BLASTX 2.0.10 [Aug-26-1999]
Query= XF-07G02-GL34
(2592 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|2804528|dbj|BAA24464| (D85082) YfiX [Bacillus subtilis] 224 3e-57
gi|2633167|emb|CAB12672| (Z99108) similar to hypothetical prote... 219 9e-56
gi|6643933|gb|AAF20821.1|AF199025_2 (AF199025) LpiA [Sinorhizob... 138 2e-31
gi|3024904|sp|Q55979|Y712_SYNY3 HYPOTHETICAL 35.1 KD PROTEIN SL... 118 2e-25
gi|3218336|emb|CAA19595| (AL023861) putative integral membrane ... 115 1e-24
gi|1838991|emb|CAB06635| (Z85982) lysX [Mycobacterium tuberculo... 96 2e-18
gi|4808336|emb|CAB42750.1| (AL049841) putative membrane protein... 94 5e-18
gi|3025003|sp|P75770|YBHN_ECOLI HYPOTHETICAL 35.9 KD PROTEIN IN... 83 7e-15
gi|2113903|emb|CAB08896| (Z95554) hypothetical protein Rv1619 [... 75 2e-12
gi|1510108|dbj|BAA02957| (D13800) ORF-1 [Agrobacterium tumefaci... 67 8e-10
gi|540994|pir||A36922 orf1 5'of acvB - Agrobacterium tumefaciens 65 3e-09
gi|2128959|pir||B64499 hypothetical protein MJ1595 - Methanococ... 39 0.17
gi|5835277|gnl|NCBI_MITO|ND2_10917 NADH dehydrogenase subunit 2... 37 0.87
gi|2621439 (AE000823) unknown [Methanobacterium thermoautotroph... 36 1.1
gi|1086828 (U41263) similar to A. faecalis poly(3-hydroxybutyra... 36 1.9
gi|461891|sp|Q02761|CYB_RHOSH CYTOCHROME B >gi|97506|pir||S1386... 35 2.6
gi|6562264|emb|CAB62634.1| (AL132980) putative protein [Arabido... 34 4.4
gi|2055275|dbj|BAA19775| (D85594) Gag protein [Bombyx mori] 34 4.4
gi|5834987|gnl|NCBI_MITO|ATP6_10422 ATP synthase F0 subunit 6 >... 34 7.5
gi|191727 (M96653) adenylyl cyclase, type 6 [Mus musculus] 34 7.5
gi|477557|pir||A49201 type 5 adenylyl cyclase - mouse 34 7.5
gi|1131440|gb|AAC96464.1| (U42580) a96R [Paramecium bursaria Ch... 34 7.5
gi|6671513|ref|NP_031431.1|| adenylate cyclase 6 >gi|231925|sp|... 34 7.5
gi|3877553|emb|CAB07625.1| (Z93383) cDNA EST yk444e9.3 comes fr... 33 9.9
gi|5458515|emb|CAB50003.1| (AJ248286) PURINE-CYTOSINE PERMEASE ... 33 9.9
>gi|2804528|dbj|BAA24464| (D85082) YfiX [Bacillus subtilis]
Length = 610
Score = 224 bits (564), Expect = 3e-57
Identities = 171/596 (28%), Positives = 279/596 (46%), Gaps = 20/596 (3%)
Frame = +1
Query: 775 LISTVPAGLGVFEWSML---KLLPHTPPSVVLAAALAYRITYYLLPTLIALTMAASSGLR 945
+IS VP G G F+ L + L + ++V + L YR+ Y +P ++ L AA
Sbjct: 1 MISLVPGGFGSFDLLFLLGMEQLGYHQEAIVTSIVL-YRLAYSFIPFILGLFFAAGDLTE 59
Query: 946 QPMR------------VSAGTAIAIWKTVRPWVPQ-IIALAVFAIGTILLVDGTLPTPKS 1086
M+ + + + + V + Q ++L VF G I+L +LP +
Sbjct: 60 NTMKRLETNPRIAPAIETTNVLLVVQRAVLVRILQGSLSLIVFVAGLIVLASVSLPIDRL 119
Query: 1087 RQ-EVAPLPLIETSHXXXXXXXXXXXXXXXXXXXXXHSAWLLALGICILLPPLALLRGSH 1263
P P + + ++ +A+ + + L+G +
Sbjct: 120 TVIPHIPRPALLLFNGLSLSSALILLILPIELYKRTKRSYTMAITALVGGFVFSFLKGLN 179
Query: 1264 YSVSLWAGLTAVTLWMARREFYRQSALLDEAWSWRWLSNIGIVIVSTFWLVFFVYSHVE- 1440
S + V L + +++F R+ A ++ + + + + F++ ++
Sbjct: 180 ISAIFVLPMIIVLLVLLKKQFVREQASYTLGQLIFAVALFTVALFNYNLIAGFIWDRMKK 239
Query: 1441 YSNDLWWEFATSGNAPRALRALLLICVCLIVFGMARLLHNARRPFTPASEAELQALLPIL 1620
++ +TS + A++++ + ++F + + H +P ++ E L
Sbjct: 240 VLRHEYFVHSTSHITHATIMAIIIVPLFFLIFTV--VYHKRTKPIGEKADPER---LAAF 294
Query: 1621 ANNKDTKAC--LAMTGDKALLHDPQKRSFVMMQRYGGSLIAMGDPIGPPEASIQLIWRFR 1794
N K A L GDK + ++ + L+ +GDP G E+ ++ F
Sbjct: 295 LNEKGGNALSHLGFLGDKRFYFSSDGNALLLFGKIARRLVVLGDPSGQRESFPLVLEEFL 354
Query: 1795 EVADRLGLRPVFYQVADNYWQNYLDLGMTMVKIGEEAIVDLEKFSLEGSTNAEMRQAFNK 1974
A + G +FYQ+ Y D G K+GEEA VDL F+L G A +R N+
Sbjct: 355 NEAHQKGFSVLFYQIEREDMALYHDFGYNFFKLGEEAYVDLNTFTLTGKKKAGLRAINNR 414
Query: 1975 GKRLGLRFRILSEEEVRALMHRLRQISDEWLEEKGSEEKSFSLGNFDPIYLYRFPVAVIE 2154
+R F + A + L+QISDEWL K +EK FSLG FDP YL + P+A ++
Sbjct: 415 FEREEYTFHVDHPPFSDAFLEELKQISDEWLGSK--KEKGFSLGFFDPSYLQKAPIAYMK 472
Query: 2155 HEAEQKIIAFANILKAQPGSNLSIDLMRYSQDAPNGTMDFLFVAMFLWGKEQGFQRFSLG 2334
+ AE +I+AFAN++ +S+DLMRY DAPNG MD LF+ MFLW KE+G F++G
Sbjct: 473 N-AEGEIVAFANVMPMYQEGEISVDLMRYRGDAPNGIMDALFIRMFLWAKEEGCTSFNMG 531
Query: 2335 MAPLSGLAQHHLAGRWNRFANLIARHGERFYGFSGLRRFKAKFSPNWCPRYLAAPGGMHL 2514
MAPL+ + + RFA +I + Y FSGLR FK K+ P W +YLA L
Sbjct: 532 MAPLANVGTAFTSFWSERFAAVIFNNVRYMYSFSGLRAFKEKYKPEWRGKYLAYRKNRSL 591
Query: 2515 FAALLDVTRLISISPK 2562
+ VTRLI S K
Sbjct: 592 SVTMFLVTRLIGKSKK 607
>gi|2633167|emb|CAB12672| (Z99108) similar to hypothetical proteins
[Bacillus subtilis]
Length = 606
Score = 219 bits (552), Expect = 9e-56
Identities = 168/592 (28%), Positives = 276/592 (46%), Gaps = 20/592 (3%)
Frame = +1
Query: 787 VPAGLGVFEWSML---KLLPHTPPSVVLAAALAYRITYYLLPTLIALTMAASSGLRQPMR 957
+P G G F+ L + L + ++V + L YR+ Y +P ++ L AA M+
Sbjct: 1 MPGGFGSFDLLFLLGMEQLGYHQEAIVTSIVL-YRLAYSFIPFILGLFFAAGDLTENTMK 59
Query: 958 ------------VSAGTAIAIWKTVRPWVPQ-IIALAVFAIGTILLVDGTLPTPKSRQ-E 1095
+ + + + V + Q ++L VF G I+L +LP +
Sbjct: 60 RLETNPRIAPAIETTNVLLVVQRAVLVRILQGSLSLIVFVAGLIVLASVSLPIDRLTVIP 119
Query: 1096 VAPLPLIETSHXXXXXXXXXXXXXXXXXXXXXHSAWLLALGICILLPPLALLRGSHYSVS 1275
P P + + ++ +A+ + + L+G + S
Sbjct: 120 HIPRPALLLFNGLSLSSALILLILPIELYKRTKRSYTMAITALVGGFVFSFLKGLNISAI 179
Query: 1276 LWAGLTAVTLWMARREFYRQSALLDEAWSWRWLSNIGIVIVSTFWLVFFVYSHVE-YSND 1452
+ V L + +++F R+ A ++ + + + + F++ ++
Sbjct: 180 FVLPMIIVLLVLLKKQFVREQASYTLGQLIFAVALFTVALFNYNLIAGFIWDRMKKVLRH 239
Query: 1453 LWWEFATSGNAPRALRALLLICVCLIVFGMARLLHNARRPFTPASEAELQALLPILANNK 1632
++ +TS + A++++ + ++F + + H +P ++ E L N K
Sbjct: 240 EYFVHSTSHITHATIMAIIIVPLFFLIFTV--VYHKRTKPIGEKADPER---LAAFLNEK 294
Query: 1633 DTKAC--LAMTGDKALLHDPQKRSFVMMQRYGGSLIAMGDPIGPPEASIQLIWRFREVAD 1806
A L GDK + ++ + L+ +GDP G E+ ++ F A
Sbjct: 295 GGNALSHLGFLGDKRFYFSSDGNALLLFGKIARRLVVLGDPSGQRESFPLVLEEFLNEAH 354
Query: 1807 RLGLRPVFYQVADNYWQNYLDLGMTMVKIGEEAIVDLEKFSLEGSTNAEMRQAFNKGKRL 1986
+ G +FYQ+ Y D G K+GEEA VDL F+L G A +R N+ +R
Sbjct: 355 QKGFSVLFYQIEREDMALYHDFGYNFFKLGEEAYVDLNTFTLTGKKKAGLRAINNRFERE 414
Query: 1987 GLRFRILSEEEVRALMHRLRQISDEWLEEKGSEEKSFSLGNFDPIYLYRFPVAVIEHEAE 2166
F + A + L+QISDEWL K +EK FSLG FDP YL + P+A +++ AE
Sbjct: 415 EYTFHVDHPPFSDAFLEELKQISDEWLGSK--KEKGFSLGFFDPSYLQKAPIAYMKN-AE 471
Query: 2167 QKIIAFANILKAQPGSNLSIDLMRYSQDAPNGTMDFLFVAMFLWGKEQGFQRFSLGMAPL 2346
+I+AFAN++ +S+DLMRY DAPNG MD LF+ MFLW KE+G F++GMAPL
Sbjct: 472 GEIVAFANVMPMYQEGEISVDLMRYRGDAPNGIMDALFIRMFLWAKEEGCTSFNMGMAPL 531
Query: 2347 SGLAQHHLAGRWNRFANLIARHGERFYGFSGLRRFKAKFSPNWCPRYLAAPGGMHLFAAL 2526
+ + + RFA +I + Y FSGLR FK K+ P W +YLA L +
Sbjct: 532 ANVGTAFTSFWSERFAAVIFNNVRYMYSFSGLRAFKEKYKPEWRGKYLAYRKNRSLSVTM 591
Query: 2527 LDVTRLISISPK 2562
VTRLI S K
Sbjct: 592 FLVTRLIGKSKK 603
>gi|6643933|gb|AAF20821.1|AF199025_2 (AF199025) LpiA [Sinorhizobium
meliloti]
Length = 398
Score = 138 bits (344), Expect = 2e-31
Identities = 103/348 (29%), Positives = 168/348 (47%), Gaps = 13/348 (3%)
Frame = +1
Query: 37 QSGWR----------RAIPVFISLLILGMALHALSGHFTNHGYHQIHLAFKAFTTWQIVL 186
Q+GWR A+ + + + G A+ H T + ++ A T+W+ V
Sbjct: 17 QTGWRLLLRRNQSYLTAVGTLVVIALFGAAIV----HLTAEVRYDDVVSALADTSWRSVA 72
Query: 187 TLVL--GLCSYACLVGFDWIGLQRTGKRPHPARVAITAFLAHTIGQTLGFAALTGGAVRL 360
T + GL S+ L +D L ++ A+VA+TA A+ +G T GF AL+GGA+R
Sbjct: 73 TAIFFTGL-SFLTLTFYDLGALDYIRRKLPYAQVALTAACAYAVGNTAGFGALSGGAIRY 131
Query: 361 RGYSKVGLSLIEIGQIVLMSTLGFIFGAWVXXXXXXXXXXXXXXXXXXXDTLGIRSTGIA 540
R YS++GL +I ++V TL F G D +R+
Sbjct: 132 RSYSRLGLEPDDIARVVAFVTLAFGLGLVAVTCLSLLAVAEYVAPLTRLDAFWLRTIAAV 191
Query: 541 LLAAFLVMLWLVNSNGREFGIGRQRFWIPDRRTVLGVTALSIVELGLACAAFYVLLPSEA 720
+LA L ++ S+ E IGR +P RT ++ ++L + YVLLP+
Sbjct: 192 VLAGMLAIMVAARSS-HEISIGRITLRLPASRTTSRQFLITTLDLAASATVLYVLLPT-G 249
Query: 721 NTSFFGFIGLWLVAVVAGLISTVPAGLGVFEWSMLKLLPHTPP-SVVLAAALAYRITYYL 897
+ F+ ++ VAV G++S VPAGLGVFE ++ L H +L A + YR+ Y+L
Sbjct: 250 TIGWPAFLAIYCVAVGLGVLSHVPAGLGVFETVIVATLGHAADVDAILGALVLYRVIYHL 309
Query: 898 LPTLIALTMAASSGLRQPMRVSAGTAIAIWKTVRPWVPQIIALAVFAIGTILLVDGTLPT 1077
LP LIA+ + +RQ A +++ + P ++A + +L++ PT
Sbjct: 310 LPLLIAIVVIIGIEVRQFTGHPAASSLR--RAGGRMTPLLLATLALVLALMLVLSSVTPT 367
Query: 1078 P 1080
P
Sbjct: 368 P 368
>gi|3024904|sp|Q55979|Y712_SYNY3 HYPOTHETICAL 35.1 KD PROTEIN
SLR0712 >gi|1006605|dbj|BAA10758| (D64005) hypothetical
protein [Synechocystis sp.]
Length = 322
Score = 118 bits (293), Expect = 2e-25
Identities = 81/285 (28%), Positives = 130/285 (45%), Gaps = 1/285 (0%)
Frame = +1
Query: 49 RRAIPVFISLLILGMALHALSGHFTNHGYHQIHLAFKAFTTWQIVLTLVLGLCSYACLVG 228
++ P I + +++ A++ ++G+ + +F+ ++ L L +Y L G
Sbjct: 8 QKIAPAAIGACLFVLSIGAINSELHHYGWQNVLASFQGIVKTRLAGAFALMLINYIILTG 67
Query: 229 FDWIGLQRTGKRPHPARVAITAFLAHTIGQTLGFAALTGGAVRLRGYSKVGLSLIEIGQI 408
+D + + G+ + + F+++ I ++G A L+G A+R R Y +S I Q
Sbjct: 68 YDTLAMFYLGQSLPLTKTSFVGFVSYAISNSVGLALLSGSAIRYRLYQSWQVSAPIIAQA 127
Query: 409 VLMSTLGFIFGAWVXXXXXXXXXXXXXXXXXXXDTLGIRSTGIALLAAFLVMLWLVNSNG 588
+ L F G L + G LA + L + +
Sbjct: 128 IAFCNLSFWVGLLTVGGITFVVDPLQLPAFLHLPFLSVHPIGFTFLAIIGIYLLITGNLI 187
Query: 589 REFGIGRQRFWIPDRRTVLGVTALSIVELGLACAAFYVLLPSEANTSFFGFIGLWLVAVV 768
+ F IG+ + L L+ V+ LA YVLLP + SF GF G++L+A V
Sbjct: 188 KPFKIGQWQTPKIPFAVSLAQIGLTAVDWILASGILYVLLPGHHHLSFPGFFGIYLLAQV 247
Query: 769 AGLISTVPAGLGVFEWSMLKLLPHTPPSV-VLAAALAYRITYYLLP 903
AG+IS VP GLGVFE +L LL SV VL A LAYR+ YY +P
Sbjct: 248 AGIISNVPGGLGVFETVVLFLLTPKYSSVQVLGALLAYRVIYYWIP 293
>gi|3218336|emb|CAA19595| (AL023861) putative integral membrane
protein [Streptomyces coelicolor]
Length = 589
Score = 115 bits (286), Expect = 1e-24
Identities = 100/377 (26%), Positives = 174/377 (45%), Gaps = 7/377 (1%)
Frame = +1
Query: 1441 YSNDLWWEFATSGNAPRALRALLLICVCLIVFGMARLLHNARRPFTPASEAELQALLPIL 1620
Y + + + +T A + + I V L+++ R +RR + +L+ L +L
Sbjct: 198 YDDIPFGDISTPNWANVLINVMSTILVLLVLYAAFR----SRRAIDAMTPEDLRGLRALL 253
Query: 1621 ANN--KDTKACLAMTGDKALLHDPQKRSFVMMQRYGGSLIAMGDPIGPPEASIQLIWRFR 1794
+ +D+ A+ DK+++ P ++ + + G +A GDPIG PEA + I R+
Sbjct: 254 ERHGERDSLGYFALRCDKSVIWSPSGKAAITYRVVSGVSLASGDPIGDPEAWPRAIDRWL 313
Query: 1795 EVADRLGLRPVFYQVADNYWQNYLDLGMTMVKIGEEAIVDLEKFSLEGSTNAEMRQAFNK 1974
A G P ++ Y G+ +++G+EAIVDL +F+LEG +RQA+N+
Sbjct: 314 AQAREYGWAPAVIGASEEGGTVYARHGLNALELGDEAIVDLSEFTLEGRAMRNVRQAYNR 373
Query: 1975 GKRLGLRFRILSEEEVRAL-MHRLRQISDEWLEEKGSEEKSFSLGNF-DPIYLYRFPVAV 2148
+R G I +++ M L ++ DEW + + S +LG DP V
Sbjct: 374 IERAGYSVWIRRHKDIPTQEMADLIRLVDEWRDSESERGFSMALGRLGDPQDGQCVMVLC 433
Query: 2149 IEHEAEQKIIAFANILKAQPGSNLSIDLMRYSQDAPNGTMDFLFVAMFLWGKEQGFQRFS 2328
+ + + +++F LS+DLMR +D+ NG +F+ + + E G ++ S
Sbjct: 434 HDGKRPRGLLSFV----PWGDDGLSLDLMRRDRDSENGLFEFMVLKLIQQAGELGMRQLS 489
Query: 2329 LGMAPLSGLAQHHL---AGRWNRFANLIARHGERFYGFSGLRRFKAKFSPNWCPRYLAAP 2499
L A + + AG R + R++ L R AK+ P W PRYL
Sbjct: 490 LNFAMFRSVFERGSRLGAGPVLRLWRSLLSFFSRWWQIESLYRANAKYRPIWEPRYL--- 546
Query: 2500 GGMHLFAALLDVTRLISISPKRRE 2571
LF D+ R I+++ R E
Sbjct: 547 ----LFEKSADLLR-ITVASARAE 565
>gi|1838991|emb|CAB06635| (Z85982) lysX [Mycobacterium tuberculosis]
Length = 1172
Score = 95.6 bits (234), Expect = 2e-18
Identities = 85/329 (25%), Positives = 146/329 (43%), Gaps = 9/329 (2%)
Frame = +1
Query: 1501 ALLLICVCLIVFGMARLLHNARRPFTPASEAELQALLPILANNKDTKACLAMTGDKALLH 1680
A LI +++F L A T E+ ++ LL + + D+ A DK+++
Sbjct: 279 AFALIGAAIVLF----LSQRADNALTGEDESAIRGLLDLYGKD-DSLGYFATRRDKSVVF 333
Query: 1681 DPQKRSFVMMQRYGGSLIAMGDPIGPPEASIQLIWRFREVADRLGLRPVFYQVADNYWQN 1860
R+ + + G +A GDP+G A Q + + + G P + Q
Sbjct: 334 ASSGRACITYRVEVGVCLASGDPVGDHRAWPQAVDAWLRLCQTYGWAPGVMGASSQGAQT 393
Query: 1861 YLDLGMTMVKIGEEAIVDLEKFSLEGSTNAEMRQAFNKGKRLGLRFRI-----LSEEEVR 2025
Y + G+T +++G+EAI+ F L G +RQA + +R GL RI ++E+E+
Sbjct: 394 YREAGLTALELGDEAILRPADFKLSGPEMRGVRQAVTRARRAGLTVRIRRHRDIAEDEMA 453
Query: 2026 ALMHRLRQISDEWLEEKGSEEKSFSLGNF-DPIYLYRFPVAVIEHEAEQKIIAFANILKA 2202
+ R +D W + + S +LG DP V I + +++A +++
Sbjct: 454 QTITR----ADSWRDTETERGFSMALGRLGDPADSDCLLVEAI--DPHNQVLAMLSLV-P 506
Query: 2203 QPGSNLSIDLMRYSQDAPNGTMDFLFVAMFLWGKEQGFQRFSLGMAPLSGLAQHHL---A 2373
+ +S+DLMR S +PNGT++ + + L + G R SL A + A
Sbjct: 507 WGTTGVSLDLMRRSPQSPNGTIELMVSELALHAESLGITRISLNFAVFRAAFEQGAQLGA 566
Query: 2374 GRWNRFANLIARHGERFYGFSGLRRFKAKFSPNWCPRY 2487
G R + R++ L R K+ P W PRY
Sbjct: 567 GPVARLWRGLLVFFSRWWQLETLYRSNMKYQPEWVPRY 604
>gi|4808336|emb|CAB42750.1| (AL049841) putative membrane protein
[Streptomyces coelicolor]
Length = 601
Score = 94.0 bits (230), Expect = 5e-18
Identities = 121/420 (28%), Positives = 189/420 (44%), Gaps = 57/420 (13%)
Frame = +1
Query: 1231 LPPLALLRGSHYSVSLWAGLTAVTLWMA----RREFYRQSALLDEAWSWRWLSN------ 1380
L PL + Y SL L +V L R EF +AL D WR L+N
Sbjct: 100 LLPLGAVAQFTYRHSLLGVLISVALLFPLLRHRDEF---AALPDPRSRWRALANFVLMSA 156
Query: 1381 ----IGIVIVST------------------FWLVFFVYSHVEYSNDLWWEFATSGNAPRA 1494
+G+++V+ + +F V V+Y + W A S
Sbjct: 157 GSVLLGLLVVNAHPHRMLGDPSLADRITHVLYGLFGVEGPVDYRGNTSWTVAFS------ 210
Query: 1495 LRALLLICVCLIVFGMARLLHNARRPFTPASEAELQALLPILANNKDTKACLAMTGDKAL 1674
L AL L+ ++ R H A R T E L+ALL +D+ A+ DKA+
Sbjct: 211 LGALGLLTAVTTIYLAFRPEHPAAR-LTEDDEIRLRALLA-RHGGRDSLGHFALRRDKAV 268
Query: 1675 LHDPQKRSFVMMQRYGGSLIAMGDPIGPPEASIQLIWRFREVADRLGLRPVFYQVADNYW 1854
+ P ++ V + G ++A GDPIG EA I RF + A P ++
Sbjct: 269 VFSPSGKAAVTYRVVSGVMLASGDPIGDVEAWPGAIERFMDEARAHSWTPAVMGCSETGG 328
Query: 1855 QNYL-DLGMTMVKIGEEAIVDLEKFSLEGSTNAEMRQAFNKGKRLGLRFRILSEEEVR-A 2028
+ + + G+ +++G+EA+VD+ FSL G +RQ + +R G R+ ++ A
Sbjct: 329 EVWTRETGLDALELGDEAVVDVADFSLAGRAMRNVRQMVKRIERAGYETRVRRVADLSDA 388
Query: 2029 LMHRLRQISDEWLEEKGSEEKSFSLGNFDPIYLYRFPVAVIEHEAEQKIIAFANILKAQP 2208
+ R+R+ +D W S +LG V + +IA A+ +P
Sbjct: 389 ELDRVRRAADAWRGTDTERGFSMALGR------------VGDPADGDCLIATAHKQDTEP 436
Query: 2209 GS----------------NLSIDLMRYSQDAPNGTMDFLFVAMFLWGKEQGFQRFSLGMA 2340
G S+DLMR + A G + L VA + G R SL A
Sbjct: 437 GEYGDLKAVLHFVPWGTDGASLDLMRRDRAADPGMNELLIVAALQAAPKLGIARVSLNFA 496
Query: 2341 PL-SGLAQHHLAGR------WNRFANLIARHGERFYGFSGLRRFKAKFSPNWCPRYL 2490
+ LA+ G W ++R ++ L +F AKF P W PR++
Sbjct: 497 MFRAALARGEKIGAGPVLRAWRGLLVFLSR----WFQIESLYKFNAKFRPRWEPRFV 549
>gi|3025003|sp|P75770|YBHN_ECOLI HYPOTHETICAL 35.9 KD PROTEIN IN
MOAE-RHLE INTERGENIC REGION >gi|1787006 (AE000181) orf,
hypothetical protein [Escherichia coli]
>gi|4062345|dbj|BAA35447| (D90716) ORF_ID:o203#10
[Escherichia coli]
Length = 318
Score = 83.5 bits (203), Expect = 7e-15
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 3/243 (1%)
Frame = +1
Query: 190 LVLGLCSYACLVGFDWIGLQRTGKRPHPARVAITAFLAHTIGQTLGFAALTGGAVRLRGY 369
+V+ Y C +D + G + +V + +F+ + TL + G +R R Y
Sbjct: 58 VVVSYLIYGC---YDLLARFYCGHKLAKRQVMLVSFICYAFNLTLS-TWVGGIGMRYRLY 113
Query: 370 SKVGLSLIEIGQIVLMSTLGFIFGAWVXXXXXXXXXXXXXXXXXXXDTLGIRSTGIALLA 549
S++GL I +I +S G + D +R GI LL
Sbjct: 114 SRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLM 173
Query: 550 AFLVMLWLVN-SNGREFGIGRQRFWIPDRRTVLGVTALSIVELGLACAAFYVLLPSEANT 726
V LW + R I Q+ +P + L +S V + A ++LL N
Sbjct: 174 IIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVN- 232
Query: 727 SFFGFIGLWLVAVVAGLISTVPAGLGVFEWSMLKLLP--HTPPSVVLAAALAYRITYYLL 900
+F +G+ LV+ +AG+I +PAG+GV E + LL HT ++AA LAYR+ YY +
Sbjct: 233 -YFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFI 291
Query: 901 PTLIAL 918
P L+AL
Sbjct: 292 PLLLAL 297
>gi|2113903|emb|CAB08896| (Z95554) hypothetical protein Rv1619
[Mycobacterium tuberculosis]
Length = 484
Score = 75.3 bits (182), Expect = 2e-12
Identities = 89/368 (24%), Positives = 151/368 (40%), Gaps = 9/368 (2%)
Frame = +1
Query: 1465 FATSGNAPRALRALLLICVCLIVFGMARLLHNARRPFTPASEAELQALLPILANNKDTKA 1644
F +G A L A LL + + G A + + P P + AL I A D+ A
Sbjct: 114 FLLAGLAAHVLVADLLGEILIAGSGWALMWPTSAHP-RPEDLPRVWAL--INATRADSLA 170
Query: 1645 CLAMTGDKALLHDPQKRSFVMMQRYGGSLIAMGDPIGPPEASIQLIWRFREVADRLGLRP 1824
AM K+ + + + G + GDPIG QL+ F + G R
Sbjct: 171 PFAMQAGKSHHFSAAGTAALAYRTRIGYAVVSGDPIGDEAQFPQLVADFAAMCHMHGWRI 230
Query: 1825 VFYQVADN---YWQNYLDLGMTM--VKIGEEAIVDLEKFSLEGSTNAEMRQAFNKGKRLG 1989
V ++ W + + +G ++ + IG + ++D+ F + G +RQA + G
Sbjct: 231 VVVGCSERRLGLWSDPMVVGQSLRPIPIGRDVVIDVSNFEMTGRRFRNLRQAVKRTHNFG 290
Query: 1990 LRFRILSEEEVRALMHRLRQISDEWLEEKGSE--EKSFSLGNFDPIYLYRFP--VAVIEH 2157
+ I++E+++ R ++++ ++ F + N D + R+P +I
Sbjct: 291 VTTEIVAEQQLDD--QRQAELAEVLAASPSGARTDRGFCM-NLDGVLEGRYPGIQLIIAR 347
Query: 2158 EAEQKIIAFANILKAQPGSNLSIDLMRYSQDAPNGTMDFLFVAMFLWGKEQGFQRFSLGM 2337
+A ++ F A GS++S+D+ + APNG + L M K+ G QR SL
Sbjct: 348 DASGRVQGFHRYATAGGGSDMSLDVPWRRRGAPNGIDERLSADMIAAAKDAGVQRLSLAF 407
Query: 2338 APLSGLAQHHLAGRWNRFANLIARHGERFYGFSGLRRFKAKFSPNWCPRYLAAPGGMHLF 2517
A L + GR R + + L R+ KF RY+ M
Sbjct: 408 AAFPDLFGANQLGRLQRVCRALIHILDPLIALESLYRYLRKFHALDERRYVLI--SMTQV 465
Query: 2518 AALLDVTRLISISPKRR 2568
AL V + P+RR
Sbjct: 466 FALALVLLSLEFVPRRR 482
>gi|1510108|dbj|BAA02957| (D13800) ORF-1 [Agrobacterium tumefaciens]
Length = 156
Score = 66.7 bits (160), Expect = 8e-10
Identities = 34/74 (45%), Positives = 46/74 (61%)
Frame = +1
Query: 2032 MHRLRQISDEWLEEKGSEEKSFSLGNFDPIYLYRFPVAVIEHEAEQKIIAFANILKAQPG 2211
M L+Q+SD WL + EK FSLG F+P Y+ PVAV+ + KI AFAN++ +
Sbjct: 1 MDELQQVSDGWLAHHNTREKRFSLGAFEPDYILSQPVAVLRKDG--KITAFANLMVTETK 58
Query: 2212 SNLSIDLMRYSQDA 2253
+IDLMR+S DA
Sbjct: 59 KEATIDLMRFSADA 72
>gi|540994|pir||A36922 orf1 5'of acvB - Agrobacterium tumefaciens
Length = 156
Score = 64.8 bits (155), Expect = 3e-09
Identities = 32/74 (43%), Positives = 46/74 (61%)
Frame = +1
Query: 2032 MHRLRQISDEWLEEKGSEEKSFSLGNFDPIYLYRFPVAVIEHEAEQKIIAFANILKAQPG 2211
M L+Q+SD WL + EK FSLG F+P Y+ PVAV+ + KI AFAN++ +
Sbjct: 1 MDELQQVSDGWLAHHNTREKRFSLGAFEPDYILSQPVAVLRKDG--KITAFANLMVTETK 58
Query: 2212 SNLSIDLMRYSQDA 2253
+ID++R+S DA
Sbjct: 59 KEATIDMLRFSADA 72
>gi|2128959|pir||B64499 hypothetical protein MJ1595 - Methanococcus
jannaschii >gi|1592205 (U67599) conserved hypothetical
protein [Methanococcus jannaschii]
Length = 336
Score = 39.1 bits (89), Expect = 0.17
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 748 LWLVAVVAGLISTVPAGLGVFEWSMLKLLP--HTPPSVVLAAALAYRITYYLLPTLI 912
++L+ +++G++S P+G G + M+ + PPSV A L R+ Y+LPT++
Sbjct: 262 VYLITLLSGVLSITPSGFGTADTVMILSFSAFNIPPSVAAAVTLLDRLVSYILPTIL 318
>gi|5835277|gnl|NCBI_MITO|ND2_10917 NADH dehydrogenase subunit 2
>gi|462763|sp|P34187|NU2M_CROLA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2 >gi|486793|pir||S35463 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
hillstream loach (Crossostoma lacustre) mitochondrion
(SGC1) >gi|2146916|pir||S60272 hypothetical protein 2 -
hillstream loach (Crossostoma lacustre) mitochondrion
(SGC1) >gi|336705 (M91245) NADH dehydrogenase subunit 2
[Crossostoma lacustre]
Length = 348
Score = 36.7 bits (83), Expect = 0.87
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 5/194 (2%)
Frame = +1
Query: 544 LAAFLVMLWLVNSNGREFGIGRQRFWIPDRRTVLGVTALSIVELGLACAAFYVLLPSEAN 723
LA+ L M+ L + G+ FW+P+ L +T I+ A F ++ N
Sbjct: 93 LASSLTMMALA----LKVGLAPMHFWMPEVLQGLDLTMGLILSTWQKLAPFALITQMAPN 148
Query: 724 TSFFGFIGLWLVAVVAGLISTVPAGLGVFEWSML-KLLPHTPPS----VVLAAALAYRIT 888
T+ ++ GL+ST+ G G + L K+L ++ + +++ ++T
Sbjct: 149 TN-------PMLLTTLGLLSTLIGGWGGLNQTQLRKILAYSSIAHMGWMIIILQYTPQLT 201
Query: 889 YYLLPTLIALTMAASSGLRQPMRVSAGTAIAIWKTVRPWVPQIIALAVFAIGTILLVDGT 1068
L I +T AA L+ T A W + P + AL + ++G + + G
Sbjct: 202 LIALGLYIFMTSAAFLSLKMASATKMNTLTAAW-SKSPVLVSTTALTLLSLGGLPPLTGF 260
Query: 1069 LPTPKSRQEVAPLPLIETS 1125
+P QE+ L T+
Sbjct: 261 MPKWLILQELTKQDLPATA 279
>gi|2621439 (AE000823) unknown [Methanobacterium
thermoautotrophicum]
Length = 334
Score = 36.4 bits (82), Expect = 1.1
Identities = 31/101 (30%), Positives = 53/101 (51%), Gaps = 5/101 (4%)
Frame = +1
Query: 637 TVLGVT-ALSIVELGLACAAFY-VLLPSEANTSFFGFIGLWLVAVVAGLISTVPAGLGVF 810
T LGV LS++ + C Y V + TSF I ++L+A + G++S +P G+G
Sbjct: 214 TSLGVIFILSLLSWLMECLRLYLVFMAFGVETSFSAVIIIFLLANLVGILSALPGGMGSM 273
Query: 811 EWSMLKLLPHTPPSVVLAAALAY---RITYYLLPTLIALTMAASSG 939
E SM L LA ++A I+++++ L A+ + +G
Sbjct: 274 EVSMAGLFVVFGVPGFLAGSIALVDRIISFWMVTALGAIFSSCYAG 319
>gi|1086828 (U41263) similar to A. faecalis poly(3-hydroxybutyrate)
depolymerase (SP:PHB_ALCFA, P12625); similar to zinc
finger protein 40 (SP:ZEP1_HUMAN, P15822)
[Caenorhabditis elegans]
Length = 1777
Score = 35.6 bits (80), Expect = 1.9
Identities = 38/144 (26%), Positives = 62/144 (42%), Gaps = 15/144 (10%)
Frame = -2
Query: 806 TPSPAGTV---DINPATTA--TSHRPMKPKKLVFASDGNST*NAAQARPNSTILSA-VTP 645
TPSP T+ I P+T TS + P + ++ +STI+S +TP
Sbjct: 385 TPSPTTTLLTSTIAPSTQGVPTSSKSSSPNSTPTTTITPGAPSSTLGSSSSTIVSTTITP 444
Query: 644 STVRLSGIQKRCRPMPNSRPLLLTSHN---------ITRNAASKAIPVLRIPXXXXXXXX 492
ST ++S + P P S PL+++S + T +++ +P
Sbjct: 445 STPKVSTLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSN 504
Query: 491 XXXXXXXANAKPSSTQAPNMKPKVLINTIWPISMRLSPT 375
A PS+T A + I + P S SP+
Sbjct: 505 PTTPKSTVTASPSTTGATSTASPSTITSSAPTSQSHSPS 543
>gi|461891|sp|Q02761|CYB_RHOSH CYTOCHROME B >gi|97506|pir||S13869
ubiquinol--cytochrome-c reductase (EC 1.10.2.2)
cytochrome b - Rhodobacter sphaeroides
>gi|46427|emb|CAA39624| (X56157) ubiquinol-cytochrome c
reductase [Rhodobacter sphaeroides]
Length = 445
Score = 35.2 bits (79), Expect = 2.6
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Frame = +1
Query: 724 TSFFGFI------GLWLVAVVAGLISTVPA-GLGVFEWSMLKLLPHTPPSVVLAAALAYR 882
T+F G++ W V+ GL +P G + W + P+V A +
Sbjct: 142 TAFMGYVLPWGQMSFWGATVITGLFGAIPGIGHSIQTWLL------GGPAVDNATLNRFF 195
Query: 883 ITYYLLPTLIALTMAA------SSGLRQP--MRVSAGTAIAIWKTVRPWVPQIIALAVFA 1038
+YLLP +IA +A S+G P + V + K P+ P I VFA
Sbjct: 196 SLHYLLPFVIAALVAIHIWAFHSTGNNNPTGVEVRRTSKAEAQKDTVPFWPYFIIKDVFA 255
Query: 1039 IGTILLV 1059
+ +LLV
Sbjct: 256 LAVVLLV 262
>gi|6562264|emb|CAB62634.1| (AL132980) putative protein [Arabidopsis
thaliana]
Length = 1247
Score = 34.4 bits (77), Expect = 4.4
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +3
Query: 291 RLPRPHNRPDIGLCRTDRWCSA---ATWLQQSGTEPH*NRPNSIDE-HLGLHIWCLGTTG 458
R+ R H D + TD AT L S + P +P+ D G + CL
Sbjct: 706 RIWRAHENQDESVLLTDALAGRFDKATTLPSSSSLPQELKPSPHDSGRTGADVNCLQKNQ 765
Query: 459 LGISTRTRHSDTNTATGHTRDPQHR 533
+ ++T S ++T T H+ DP+ +
Sbjct: 766 MPVNTSATSSSSSTVTAHSNDPKEK 790
>gi|2055275|dbj|BAA19775| (D85594) Gag protein [Bombyx mori]
Length = 712
Score = 34.4 bits (77), Expect = 4.4
Identities = 42/149 (28%), Positives = 53/149 (35%), Gaps = 6/149 (4%)
Frame = -2
Query: 665 ILSAV-TPSTVRLSGIQKRCRPMPNSRPLLLTSHNITRNAASKAIPVLRIPXXXXXXXXX 489
I+ AV T RLSG++ R P P RP L H +R P P
Sbjct: 309 IMRAVGTMLDARLSGLEARLPPEPRMRPPLAADHRRSRGQEKTPTP----PTAAESMPTP 364
Query: 488 XXXXXXANAKPSSTQAPNMK-PKVLINTIWPISMRLSPTLL*PRSRTAPPVSAAKPNVWP 312
A A P+ K PK R P P RT PP AA W
Sbjct: 365 GPTAAVATAAPNGGGPQKKKAPK----------SRQQPAQ--PEPRTFPPAPAALTEAWT 412
Query: 311 IVWARKAVIATRAGCGRL----PVRCKPIQSKPTK 219
V R A T G + P++ K + +P +
Sbjct: 413 TVARRGAKPRTATATGTVSAPPPLKEKKKRLRPPR 447
>gi|5834987|gnl|NCBI_MITO|ATP6_10422 ATP synthase F0 subunit 6
>gi|114468|sp|P00849|ATP6_XENLA ATP SYNTHASE A CHAIN
(PROTEIN 6) >gi|67909|pir||PWXL6 H+-transporting ATP
synthase (EC 3.6.1.34) protein 6 - African clawed frog
mitochondrion (SGC1) >gi|807687 (M10217) ATPase subunit 6
[Xenopus laevis]
Length = 226
Score = 33.6 bits (75), Expect = 7.5
Identities = 38/176 (21%), Positives = 76/176 (42%), Gaps = 17/176 (9%)
Frame = +1
Query: 514 LGIRSTGIALLAAFLVMLWLVNSNGREFGIGRQRFWI-------------PDRRTVLGVT 654
LGI IA+L F ++ W + SNG + + W P + L +T
Sbjct: 15 LGIPLIAIAMLDPFTLISWPIQSNGFNNRLITLQSWFLHNFTTIFYQLTSPGHKWALLLT 74
Query: 655 ALSIVELGLACAAF--YVLLPSEANTSFFGF-IGLWLVAVVAGLISTVPAGLGVFEWSML 825
+L ++ + L Y P+ + G + LWL V+ T +++
Sbjct: 75 SLMLLLMSLNLLGLLPYTFTPTTQLSLNMGLAVPLWLATVIMASKPT--------NYALG 126
Query: 826 KLLPH-TPPSVVLAAALAYRITYYLLPTLIALTMAASSGLRQPMRVSAGTAIAIWKTVRP 1002
LLP TP ++ + I+ ++ P + + + A+ + TA + ++ P
Sbjct: 127 HLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLSIMP 186
Query: 1003 WVPQIIALAVFAI 1041
V + ++ +F +
Sbjct: 187 TVAILTSIVLFLL 199
>gi|191727 (M96653) adenylyl cyclase, type 6 [Mus musculus]
Length = 1155
Score = 33.6 bits (75), Expect = 7.5
Identities = 29/88 (32%), Positives = 42/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 679 LACAA-FYVLLPSEANTSFFGFIGLWLVA-VVAGLISTVPAGLGVFEWSMLKLLPHTPPS 852
L CA+ +V+L N F +W+V+ VV G+++ V G L PH+P +
Sbjct: 176 LTCASVLFVVLMVVCNRHSFRQDSMWVVSYVVLGILAAVQVG------GALAANPHSPSA 229
Query: 853 VVLAAALAYRITYYLLPTLIALTMAASSGL 942
+ ITY LLP I + A SGL
Sbjct: 230 GLWCPVFFVYITYTLLP--IRMRAAVLSGL 257
>gi|477557|pir||A49201 type 5 adenylyl cyclase - mouse
Length = 1166
Score = 33.6 bits (75), Expect = 7.5
Identities = 29/88 (32%), Positives = 42/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 679 LACAA-FYVLLPSEANTSFFGFIGLWLVA-VVAGLISTVPAGLGVFEWSMLKLLPHTPPS 852
L CA+ +V+L N F +W+V+ VV G+++ V G L PH+P +
Sbjct: 182 LTCASVLFVVLMVVCNRHSFRQDSMWVVSYVVLGILAAVQVG------GALAANPHSPSA 235
Query: 853 VVLAAALAYRITYYLLPTLIALTMAASSGL 942
+ ITY LLP I + A SGL
Sbjct: 236 GLWCPVFFVYITYTLLP--IRMRAAVLSGL 263
>gi|1131440|gb|AAC96464.1| (U42580) a96R [Paramecium bursaria
Chlorella virus 1]
Length = 67
Score = 33.6 bits (75), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +1
Query: 1300 TLWMARREFYRQSALLDEAWSWRW 1371
+LW RR F A +++ WSWRW
Sbjct: 39 SLWFKRRRFVNIRAFVNKGWSWRW 62
>gi|6671513|ref|NP_031431.1|| adenylate cyclase 6
>gi|231925|sp|Q01341|CYA6_MOUSE ADENYLATE CYCLASE, TYPE
VI (ATP PYROPHOSPHATE-LYASE) (CA(2+)-INHIBITABLE
ADENYLYL CYCLASE) >gi|476873|pir||A46187 adenylate
cyclase (EC 4.6.1.1) type V, calcium-inhibitable - human
>gi|191691 (M93422) adenylyl cyclase type VI [Mus
musculus]
Length = 1165
Score = 33.6 bits (75), Expect = 7.5
Identities = 29/88 (32%), Positives = 42/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 679 LACAA-FYVLLPSEANTSFFGFIGLWLVA-VVAGLISTVPAGLGVFEWSMLKLLPHTPPS 852
L CA+ +V+L N F +W+V+ VV G+++ V G L PH+P +
Sbjct: 182 LTCASVLFVVLMVVCNRHSFRQDSMWVVSYVVLGILAAVQVG------GALAANPHSPSA 235
Query: 853 VVLAAALAYRITYYLLPTLIALTMAASSGL 942
+ ITY LLP I + A SGL
Sbjct: 236 GLWCPVFFVYITYTLLP--IRMRAAVLSGL 263
>gi|3877553|emb|CAB07625.1| (Z93383) cDNA EST yk444e9.3 comes from
this gene; cDNA EST yk558b12.3 comes from this gene
[Caenorhabditis elegans]
Length = 309
Score = 33.2 bits (74), Expect = 9.9
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 1852 WQNYLDLGMTMVKIGEEAIVDLEKFSLEGSTNAEMRQA----FNKGKRLGLRFRILSEEE 2019
W +Y+D MT+++ + ++ FS T+ R A + K KR+ L+ +L EE+
Sbjct: 151 WNSYVDDVMTILRCCDSEVLKDIGFSCSDMTDQFPRIAQLDQYKKAKRIRLKHFVLKEEQ 210
Query: 2020 VRALMH 2037
+ L H
Sbjct: 211 IENLFH 216
>gi|5458515|emb|CAB50003.1| (AJ248286) PURINE-CYTOSINE PERMEASE
related [Pyrococcus abyssi]
Length = 414
Score = 33.2 bits (74), Expect = 9.9
Identities = 17/46 (36%), Positives = 30/46 (64%), Gaps = 8/46 (17%)
Frame = +1
Query: 1342 LLDEAWS------WRWLSNIGIVI--VSTFWLVFFVYSHVEYSNDLWWEFATSG 1479
+L AW+ WRWL + +V+ V + WL++ ++S +S +LW + T G
Sbjct: 131 ILVTAWTIVGPERWRWLEKLSVVLLGVLSVWLLYVIFSKYSFS-ELWNKPGTGG 183
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 682799326
Number of Sequences: 443958
Number of extensions: 15638223
Number of successful extensions: 48957
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 48917
Number of HSP's gapped (non-prelim): 34
length of query: 864
length of database: 136,619,797
effective HSP length: 57
effective length of query: 806
effective length of database: 111,314,191
effective search space: 89719237946
effective search space used: 89719237946
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 74 (33.2 bits)