BLASTX 2.0.10 [Aug-26-1999]
Query= XF-07C09-GL13
(774 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|5514776|emb|CAB50778.1| (X74218) TolQ protein [Pseudomonas p... 187 1e-46
gi|135982|sp|P05828|TOLQ_ECOLI TOLQ PROTEIN >gi|73121|pir||BVEC... 186 2e-46
gi|1729993|sp|P50598|TOLQ_PSEAE TOLQ PROTEIN >gi|1103860|gb|AAC... 185 3e-46
gi|1174730|sp|P43768|TOLQ_HAEIN TOLQ PROTEIN >gi|1074927|pir||I... 172 3e-42
gi|2126344|pir||PC4258 tolQ protein - Haemophilus influenzae (f... 167 1e-40
gi|3860870|emb|CAA14770| (AJ235271) TOLQ PROTEIN (tolQ) [Ricket... 131 7e-30
gi|6118339|gb|AAF04083.1|AF190125_2 (AF190125) ExbB [Pseudomona... 98 1e-19
gi|3916254|gb|AAC78851.1| (AF087669) ExbB [Bordetella bronchise... 89 3e-17
gi|3913614|sp|O34260|EXBB_XANCP BIOPOLYMER TRANSPORT EXBB PROTE... 87 2e-16
gi|5777376|emb|CAB53384.1| (AJ132741) ExbB protein [Bordetella ... 87 2e-16
gi|4127364|emb|CAA76936| (Y17916) TolQ protein [Actinobacillus ... 77 1e-13
gi|3913626|sp|P95375|EXBB_NEIME BIOPOLYMER TRANSPORT EXBB PROTE... 77 2e-13
gi|3913608|sp|O06433|EXBB_NEIGO BIOPOLYMER TRANSPORT EXBB PROTE... 77 2e-13
gi|585111|sp|Q05605|EXBB_PSEPU BIOPOLYMER TRANSPORT EXBB PROTEI... 76 2e-13
gi|3913615|sp|O51808|EXBB_HAEDU BIOPOLYMER TRANSPORT EXBB PROTE... 75 7e-13
gi|3913621|sp|P72202|EXBB_PASHA BIOPOLYMER TRANSPORT EXBB PROTE... 73 2e-12
gi|3913602|sp|O25986|EXB2_HELPY PUTATIVE BIOPOLYMER TRANSPORT E... 71 1e-11
gi|4155948 (AE001556) BIOPOLYMER TRANSPORT PROTEIN [Helicobacte... 71 1e-11
gi|73122|pir||BVECXB exbB protein - Escherichia coli >gi|145868... 71 1e-11
gi|1706725|sp|P18783|EXBB_ECOLI BIOPOLYMER TRANSPORT EXBB PROTE... 71 1e-11
gi|1169576|sp|P43008|EXBB_HAEIN BIOPOLYMER TRANSPORT EXBB PROTE... 69 5e-11
gi|4155859 (AE001549) BIOPOLYMER TRANSPORT PROTEIN [Helicobacte... 68 7e-11
gi|3913611|sp|O25897|EXBB_HELPY BIOPOLYMER TRANSPORT EXBB PROTE... 68 7e-11
gi|1128979 (M16489) ORF 4; putative [Escherichia coli] 66 3e-10
gi|555671 (U08209) exbB [Haemophilus influenzae] 65 8e-10
gi|5531413|emb|CAB50918.1| (AJ243354) hypothetical protein [Pse... 63 2e-09
gi|3913619|sp|O67637|EXBB_AQUAE BIOPOLYMER TRANSPORT EXBB PROTE... 62 5e-09
gi|6458137|gb|AAF10032.1|AE001904_8 (AE001904) biopolymer trans... 60 3e-08
gi|3913601|sp|O25755|EXB1_HELPY PUTATIVE BIOPOLYMER TRANSPORT E... 58 8e-08
gi|4155649 (AE001533) BIOPOLYMER TRANSPORT PROTEIN [Helicobacte... 58 8e-08
gi|2984223 (AE000766) TolQ homolog [Aquifex aeolicus] 57 2e-07
gi|4377094|gb|AAD18923| (AE001659) Macromolecule transporter [C... 57 2e-07
gi|3915401|sp|O27101|YA22_METTH PUTATIVE BIOPOLYMER TRANSPORT P... 55 7e-07
gi|3329040|gb|AAC68198.1| (AE001330) polysaccharide transporter... 52 5e-06
gi|3811311 (AF047974) TolR [Vibrio cholerae] 50 2e-05
gi|3913607|sp|Q55834|EXB1_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT E... 49 5e-05
gi|3913623|sp|P72604|EXB3_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT E... 48 9e-05
gi|5106982|gb|AAD39910.1|AF119047_3 (AF119047) ExbB-like protei... 46 3e-04
gi|3024163|sp|P56426|MOTA_HELPY CHEMOTAXIS MOTA PROTEIN (MOTILI... 36 0.29
gi|3983101 (AF096835) pancreatic eukaryotic initiation factor 2... 35 0.85
gi|4981199|gb|AAD35759.1|AE001740_5 (AE001740) motility protein... 33 2.5
gi|1673627 (U77310) porcupine [Drosophila melanogaster] 33 3.3
gi|2367390 (U82512) random slug cDNA21 protein [Dictyostelium d... 33 3.3
gi|3915766|sp|Q44902|MOTA_BORBU CHEMOTAXIS MOTA PROTEIN (MOTILI... 33 3.3
gi|1185053 (L75945) flagellar motor apparatus [Borrelia burgdor... 33 3.3
gi|1172774|sp|P45174|PUTP_HAEIN SODIUM/PROLINE SYMPORTER (PROLI... 32 7.4
gi|5174563|ref|NP_006072.1|| MHC binding factor, beta >gi|54281... 31 9.7
gi|3342382 (AF059678) VIP-receptor-gene repressor protein [Ratt... 31 9.7
>gi|5514776|emb|CAB50778.1| (X74218) TolQ protein [Pseudomonas
putida]
Length = 231
Score = 187 bits (469), Expect = 1e-46
Identities = 100/218 (45%), Positives = 132/218 (59%)
Frame = +1
Query: 118 LMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS 297
L+ AS+ V++++ S TSW++IF+++ + + R D FE RFWSG DLSKLY
Sbjct: 14 LVSNASVVVQLVMLTLVAASVTSWIMIFQRSTMLRAGRRALDAFEERFWSGIDLSKLYRQ 73
Query: 298 TNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLE 477
S SG+E + DP +EG R MR RE ++LE++L
Sbjct: 74 AGSNPDPDSGVEQVFRAGFKEFSRLRQQPGVDPDAVMEGVGRAMRVAISREEEKLEQSLP 133
Query: 478 LLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIP 657
LA +GST+PY+GL GTV+GIM + + +S QA +A VAPGI+EAL ATA+GLF AIP
Sbjct: 134 FLATVGSTSPYIGLFGTVWGIMNSFRGL-ASAQQATLATVAPGIAEALIATAIGLFAAIP 192
Query: 658 AVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVGIDE 771
AV AYNRF R E L RY TFA+EF AIL R+V E
Sbjct: 193 AVIAYNRFAARSEVLIGRYYTFADEFQAILHRKVHTSE 230
>gi|135982|sp|P05828|TOLQ_ECOLI TOLQ PROTEIN >gi|73121|pir||BVECTQ
tolQ protein - Escherichia coli >gi|1128978 (M16489) ORF
2; putative [Escherichia coli] >gi|1651329|dbj|BAA35403|
(D90713) TolQ protein. [Escherichia coli] >gi|1786958
(AE000177) inner membrane protein, membrane-spanning,
maintains integrity of cell envelope; tolerance to group
A colicins [Escherichia coli]
Length = 230
Score = 186 bits (468), Expect = 2e-46
Identities = 98/218 (44%), Positives = 134/218 (60%), Gaps = 2/218 (0%)
Frame = +1
Query: 103 INYIDLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLS 282
+N +DL LKAS+ VK+I+ S SW II ++ R+ A REA+ FE++FWSG +LS
Sbjct: 4 MNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELS 63
Query: 283 KLYASTNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQL 462
+LY + ++ ++G E I P +EGA R MR + RE++ L
Sbjct: 64 RLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENL 123
Query: 463 ERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSG--DQAGIAAVAPGISEALFATAV 636
E ++ L +GS +PY+GL GTV+GIM H I+ G QA + VAPGI+EAL ATA+
Sbjct: 124 ETHIPFLGTVGSISPYIGLFGTVWGIM---HAFIALGAVKQATLQMVAPGIAEALIATAI 180
Query: 637 GLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 756
GLF AIPAV AYNR RV +L + Y+ F EEF+AIL RQ
Sbjct: 181 GLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQ 220
>gi|1729993|sp|P50598|TOLQ_PSEAE TOLQ PROTEIN
>gi|1103860|gb|AAC44658.1| (U39558) TolQ [Pseudomonas
aeruginosa]
Length = 231
Score = 185 bits (466), Expect = 3e-46
Identities = 101/214 (47%), Positives = 130/214 (60%)
Frame = +1
Query: 118 LMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS 297
L+ ASI V++++ S TSW++IF++ + A + D FE RFWSG DLSKLY
Sbjct: 14 LISNASIVVQLVMLTLVAASVTSWIMIFQRGNAMRAAKKALDAFEERFWSGIDLSKLYRQ 73
Query: 298 TNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLE 477
S SG+E I DP +EG R MR RE ++LE +L
Sbjct: 74 AGSNPDPDSGVEQIFRAGFKEFSRLRQQPGVDPDAVMEGVARAMRVAISREEEKLEASLP 133
Query: 478 LLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIP 657
LA +GST+PYVGL GTV+GIM + + ++ QA +A VAPGI+EAL ATA+GLF AIP
Sbjct: 134 FLATVGSTSPYVGLFGTVWGIMNSFRGL-ATVQQATLATVAPGIAEALIATAIGLFAAIP 192
Query: 658 AVWAYNRFTTRVERLSVRYETFAEEFSAILQRQV 759
AV AYNRF+ R E L RY TFA+EF AIL R+V
Sbjct: 193 AVIAYNRFSARSEMLIGRYYTFADEFQAILHRKV 226
>gi|1174730|sp|P43768|TOLQ_HAEIN TOLQ PROTEIN
>gi|1074927|pir||I64064 inner membrane protein (tolQ)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573355 (U32722) colicin transport protein (tolQ)
[Haemophilus influenzae Rd]
Length = 228
Score = 172 bits (432), Expect = 3e-42
Identities = 92/218 (42%), Positives = 127/218 (58%)
Frame = +1
Query: 103 INYIDLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLS 282
+N++DL LKASI V++++ S SW II +++R+ A +EA FE+RFWSG DL+
Sbjct: 5 LNFLDLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEARTFEDRFWSGEDLN 64
Query: 283 KLYASTNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQL 462
KLY ++R+ ++G E I P I+G R M RE++ L
Sbjct: 65 KLYEGLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNREIESL 124
Query: 463 ERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGL 642
E + LA + S +PY+GL GTV+GIM +S QA + VAPGI+EAL ATA+GL
Sbjct: 125 ENRVPFLATVASVSPYIGLFGTVWGIMHAFM-ALSGAKQATLQMVAPGIAEALIATAIGL 183
Query: 643 FVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 756
F AIPAV AYNR + RV + Y F +EF+ IL RQ
Sbjct: 184 FAAIPAVMAYNRLSLRVNAIEQDYGNFIDEFTTILHRQ 221
>gi|2126344|pir||PC4258 tolQ protein - Haemophilus influenzae
(fragment) >gi|1685077 (U32470) TolQ [Haemophilus
influenzae]
Length = 220
Score = 167 bits (418), Expect = 1e-40
Identities = 91/214 (42%), Positives = 123/214 (56%)
Frame = +1
Query: 115 DLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYA 294
DL LKASI V++++ S SW II +++R+ A +EA FE+RFWSG DL+KLY
Sbjct: 1 DLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEAHTFEDRFWSGEDLNKLYE 60
Query: 295 STNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNL 474
++R+ ++G E I P I+G R M RE++ LE +
Sbjct: 61 GLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTTRAMNLAMNREIESLENRV 120
Query: 475 ELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAI 654
LA + S +PY+GL GTV+GIM +S QA + VAPGI+EAL ATA+GLF AI
Sbjct: 121 PFLATVASVSPYIGLFGTVWGIMHAFM-ALSGAKQATLQMVAPGIAEALVATAIGLFAAI 179
Query: 655 PAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 756
PAV AYNR + RV + Y F +EF+ IL RQ
Sbjct: 180 PAVMAYNRLSLRVNAIEQDYVNFIDEFTTILHRQ 213
>gi|3860870|emb|CAA14770| (AJ235271) TOLQ PROTEIN (tolQ) [Rickettsia
prowazekii]
Length = 241
Score = 131 bits (326), Expect = 7e-30
Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 3/219 (1%)
Frame = +1
Query: 103 INYIDLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLS 282
++ + L+ A I K ++ S SW II K Q R FEN FWSG L
Sbjct: 19 LSILSLISSADIIGKSVMLMLLFASIWSWSIILHKIFRLAQVQRRIQSFENVFWSGCVLE 78
Query: 283 KLYASTNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFM---REM 453
+LY S K V+ A+ ++ +R+M ++ RE+
Sbjct: 79 QLYESI---KKSVNNPLALIFVSAMNECNSLNTKGFSEALKNNHKERIMSAMYLAQNREI 135
Query: 454 DQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATA 633
++LE+NL +LA IGS+AP++GL GTV+GIM + I+S +A VAPGI+EAL ATA
Sbjct: 136 EKLEQNLNVLATIGSSAPFIGLFGTVWGIMHSFQS-IASSKNTSLAVVAPGIAEALLATA 194
Query: 634 VGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQV 759
+GLFVAIPAV YN +R+ ++ + E F E ++IL + +
Sbjct: 195 IGLFVAIPAVIFYNYLISRITLINNKIEDFISELNSILSKAI 236
>gi|6118339|gb|AAF04083.1|AF190125_2 (AF190125) ExbB [Pseudomonas
aeruginosa]
Length = 239
Score = 97.5 bits (239), Expect = 1e-19
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 1/193 (0%)
Frame = +1
Query: 175 SFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSRKHMVSGLEAIXXXXX 354
S +W + K F + R+ QF+ +FWS T L A ++ +G
Sbjct: 23 SVVTWGLALVKGVQFARQKRQDRQFQKQFWSATSLDS--AGEQAQDKQGAGARVAQAGFA 80
Query: 355 XXXXXXXXXXXXDPRIQIEGA-QRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTV 531
I + +R +R RE LE L +LA+IGST+P++GL GTV
Sbjct: 81 AIQVQDNGQPDLAQSINHQDRLERALRQQIQRERRSLESGLAVLASIGSTSPFIGLFGTV 140
Query: 532 FGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVR 711
+GIM + IS+ A + VA I AL AT VG+ VA+PAV YN F R++ +
Sbjct: 141 WGIMEALKG-ISAAGSASLETVAGPIGSALIATGVGIAVAVPAVLVYNYFLRRLKLTAAD 199
Query: 712 YETFAEEFSAILQR 753
+ FA +F ++ Q+
Sbjct: 200 LDDFAHDFYSLAQK 213
>gi|3916254|gb|AAC78851.1| (AF087669) ExbB [Bordetella
bronchiseptica]
Length = 314
Score = 89.3 bits (218), Expect = 3e-17
Identities = 77/251 (30%), Positives = 114/251 (44%), Gaps = 15/251 (5%)
Frame = +1
Query: 19 ALQDTVEALPQDITGVAAQALTGTAHG---------GINYIDLMLKASIPVKIIVXXXXX 171
A Q EAL Q AAQAL+ A + ++ + ++ K +
Sbjct: 42 AAQTGTEALNQ-----AAQALSAAAPAVPPAPLATPDMGFLHFVAQSDFVGKTLFVILIV 96
Query: 172 GSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS--TNSRKHMVSGLEAIXX 345
S +W +I KA + A F N+FW+ + L ++ T+ + S L +
Sbjct: 97 MSLVTWYLIVVKAVGNMGMRKRAAHFLNKFWNASSLEQVENEIVTHGARDPFSHLASHAM 156
Query: 346 XXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVG 525
+ E R MR E +LE L +LA++GSTAP+VGL G
Sbjct: 157 HAQQHHAKFGATKLEESGSNGEFVSRTMRKVIDEETAKLENGLTVLASVGSTAPFVGLFG 216
Query: 526 TVFGIMVTMHDMISSG--DQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVER 699
TV+G+ H ++ G D I +A + EAL T +GL VAIPAV AYN F
Sbjct: 217 TVWGV---YHALVGIGLSDGVTINRIAGPVGEALIMTGLGLAVAIPAVLAYNAFVRNNRV 273
Query: 700 LSVRYETFAEEFSAILQ--RQVGIDE 771
R + FA + A L +QV + +
Sbjct: 274 FLSRLDAFAHDLFAFLTTGQQVAVSD 299
>gi|3913614|sp|O34260|EXBB_XANCP BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2632265|emb|CAB08609| (Z95386) exbB [Xanthomonas
campestris]
Length = 253
Score = 87.0 bits (212), Expect = 2e-16
Identities = 60/195 (30%), Positives = 96/195 (48%), Gaps = 4/195 (2%)
Frame = +1
Query: 148 IIVXXXXXGSFTSW----VIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSRKH 315
+++ S SW + IFR R+ A+R F + + + + S
Sbjct: 44 VVLITLIAMSAASWYWTVINIFRATRLKSAADRVTTAFWDAPNAQDAIRAMEEQPASEPF 103
Query: 316 MVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLELLANIG 495
L+A + + E R +R RE +L+ + LLA +G
Sbjct: 104 SKIALDAAQARAHHQRAEGSTGGMGESLSRSEFVDRALRQAVTRESTKLQSGMTLLATVG 163
Query: 496 STAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYN 675
+TAP+VGL+GTV+GI + + ++G A I AVA + EAL TA+GLFVAIPAV+A+N
Sbjct: 164 ATAPFVGLLGTVWGIYGALIKIGATGS-ASIDAVAGPVGEALIMTAIGLFVAIPAVFAFN 222
Query: 676 RFTTRVERLSVRYETFAEE 732
F+ + +++TFA +
Sbjct: 223 FFSKVNSSVIAKFDTFAHD 241
>gi|5777376|emb|CAB53384.1| (AJ132741) ExbB protein [Bordetella
pertussis]
Length = 325
Score = 87.0 bits (212), Expect = 2e-16
Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 21/251 (8%)
Frame = +1
Query: 19 ALQDTVEALPQ------DITGVAAQALTGTAHG---------GINYIDLMLKASIPVKII 153
A Q EAL Q + AAQAL+ A + ++ + ++ K +
Sbjct: 42 AAQTGAEALNQAAQAGTEAVNQAAQALSAAAPAVPPAPLATPDMGFLHFVAQSDFVGKTL 101
Query: 154 VXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS--TNSRKHMVSG 327
S +W +I K + A F N+FW+ + L ++ T+ + S
Sbjct: 102 FIILIVMSLVTWYLIVVKVVGNMGMRKRAAHFLNKFWNASSLEQVENEIVTHGARDPFSH 161
Query: 328 LEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLELLANIGSTAP 507
L + + E R MR E +LE L +LA++GSTAP
Sbjct: 162 LASHAMHAQQHHAKFGATKLEESGSNGEFVSRTMRKVIDEETAKLENGLTVLASVGSTAP 221
Query: 508 YVGLVGTVFGIMVTMHDMISSG--DQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRF 681
+VGL GTV+G+ H ++ G D I +A + EAL T +GL VAIPAV AYN F
Sbjct: 222 FVGLFGTVWGV---YHALVGIGLSDGVTINRIAGPVGEALIMTGLGLAVAIPAVLAYNAF 278
Query: 682 TTRVERLSVRYETFAEEFSAILQ--RQVGIDE 771
R + FA + A L +QV + +
Sbjct: 279 VRNNRVFLSRLDAFAHDLFAFLTTGQQVAVSD 310
>gi|4127364|emb|CAA76936| (Y17916) TolQ protein [Actinobacillus
pleuropneumoniae]
Length = 222
Score = 77.3 bits (187), Expect = 1e-13
Identities = 46/112 (41%), Positives = 62/112 (55%)
Frame = +1
Query: 427 MRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPG 606
+R + + + + L LA+IG+ AP++GL GTV+GI + D+ G Q IA V+
Sbjct: 109 LRNAITQSLRKYDGGLVALASIGAVAPFIGLFGTVWGIFNALMDISQQG-QVSIATVSAP 167
Query: 607 ISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVG 762
I EAL ATA+GLFVAIPAV AYN LS + +A E L G
Sbjct: 168 IGEALVATAMGLFVAIPAVLAYNLIARLNRNLSQDLDHYANELFIYLLHHYG 219
>gi|3913626|sp|P95375|EXBB_NEIME BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|1732297 (U77738) ExbB [Neisseria meningitidis]
Length = 220
Score = 76.9 bits (186), Expect = 2e-13
Identities = 47/110 (42%), Positives = 65/110 (58%)
Frame = +1
Query: 427 MRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPG 606
+R + + M + + + LA+IG+TAP++GL GTV+GI + ++ SG Q IAAVA
Sbjct: 109 IRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSG-QMSIAAVAGP 167
Query: 607 ISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 756
I EAL ATA GLFVAIPAV AYN + L+ + A + L Q
Sbjct: 168 IGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>gi|3913608|sp|O06433|EXBB_NEIGO BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2098622 (U79563) ExbB [Neisseria gonorrhoeae]
Length = 220
Score = 76.9 bits (186), Expect = 2e-13
Identities = 47/110 (42%), Positives = 65/110 (58%)
Frame = +1
Query: 427 MRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPG 606
+R + + M + + + LA+IG+TAP++GL GTV+GI + ++ SG Q IAAVA
Sbjct: 109 IRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSG-QMSIAAVAGP 167
Query: 607 ISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 756
I EAL ATA GLFVAIPAV AYN + L+ + A + L Q
Sbjct: 168 IGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>gi|585111|sp|Q05605|EXBB_PSEPU BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|320395|pir||S28442 exbB protein - Pseudomonas putida
>gi|49193|emb|CAA49714| (X70139) inner-membrane protein
ExbB [Pseudomonas putida]
Length = 329
Score = 76.5 bits (185), Expect = 2e-13
Identities = 72/226 (31%), Positives = 103/226 (44%), Gaps = 5/226 (2%)
Frame = +1
Query: 16 LALQDTVEALPQDITGVAAQALTGTAHGGINYIDLMLKASIPVKIIVXXXXXGSFTSWVI 195
+A+ VEAL +D T G AH ++ + A I VKI++ S +W I
Sbjct: 80 VAVDPGVEALVEDTT-------LGMAHD-LSPWGMYKNADIVVKIVMIGLAIASIITWTI 131
Query: 196 IFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSRKHM-VSGLEAIXXXXXXXXXXX 372
K A R ++++L S + ++ VS E
Sbjct: 132 WIAKGFELMGAKRRLRG---------EIAQLKKSASLKEASEVSNKEGTLAHTLVHDALE 182
Query: 373 XXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLE----LLANIGSTAPYVGLVGTVFGI 540
+ R + EG + + R + RN+ +LA IGSTAP+VGL GTV+GI
Sbjct: 183 EMRLSANTR-EKEGIKERVAFRLERLVAASGRNMSSGTGVLATIGSTAPFVGLFGTVWGI 241
Query: 541 MVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRV 693
M + I+ +A VAPGI+EAL ATA+GL AIPAV YN F +
Sbjct: 242 MNSFIG-IAKTQTTNLAVVAPGIAEALLATALGLVAAIPAVVIYNVFARSI 291
>gi|3913615|sp|O51808|EXBB_HAEDU BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2843112 (AF001034) ExbB [Haemophilus ducreyi]
Length = 150
Score = 74.9 bits (181), Expect = 7e-13
Identities = 37/86 (43%), Positives = 57/86 (66%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 639
L RNL ++ IG+ APYVGL+GTV GI++T + + SG + A++ +S AL ATA G
Sbjct: 56 LTRNLTTISTIGANAPYVGLLGTVLGILLTFYHLGHSGGEIDAASIMVHLSLALKATAAG 115
Query: 640 LFVAIPAVWAYNRFTTRVERLSVRYE 717
+ VAIPA+ Y+ F +VE ++++
Sbjct: 116 ILVAIPAMMFYSGFNRKVEENKLKWQ 141
>gi|3913621|sp|P72202|EXBB_PASHA BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|1575389 (U62565) ExbB [Pasteurella haemolytica]
Length = 152
Score = 73.4 bits (177), Expect = 2e-12
Identities = 41/106 (38%), Positives = 63/106 (58%), Gaps = 1/106 (0%)
Frame = +1
Query: 397 RIQIEGAQRVMRTNFMREMD-QLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSG 573
RI + + + + E+D L NL ++ IGS APY+GL+GTV GI++T + + SG
Sbjct: 34 RIMFYSKVDISKYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSG 93
Query: 574 DQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRY 714
A++ +S AL ATAVG+ VAI A+ YN F +VE +++
Sbjct: 94 GDIDAASIMVNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKW 140
>gi|3913602|sp|O25986|EXB2_HELPY PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 2 >gi|2314617|gb|AAD08483.1|
(AE000644) biopolymer transport protein (exbB)
[Helicobacter pylori 26695]
Length = 150
Score = 71.0 bits (171), Expect = 1e-11
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGI--AAVAPGISEALFATA 633
L + L L+A IGS APY+GL+GTV GIM+T D+ G +GI A+ ++ AL AT
Sbjct: 49 LHKRLTLVATIGSNAPYIGLLGTVMGIMLTFMDL---GSASGIDTKAIMTNLALALKATG 105
Query: 634 VGLFVAIPAVWAYNRFTTRVERLSVRYETF 723
+GL VAIPA+ YN + E L +++ F
Sbjct: 106 MGLLVAIPAIVIYNLLVRKSEILVTKWDIF 135
>gi|4155948 (AE001556) BIOPOLYMER TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 150
Score = 71.0 bits (171), Expect = 1e-11
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGI--AAVAPGISEALFATA 633
L + L L+A IGS APY+GL+GTV GIM+T D+ G +GI A+ ++ AL AT
Sbjct: 49 LHKRLTLVATIGSNAPYIGLLGTVMGIMLTFMDL---GSASGIDTKAIMTNLALALKATG 105
Query: 634 VGLFVAIPAVWAYNRFTTRVERLSVRYETF 723
+GL VAIPA+ YN + E L +++ F
Sbjct: 106 MGLLVAIPAIVIYNLLVRKSEILVTKWDIF 135
>gi|73122|pir||BVECXB exbB protein - Escherichia coli >gi|145868
(M28819) exbB peptide [Escherichia coli]
Length = 244
Score = 70.6 bits (170), Expect = 1e-11
Identities = 58/188 (30%), Positives = 82/188 (42%), Gaps = 6/188 (3%)
Frame = +1
Query: 130 ASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSR 309
A I VK ++ S +W I F K+ F R + + L N
Sbjct: 19 ADIVVKCVMIGLILASVVTWAIFFSKSVEFFNLKRRLKREQQLLAEARSL-------NQA 71
Query: 310 KHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMD------QLERN 471
+ + + + EG + RT+F E Q+ R
Sbjct: 72 NDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKE--RTSFRLERRVAAVGRQMGRG 129
Query: 472 LELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVA 651
LA IG+ +P+VGL GTV+GIM + I+ +A VAPGI+EAL ATA+GL A
Sbjct: 130 NGYLATIGAISPFVGLFGTVWGIMNSFIG-IAQTQTTNLAVVAPGIAEALLATAIGLVAA 188
Query: 652 IPAVWAYNRFTTRV 693
IPAV YN F ++
Sbjct: 189 IPAVVIYNVFARQI 202
>gi|1706725|sp|P18783|EXBB_ECOLI BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|882535 (U28377) exbB gene product [Escherichia coli]
>gi|1789381 (AE000383) uptake of enterochelin;
tonB-dependent uptake of B colicins [Escherichia coli]
Length = 244
Score = 70.6 bits (170), Expect = 1e-11
Identities = 58/188 (30%), Positives = 82/188 (42%), Gaps = 6/188 (3%)
Frame = +1
Query: 130 ASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSR 309
A I VK ++ S +W I F K+ F R + + L N
Sbjct: 19 ADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSL-------NQA 71
Query: 310 KHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMD------QLERN 471
+ + + + EG + RT+F E Q+ R
Sbjct: 72 NDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKE--RTSFRLERRVAAVGRQMGRG 129
Query: 472 LELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVA 651
LA IG+ +P+VGL GTV+GIM + I+ +A VAPGI+EAL ATA+GL A
Sbjct: 130 NGYLATIGAISPFVGLFGTVWGIMNSFIG-IAQTQTTNLAVVAPGIAEALLATAIGLVAA 188
Query: 652 IPAVWAYNRFTTRV 693
IPAV YN F ++
Sbjct: 189 IPAVVIYNVFARQI 202
>gi|1169576|sp|P43008|EXBB_HAEIN BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|1073903|pir||H64057 biopolymer transport protein
(exbB) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573219 (U32711) biopolymer transport protein (exbB)
[Haemophilus influenzae Rd]
Length = 150
Score = 68.7 bits (165), Expect = 5e-11
Identities = 34/91 (37%), Positives = 58/91 (63%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 639
L RN+ +++ IG+ APYVGL+GTV GI++T + + G + + +S AL ATA+G
Sbjct: 56 LNRNMTVISTIGANAPYVGLLGTVIGILLTFYQIGHGGGDIDPSVIMLHLSLALKATALG 115
Query: 640 LFVAIPAVWAYNRFTTRVERLSVRYETFAEE 732
+ VAIP++ YN +VE ++++ +E+
Sbjct: 116 ILVAIPSMVFYNGLGRKVEVNRLKWKVLSEQ 146
>gi|4155859 (AE001549) BIOPOLYMER TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 145
Score = 68.3 bits (164), Expect = 7e-11
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 639
L +NL +L I S APYVGL+GTV GIMV +DM SG + G+S AL ATA+G
Sbjct: 57 LTKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGM-DAKTIMVGLSLALKATALG 115
Query: 640 LFVAIPAVWAYNRFTTRVERLSVRY 714
L VAIP + AYN + + LS ++
Sbjct: 116 LAVAIPTLIAYNSLLRKSDVLSEKF 140
>gi|3913611|sp|O25897|EXBB_HELPY BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2314506|gb|AAD08381.1| (AE000635) biopolymer
transport protein (exbB) [Helicobacter pylori 26695]
Length = 166
Score = 68.3 bits (164), Expect = 7e-11
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 639
L +NL +L I S APYVGL+GTV GIMV +DM SG + G+S AL ATA+G
Sbjct: 78 LTKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGM-DAKTIMVGLSLALKATALG 136
Query: 640 LFVAIPAVWAYNRFTTRVERLSVRY 714
L VAIP + AYN + + LS ++
Sbjct: 137 LAVAIPTLIAYNSLLRKSDVLSEKF 161
>gi|1128979 (M16489) ORF 4; putative [Escherichia coli]
Length = 190
Score = 66.3 bits (159), Expect = 3e-10
Identities = 50/188 (26%), Positives = 78/188 (40%)
Frame = -1
Query: 750 LQDSAEFLGKSFITHRKTLYTSGKTVVSPHRRNRNKQTNCGSKQRFGNTRGNRSNTCLIA 571
+Q+ + K + + +Y + VV + R+ KQTNC QRF +T N CL
Sbjct: 1 MQNRGKLFHKVVVIQFQFVYALVEAVVGHNCRDSGKQTNCSRNQRFCDTGRNHLQCCLFY 60
Query: 570 TTDHVMHSDHDPKHRTDQTNVRCSGTDVCQQLQVPF*LIHLAHEVSAHHPLSTFYLDAWI 391
+ HDP RT QTN+R G + ++ V F + H F+
Sbjct: 61 RPEG-DKGVHDPPDRTKQTNIRADGANRTEERNVRFQIFKFTVHGDTHSTRRPFHYGFRR 119
Query: 390 ESTTLPQAREFPEAAFKDGFQSTDHVFTTVRGSIQLTEVSPRPKTIFKLIGLTVGLLKYP 211
+ QA + E A KD F+++ + + I+ E RP+ IFK G +K
Sbjct: 120 MAIGTMQAHKLFEPAVKDLFRTSQIIPFPLALLIEAREFDSRPEFIFKRFGFARRCVKNT 179
Query: 210 CLAKDNHP 187
+N P
Sbjct: 180 GPLDNNGP 187
>gi|555671 (U08209) exbB [Haemophilus influenzae]
Length = 150
Score = 64.8 bits (155), Expect = 8e-10
Identities = 33/91 (36%), Positives = 56/91 (61%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 639
L N+ +++ IG+ APYVGL+GTV GI++T + + G + + +S AL ATA+G
Sbjct: 56 LNSNMTVISTIGANAPYVGLLGTVIGILLTFYQIGHGGGDIDPSEIMLHLSLALKATALG 115
Query: 640 LFVAIPAVWAYNRFTTRVERLSVRYETFAEE 732
+ VAIP++ YN +VE ++++ E+
Sbjct: 116 ILVAIPSMVFYNGLGRKVEVNRLKWKVLNEQ 146
>gi|5531413|emb|CAB50918.1| (AJ243354) hypothetical protein
[Pseudomonas stutzeri]
Length = 199
Score = 63.2 bits (151), Expect = 2e-09
Identities = 40/108 (37%), Positives = 56/108 (51%)
Frame = +1
Query: 445 REMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALF 624
R + LER L L I AP +GL+GTV G++ + SG A +A GIS+AL
Sbjct: 87 RVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGSG-MANAPLLAGGISKALI 145
Query: 625 ATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVGID 768
TA GL V IPA++ + RV+ L V E A + ++Q +D
Sbjct: 146 TTAAGLMVGIPALFFHRFLLRRVDELVVGMEQEAIKLVEVVQGDRDVD 193
>gi|3913619|sp|O67637|EXBB_AQUAE BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2984051 (AE000754) biopolymer transport exbB
[Aquifex aeolicus]
Length = 148
Score = 62.1 bits (148), Expect = 5e-09
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = +1
Query: 457 QLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAV 636
+L + L ++A + S APYVGL+GTV GI++T + +I + G++ AL ATA+
Sbjct: 52 ELTKRLYIIATVASNAPYVGLLGTVLGILLTFY-IIGEKGIVNTKEIMVGLALALKATAL 110
Query: 637 GLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSA 741
GL VAIP+ YN +V + +E E S+
Sbjct: 111 GLIVAIPSTILYNFLVRKVREKLLDWEAIHGECSS 145
>gi|6458137|gb|AAF10032.1|AE001904_8 (AE001904) biopolymer transport
protein, putative [Deinococcus radiodurans]
Length = 230
Score = 59.7 bits (142), Expect = 3e-08
Identities = 41/119 (34%), Positives = 57/119 (47%)
Frame = +1
Query: 409 EGAQRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGI 588
E AQ M ++E ++ L L AP +GL+GTV G MV + S+ +
Sbjct: 90 EAAQAAMNAALIQEDGRMYAGLSALGTAAQIAPLLGLLGTVVG-MVRSFLVFSATNNPTP 148
Query: 589 AAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVGI 765
+A GISEAL TA GL VAI A A N + ++ + E EE + L R V +
Sbjct: 149 TELAQGISEALINTAAGLIVAIVAYVARNALRNKANAVAAQAERVREELPSWLLRPVAV 207
>gi|3913601|sp|O25755|EXB1_HELPY PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 1 >gi|2314281|gb|AAD08172.1|
(AE000619) biopolymer transport protein (exbB)
[Helicobacter pylori 26695]
Length = 189
Score = 58.2 bits (138), Expect = 8e-08
Identities = 36/86 (41%), Positives = 50/86 (57%)
Frame = +1
Query: 451 MDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFAT 630
+ Q L +L+ I STAP++GL GTV I+ +++ + G QA +AP IS+AL AT
Sbjct: 92 LKQSTTGLVVLSIISSTAPFIGLFGTVVEILEAFNNLGTLG-QASFGVIAPIISKALIAT 150
Query: 631 AVGLFVAIPAVWAYNRFTTRVERLSV 708
A G+ AIPA Y +V LSV
Sbjct: 151 AAGILAAIPAYSFYLILKRKVYDLSV 176
>gi|4155649 (AE001533) BIOPOLYMER TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 189
Score = 58.2 bits (138), Expect = 8e-08
Identities = 36/86 (41%), Positives = 50/86 (57%)
Frame = +1
Query: 451 MDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFAT 630
+ Q L +L+ I STAP++GL GTV I+ +++ + G QA +AP IS+AL AT
Sbjct: 92 LKQSTTGLVVLSIISSTAPFIGLFGTVVEILEAFNNLGALG-QASFGVIAPIISKALIAT 150
Query: 631 AVGLFVAIPAVWAYNRFTTRVERLSV 708
A G+ AIPA Y +V LSV
Sbjct: 151 AAGILAAIPAYSFYLILKRKVYDLSV 176
>gi|2984223 (AE000766) TolQ homolog [Aquifex aeolicus]
Length = 204
Score = 57.0 bits (135), Expect = 2e-07
Identities = 31/84 (36%), Positives = 46/84 (53%)
Frame = +1
Query: 421 RVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVA 600
R+M + ++E+NL +L+ S AP +GL GT+ G++ + + +A
Sbjct: 95 RLMEEELSALVPKIEKNLPILSTTASVAPLLGLFGTITGLIKVFQAYAITTQGEAMNLLA 154
Query: 601 PGISEALFATAVGLFVAIPAVWAY 672
GISE L A A GL VAIPA+ AY
Sbjct: 155 KGISEVLVAAATGLGVAIPALLAY 178
>gi|4377094|gb|AAD18923| (AE001659) Macromolecule transporter
[Chlamydia pneumoniae]
Length = 232
Score = 56.6 bits (134), Expect = 2e-07
Identities = 33/72 (45%), Positives = 49/72 (67%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 639
L +N + A S AP++GL+GTV+GI+V ISSG +G +A+ G++ AL T +G
Sbjct: 130 LHKNSFIPATTISLAPFLGLLGTVWGILVAFTH-ISSGS-SGNSAIMEGLATALGTTIIG 187
Query: 640 LFVAIPAVWAYN 675
LFVAIP++ A+N
Sbjct: 188 LFVAIPSLIAFN 199
>gi|3915401|sp|O27101|YA22_METTH PUTATIVE BIOPOLYMER TRANSPORT
PROTEIN EXBB HOMOLOG >gi|2622125 (AE000875) biopolymer
transport protein [Methanobacterium thermoautotrophicum]
Length = 279
Score = 55.0 bits (130), Expect = 7e-07
Identities = 39/100 (39%), Positives = 52/100 (52%)
Frame = +1
Query: 397 RIQIEGAQRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGD 576
R ++E A M F+ EM + R L L I AP +GL+GTV GI T + G
Sbjct: 98 RSEVEDA---MERVFIVEMSNMTRGLGTLRTIIEVAPMLGLIGTVIGIWYTFRAL---GV 151
Query: 577 QAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVE 696
A AA+A GI AL T +GL VAI + Y+ T R++
Sbjct: 152 NADPAAMAEGIYVALITTILGLAVAIILMPLYSYITGRID 191
>gi|3329040|gb|AAC68198.1| (AE001330) polysaccharide transporter
[Chlamydia trachomatis]
Length = 232
Score = 52.3 bits (123), Expect = 5e-06
Identities = 34/89 (38%), Positives = 52/89 (58%)
Frame = +1
Query: 460 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 639
L +N + A S AP++GL+GTV+GI++ IS+G QA + G++ AL T VG
Sbjct: 130 LNKNNFIPATTISLAPFLGLLGTVWGILLAFAH-ISTG-QANGTIMMEGLATALGTTIVG 187
Query: 640 LFVAIPAVWAYNRFTTRVERLSVRYETFA 726
LFVAIP++ +N ++S+ E A
Sbjct: 188 LFVAIPSLVGFNYLRAHAFQVSLEIEQTA 216
>gi|3811311 (AF047974) TolR [Vibrio cholerae]
Length = 457
Score = 50.4 bits (118), Expect = 2e-05
Identities = 30/85 (35%), Positives = 46/85 (53%)
Frame = +1
Query: 448 EMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFA 627
E + LE L +L + + AP +GL+GTV G++ T + G+ +A GIS AL
Sbjct: 341 EQNHLETGLSMLKLLAALAPMLGLLGTVTGMIETFQVITQFGN-GDPKVMAGGISMALVT 399
Query: 628 TAVGLFVAIPAVWAYNRFTTRVERL 702
T GL AIP + A+N + + E +
Sbjct: 400 TVEGLIAAIPLLLAHNILSAQAEAI 424
>gi|3913607|sp|Q55834|EXB1_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 1 >gi|1001752|dbj|BAA10590| (D64004)
hypothetical protein [Synechocystis sp.]
Length = 254
Score = 48.8 bits (114), Expect = 5e-05
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Frame = +1
Query: 445 REMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMI--SSGDQAGIAAVAPGISEA 618
+E ++ R +LL I + AP +GL+GTV G++ T +++ G A A GI EA
Sbjct: 129 KEFARMRRGDKLLETIIALAPLLGLLGTVTGLIRTFNNLNIGGGGSSAEATQAASGIGEA 188
Query: 619 LFATAVGLFVAIPAVWAY 672
L TA G+ VAI A+ +
Sbjct: 189 LITTAAGMMVAIFALLVF 206
>gi|3913623|sp|P72604|EXB3_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 3 >gi|1651676|dbj|BAA16604| (D90899)
biopolymer transport ExbB protein [Synechocystis sp.]
Length = 210
Score = 48.0 bits (112), Expect = 9e-05
Identities = 30/78 (38%), Positives = 44/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 448 EMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDM-ISSGDQAGIAAVAPGISEALF 624
E+ L+R L I + +P +GL+GT+ G+M + M + S A + V GISEAL
Sbjct: 94 ELPLLKRFNTLFQTIITVSPLLGLLGTILGLMRSFSSMSLGSTTAANASGVTGGISEALV 153
Query: 625 ATAVGLFVAIPAVWAYNRF 681
+T +GL VAI + N F
Sbjct: 154 STVMGLVVAIATLLFANVF 172
>gi|5106982|gb|AAD39910.1|AF119047_3 (AF119047) ExbB-like protein
[Vibrio parahaemolyticus]
Length = 231
Score = 46.1 bits (107), Expect = 3e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +1
Query: 457 QLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAV 636
QL L LL IG +P +GL+GTV G++ + S +A G+ A+ TA
Sbjct: 108 QLHSGLRLLTLIGVISPLIGLLGTVLGLIEMFKGIAVSTGNITPNDLADGLGLAMRTTAA 167
Query: 637 GLFVAIPAV 663
GL +A+PA+
Sbjct: 168 GLIIALPAI 176
>gi|3024163|sp|P56426|MOTA_HELPY CHEMOTAXIS MOTA PROTEIN (MOTILITY
PROTEIN A) >gi|2313947|gb|AAD07864.1| (AE000593)
flagellar motor rotation protein (motA) [Helicobacter
pylori 26695] >gi|4155315 (AE001506) putative CHEMOTAXIS
PROTEIN (MOTILITY PROTEIN A) [Helicobacter pylori J99]
Length = 257
Score = 36.4 bits (82), Expect = 0.29
Identities = 26/91 (28%), Positives = 45/91 (48%)
Frame = +1
Query: 493 GSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAY 672
G TAP +GLVG V G+M+ + + + A +A GI+ A AT G+ + +Y
Sbjct: 150 GETAPTMGLVGAVMGLMLALQKLDNP------AEMAAGIAGAFTATVTGI------MCSY 197
Query: 673 NRFTTRVERLSVRYETFAEEFSAILQRQVGI 765
F +L + + +E + +L+ +GI
Sbjct: 198 AIFGPFGHKLKAKSKDIIKEKTVLLEGILGI 228
>gi|3983101 (AF096835) pancreatic eukaryotic initiation factor 2
alpha-subunit kinase [Rattus norvegicus]
Length = 1108
Score = 34.8 bits (78), Expect = 0.85
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 24/116 (20%)
Frame = -1
Query: 666 PHRRNRNKQTNCGSKQRFGNTRGNRSNTCLIATTDHVMHSDHDPKHRTDQTNVRCSG--- 496
PHR+ + +T C ++ ++ + + S+ + + + HS + ++ TD ++C G
Sbjct: 540 PHRQRKESETQCQTESKYDSVSADNSDN----SWNDIKHSGYVSRYLTDFEPIQCMGRGG 595
Query: 495 ----------TDVC----QQLQVPF*LI---HLAHEVSA----HHPLSTFYLDAWIESTT 379
D C +++++P + + EV A HP Y +AW+E+
Sbjct: 596 FGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPP 655
Query: 378 LPQAREFPEAAFKDGFQSTD 319
E E KD +STD
Sbjct: 656 EKWQEEMDEIWLKD--ESTD 673
>gi|4981199|gb|AAD35759.1|AE001740_5 (AE001740) motility protein A
[Thermotoga maritima]
Length = 262
Score = 33.2 bits (74), Expect = 2.5
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +1
Query: 397 RIQIEGAQRVMRTNFMR-EMDQLERNLE----LLANIGSTAPYVGLVGTVFGIMVTMHDM 561
++ ++G + N M EM+ E L+ +L + G+ AP G++GT+ G ++ M
Sbjct: 113 QLVVDGTDPDLLRNMMETEMELFEEELDGERAVLESAGAYAPAFGMIGTLIG-LIQMLKS 171
Query: 562 ISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSA 741
++ + G P ++ AL T G A+ A F E++ R + E
Sbjct: 172 LNDPETLG-----PSMAVALITTLYG------AILANGVFLPMAEKIKKRRDILVLEKRM 220
Query: 742 ILQRQVGI 765
IL+ + I
Sbjct: 221 ILEAVLSI 228
>gi|1673627 (U77310) porcupine [Drosophila melanogaster]
Length = 525
Score = 32.8 bits (73), Expect = 3.3
Identities = 25/74 (33%), Positives = 39/74 (51%)
Frame = +2
Query: 503 HLTLVWSVRCLGSWSLCMT*SVVAIKQVLLRLPLVFPKRCLLPQLVCLLRFRRCGLTTVL 682
H L + R L S C+ SV+ + Q + + L+ CLL +L+CLL +R LT++
Sbjct: 59 HGVLELAGRLLESLQSCVQPSVLQVMQYVAPMLLL----CLLCRLLCLLYSQRRRLTSLA 114
Query: 683 PLV*SVFLCVMKLL 724
PL F C + +L
Sbjct: 115 PLHLFHFACGLIIL 128
>gi|2367390 (U82512) random slug cDNA21 protein [Dictyostelium
discoideum]
Length = 515
Score = 32.8 bits (73), Expect = 3.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 675 VVSPHRRNR-NKQTNCGSKQRFGNTRGNRSNTCLIATTDHVMHSDHDPKHRTDQTN 511
+V+PH R T+ S + N G+ N+ + T + HS H+ H++DQ N
Sbjct: 158 MVTPHHRTSFGHITSANSDETTNNESGSPINSRKMVTDEEDPHSSHNEDHQSDQDN 213
>gi|3915766|sp|Q44902|MOTA_BORBU CHEMOTAXIS MOTA PROTEIN (MOTILITY
PROTEIN A) >gi|1165266 (U43739) MotA [Borrelia
burgdorferi] >gi|2688185 (AE001137) flagellar motor
rotation protein A (motA) [Borrelia burgdorferi]
Length = 260
Score = 32.8 bits (73), Expect = 3.3
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Frame = +1
Query: 397 RIQIEGAQ-RVMRTNFMREMDQLERNLELLANIGST----APYVGLVGTVFGIMVTMHDM 561
R+ ++GA V+RT E+DQ++ ++ +++ T AP G+ GT+ G++ +
Sbjct: 113 RLVVDGADPEVIRTMLYLELDQMQERHKVGSDLFKTWAKLAPAFGMTGTLIGLVALL--- 169
Query: 562 ISSGDQAGIAAVAPGISEALFATAVGLFVA 651
G+ +A+ ++ AL T G +A
Sbjct: 170 ---GNLEDKSALGSSMAVALITTLYGTIMA 196
>gi|1185053 (L75945) flagellar motor apparatus [Borrelia
burgdorferi]
Length = 260
Score = 32.8 bits (73), Expect = 3.3
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Frame = +1
Query: 397 RIQIEGAQ-RVMRTNFMREMDQLERNLELLANIGST----APYVGLVGTVFGIMVTMHDM 561
R+ ++GA V+RT E+DQ++ ++ +++ T AP G+ GT+ G++ +
Sbjct: 113 RLVVDGADPEVIRTMLYLELDQMQERHKVGSDLFKTSRKLAPAFGMTGTLIGLVALL--- 169
Query: 562 ISSGDQAGIAAVAPGISEALFATAVGLFVA 651
G+ +A+ ++ AL T G +A
Sbjct: 170 ---GNLEDKSALGSSMAVALITTLYGTIMA 196
>gi|1172774|sp|P45174|PUTP_HAEIN SODIUM/PROLINE SYMPORTER (PROLINE
PERMEASE) >gi|1075316|pir||E64118 sodium/proline
symporter (proline permease) (putP) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1574814
(U32814) sodium/proline symporter (proline permease)
(putP) [Haemophilus influenzae Rd]
Length = 504
Score = 31.7 bits (70), Expect = 7.4
Identities = 15/43 (34%), Positives = 27/43 (61%), Gaps = 4/43 (9%)
Frame = +1
Query: 172 GSFTSWVIIFRKARVFKQANREA----DQFENRFWSGTDLSKLYAST 300
G++ +W+++ + RV+ + N A + F NRF S L KL ++T
Sbjct: 85 GAYFNWLLVAGRLRVYTELNNNALTLPEYFHNRFGSSHKLLKLVSAT 131
>gi|5174563|ref|NP_006072.1|| MHC binding factor, beta
>gi|542814|pir||S40236 fetal beta-MHC-binding factor -
human >gi|438047|emb|CAA53517| (X75917) fetal beta-MHC
binding factor [Homo sapiens]
Length = 398
Score = 31.3 bits (69), Expect = 9.7
Identities = 16/54 (29%), Positives = 30/54 (54%), Gaps = 5/54 (9%)
Frame = -1
Query: 204 AKDNHPASE*AKQQQQHNN-----FDGNTGFEHEIDIVDPPVRCSRECLSCYPGDVLRQ 43
AK N+P E A + +QHN +D ++ E + + + + + +SC PG + R+
Sbjct: 43 AKVNNPCKEDASRPKQHNKKKRIIYDSDSESEETVQVKNAKKKSEKLPVSCKPGKISRK 101
>gi|3342382 (AF059678) VIP-receptor-gene repressor protein [Rattus
norvegicus]
Length = 656
Score = 31.3 bits (69), Expect = 9.7
Identities = 16/54 (29%), Positives = 30/54 (54%), Gaps = 5/54 (9%)
Frame = -1
Query: 204 AKDNHPASE*AKQQQQHNN-----FDGNTGFEHEIDIVDPPVRCSRECLSCYPGDVLRQ 43
AK N+P E A + +QHN +D ++ E + + + + + +SC PG + R+
Sbjct: 43 AKVNNPCKEDASRPKQHNKKKRIIYDSDSESEETVQVKNAKKKSEKLPVSCKPGKISRK 101
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203358014
Number of Sequences: 443958
Number of extensions: 4360496
Number of successful extensions: 13795
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13719
Number of HSP's gapped (non-prelim): 51
length of query: 258
length of database: 136,619,797
effective HSP length: 54
effective length of query: 203
effective length of database: 112,646,065
effective search space: 22867151195
effective search space used: 22867151195
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)