BLASTX 2.0.10 [Aug-26-1999]
Query= XF-07C04-GL66
(195 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|476532|pir||QRXLL2 LDL receptor 2 precursor - African clawed... 31 1.8
gi|114244|sp|P15803|AS30_HUMAN ADRENAL SPECIFIC 30 KD PROTEIN (... 30 2.4
gi|3877738|emb|CAA98949.1| (Z74473) predicted using Genefinder ... 30 2.4
gi|2135396|pir||S71548 homeotic protein pG2 - human 30 2.4
gi|547838|sp|Q99087|LDL1_XENLA LOW-DENSITY LIPOPROTEIN RECEPTOR... 29 5.3
gi|476531|pir||QRXLL1 LDL receptor 1 precursor - African clawed... 29 5.3
gi|3875594|emb|CAA94585.1| (Z70682) Similarity to Rabbit UDP-gl... 29 5.3
gi|2276127|dbj|BAA21556| (D88585) hepatitis A virus receptor [C... 29 6.9
gi|2338422 (AF012536) decoy receptor 1 [Homo sapiens] >gi|23384... 29 6.9
gi|2529565|gb|AAB81181| (AF016267) TRAIL receptor 3 [Homo sapiens] 29 6.9
gi|6329749|dbj|BAA86439.1| (AB032951) KIAA1125 protein [Homo sa... 29 6.9
gi|2443820|gb|AAB71413| (AF020502) cytotoxic TRAIL receptor-3 [... 29 6.9
gi|3986192|dbj|BAA34953| (AB015466) growth-blocking peptide [Sp... 29 6.9
gi|549325|sp|P36418|VILI_DICDI PROTOVILLIN (100 KD ACTIN-BINDIN... 29 6.9
gi|3142288 (U48251) protein kinase C-binding protein RACK7 [Hom... 29 6.9
gi|2492931|sp|Q59284|DAPE_CORGL SUCCINYL-DIAMINOPIMELATE DESUCC... 28 9.1
gi|1094686|prf||2106301A succinyl diaminopimelate desuccinylase... 28 9.1
>gi|476532|pir||QRXLL2 LDL receptor 2 precursor - African clawed
frog
Length = 909
Score = 30.5 bits (67), Expect = 1.8
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 122 TQATAPSFTT-APCVVTAAWPITCTTASPLLQQRTT 18
TQ +P+ TT AP T + P+T TT++P+ TT
Sbjct: 715 TQEASPTTTTSAPVTTTTSAPVTTTTSAPVTTTSTT 750
>gi|114244|sp|P15803|AS30_HUMAN ADRENAL SPECIFIC 30 KD PROTEIN
(CLONE PG2) >gi|87777|pir||S08139 hypothetical protein
pG2 - human >gi|28892|emb|CAA35582| (X17544)
unidentified reading frame (AA 1-286) [Homo sapiens]
Length = 286
Score = 30.1 bits (66), Expect = 2.4
Identities = 15/46 (32%), Positives = 18/46 (38%)
Frame = -1
Query: 144 QADTPPSHPGNGALIHHRTLCRYSGLADHLHYRITLATATYNAAPA 7
Q + P H G G L+HH G A H YR+ PA
Sbjct: 146 QQENPSPHRGPGHLLHHPGRAHQPGGAGHCGYRLPQQVRDLGVQPA 191
>gi|3877738|emb|CAA98949.1| (Z74473) predicted using Genefinder
[Caenorhabditis elegans]
Length = 770
Score = 30.1 bits (66), Expect = 2.4
Identities = 16/52 (30%), Positives = 21/52 (39%)
Frame = -2
Query: 173 TELPAMEMELKQTPRRPTQATAPSFTTAPCVVTAAWPITCTTASPLLQQRTT 18
TE+ E+ T T T P+ T+ T P T TT +P TT
Sbjct: 568 TEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTT 619
>gi|2135396|pir||S71548 homeotic protein pG2 - human
Length = 287
Score = 30.1 bits (66), Expect = 2.4
Identities = 15/46 (32%), Positives = 18/46 (38%)
Frame = -1
Query: 144 QADTPPSHPGNGALIHHRTLCRYSGLADHLHYRITLATATYNAAPA 7
Q + P H G G L+HH G A H YR+ PA
Sbjct: 147 QQENPSPHRGPGHLLHHPGRAHQPGGAGHCGYRLPQQVRDLGVQPA 192
>gi|547838|sp|Q99087|LDL1_XENLA LOW-DENSITY LIPOPROTEIN RECEPTOR 1
PRECURSOR (LDL RECEPTOR 1) >gi|214574 (M62976) low
density lipoprotein receptor-1 [Xenopus laevis]
Length = 909
Score = 29.0 bits (63), Expect = 5.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 119 QATAPSFTTAPCVVTAAWPITCTTASPLLQQRTT 18
+A+ + T+AP T + P+T TT++P+ TT
Sbjct: 717 EASPTTTTSAPVTTTTSAPVTTTTSAPVTTTSTT 750
>gi|476531|pir||QRXLL1 LDL receptor 1 precursor - African clawed
frog
Length = 909
Score = 29.0 bits (63), Expect = 5.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 119 QATAPSFTTAPCVVTAAWPITCTTASPLLQQRTT 18
+A+ + T+AP T + P+T TT++P+ TT
Sbjct: 717 EASPTTTTSAPVTTTTSAPVTTTTSAPVTTTSTT 750
>gi|3875594|emb|CAA94585.1| (Z70682) Similarity to Rabbit
UDP-glucuronosyltransferase (SW:UDBE_RABIT)
[Caenorhabditis elegans]
Length = 795
Score = 29.0 bits (63), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -2
Query: 122 TQATAPSFTTAPCVVTAAWPITCTTASPL 36
T T TT+P TA+ PITCT+ P+
Sbjct: 651 TIQTTKKITTSPTSTTASIPITCTSNCPV 679
>gi|2276127|dbj|BAA21556| (D88585) hepatitis A virus receptor
[Chlorocebus aethiops]
Length = 460
Score = 28.6 bits (62), Expect = 6.9
Identities = 16/45 (35%), Positives = 18/45 (39%)
Frame = -2
Query: 146 LKQTPRRPTQATAPSFTTAPCVVTAAWPITCTTASPLLQQRTTLP 12
L T P T P+ TT P T + TT L TTLP
Sbjct: 169 LPTTTTLPMTTTLPTTTTVPTTTTLPTTLPTTTLPTTLPTTTTLP 213
>gi|2338422 (AF012536) decoy receptor 1 [Homo sapiens] >gi|2338431
(AF012629) antagonist decoy receptor for TRAIL/Apo-2L
[Homo sapiens] >gi|2645842 (AF033854) lymphocyte
inhibitor of TRAIL [Homo sapiens]
Length = 259
Score = 28.6 bits (62), Expect = 6.9
Identities = 13/42 (30%), Positives = 21/42 (49%)
Frame = -2
Query: 176 GTELPAMEMELKQTPRRPTQATAPSFTTAPCVVTAAWPITCT 51
GT PA E + +P P A + TT+P ++ ++CT
Sbjct: 203 GTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPASSHYLSCT 244
>gi|2529565|gb|AAB81181| (AF016267) TRAIL receptor 3 [Homo sapiens]
Length = 259
Score = 28.6 bits (62), Expect = 6.9
Identities = 13/42 (30%), Positives = 21/42 (49%)
Frame = -2
Query: 176 GTELPAMEMELKQTPRRPTQATAPSFTTAPCVVTAAWPITCT 51
GT PA E + +P P A + TT+P ++ ++CT
Sbjct: 203 GTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPASSHYLSCT 244
>gi|6329749|dbj|BAA86439.1| (AB032951) KIAA1125 protein [Homo
sapiens]
Length = 1205
Score = 28.6 bits (62), Expect = 6.9
Identities = 16/56 (28%), Positives = 26/56 (45%)
Frame = -2
Query: 176 GTELPAMEMELKQTPRRPTQATAPSFTTAPCVVTAAWPITCTTASPLLQQRTTLPQ 9
G+ P L ++ + + A A + T+ VT P T SP+ +QR LP+
Sbjct: 772 GSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAPAPAATGSPVKKQRPLLPK 827
>gi|2443820|gb|AAB71413| (AF020502) cytotoxic TRAIL receptor-3 [Homo
sapiens] >gi|2957264 (AF014794) TNF related TRAIL
receptor [Homo sapiens]
Length = 299
Score = 28.6 bits (62), Expect = 6.9
Identities = 13/42 (30%), Positives = 21/42 (49%)
Frame = -2
Query: 176 GTELPAMEMELKQTPRRPTQATAPSFTTAPCVVTAAWPITCT 51
GT PA E + +P P A + TT+P ++ ++CT
Sbjct: 243 GTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPASSHYLSCT 284
>gi|3986192|dbj|BAA34953| (AB015466) growth-blocking peptide
[Spodoptera litura]
Length = 144
Score = 28.6 bits (62), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -2
Query: 131 RRPTQATAPSFTTAPCVVTAAWPITCTT 48
RRP + T PS TT+ T P+ TT
Sbjct: 85 RRPVEVTTPSTTTSTTTTTTVKPVETTT 112
>gi|549325|sp|P36418|VILI_DICDI PROTOVILLIN (100 KD ACTIN-BINDING
PROTEIN) >gi|479660|pir||S35061 protovillin - slime mold
(Dictyostelium discoideum) >gi|433877|emb|CAA52410|
(X74387) protovillin [Dictyostelium discoideum]
>gi|449435|prf||1919264A F actin-capping protein
(protovillin) [Dictyostelium discoideum]
Length = 959
Score = 28.6 bits (62), Expect = 6.9
Identities = 17/42 (40%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Frame = -2
Query: 128 RPTQATAPSFTTAPCVVTAAWPITCTTASPL--LQQRTTLPQRI 3
+PT T PS + P T TT PL L+Q+T LP I
Sbjct: 873 KPTTVTTPSKVATTTNTSTPSPTTITTFYPLSVLKQKTNLPNDI 916
>gi|3142288 (U48251) protein kinase C-binding protein RACK7 [Homo
sapiens]
Length = 553
Score = 28.6 bits (62), Expect = 6.9
Identities = 16/56 (28%), Positives = 26/56 (45%)
Frame = -2
Query: 176 GTELPAMEMELKQTPRRPTQATAPSFTTAPCVVTAAWPITCTTASPLLQQRTTLPQ 9
G+ P L ++ + + A A + T+ VT P T SP+ +QR LP+
Sbjct: 166 GSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAPAPAATGSPVKKQRPLLPK 221
>gi|2492931|sp|Q59284|DAPE_CORGL SUCCINYL-DIAMINOPIMELATE
DESUCCINYLASE (SDAP) >gi|2127426|pir||S60063
succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) -
Corynebacterium glutamicum >gi|939862|emb|CAA57141|
(X81379) succinyl-diaminopimelate desuccinylase
[Corynebacterium glutamicum]
Length = 369
Score = 28.2 bits (61), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (55%)
Frame = -1
Query: 141 ADTPPSHPGNGALIHHRTLCRYSGLADHLHYRITLATAT 25
AD PS +G + T+ SGLA +LH TLAT+T
Sbjct: 84 ADNLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATST 122
>gi|1094686|prf||2106301A succinyl diaminopimelate desuccinylase
[Corynebacterium glutamicum]
Length = 369
Score = 28.2 bits (61), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (55%)
Frame = -1
Query: 141 ADTPPSHPGNGALIHHRTLCRYSGLADHLHYRITLATAT 25
AD PS +G + T+ SGLA +LH TLAT+T
Sbjct: 84 ADNLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATST 122
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46772211
Number of Sequences: 443958
Number of extensions: 741338
Number of successful extensions: 2726
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2705
Number of HSP's gapped (non-prelim): 22
length of query: 65
length of database: 136,619,797
effective HSP length: 43
effective length of query: 21
effective length of database: 117,529,603
effective search space: 2468121663
effective search space used: 2468121663
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 61 (28.2 bits)