BLASTX 2.0.10 [Aug-26-1999]
Query= XF-07C01E-GL04
(408 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|3810893|dbj|BAA34065| (AB016766) preprotein translocase SecE... 57 6e-08
gi|6358644|gb|AAF07277.1|AF170176_3 (AF170176) 96% identity ove... 55 3e-07
gi|134400|sp|P16920|SECE_ECOLI PREPROTEIN TRANSLOCASE SECE SUBU... 55 3e-07
gi|1173415|sp|P43805|SECE_HAEIN PREPROTEIN TRANSLOCASE SECE SUB... 47 8e-05
gi|1711365|sp|P36691|SECE_STRVG PREPROTEIN TRANSLOCASE SECE SUB... 40 0.011
gi|849061|dbj|BAA09300| (D50624) SecE like protein [Streptomyce... 40 0.011
gi|3024607|sp|P96929|SECE_MYCTU PROBABLE PREPROTEIN TRANSLOCASE... 37 0.070
gi|1711364|sp|P36690|SECE_STRGR PREPROTEIN TRANSLOCASE SECE SUB... 36 0.16
gi|585980|sp|P38382|SECE_SYNY3 PREPROTEIN TRANSLOCASE SECE SUBU... 36 0.16
gi|541484|pir||S41060 secE protein - Streptomyces griseus >gi|4... 36 0.16
gi|1711363|sp|P52853|SECE_STRGB PREPROTEIN TRANSLOCASE SECE SUB... 36 0.16
gi|6094266|sp|O83263|SECE_TREPA PREPROTEIN TRANSLOCASE SECE SUB... 36 0.20
gi|6459840|gb|AAF11598.1|AE002041_2 (AE002041) preprotein trans... 35 0.27
gi|585981|sp|P38383|SECE_THETH PREPROTEIN TRANSLOCASE SECE SUBUNIT 35 0.35
gi|548912|sp|P36253|SECE_STACA PREPROTEIN TRANSLOCASE SECE SUBU... 34 0.60
gi|548915|sp|P35874|SECE_THEMA PREPROTEIN TRANSLOCASE SECE SUBU... 33 1.4
gi|1711362|sp|P50055|SECE_STRCO PREPROTEIN TRANSLOCASE SECE SUB... 32 1.8
gi|3982607|gb|AAC83557.1| (AF098664) olfactory receptor-like pr... 31 4.0
gi|2429437 (AF025458) No definition line found [Caenorhabditis ... 31 5.2
gi|2120060|pir||S69967 TyB protein - yeast (Saccharomyces cerev... 31 5.2
gi|1084634|pir||S56252 TyA protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120130|pir||S67320 TyA protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120112|pir||S70232 TyA protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120111|pir||S70231 TyA protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120113|pir||S69965 TyA protein - yeast (Saccharomyces cerev... 31 5.2
gi|6319368|ref|NP_009451.1|YBL101W-A| TyA gag protein.; Ybl101w... 31 5.2
gi|2120115|pir||S69968 TyA protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120129|pir||S70229 TyA protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120074|pir||S70230 TyB protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120071|pir||S69953 TyB protein - yeast (Saccharomyces cerev... 31 5.2
gi|2120075|pir||S69966 TyB protein - yeast (Saccharomyces cerev... 31 5.2
gi|6319369|ref|NP_009450.1|YBL101W-B| TyB Gag-Pol protein.; Ybl... 31 5.2
gi|6321110|ref|NP_011188.1|YFL002W-A| TyB Gag-Pol protein.; Yfl... 31 5.2
gi|2120073|pir||S70233 TyB protein - yeast (Saccharomyces cerev... 31 5.2
gi|141028|sp|P04540|NU5M_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE C... 30 9.0
gi|2315214|emb|CAA74748| (Y14390) Kv2 voltage-gated potassium c... 30 9.0
>gi|3810893|dbj|BAA34065| (AB016766) preprotein translocase SecE
subunit [Vibrio alginolyticus]
Length = 126
Score = 57.4 bits (136), Expect = 6e-08
Identities = 26/58 (44%), Positives = 40/58 (68%)
Frame = +1
Query: 211 TTAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 384
TT KG+ F ESR E+RKVVWPTRQE ++ T +V+ + +++L+L G D ++ +L
Sbjct: 62 TTTKGKAAISFAKESRMEVRKVVWPTRQETMQTTLIVLAVSIVMALVLWGIDGIMVRL 119
>gi|6358644|gb|AAF07277.1|AF170176_3 (AF170176) 96% identity over
127 amino acids with E. coli protein-export protein
(SECE) (SW:P16920); contains similarity to Pfam domain
PF00584 (SecE), Score=96.3, E=6,2e-25, N=1 [Salmonella
typhimurium LT2]
Length = 127
Score = 55.0 bits (130), Expect = 3e-07
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = +1
Query: 214 TAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 393
T KG+ F E+R E+RKV+WPTRQE + T +V + ++SL+L G D ++ +L +
Sbjct: 62 TTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSF 121
>gi|134400|sp|P16920|SECE_ECOLI PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|73082|pir||VXECSE protein-export protein secE -
Escherichia coli >gi|147800 (M30610) secE protein
[Escherichia coli] >gi|396320 (U00006) secE [Escherichia
coli] >gi|1790413 (AE000472) preprotein translocase
[Escherichia coli]
Length = 127
Score = 55.0 bits (130), Expect = 3e-07
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = +1
Query: 214 TAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 393
T KG+ F E+R E+RKV+WPTRQE + T +V + ++SL+L G D ++ +L +
Sbjct: 62 TTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSF 121
>gi|1173415|sp|P43805|SECE_HAEIN PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1075165|pir||F64088 preprotein translocase (secE)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573718 (U32754) preprotein translocase SecE subunit
(secE) [Haemophilus influenzae Rd]
Length = 106
Score = 46.9 bits (109), Expect = 8e-05
Identities = 25/54 (46%), Positives = 32/54 (58%)
Frame = +1
Query: 214 TAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVI 375
T +G + R F +SR E RKVVWPTR EA + T +VI + I SL D +I
Sbjct: 41 TNQGTKARAFFNDSRTEARKVVWPTRAEARQTTLIVIGVTMIASLFFWAVDSII 94
>gi|1711365|sp|P36691|SECE_STRVG PREPROTEIN TRANSLOCASE SECE SUBUNIT
Length = 93
Score = 39.9 bits (91), Expect = 0.011
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQK 381
ELRKVVWPTR + T VVIV + I+ L+ DF +K
Sbjct: 47 ELRKVVWPTRNQLTTYTTVVIVFVVIMIGLVTVIDFGFEK 86
>gi|849061|dbj|BAA09300| (D50624) SecE like protein [Streptomyces
virginiae]
Length = 121
Score = 39.9 bits (91), Expect = 0.011
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQK 381
ELRKVVWPTR + T VVIV + I+ L+ DF +K
Sbjct: 75 ELRKVVWPTRNQLTTYTTVVIVFVVIMIGLVTVIDFGFEK 114
>gi|3024607|sp|P96929|SECE_MYCTU PROBABLE PREPROTEIN TRANSLOCASE
SECE SUBUNIT >gi|1877376|emb|CAB07097| (Z92772) secE
[Mycobacterium tuberculosis]
Length = 161
Score = 37.1 bits (84), Expect = 0.070
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 384
E+RKV+WP R++ + T VV+ + + L+ G D + KL
Sbjct: 115 EMRKVIWPNRKQMLTYTSVVLAFLAFMVALVAGADLGLTKL 155
>gi|1711364|sp|P36690|SECE_STRGR PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|603588|emb|CAA51295| (X72787) secretory protein SecE
[Streptomyces griseus]
Length = 95
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 393
ELRKVVWPTR + T VVIV + ++ L+ D ++ ++
Sbjct: 49 ELRKVVWPTRSQLTTYTSVVIVFVVVMIGLVTVLDIGFARVVKY 92
>gi|585980|sp|P38382|SECE_SYNY3 PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1652500|dbj|BAA17421| (D90906) secretory protein
SecE [Synechocystis sp.]
Length = 81
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +1
Query: 241 FLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQ 390
F+ ++ EL KVVWP+RQ+ I + VI+M+ ++S ++ D + +T+
Sbjct: 26 FIAATKDELAKVVWPSRQQLISESVAVILMVILVSTVIYFVDQIFGWITK 75
>gi|541484|pir||S41060 secE protein - Streptomyces griseus
>gi|483835|dbj|BAA04280| (D17464) SecE [Streptomyces
griseus]
Length = 86
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 393
ELRKVVWPTR + T VVIV + ++ L+ D ++ ++
Sbjct: 40 ELRKVVWPTRSQLTTYTSVVIVFVVVMIGLVTVLDMGFARVVKY 83
>gi|1711363|sp|P52853|SECE_STRGB PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1213237|emb|CAA65164.1| (X95916) membrane
translocase [Streptomyces galbus]
Length = 94
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/36 (47%), Positives = 22/36 (60%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDF 369
ELRKVVWPTR + T VVI + I+ L+ D+
Sbjct: 48 ELRKVVWPTRNQLTSYTTVVIFFVAIMIRLVTVIDY 83
>gi|6094266|sp|O83263|SECE_TREPA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|3322505 (AE001205) preprotein translocase subunit
(secE) [Treponema pallidum]
Length = 59
Score = 35.6 bits (80), Expect = 0.20
Identities = 19/56 (33%), Positives = 28/56 (49%)
Frame = +1
Query: 229 EFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQWF 396
+F F E E R+VVWP R + VV+V +++L LG D + L +F
Sbjct: 3 KFAKFRRECVAEFRRVVWPARTQVHTAVKVVLVSTVVMALFLGLIDALFVALLSFF 58
>gi|6459840|gb|AAF11598.1|AE002041_2 (AE002041) preprotein
translocase, SecE subunit [Deinococcus radiodurans]
Length = 61
Score = 35.2 bits (79), Expect = 0.27
Identities = 13/41 (31%), Positives = 26/41 (62%)
Frame = +1
Query: 250 ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFV 372
++R EL +V WP+RQ+ + T V++ + L+L++ D +
Sbjct: 9 DAREELSRVTWPSRQDVLEGTQAVLIFVVALTLIVWALDLL 49
>gi|585981|sp|P38383|SECE_THETH PREPROTEIN TRANSLOCASE SECE SUBUNIT
Length = 60
Score = 34.8 bits (78), Expect = 0.35
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 250 ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 384
E+R EL +V WPTR++ + T +++ + LG +D V + L
Sbjct: 11 EARAELARVTWPTREQVVEGTQAILLFTLAFMVYLGLYDTVFRFL 55
>gi|548912|sp|P36253|SECE_STACA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|487094|pir||S38869 protein-export protein secE -
Staphylococcus carnosus >gi|426472|emb|CAA53737|
(X76134) secE [Staphylococcus carnosus]
Length = 65
Score = 34.0 bits (76), Expect = 0.60
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQ 390
E+ K WPT++E ++ T +VIV + + D I KL +
Sbjct: 20 EMEKTSWPTKEEILKYTTIVIVTVVFFLIFFYALDLGIGKLIE 62
>gi|548915|sp|P35874|SECE_THEMA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|407023|emb|CAA77865| (Z11839) SecE [Thermotoga
maritima] >gi|4980958|gb|AAD35535.1|AE001723_5
(AE001723) preprotein translocase SecE subunit
[Thermotoga maritima]
Length = 65
Score = 32.8 bits (73), Expect = 1.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 229 EFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFV 372
+ R F E E +K+ WP+R+E + VV+V++ + S+ DF+
Sbjct: 3 KLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFI 50
>gi|1711362|sp|P50055|SECE_STRCO PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1084257|pir||S54716 secE protein - Streptomyces
coelicolor >gi|971287|dbj|BAA06984| (D32254) secE
[Streptomyces coelicolor] >gi|3493238 (AF071013) protein
translocase [Streptomyces lividans]
Length = 94
Score = 32.5 bits (72), Expect = 1.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 262 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDF 369
++RKVVWP+R + T VVI+ + I+ L+ D+
Sbjct: 48 DVRKVVWPSRNQLTTYTTVVIIFVVIMIGLVTLIDY 83
>gi|3982607|gb|AAC83557.1| (AF098664) olfactory receptor-like
protein [Homo sapiens]
Length = 312
Score = 31.3 bits (69), Expect = 4.0
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 98 YGFCLVELWIFLCWVLGLHSCVVWLLCSFSSLLYRCL*LQQRAVNFVDSCLSPVLSCVRW 277
YG C+ +L++FL W LG C++ ++ +F + C L+ A+ C +L+ + W
Sbjct: 94 YGGCITQLYVFL-W-LGATECILLVVMAFDRYVAVCRPLRYTAIMNPQLCW--LLAVIAW 149
Query: 278 SG 283
G
Sbjct: 150 LG 151
>gi|2429437 (AF025458) No definition line found [Caenorhabditis
elegans]
Length = 612
Score = 30.9 bits (68), Expect = 5.2
Identities = 19/49 (38%), Positives = 26/49 (52%), Gaps = 4/49 (8%)
Frame = +2
Query: 104 FCLVEL---WIFLCWVLGLHSCVVWL-LCSFSSLLYRCL*LQQRAVNFVDSCL 250
FCL +L W W VVWL L + S++YRCL ++ F D C+
Sbjct: 15 FCLYKLLFRWKGSIWKSVWAELVVWLCLYAVLSVIYRCLLTMKQRATFEDLCI 67
>gi|2120060|pir||S69967 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.L
Length = 1598
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|1084634|pir||S56252 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2 >gi|2120124|pir||S69843
TyA protein - yeast (Saccharomyces cerevisiae)
retrotransposon Ty2.GR >gi|836752|dbj|BAA09236.1|
(D50617) transposon TY1-17 49.8KD hypothetical protein
[Saccharomyces cerevisiae] >gi|870826|dbj|BAA08074|
(D44604) TRANSPOSON TY1-17 49.8KD HYPOTHETICAL PROTEIN
[Saccharomyces cerevisiae] >gi|1323275|emb|CAA97176|
(Z72946) TY2A [Saccharomyces cerevisiae]
>gi|1323280|emb|CAA97185| (Z72947) TY2A [Saccharomyces
cerevisiae]
Length = 438
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120130|pir||S67320 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.D
>gi|1136218|emb|CAA92720| (Z68329) unknown
[Saccharomyces cerevisiae] >gi|1431569|emb|CAA98913|
(Z74387) TY2A [Saccharomyces cerevisiae]
Length = 438
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTSRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120112|pir||S70232 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.O
>gi|1420746|emb|CAA99669| (Z75251) TY2A [Saccharomyces
cerevisiae] >gi|1420749|emb|CAA99672| (Z75252) TY2A
[Saccharomyces cerevisiae]
Length = 438
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120111|pir||S70231 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.O
>gi|1420461|emb|CAA99403| (Z75100) TY2A [Saccharomyces
cerevisiae] >gi|1431577|emb|CAA99405| (Z75101) TY2A
[Saccharomyces cerevisiae]
Length = 438
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120113|pir||S69965 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.L
Length = 438
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|6319368|ref|NP_009451.1|YBL101W-A| TyA gag protein.; Ybl101w-ap
>gi|626963|pir||S45397 TyA protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty2
>gi|496670|emb|CAA55997| (X79489) Ty A [Saccharomyces
cerevisiae] >gi|536164|emb|CAA84921| (Z35861) TY2A
[Saccharomyces cerevisiae] >gi|536170|emb|CAA84925.1|
(Z35862) TY2A [Saccharomyces cerevisiae]
Length = 438
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120115|pir||S69968 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.L
Length = 438
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120129|pir||S70229 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.G
>gi|1323028|emb|CAA97031| (Z72823) frame-shift in TYA -
probably not functional [Saccharomyces cerevisiae]
>gi|1323034|emb|CAA97033| (Z72824) frame-shift in TYA
probably - not functional [Saccharomyces cerevisiae]
Length = 349
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 269 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 323
Query: 174 NNQTT 160
N++T
Sbjct: 324 INEST 328
>gi|2120074|pir||S70230 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.O
>gi|1420460|emb|CAA99402| (Z75100) TY2B [Saccharomyces
cerevisiae] >gi|1431576|emb|CAA99404| (Z75101) TY2B
[Saccharomyces cerevisiae]
Length = 1770
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120071|pir||S69953 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.DR
>gi|1431570|emb|CAA98914| (Z74387) TY2B [Saccharomyces
cerevisiae]
Length = 1770
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTSRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120075|pir||S69966 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.L
Length = 1770
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|6319369|ref|NP_009450.1|YBL101W-B| TyB Gag-Pol protein.;
Ybl101w-bp >gi|626966|pir||S45842 TyB protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty2
>gi|536165|emb|CAA84922| (Z35861) TY2B [Saccharomyces
cerevisiae] >gi|4539234|emb|CAA84927.2| (Z35862) TY2B
[Saccharomyces cerevisiae]
Length = 1770
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|6321110|ref|NP_011188.1|YFL002W-A| TyB Gag-Pol protein.;
Yfl002w-ap >gi|1362486|pir||S58651 hypothetical protein
YFL002w-a - yeast (Saccharomyces cerevisiae)
>gi|2120061|pir||S69844 TyB protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty2.GR
>gi|1323276|emb|CAA97177| (Z72946) TY2B [Saccharomyces
cerevisiae] >gi|1323281|emb|CAA97186| (Z72947) TY2B
[Saccharomyces cerevisiae]
Length = 1770
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|2120073|pir||S70233 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2.O
>gi|1420747|emb|CAA99667| (Z75251) TY2B [Saccharomyces
cerevisiae] >gi|1420750|emb|CAA99670| (Z75252) TY2B
[Saccharomyces cerevisiae]
Length = 1770
Score = 30.9 bits (68), Expect = 5.2
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -1
Query: 354 QQQTEYSNHDNYNPSDTNSLLTCRPDHLTQLKTGLKQESTKFTALCCSHKHRYSSDENEH 175
+Q +EY N +P+ TN+ +T R H T K + K + S K +S N+H
Sbjct: 358 KQHSEYKNVSRTSPNTTNTKVTTRNYHRT---NSSKPRAAKAHNIATSSK--FSRVNNDH 412
Query: 174 NNQTT 160
N++T
Sbjct: 413 INEST 417
>gi|141028|sp|P04540|NU5M_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
5 >gi|76351|pir||QQUTC5 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - Trypanosoma brucei mitochondrion
(SGC6) >gi|343540 (M14820) NADH dehydrogenase subunit 5
[Trypanosoma brucei] >gi|6015581|emb|CAB57807.1|
(X01094) unidentified reading frame 10 [Trypanosoma
brucei]
Length = 590
Score = 30.1 bits (66), Expect = 9.0
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Frame = +2
Query: 35 FLVEIFSNTSLLACCWC*GCLYGFCLVELWIFLCWV-----LGLHSCVVWLL 175
F V I ++ CCW C+ F L+ +W F+ + L C++W+L
Sbjct: 537 FFVIIILVVFMIFCCWYFVCMIIFMLLFVWNFVIYFRYNLKYCLFFCILWIL 588
>gi|2315214|emb|CAA74748| (Y14390) Kv2 voltage-gated potassium
channel [Loligo pealei]
Length = 908
Score = 30.1 bits (66), Expect = 9.0
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 4/72 (5%)
Frame = -1
Query: 372 HEIKATQQQTEYSNHDNYN-PSDTNSLLTCRPDHLTQLKTGLKQESTKFT---ALCCSHK 205
H + TQ E S + + PSD + L C ++KT +QEST T A C +H
Sbjct: 727 HRMTTTQASNEPSLQNQFEFPSDAMTDLDCDNKGCIEMKTLPRQESTASTDTYASCFTHP 786
Query: 204 HRYSSDENEHNNQTTQ 157
S N+ + Q
Sbjct: 787 QSSPSITGRPNDASNQ 802
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100549353
Number of Sequences: 443958
Number of extensions: 2034364
Number of successful extensions: 5524
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5499
Number of HSP's gapped (non-prelim): 44
length of query: 136
length of database: 136,619,797
effective HSP length: 52
effective length of query: 83
effective length of database: 113,533,981
effective search space: 9423320423
effective search space used: 9423320423
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)