = 74/212 (34%), Gaps = 16/212 (7%)
Frame = -3
Query: 1378 PSLPQKKKAQTAQPTPTHSQADAV-LPLCCVITTTYPYECHHLPLEAPQSKSAARQTGDQ 1202
P LP P PT + A LPL IT P P+ AP A T
Sbjct: 2675 PPLPPPALTPALTPAPTPAPTPAPPLPLPAPITVLVP-----APVPAPAPIPAPAPT--- 2726
Query: 1201 NGIGTSYIH*PHVHPYQQTPLVGHQHSAHAPQPKSDPV--------QPQEQVGKRAS--A 1052
P P PL P P D +P + G R S A
Sbjct: 2727 ----------PAPAPTPAPPL---------PPPAPDGAMGALSATRRPTRRAGARKSLPA 2767
Query: 1051 ALPSQIL----HVDSVPNVSRDVH*LPSGTKVAQPPA-VFVRPIRQHLIHHLQTPPKALV 887
A P Q L SVP ++ PSG + PP+ V RP + L PP +
Sbjct: 2768 AQPRQRLLRSRSPASVPAPGSELVPPPSGGALGSPPSFVPSRPPSLEPVPGLPLPPSRVQ 2827
Query: 886 AVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP 743
A P P P P P PA +P +P R P P P
Sbjct: 2828 A-PVDAPAPPPAPERPAPPPAPERP---APPPAPERPAPPPAPERPAP 2871
>gi|4206763|gb|AAD11796.1| (AF104328) cell wall-plasma membrane linker
protein homolog [Arabidopsis thaliana]
Length = 306
Score = 35.6 bits (80), Expect = 1.3
Identities = 39/143 (27%), Positives = 49/143 (33%), Gaps = 10/143 (6%)
Frame = -3
Query: 1171 PHVHPYQQTPLVGHQHSAHA---PQPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSR 1001
P V P+ + P H H P K P P+ S PS S P +
Sbjct: 68 PTVKPHPKPPTKPHPHPKPPIVKPPTKPPPSTPKPPTKPSPSTPKPSTTKPPPSTP---K 124
Query: 1000 DVH*LPSGTKVAQP-----PAVFVRPIRQH--LIHHLQTPPKALVAVPESCAKLQPGPPT 842
H PS T P P V P H + TPP A P P P
Sbjct: 125 PPHHKPSPTPCPPPTPTPTPPVVTPPTPTHPVITPPTPTPPVVTPATPTPPVITPPTPTP 184
Query: 841 PRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQP 743
P +P P +++P + PT P P
Sbjct: 185 PVITPPTPTPPVVTPPTPTPPVVTPPTPTPPTP 217
>gi|4559296|gb|AAD22972.1|AF125671_1 (AF125671) silencing mediator of
retinoic acid and thyroid hormone receptor extended
isoform [Mus musculus]
Length = 2462
Score = 35.2 bits (79), Expect = 1.8
Identities = 39/151 (25%), Positives = 66/151 (42%), Gaps = 9/151 (5%)
Frame = -3
Query: 1075 QVGKRASAALPSQILHVDSVPN----VSRDVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQ 908
+VG+ + A + +SVP+ ++D P+GT+ PA P+
Sbjct: 729 RVGECSGPAAVNNSSDTESVPSPRSEATKDTGPKPTGTEAL--PAATQPPV--------- 777
Query: 907 TPPKALVAVPESCAKLQP--GPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPE-- 740
PP+ A P + + GPP+P PSP+ P PA VD +PQ E
Sbjct: 778 PPPEEPAAAPAEPSPVPDASGPPSPEPSPSPAAP----PATVDKDEQEAPAAPAPQTEDA 833
Query: 739 YDQPYRACHV-LHPRVTPLQHKQWPGPAKTNHRVMNRQQP 623
+Q A + + P ++ P K++H+ ++P
Sbjct: 834 KEQKSEAEEIDVGKPEEPEASEEPPESVKSDHKEETEEEP 873
>gi|6119851|gb|AAF04257.1| (AF139114) subtilisin-like serine
protease [Neospora caninum]
Length = 865
Score = 35.2 bits (79), Expect = 1.8
Identities = 36/131 (27%), Positives = 49/131 (36%), Gaps = 6/131 (4%)
Frame = -3
Query: 985 PSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCA--KLQPGPPTPRPSPAKTQP 812
P G + PP+ PP+A + PES + P P PRP+P + P
Sbjct: 547 PEGRRPGNPPS--------------HPPPEA--SPPESSPPDRQHPHPHPPRPNPPEASP 590
Query: 811 RLLSPAIVDHRHLRLMQPTSPQPEYDQP----YRACHVLHPRVTPLQHKQWPGPAKTNHR 644
SP H H +P P+ +P ++ H PR P PG +
Sbjct: 591 PEPSPPNWQHPHPHPPRPNPPEASPPEPSPPNWQHPHPHPPRPNP------PGASPPESS 644
Query: 643 VMNRQQPWKAL*SPHRP 593
N Q P PH P
Sbjct: 645 PPNWQHP-----HPHPP 656
>gi|2498876|sp|Q51426|RUVB_PSEAE HOLLIDAY JUNCTION DNA HELICASE RUVB
>gi|1183842|dbj|BAA11819| (D83138) Holliday junction
specific DNA helicase [Pseudomonas aeruginosa]
Length = 352
Score = 35.2 bits (79), Expect = 1.8
Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 16 LARKWRPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAK 180
L R RP + A+ +GQ V + + + R L H +F G G+GKTT+A I A+
Sbjct: 20 LDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIF-GPPGLGKTTLANIIAQ 78
Query: 181 SLNCEQGTSADP 216
+ +++ P
Sbjct: 79 EMGVSIKSTSGP 90
>gi|2114323|dbj|BAA20038| (D88734) membrane glycoprotein [Equine
herpesvirus 1]
Length = 867
Score = 35.2 bits (79), Expect = 1.8
Identities = 70/325 (21%), Positives = 115/325 (34%), Gaps = 10/325 (3%)
Frame = -2
Query: 1604 SATERVDCRYSNSGSNAKHRTLFS*ETKAA*AANCLEGPLNSMRSTNASHCPTSVIFPSK 1425
+ TE S SGS ++ ++ N P S +T++S PTS S
Sbjct: 24 TTTETTTSSSSTSGSG---------QSTSSGTTNSSSSPTTSPPTTSSSP-PTSTHTSSP 73
Query: 1424 EPTPTLFTSVVSGTRSIAPSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIG 1245
T T +S + T S APS ST S T T S+ T + ++P
Sbjct: 74 SSTSTQSSSTAA-TSSSAPSTASSTT-SIPTST-STETTTTTPTASTTTPTTTTAAPTTA 130
Query: 1244 GTAIEVCSKADWRSERDWDIVYPLA-PCASLPTDAISG---------ASTLCPCPSAEIR 1095
T V + A +E + P + PT + AST +A
Sbjct: 131 ATTTAVTTAASTSAETTTATATATSTPTTTTPTSTTTTTATTTVPTTASTTTDTTTAATT 190
Query: 1094 SGATTGTGRKASIRSTAISNPTRGLGAKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPS 915
+ ATT + +TA + A + A + TT+ +A T +
Sbjct: 191 TAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATT 250
Query: 914 PANTTEGTSCCT*ILCKASARASNTPPQSGENSAKVAITRNSRSPSPAINAANITST*VR 735
A TT + A+ A+ T + + A T + + + A A T+
Sbjct: 251 TAATTSSATTA------ATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATT 304
Query: 734 STVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPS 630
+ + + T + T A A ++ P+ S
Sbjct: 305 TAATTTAATTTAATTTAATTTAATTTGSPTSGSTS 339
>gi|2137282|pir||I52257 episialin - mouse >gi|199837 (M77226)
episialin [Mus musculus] >gi|199843 (M84683) episialin
[Mus musculus] >gi|608490 (U16175) mucin 1 precursor [Mus
musculus]
Length = 631
Score = 34.8 bits (78), Expect = 2.3
Identities = 63/249 (25%), Positives = 100/249 (39%), Gaps = 1/249 (0%)
Frame = -2
Query: 1370 PSEEESTDCSAHTDTFSS*CGATAVLRNNDDLPIRMSSPPIGGTAIEVCSKADWRSERDW 1191
PSEE S S DT SS T + +++ P + PP T+ V S + R
Sbjct: 25 PSEENSVTSSQ--DTSSSLASTTTPVHSSNSDPA--TRPPGDSTSSPVQSSTSSPATR-- 78
Query: 1190 DIVYPLAPCASLPTDAISGASTLCPCPSAEIRSGATTGTGRKASIRSTAISNPTRGLGAK 1011
AP S T +SG S+ P +A + S ++ S +T++S +
Sbjct: 79 ------APEDSTSTAVLSGTSS--PATTAPVNSASSPVAHGDTSSPATSLSKDSNS---- 126
Query: 1010 CKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQ 831
P++ S T+S +PA T S + ++ ++ + +PP
Sbjct: 127 ----SPVV----HSGTSS-------------APATTAPVDSTSSPVVHGGTSSPATSPPG 165
Query: 830 SGENSAKVAITRNSRSPSPAINAA-NITST*VRSTVPSMSRTAPSRNTPPA*AMAWSSKD 654
+S +S + SPA A + TST V S S + TAP +T A +S
Sbjct: 166 DSTSSPD-----HSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSP 220
Query: 653 KPSRNEPSAA 624
S +E SA+
Sbjct: 221 ATSLSEDSAS 230
>gi|2267235 (U69874) delayed anaerobic 1 [Saccharomyces cerevisiae]
Length = 298
Score = 34.8 bits (78), Expect = 2.3
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = -2
Query: 980 WYQSCTTSGCVCSA--NKATFNPSPANTTEGTSCCT*ILCKASARASNTPPQSGENSAKV 807
WY S G + A N+ PA+TTE +S T A+ +S++ S E S+
Sbjct: 99 WY-STRLMGAISEALANEGIATAVPASTTEASSTSTSEASSAATESSSSSESSAETSSNA 157
Query: 806 AITRNSRSPSPAINAANITST*VRSTVPSMSRTAPS 699
A T+ + S + A+ I S+ S S++ + S
Sbjct: 158 ASTQATVSSESSSAASTIASSAESSVASSVASSVAS 193
>gi|6458143|gb|AAF10038.1|AE001904_14 (AE001904) hypothetical
protein [Deinococcus radiodurans]
Length = 839
Score = 34.8 bits (78), Expect = 2.3
Identities = 32/95 (33%), Positives = 41/95 (42%), Gaps = 3/95 (3%)
Frame = -3
Query: 907 TPPKALVAVPESCAKLQPGPPTPRPSPAKTQPRLLSPAIVDHRHLRLMQPTSPQPEYDQP 728
TPP+ P K P PP P P+PA+ L P + D +P +P+P +P
Sbjct: 117 TPPEPKPETPPEPPKPAPEPPKPDPTPAEP----LKPPVQDTPPPVTPKPVTPEPVTPKP 172
Query: 727 Y-RACHVLHPRV--TPLQHKQWPGPAKTNHRVMNRQQP 623
VL P V TP K P PA T+ QP
Sbjct: 173 APTPPEVLQPPVAQTPPVAKP-PVPAPTSQTPTPPVQP 209
>gi|1220511 (L76606) blackjack [Schistocerca americana]
Length = 1547
Score = 34.8 bits (78), Expect = 2.3
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Frame = -2
Query: 1172 APCASLPTDAISGASTLCPCPSA----EIRSGATTGTGRKASIRST----AISNPTRGLG 1017
AP + PT + P S ++ A T + +I +T ++S PT +
Sbjct: 1263 APTKTSPTSPTKASVPSTPRTSTPKRTQVAPPAAKTTAKTTTITTTTSAKSLSRPTSNVP 1322
Query: 1016 AKCKS*RPLIAIWYQSCTTSGCVCSANKATFNPSPANTTEGTSCCT*ILCKASARASNTP 837
+K S +A QS TT+G V +++ A P P++ T +S + RA++ P
Sbjct: 1323 SKPTS----LATQKQSSTTTGKVPTSSIA---PKPSSKTALSSTTK---PSQTVRAASAP 1372
Query: 836 PQSGENSAKVAITRNSRSPSPAINAANITST*VRSTVPSMSRTAPSRNT 690
++A T+N + +A ++ S + + TAPSR T
Sbjct: 1373 KPRVPSAATTTATKNPLANGDVKSAEVKKTSVATSKIAPRTHTAPSRTT 1421
>gi|6434564|emb|CAB60901.1| (AL132895) predicted using Genefinder;
preliminary prediction [Caenorhabditis elegans]
Length = 769
Score = 34.8 bits (78), Expect = 2.3
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Frame = -3
Query: 1108 QPKSDPVQPQEQVGKRASAALPSQILHVDSVPNVSRDVH*LPSGTKVAQP-PAVFVRPIR 932
QPK+ + Q+Q GK+A A P+ + PN P+ T QP P PI
Sbjct: 59 QPKNK-TKKQQQTGKKAQDAAPAPASAAPAAPNA-------PTPTAQQQPSPKASAAPIP 110
Query: 931 QHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAKTQPR-LLSPAIVDHRHLRLMQPT 755
+ P+ V ES P P P+ K+ P+ S + D +++
Sbjct: 111 E--------KPEIQVQKVESTQASAPIPAPAAPTTQKSSPKERKSVNLKDLDQKKVLNKL 162
Query: 754 SPQPEYDQPY 725
S PE D+ Y
Sbjct: 163 SGLPELDEAY 172
>gi|2078483 (U43200) antifreeze glycopeptide AFGP polyprotein
precursor [Boreogadus saida]
Length = 507
Score = 34.8 bits (78), Expect = 2.3
Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 24/276 (8%)
Frame = -2
Query: 1451 PTSVIFPSKEPTP-TLFTSVVSGTRSIAPSEEES-TDCSAHTDTFSS*CGATAVLRNNDD 1278
P + P+ TP T T+ T + A + + T +A T ++ ATA
Sbjct: 37 PATAATPATAATPATAATAATEATAATAATPATAATPATAATAATTAATAATAATAATPA 96
Query: 1277 LPIRMSSPPIGGTAIEVCSKADWRSERDWDIVYPLAPCASLPTDAISGASTLCPCPSAEI 1098
R ++P T + A + + A A+ T A + A+ +A
Sbjct: 97 RAARAATPATAATPATAATAATAATAATAETPARAATPATAATPA-TAATPATAATAATA 155
Query: 1097 RSGATTGTGRKASIRSTAISNPTRGLGAKC-KS*RPLIAIWYQSCTTSGCVCSANKATFN 921
+ AT T +A+ +TA + T A+ ++ P A + T+ +A A
Sbjct: 156 ATSATAATAARAATPATAATPATPATAARAARAATPATAATAATAATAATAATAATAATA 215
Query: 920 PSPANTTEGTSCCT*-----------ILCKASARASNTPPQSGE-----NSAKVAITRNS 789
+PA + T A+A + TP ++ +A +A
Sbjct: 216 ATPARAARAATPATAPTPATAATPATAATAATAPTAATPARAARAATPATAATLATAATP 275
Query: 788 RSPS-PAINAANITS----T*VRSTVPSMSRTAPSRNTPPA*AMAWSSKDKPSRNEPSAA 624
+P+ PA A + T+ T R+ P+ TA + TP A A ++ + P+ A
Sbjct: 276 ATPATPATAATDATAATAATPARAATPATPATAATPATPATAATAATAATAATAATPARA 335
>gi|138239|sp|P07645|VGLD_PRVRI GLYCOPROTEIN GP50
>gi|73739|pir||VGBE50 glycoprotein D precursor - suid
herpesvirus 1 (strain Rice) >gi|334052 (M14001)
glycoprotein gp50 [Pseudorabies virus]
Length = 402
Score = 34.4 bits (77), Expect = 3.0
Identities = 29/83 (34%), Positives = 36/83 (42%), Gaps = 3/83 (3%)
Frame = -3
Query: 904 PPKALVAVPESCAKLQPGP-PTPRPSPAKTQP--RLLSPAIVDHRHLRLMQPTSPQPEYD 734
P + P + +P P P P P+PA P RL PA DH P P+PE
Sbjct: 259 PARPSAGSPRPRPRPRPRPRPKPEPAPATPAPPDRLPEPATRDHAAGGRPTPRPPRPE-- 316
Query: 733 QPYRACHVLHPRVTPLQHKQWPGPAK 656
P+R P V P WP PA+
Sbjct: 317 TPHRP--FAPPAVVP---SGWPQPAE 337
>gi|3599946 (AF017780) RNA-dependent RNA polymerase [sour cherry green
ring mottle virus]
Length = 2023
Score = 34.4 bits (77), Expect = 3.0
Identities = 17/54 (31%), Positives = 31/54 (56%)
Frame = -2
Query: 233 AVHRPHGSALVPCSQFNDLAKIRAIVVLPTPRVPVNRKA*WRRPLSNALLSART 72
A +PHG++++P ++ND K A +V TP + + + L+N+ LS +T
Sbjct: 1135 AFRQPHGNSIIPEDRYNDFLKSNANIVPFTPSLSI------AKTLANSFLSGQT 1182
>gi|2145025 (AF000227) omega secalin [Secale cereale]
Length = 357
Score = 34.4 bits (77), Expect = 3.0
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 7/145 (4%)
Frame = -3
Query: 1159 PYQQTPLVGHQHSAHAPQPKSDPV--QPQEQVGKRASAALPSQILHVDSVPNV-SRDVH* 989
P Q +PL Q + PQ P QPQ+ + ++ P Q VP R
Sbjct: 204 PQQPSPLQPQQPFSQQPQRPQQPFPQQPQQIIPQQPQQPFPLQ--PQQPVPQQPQRPFGQ 261
Query: 988 LPSGTKVAQPPAVFV----RPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAK 821
P +P F+ +P Q LQ P + + P+ LQP P P+
Sbjct: 262 QPEQIISQRPQQPFLLQPQQPFSQPQQPFLQQPGQIIPQQPQQPFPLQPQQPFPQQPEQI 321
Query: 820 TQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPY 725
+ P ++ + QP P P+ QP+
Sbjct: 322 ISEQPQQPFLLQPQQPSPQQPQLPFPQPQQPF 353
Score = 34.0 bits (76), Expect = 3.9
Identities = 47/184 (25%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Frame = -3
Query: 1171 PHVHPYQQTPLVGHQHSAHAPQPKSDPVQPQE---QVGKRASAALPSQILHVDSVPNVSR 1001
P P Q P Q PQ S P+QPQ+ Q +R P Q + +P +
Sbjct: 184 PFSQPQQPFPQQPEQIIPQQPQQPS-PLQPQQPFSQQPQRPQQPFPQQPQQI--IPQQPQ 240
Query: 1000 DVH*LPSGTKVAQPPAVFVRPIRQHLIHHLQTPPKALVAVPESCAKLQPGPPTPRPSPAK 821
L V Q P RP Q P + + P+ LQP P +P
Sbjct: 241 QPFPLQPQQPVPQQPQ---RPFGQQ-------PEQIISQRPQQPFLLQPQQPFSQPQ--- 287
Query: 820 TQPRLLSPAIVDHRHLRLMQPTSPQPEYDQPYRACHVLHPRVTPLQHKQWPGPAKTNHRV 641
QP L P + + + P PQ + Q P+ L Q P P +
Sbjct: 288 -QPFLQQPGQIIPQQPQQPFPLQPQQPFPQQPEQIISEQPQQPFLLQPQQPSPQQPQLPF 346
Query: 640 MNRQQPW 620
QQP+
Sbjct: 347 PQPQQPF 353
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486933558
Number of Sequences: 443958
Number of extensions: 11625349
Number of successful extensions: 46304
Number of sequences better than 10.0: 736
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 323
Number of HSP's that attempted gapping in prelim test: 45242
Number of HSP's gapped (non-prelim): 969
length of query: 609
length of database: 136,619,797
effective HSP length: 56
effective length of query: 552
effective length of database: 111,758,149
effective search space: 61690498248
effective search space used: 61690498248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 73 (32.8 bits)