BLASTX 2.0.10 [Aug-26-1999]
Query= XF-07B09-GL29
(1251 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|115939|sp|P06961|CCA_ECOLI TRNA NUCLEOTIDYLTRANSFERASE (TRNA... 416 e-115
gi|1168822|sp|P45269|CCA_HAEIN TRNA NUCLEOTIDYLTRANSFERASE (TRN... 404 e-112
gi|1168821|sp|P45749|CCA_AERHY TRNA NUCLEOTIDYLTRANSFERASE (TRN... 250 2e-65
gi|4808392|emb|CAB42723.1| (AL049826) putative RNA nucleotidylt... 122 6e-27
gi|6458932|gb|AAF10763.1|AE001968_2 (AE001968) tRNA nucleotidyl... 116 5e-25
gi|4204222|dbj|BAA74513| (AB022867) polyA polymerase [Prevotell... 111 2e-23
gi|3329159|gb|AAC68299.1| (AE001341) Poly A Polymerase [Chlamyd... 104 2e-21
gi|886309 (L39923) polyA polymerase [Mycobacterium leprae] 103 3e-21
gi|1944582|emb|CAB08094| (Z94121) pcnA [Mycobacterium tuberculo... 102 8e-21
gi|4377160|gb|AAD18983| (AE001665) Poly A Polymerase [Chlamydia... 99 7e-20
gi|2983086 (AE000689) poly A polymerase [Aquifex aeolicus] 98 1e-19
gi|3650360|emb|CAA77045| (Y18131) polynucleotide adenylyltransf... 95 1e-18
gi|3913200|sp|Q47907|CCA_FRANO TRNA NUCLEOTIDYLTRANSFERASE (TRN... 94 2e-18
gi|2507091|sp|P13685|PCNB_ECOLI POLY(A) POLYMERASE (PAP) (PLASM... 90 4e-17
gi|1786336 (AE000123) poly(A) polymerase I [Escherichia coli] 90 4e-17
gi|628784|pir||S45212 plasmid copy number control protein - Esc... 90 4e-17
gi|482420|pir||A45922 nucleic acid-binding protein pcnB - Esche... 89 6e-17
gi|1172043|sp|P44439|PCNB_HAEIN PROBABLE POLY(A) POLYMERASE (PA... 88 1e-16
gi|1001282|dbj|BAA10528| (D64003) polyA polymerase [Synechocyst... 87 2e-16
gi|3328838|gb|AAC68007.1| (AE001314) PolyA Polymerase [Chlamydi... 87 3e-16
gi|6458711|gb|AAF10560.1|AE001950_12 (AE001950) tRNA nucleotidy... 86 5e-16
gi|4377290|gb|AAD19102| (AE001676) Poly A Polymerase [Chlamydia... 83 4e-15
gi|3322888 (AE001234) polynucleotide adenylyltransferase (pcnB)... 78 1e-13
gi|1709578|sp|P42977|PAPS_BACSU POLY(A) POLYMERASE (PAP) >gi|11... 78 2e-13
gi|3322543 (AE001208) polynucleotide adenylyltransferase (pcnA)... 77 2e-13
gi|2313761|gb|AAD07702.1| (AE000578) poly(A) polymerase (papS) ... 77 3e-13
gi|755607 (L38424) polyA polymerase [Bacillus subtilis] 76 4e-13
gi|2984364 (AE000776) poly A polymerase [Aquifex aeolicus] 76 6e-13
gi|559391|emb|CAA57198| (X81440) ORFIII [Acidaminococcus fermen... 76 7e-13
gi|1653244|dbj|BAA18159| (D90912) polyA polymerase [Synechocyst... 75 1e-12
gi|4981239|gb|AAD35797.1|AE001742_12 (AE001742) tRNA nucleotidy... 73 4e-12
gi|4155144 (AE001491) POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helic... 73 5e-12
gi|2688624 (AE001170) polynucleotide adenylyltransferase (papS)... 73 6e-12
gi|4929563|gb|AAD34042.1|AF151805_1 (AF151805) CGI-47 protein [... 62 1e-08
gi|4539282|emb|CAB39906.1| (AL049498) putative trna nucleotidyl... 57 3e-07
gi|6321016|ref|NP_011095.1|CCA1| tRNA nucleotidyltransferase (t... 55 9e-07
gi|3860586|emb|CAA14487| (AJ235270) POLY(A) POLYMERASE (pcnB) [... 53 5e-06
gi|3877673|emb|CAB02125.1| (Z79757) Similar to B.subtilis Poly(... 52 1e-05
gi|3287692 (AC003979) Similar to tRNA adenylyltransferase gb|U1... 51 2e-05
gi|2129851|pir||S65148 tRNA adenylyltransferase (EC 2.7.7.25) -... 49 9e-05
gi|6318263|emb|CAB60249.1| (AL132839) putative tRNA nucleotidyl... 46 6e-04
gi|281493|pir||S27736 hypothetical protein B - Thermus aquaticu... 45 0.001
gi|6460913|gb|AAF12617.1|AE001826_86 (AE001826) hypothetical pr... 44 0.002
gi|4914379|gb|AAD32915.1|AC007584_13 (AC007584) putative poly(A... 43 0.004
gi|535707 (L27092) B-cell receptor [Pneumocystis carinii] 34 3.4
gi|546434|bbs|145773 (S69351) BRN-3b=class V POU transcription ... 32 7.6
gi|2495301|sp|Q63934|BR3B_MOUSE BRAIN-SPECIFIC HOMEOBOX/POU DOM... 32 7.6
>gi|115939|sp|P06961|CCA_ECOLI TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|67073|pir||RNECTA tRNA
adenylyltransferase (EC 2.7.7.25) - Escherichia coli
>gi|145468 (M12788) tRNA nucleotidyltransferase
[Escherichia coli] >gi|882578 (U28379) CG Site No. 933
[Escherichia coli] >gi|1789436 (AE000387) tRNA
nucleotidyl transferase [Escherichia coli]
Length = 412
Score = 416 bits (1059), Expect = e-115
Identities = 213/404 (52%), Positives = 265/404 (64%)
Frame = +1
Query: 1 MKSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFAL 180
MK YLVGGAVRDALLG P D DWVVVG+ P M G++ VGRDFPVFLHP+T EE+AL
Sbjct: 1 MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYAL 60
Query: 181 ARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQR 360
ARTERK+G GY GF A P VTLE DL+RRD TINA+A D N +IDPY G+ DL+ R
Sbjct: 61 ARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD-NGEIIDPYNGLGDLQNR 119
Query: 361 ILRHISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELNSLIPERIWK 540
+LRH+SPAF EDPLRVLR ARF AR A LGF IA ETL +MREM +GEL L PER+WK
Sbjct: 120 LLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHLTPERVWK 179
Query: 541 ELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEIDTGLHQELVSDMA 720
E +L P F LR AL V+ PE++AL+GVP A +HPEIDTG+H + MA
Sbjct: 180 ETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGIHTLMTLSMA 239
Query: 721 AKLAPGDMLIGFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQQLSERLKVPRDYQQLA 900
A L+P + + FA LCHDLGK LTP WP H H G+ +QL +RL+VP + + LA
Sbjct: 240 AMLSP-QVDVRFATLCHDLGKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLA 298
Query: 901 LIACREHLNVHRLSKLHDHTVYELLQRCDAFRRPERIAQLAIVCEADYRGRYGHEDANYP 1080
+ H +H L+ T+ +L DA+R+P+R+ QLA+ EAD RGR G E A+YP
Sbjct: 299 RLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRGRTGFESADYP 358
Query: 1081 QGQHLCRLHAAALAVNARDLNRQDLHGTQIGEALAQARIRAISS 1212
QG+ L A +V + + G +I E L + RI A++S
Sbjct: 359 QGRWLREAWEVAQSVPTKAVVEAGFKGVEIREELTRRRIAAVAS 402
>gi|1168822|sp|P45269|CCA_HAEIN TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|1075396|pir||B64132 tRNA
nucleotidyltransferase (cca) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1574448 (U32834) tRNA
nucleotidyltransferase (cca) [Haemophilus influenzae Rd]
Length = 416
Score = 404 bits (1028), Expect = e-112
Identities = 211/405 (52%), Positives = 266/405 (65%), Gaps = 5/405 (1%)
Frame = +1
Query: 1 MKSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFAL 180
MK YLVGGAVRD LLG P D DW+VVGADPA + SLG++ VG+DFPVFL+PKT EE+AL
Sbjct: 1 MKVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKTKEEYAL 60
Query: 181 ARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQR 360
ARTERK+ GY GFI + PT+TLEQDL RRD TINA+A + + +IDPYGG DLE R
Sbjct: 61 ARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGE-IIDPYGGKQDLENR 119
Query: 361 ILRHISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELNSLIPERIWK 540
ILRHISPAF+EDPLRVLR ARF AR LGF IA ETL +M E+A SGEL L ERIW
Sbjct: 120 ILRHISPAFSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGELQHLTAERIWL 179
Query: 541 ELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEIDTGLHQELVSDMA 720
E ++L P + TL AL V+ E++ALYGVP +HPE+D+ +H LV A
Sbjct: 180 ETEKALNEKNPEIYFETLHKTGALSVLFSEIDALYGVPNPVKHHPEVDSFIHTMLVLKQA 239
Query: 721 AKLAPGDMLIG-----FAALCHDLGKALTPRATWPHHPMHEQRGMAPTQQLSERLKVPRD 885
L + ++ FAA+CHDLGKALTP+ PHH HEQ G+ PT+ L +RLKVP
Sbjct: 240 VNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSLCKRLKVPSY 299
Query: 886 YQQLALIACREHLNVHRLSKLHDHTVYELLQRCDAFRRPERIAQLAIVCEADYRGRYGHE 1065
+Q+LA + C H ++H+ +L TV L R D +R+P+R + VC AD RGR G E
Sbjct: 300 FQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQRFQEFLQVCLADTRGRTGFE 359
Query: 1066 DANYPQGQHLCRLHAAALAVNARDLNRQDLHGTQIGEALAQARIRAISST 1215
+YPQ ++ +L AA V+ + + I L + RI A+ T
Sbjct: 360 TKDYPQIDYINQLLHAANEVDVQQVIADGFEKQAIKNELTKRRILAVKQT 409
>gi|1168821|sp|P45749|CCA_AERHY TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME)
Length = 192
Score = 250 bits (632), Expect = 2e-65
Identities = 125/191 (65%), Positives = 144/191 (74%)
Frame = +1
Query: 1 MKSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFAL 180
M++YLVGGAVRD LLG P GD D +VVGA M +LGF VGRDFPVFLHPKT +E+AL
Sbjct: 1 MQTYLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLALGFTQVGRDFPVFLHPKTQQEYAL 60
Query: 181 ARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQR 360
ARTERK G GY GF+ +A P VTLEQDL RRD T+NAIA D+ L DPYGG+ DLE+R
Sbjct: 61 ARTERKQGRGYTGFVCHASPEVTLEQDLLRRDLTVNAIAEDE-EGRLHDPYGGIQDLERR 119
Query: 361 ILRHISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELNSLIPERIWK 540
+LRH+SPAFAEDPLR+LR ARF AR GF +APETL +MREM +GEL L PER+WK
Sbjct: 120 VLRHVSPAFAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTDAGELAHLTPERVWK 179
Query: 541 ELSRSLAYTQP 573
EL R L P
Sbjct: 180 ELERVLLGETP 190
>gi|4808392|emb|CAB42723.1| (AL049826) putative RNA
nucleotidyltransferase [Streptomyces coelicolor]
Length = 483
Score = 122 bits (303), Expect = 6e-27
Identities = 109/307 (35%), Positives = 152/307 (49%), Gaps = 23/307 (7%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWVVVG------------ADPAHMESLGFKAVGRDFPVF-LH 153
LVGG+VRDALLG+ D D+ AD + F VG + +
Sbjct: 46 LVGGSVRDALLGRLGNDLDFTTDARPQDVLKIMRPWADAVWEVGIAFGTVGGQKDGWQIE 105
Query: 154 PKTGEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPY 333
T A RT RK Y ++E+DL RRDFT+NA+A IDP+
Sbjct: 106 VTTYRSEAYDRTSRKPEVSYGD---------SIEEDLVRRDFTVNAMAVALPEKVFIDPH 156
Query: 334 GGVNDLEQRILR---HISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASG 504
GG++DL R+LR +F++DPLR++RAARF A+ L F +APE + M +MA G
Sbjct: 157 GGLDDLAARVLRTPGTPEDSFSDDPLRMMRAARFAAQ---LDFEVAPEVVKAMHDMA--G 211
Query: 505 ELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEID 684
++ + ER+ EL++ + P L L E VLPEL AL + ++H D
Sbjct: 212 RIDIVSAERVRDELNKLILSPHPRKGLSLLVETGLAERVLPELPALR--LERDEHHRHKD 269
Query: 685 TGLHQELVSD--MAAKLAPGDMLIGFAALCHDLGKALTPRATWP-----HHPMHEQRGMA 843
H +V + MA + D+ + AAL HD+GK T R HH HE G
Sbjct: 270 VYDHTLIVLEQAMALESEGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHH--HEVVGAK 327
Query: 844 PTQQLSERLKVPRDYQQLALIACREHLNVH 933
T++ LK D + HL H
Sbjct: 328 MTKKRMIALKYSNDLVRDVSRLVELHLRFH 357
>gi|6458932|gb|AAF10763.1|AE001968_2 (AE001968) tRNA
nucleotidyltransferase/poly A polymerase family protein
[Deinococcus radiodurans]
Length = 434
Score = 116 bits (287), Expect = 5e-25
Identities = 106/304 (34%), Positives = 153/304 (49%), Gaps = 11/304 (3%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWVVVGADPAH-MESLGFKAVGRDFPVFLHPKTGEEFALAR- 186
LVGGAVRD L G + D DW DPA +L G FP+ EE R
Sbjct: 17 LVGGAVRDWLRGVRSADYDWA--HPDPAAGARALAALVGGAAFPL------DEERGYWRV 68
Query: 187 TERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQRIL 366
T + H + N LE DL+RRDFT+NAIA + L+DP GG DL++R+L
Sbjct: 69 TAGEVQHDFVPLPPN------LEDDLRRRDFTVNAIAL-REGRRLVDPLGGQQDLKRRVL 121
Query: 367 RHIS-PAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAA---SGELNSLIPERI 534
R +S DPLR RAARF+ L+ F++ P+T +R++AA +G L ER+
Sbjct: 122 RMVSEDNLRADPLRAWRAARFVTTLS---FTLEPQTEQAVRQVAADLKAGRLPFPAWERV 178
Query: 535 WKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEI-DTGLHQELVS 711
EL L A + TL + L++ LPEL G+ Q +H ++ + G+ E +
Sbjct: 179 RDELHALLRSPDAARGILTLEALGLLDLTLPELREGQGLTQGGFHHLDVFEHGV--EALH 236
Query: 712 DMAAKLAPGDMLIGFAALCHDLGKALT----PRATWPHHPMHEQRGMAPTQQLSERLKVP 879
+ + D+L+ +A L HD+GK T P H++ G T Q+ RLK+P
Sbjct: 237 QLLTRRPDADLLLRWATLLHDVGKPRTFARDPDTGRRSFHGHDRVGAELTTQILTRLKLP 296
Query: 880 RDYQQLALIACREHL 924
+ A + H+
Sbjct: 297 GADVKRAAALVKAHM 311
>gi|4204222|dbj|BAA74513| (AB022867) polyA polymerase [Prevotella
ruminicola]
Length = 479
Score = 111 bits (274), Expect = 2e-23
Identities = 112/347 (32%), Positives = 172/347 (49%), Gaps = 25/347 (7%)
Frame = +1
Query: 1 MKSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGR--DFPVFLHPKTGE-- 168
++ Y+VGG VRD L +P+ D D VVVG+ E L + VG+ VF + T +
Sbjct: 30 LECYVVGGYVRDIFLERPSNDIDVVVVGSGIKVAEELK-RIVGKKAHLSVFKNFGTAQVK 88
Query: 169 ----------EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIA---HDQT 309
EF AR E + + + N TLE D RRDFTINA+A + +
Sbjct: 89 FWQKGTEYEVEFVGARKESYSHDSRKPIVENG----TLEDDQNRRDFTINAMAICLNKER 144
Query: 310 NDTLIDPYGGVNDLEQRIL-RHISP--AFAEDPLRVLRAARFMARLAPLGFSIAPETLTM 480
L+DP+ G+ DLE I+ + P F++DPLR++R RF + L F I ET
Sbjct: 145 FGELVDPFNGLADLEDGIIATPLEPGITFSDDPLRMMRCIRFATQ---LNFQIEEETFVA 201
Query: 481 MREMAASGELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQH 660
+ MA + + ERI EL++ + P+ L+ L ++LPEL+AL + +
Sbjct: 202 LERMA--DRIKIVSGERIKDELNKIILSKTPSRGFVDLQRCGLLNIILPELSAL-DIVEQ 258
Query: 661 ADYHPEIDTGLHQELVSDMAAKLAPGDMLIGFAALCHDLGKALTPR----ATWPHHPMHE 828
+ + H V D A + ++ + +AAL HD+GK + R W H H
Sbjct: 259 KNGRAHKNNFYHTLEVLDNVA-MHSDNLWLRWAALLHDVGKTKSKRWDAAIGWTFH-NHN 316
Query: 829 QRGMAPTQQLSERLKVPRDYQQLALIACREHLNVH-RLSKLHDHTVYELLQRCDAFRRPE 1005
G Q+ RL +P D + + ++ +++H R + D V + R E
Sbjct: 317 MIGAKMVPQIFRRLMLPLD---MKMKYVQKLVDMHMRPIVIADEIVTDSAVRRLMNDAGE 373
Query: 1006 RIAQLAIVCEAD 1041
I L +CEAD
Sbjct: 374 DIEDLMTLCEAD 385
>gi|3329159|gb|AAC68299.1| (AE001341) Poly A Polymerase [Chlamydia
trachomatis]
Length = 410
Score = 104 bits (257), Expect = 2e-21
Identities = 79/210 (37%), Positives = 114/210 (53%), Gaps = 9/210 (4%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL--GFKAVGRDFPVFLHPKTGEEFA 177
++Y VGG+VRD LLG+P + D + A P + ++ ++G F + + G+ F
Sbjct: 22 QAYFVGGSVRDMLLGRPIEEVD-IATNASPTIVTTIFPDTLSIGAAFGIIAVKENGQLFE 80
Query: 178 LARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQ 357
+A T R + G N +++ D RRDFTIN + +D + L D G DLE+
Sbjct: 81 VA-TFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFEEKLFDLVEGRADLER 139
Query: 358 RILR---HISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGEL----NS 516
+I+R H F ED LR+LRA RF A LGF++ P+T E A EL NS
Sbjct: 140 KIIRAIGHPKQRFLEDKLRILRAIRF---AATLGFALDPQT-----EQAIIKELPSLPNS 191
Query: 517 LIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPEL 633
+ PERIW+EL + L T P L L + L ++ PEL
Sbjct: 192 VSPERIWQELKKMLR-TAPYESLQLLTKLKVLPILFPEL 229
>gi|886309 (L39923) polyA polymerase [Mycobacterium leprae]
Length = 411
Score = 103 bits (254), Expect = 3e-21
Identities = 107/304 (35%), Positives = 155/304 (50%), Gaps = 30/304 (9%)
Frame = +1
Query: 10 YLVGGAVRDALLGQ-PAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFALA- 183
YLVGG+VRDALLG+ + D D+ A P ++ + + + +TG EF
Sbjct: 40 YLVGGSVRDALLGRLDSPDLDFAT-DAGPEQVQQIMRRWADNLW------ETGIEFGTIG 92
Query: 184 ------RTERKNGHGYRGFIVNADPTVT----LEQDLQRRDFTINAIAHDQTN---DTLI 324
R E R V+ +P V L+ DL RRDFT+NA+A +
Sbjct: 93 VGKGDYRLEITTFRADRYDQVSRNPEVRFSDRLDDDLVRRDFTVNAMAVRIASYGPGEFF 152
Query: 325 DPYGGVNDLEQRILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMA 495
DP GG+ L R+L S +F +DPLR++RAARF+++ LGF++AP+ + EMA
Sbjct: 153 DPLGGLAALRVRVLETPAAPSVSFGDDPLRIVRAARFVSQ---LGFTVAPQVHAAIEEMA 209
Query: 496 ASGELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNAL-YGVPQHADYH 672
+ +L + ER+ EL + L AA + L EVVLPE+ + + +H H
Sbjct: 210 S--QLARISAERVSTELDKLLLGNDAAAGIDLLVQTGMGEVVLPEIGDMRMAIDEH---H 264
Query: 673 PEIDTGLHQELVSDMAAKLAPG--DMLIGFAALCHDLGKALTPR-----ATWPHHPMHEQ 831
D H V A L D+++ +AAL HD+GK T R HH HE
Sbjct: 265 QHKDVYQHSLTVLRQAIALEDNGPDLVLRWAALLHDIGKPATRRHELNGGVSFHH--HEV 322
Query: 832 RGMAPTQQLSERLKVPR----DYQQLALIACREH 921
G ++ LK + D QL + R H
Sbjct: 323 VGAKMVRKRMRALKYAKQLVDDVSQLVYLHLRFH 356
>gi|1944582|emb|CAB08094| (Z94121) pcnA [Mycobacterium tuberculosis]
Length = 480
Score = 102 bits (251), Expect = 8e-21
Identities = 106/304 (34%), Positives = 152/304 (49%), Gaps = 30/304 (9%)
Frame = +1
Query: 10 YLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL------GFKAVGRDFPVFLHPKTGEE 171
YLVGG+VRDALLG+ + D D+ A P ++ + G +F K+
Sbjct: 40 YLVGGSVRDALLGRLSPDLDFTT-DARPERVQEIVRPWADAVWDTGIEFGTVGVGKSDHR 98
Query: 172 FALARTERKNGHGYRGFIVNADPTVT----LEQDLQRRDFTINAIAHDQTND---TLIDP 330
+ T R + + V+ P V LE DL RRDFT NA+A T +DP
Sbjct: 99 MEIT-TFRADSYDR----VSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDP 153
Query: 331 YGGVNDLEQRIL---RHISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAAS 501
GG+ L ++L S +F +DPLR+LRAARF+++ LGF++AP + EMA
Sbjct: 154 LGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQ---LGFAVAPRVRAAIEEMAP- 209
Query: 502 GELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNAL-YGVPQHADYHPE 678
+L + ER+ EL + L PAA + + VVLPE+ + + +H H
Sbjct: 210 -QLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAIDEH---HQH 265
Query: 679 IDTGLHQELVSDMAAKLAPG--DMLIGFAALCHDLGKALTPRATWPHHP-------MHEQ 831
D H V A L D+++ +AAL HD+GK T R H P HE
Sbjct: 266 KDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRR----HEPDGGVSFHHHEV 321
Query: 832 RGMAPTQQLSERLKVPR----DYQQLALIACREH 921
G ++ LK + D QL + R H
Sbjct: 322 VGAKMVRKRMRALKYSKQMIDDISQLVYLHLRFH 355
>gi|4377160|gb|AAD18983| (AE001665) Poly A Polymerase [Chlamydia
pneumoniae]
Length = 410
Score = 99.1 bits (243), Expect = 7e-20
Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 6/210 (2%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL--GFKAVGRDFPVFLHPKTGEEFA 177
++Y VGG VRD L+ +P D D + A P + ++ ++G F + + + G F
Sbjct: 22 QAYFVGGCVRDMLMNRPLEDID-IATNASPTIVSTIFPDVISIGVAFGIIVVKQDGRLFE 80
Query: 178 LARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQ 357
+A T R +G G + ++ +D RRDFT+N + +D D + D G D+E+
Sbjct: 81 VA-TFRSDGEYKDGRHPDRIIFSSMREDALRRDFTVNGMYYDPFEDKVFDFVEGTRDIEK 139
Query: 358 RILR---HISPAFAEDPLRVLRAARFMARLAPLGFSIAPET-LTMMREMAASGELNSLIP 525
+++R H F+ED LR+LRA RF + LGF++ P T +++E A +NS+ P
Sbjct: 140 KVIRAIGHPRLRFSEDKLRILRAIRFS---SSLGFTLDPTTERAIIKE--APALVNSVSP 194
Query: 526 ERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPEL 633
ERIW+EL + L QP L L + L + PEL
Sbjct: 195 ERIWQELKKMLK-RQPYGALSLLLKLKVLIFIFPEL 229
>gi|2983086 (AE000689) poly A polymerase [Aquifex aeolicus]
Length = 824
Score = 98.3 bits (241), Expect = 1e-19
Identities = 80/224 (35%), Positives = 122/224 (53%), Gaps = 18/224 (8%)
Frame = +1
Query: 1 MKSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFK--AVGRDFPVF--LHPKTGE 168
+++Y+VGG VRD LLG+ D D+VV G + L + FP F H K G+
Sbjct: 452 LRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGK 511
Query: 169 ---EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIA---HDQTNDTLIDP 330
EFA AR E + G +P +L++DL RRDFTINA+A + + TLID
Sbjct: 512 LKLEFATARRET---YPRPGAYPKVEP-ASLKEDLIRRDFTINAMAISVNLEDYGTLIDY 567
Query: 331 YGGVNDLEQRILRHISP-AFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGE 507
+GG+ DL+ +++R + P +F EDP+R+LRA RF R L F ++ T ++++ G
Sbjct: 568 FGGLRDLKDKVIRVLHPVSFIEDPVRILRALRFAGR---LNFKLSRSTEKLLKQAVNLGL 624
Query: 508 LNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVL-------PELNALYGVPQHAD 666
L R+ E+ +L + L R LE ++ L LY + + D
Sbjct: 625 LKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKVVD 684
Query: 667 YH 672
+H
Sbjct: 685 WH 686
>gi|3650360|emb|CAA77045| (Y18131) polynucleotide
adenylyltransferase [Pseudomonas putida]
Length = 463
Score = 95.2 bits (233), Expect = 1e-18
Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 17/208 (8%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHM--ESLGFKAVGRDFPVFLHPKTGEEFA 177
++YLVGG VRD +LG D D V A P + E + +GR F + +H G E
Sbjct: 58 QAYLVGGCVRDLMLGITPKDFD-VATSATPEQVRAEFRNARIIGRRFKL-VHVHFGREII 115
Query: 178 LARTER------------KNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTL 321
T R ++ H G I+ + TLE+D QRRDFTINA+ +D ++ +
Sbjct: 116 EVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQRRDFTINALYYDPVSERI 175
Query: 322 IDPYGGVNDLEQRILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREM 492
+D GV+D+ R+LR I + + EDP+R+LRA RF A+ L F I T +R +
Sbjct: 176 LDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK---LDFGIEKHTYLPIRGL 232
Query: 493 AASGELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLP 627
A L + P R+++E + Q A L + E + P
Sbjct: 233 APM--LREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP 275
>gi|3913200|sp|Q47907|CCA_FRANO TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|930293|gb|AAD15236| (L17003) cca
gene product [Francisella tularensis (var. novicida)]
Length = 84
Score = 94.4 bits (231), Expect = 2e-18
Identities = 47/84 (55%), Positives = 58/84 (68%)
Frame = +1
Query: 1 MKSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFAL 180
MK YLVGGAVRD LLG D DWVVVGA M + GF + +FPVF+HP+T +E+AL
Sbjct: 1 MKFYLVGGAVRDMLLGITPKDKDWVVVGATEDEMLANGFIKIAANFPVFIHPQTKQEYAL 60
Query: 181 ARTERKNGHGYRGFIVNADPTVTL 252
AR+E+K +GY GF VN +TL
Sbjct: 61 ARSEKKTRNGYHGFEVNFSKYITL 84
>gi|2507091|sp|P13685|PCNB_ECOLI POLY(A) POLYMERASE (PAP) (PLASMID
COPY NUMBER PROTEIN)
Length = 472
Score = 89.7 bits (219), Expect = 4e-17
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL--GFKAVGRDFPVFLHPKTGEEFA 177
+++LVGG VRD LLG+ D D V A P + L + VGR F + H G E
Sbjct: 68 EAWLVGGGVRDLLLGKKPKDFD-VTTNATPEQVRKLFRNCRLVGRRFRL-AHVMFGPEII 125
Query: 178 LARTERKNGH-------------GYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDT 318
T R GH G G ++ + ++E+D QRRDFTIN++ + + T
Sbjct: 126 EVATFR--GHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFT 183
Query: 319 LIDPYGGVNDLEQRILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMRE 489
+ D GG+ DL+ ++R I + EDP+R+LRA RF A+ LG I+PET +
Sbjct: 184 VRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK---LGMRISPETAEPIPR 240
Query: 490 MAASGELNSLIPERIWKE 543
+A LN + P R+++E
Sbjct: 241 LATL--LNDIPPARLFEE 256
>gi|1786336 (AE000123) poly(A) polymerase I [Escherichia coli]
Length = 454
Score = 89.7 bits (219), Expect = 4e-17
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL--GFKAVGRDFPVFLHPKTGEEFA 177
+++LVGG VRD LLG+ D D V A P + L + VGR F + H G E
Sbjct: 50 EAWLVGGGVRDLLLGKKPKDFD-VTTNATPEQVRKLFRNCRLVGRRFRL-AHVMFGPEII 107
Query: 178 LARTERKNGH-------------GYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDT 318
T R GH G G ++ + ++E+D QRRDFTIN++ + + T
Sbjct: 108 EVATFR--GHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFT 165
Query: 319 LIDPYGGVNDLEQRILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMRE 489
+ D GG+ DL+ ++R I + EDP+R+LRA RF A+ LG I+PET +
Sbjct: 166 VRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK---LGMRISPETAEPIPR 222
Query: 490 MAASGELNSLIPERIWKE 543
+A LN + P R+++E
Sbjct: 223 LATL--LNDIPPARLFEE 238
>gi|628784|pir||S45212 plasmid copy number control protein -
Escherichia coli >gi|473802|dbj|BAA05591| (D26562)
'plasmid copy number control protein pcnB' [Escherichia
coli]
Length = 414
Score = 89.7 bits (219), Expect = 4e-17
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL--GFKAVGRDFPVFLHPKTGEEFA 177
+++LVGG VRD LLG+ D D V A P + L + VGR F + H G E
Sbjct: 10 EAWLVGGGVRDLLLGKKPKDFD-VTTNATPEQVRKLFRNCRLVGRRFRL-AHVMFGPEII 67
Query: 178 LARTERKNGH-------------GYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDT 318
T R GH G G ++ + ++E+D QRRDFTIN++ + + T
Sbjct: 68 EVATFR--GHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFT 125
Query: 319 LIDPYGGVNDLEQRILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMRE 489
+ D GG+ DL+ ++R I + EDP+R+LRA RF A+ LG I+PET +
Sbjct: 126 VRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK---LGMRISPETAEPIPR 182
Query: 490 MAASGELNSLIPERIWKE 543
+A LN + P R+++E
Sbjct: 183 LATL--LNDIPPARLFEE 198
>gi|482420|pir||A45922 nucleic acid-binding protein pcnB -
Escherichia coli >gi|147117 (M20574) plasmid copy number
protein [Escherichia coli]
Length = 410
Score = 89.3 bits (218), Expect = 6e-17
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL--GFKAVGRDFPVFLHPKTGEEFA 177
+++LVGG VRD LLG+ D D V A P + L + VGR F + H G E
Sbjct: 10 EAWLVGGGVRDLLLGKKPKDFD-VTTNATPEQVAKLFRNCRLVGRRFRL-AHVMFGPEII 67
Query: 178 LARTERKNGH-------------GYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDT 318
T R GH G G ++ + ++E+D QRRDFTIN++ + + T
Sbjct: 68 EVATFR--GHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFT 125
Query: 319 LIDPYGGVNDLEQRILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMRE 489
+ D GG+ DL+ ++R I + EDP+R+LRA RF A+ LG I+PET +
Sbjct: 126 VRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK---LGMRISPETAEPIPR 182
Query: 490 MAASGELNSLIPERIWKE 543
+A LN + P R+++E
Sbjct: 183 LATL--LNDIPPARLFEE 198
>gi|1172043|sp|P44439|PCNB_HAEIN PROBABLE POLY(A) POLYMERASE (PAP)
>gi|1075158|pir||B64046 plasmid copy number control
protein (pcnB) homolog - Haemophilus influenzae (strain
Rd KW20) >gi|1573011 (U32691) poly(A) polymerase (pcnB)
[Haemophilus influenzae Rd]
Length = 452
Score = 88.2 bits (215), Expect = 1e-16
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 16/214 (7%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL---GFKAVGRDFPVFLHPKTGEEF 174
++Y+VGG +RD LLG+ D D V A P ++++ + VGR F + H G +
Sbjct: 49 EAYIVGGCIRDLLLGKKPKDFD-VATNARPEQIQNIFQRQCRLVGRRFRL-AHIMFGRDI 106
Query: 175 ALARTERKNGHGYR----------GFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLI 324
T R N R G ++ + T+EQD RRDFT+NA+ ++ ++TL
Sbjct: 107 IEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLR 166
Query: 325 DPYGGVNDLEQRILRHIS---PAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMA 495
D + G+ DL+ LR I + EDP+R+LR+ RFMA+ L + + +RE+A
Sbjct: 167 DYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAK---LDMFLEKPSEQPIRELA 223
Query: 496 ASGELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALY 645
L ++ P R++ E + L Q LR E + P L+A +
Sbjct: 224 PL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSAYF 271
>gi|1001282|dbj|BAA10528| (D64003) polyA polymerase [Synechocystis
sp.]
Length = 416
Score = 87.4 bits (213), Expect = 2e-16
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDW-VVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFALART 189
LVGGAVRDALLG+ DW VV + S F V + A
Sbjct: 28 LVGGAVRDALLGRRREYLDWDFVVPSGAIETASAIASRYRAGFVVLDKARHIARVVFA-- 85
Query: 190 ERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQRILR 369
HG F ++LEQDL RRDFT+NAIA++ + LIDP GV DL++ L+
Sbjct: 86 -----HGTVDFAQQEG--MSLEQDLARRDFTVNAIAYNFQQNKLIDPMAGVGDLQRGQLK 138
Query: 370 HISPA-FAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELNSLIPERIWKEL 546
++ A+DPLR+LRA R + A L F++ P+T T++RE+A + ++ ER+ E
Sbjct: 139 MVAAVNLADDPLRLLRAYR---QAAQLQFTLDPDTRTVLRELAP--RIKTVAAERVQAEF 193
Query: 547 SRSLAYTQPAAFL 585
+ L + + +L
Sbjct: 194 NYLLGSPRGSQWL 206
>gi|3328838|gb|AAC68007.1| (AE001314) PolyA Polymerase [Chlamydia
trachomatis]
Length = 425
Score = 87.0 bits (212), Expect = 3e-16
Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 6/208 (2%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFK---AVGRDFPVFLHPKTGEEF 174
++Y+VGG +RD LL D D + A P +++L FK VG+ F + H + +
Sbjct: 59 EAYIVGGCIRDLLLKTEPKDFD-ISTSAKPEEVKTL-FKNCILVGKRFRL-AHIRFPNQI 115
Query: 175 ALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLE 354
T R + I + + E+D+ RRDFTIN + +D + + +ID GGV DL+
Sbjct: 116 IEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPSAEIIIDYTGGVEDLK 175
Query: 355 QRILRHISP---AFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELNSLIP 525
R LR I F +DP+R+LR + ++R A F++ P+TL ++E + EL
Sbjct: 176 NRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA---FTVDPKTLEALQE--SCHELVKSSQ 230
Query: 526 ERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLP 627
R+++E+ + L+ + F LE++ P
Sbjct: 231 PRVFEEIIKVLSSGESTIFFQLASEHRVLEILFP 264
>gi|6458711|gb|AAF10560.1|AE001950_12 (AE001950) tRNA
nucleotidyltransferase, putative [Deinococcus
radiodurans]
Length = 374
Score = 86.2 bits (210), Expect = 5e-16
Identities = 83/210 (39%), Positives = 105/210 (49%), Gaps = 18/210 (8%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPK----------- 159
LVGGAVRDALLGQ D D VV G D +E+L A+ P HP
Sbjct: 36 LVGGAVRDALLGQTPLDLDIVVAGQDGQGVEAL---ALASGLPFVFHPAFENATLTLPDG 92
Query: 160 TGEEFALARTERKNGHGYRGFIVNADPTV-TLEQDLQRRDFTINAIAHDQTND---TLID 327
G + AR E G N +P TL DL+RRDF +NA+A D L+D
Sbjct: 93 RGADLVRARREHYPQPGR-----NPEPLPGTLHDDLRRRDFGLNALALRLREDGAPELLD 147
Query: 328 PYGGVNDLEQRILRHI-SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASG 504
GG+ DLE+R LR + + ED R++RAAR ARL APE L + + A
Sbjct: 148 VVGGLRDLERRELRPLHDRSLHEDASRLVRAARLAARLE---LHPAPELLAQVPDALALA 204
Query: 505 ELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVV--LPELNAL 642
+ R+W EL LA +P L A ++ LP L AL
Sbjct: 205 D----DTPRLWAELKLLLAEPRPGQAARVLDGWGAGTLLPGLPLLEAL 248
>gi|4377290|gb|AAD19102| (AE001676) Poly A Polymerase [Chlamydia
pneumoniae]
Length = 430
Score = 83.1 bits (202), Expect = 4e-15
Identities = 67/213 (31%), Positives = 107/213 (49%), Gaps = 6/213 (2%)
Frame = +1
Query: 7 SYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFK---AVGRDFPVFLHPKTGEEFA 177
+Y+VGG +RD LL D D + A P ++++ FK VG+ F + H + ++
Sbjct: 59 AYIVGGCIRDLLLNTTPKDFD-ISTSAKPEEIKAI-FKNCILVGKRFRL-AHIRFSKQII 115
Query: 178 LARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQ 357
T R I + T E+D+ RRDFTIN + +D ++ +ID GGVNDL
Sbjct: 116 EVSTFRSGSTDEDVLITKDNLWGTPEEDVLRRDFTINGLFYDPEHEEIIDYTGGVNDLRN 175
Query: 358 RILRHISPAFA---EDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELNSLIPE 528
R LR I F +DP+R+LR + ++R F++ ET T +A EL
Sbjct: 176 RYLRTIGDPFTRFKQDPVRMLRLLKILSRSP---FTV--ETQTQEALIACRQELIKSSQA 230
Query: 529 RIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALY 645
R+++EL + L F L + LE++ P ++ +
Sbjct: 231 RVFEELIKMLNSGAAKNFFQLLIENHLLEILFPYMDKAF 269
>gi|3322888 (AE001234) polynucleotide adenylyltransferase (pcnB)
[Treponema pallidum]
Length = 370
Score = 78.0 bits (189), Expect = 1e-13
Identities = 53/140 (37%), Positives = 82/140 (57%), Gaps = 6/140 (4%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL--GFKAVGRDFPVFLHPKTGEEFA 177
++Y+VGGAVRD + G+ D D +V GA P+ + L + +GR F + +H G +
Sbjct: 49 ETYIVGGAVRDLVAGRTPKDFD-IVTGAVPSRIRRLFRNSRIIGRRFRI-VHVSCGSQLY 106
Query: 178 LARTERKN-GHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLE 354
T R G G + TLE+D RRDF++NA+ +D + +ID GG+ DL+
Sbjct: 107 EVSTFRSRVGEG------SVCVPGTLEEDAWRRDFSVNALYYDPLRNVVIDCVGGMVDLK 160
Query: 355 QRILRHISP---AFAEDPLRVLRAAR 423
+R +R + P F EDP+R+LRA +
Sbjct: 161 RRRVRPLIPLRSIFVEDPVRMLRALK 186
>gi|1709578|sp|P42977|PAPS_BACSU POLY(A) POLYMERASE (PAP)
>gi|1146238 (L47709) poly(A) polymerase [Bacillus
subtilis] >gi|2634663|emb|CAB14161| (Z99115) poly(A)
polymerase [Bacillus subtilis]
Length = 397
Score = 77.6 bits (188), Expect = 2e-13
Identities = 53/156 (33%), Positives = 89/156 (56%), Gaps = 5/156 (3%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAV--GRDFPVFLHPKTGEEFA 177
++Y VGGAVRD+ + + GD D + A P +E L + V G++ + E +
Sbjct: 21 QAYFVGGAVRDSYMKRTIGDVD-IATDAAPDQVERLFQRTVDVGKEHGTIIVLWEDETYE 79
Query: 178 LARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQ 357
+ ++ + +LE+DL+RRD TINA+A + ++D +GG D++Q
Sbjct: 80 VTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAM-TADGKVLDYFGGKKDIDQ 138
Query: 358 RILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPET 471
+++R + F ED LR+LRA RFM++ LGF+++PET
Sbjct: 139 KVIRTVGKPEDRFQEDALRMLRAVRFMSQ---LGFTLSPET 176
>gi|3322543 (AE001208) polynucleotide adenylyltransferase (pcnA)
[Treponema pallidum]
Length = 478
Score = 77.3 bits (187), Expect = 2e-13
Identities = 68/213 (31%), Positives = 97/213 (44%), Gaps = 5/213 (2%)
Frame = +1
Query: 10 YLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAV--GRDFPVFLHPKTGEEFALA 183
Y+VGGAVRD LL + A D D + A P + L + V G + G
Sbjct: 25 YVVGGAVRDFLLNRSAHDWD-LATDAPPERVRMLFRRTVPTGIEHGTVTILFRGHSIECT 83
Query: 184 RTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQRI 363
++ + R + +E DL RRDFT+NA A + +ID GG DL +
Sbjct: 84 TFRVESDYSDRRHPDSVCFAARIEDDLARRDFTVNAFAAALPSGEIIDVCGGYADLRNGL 143
Query: 364 LRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELNSLIPERI 534
+ + A F+ED LR LRA RF A+L+ FSI E T +A + ER+
Sbjct: 144 ICSVGDAHARFSEDALRPLRAVRFAAQLS---FSI--EARTREAIIALRAHTARISRERV 198
Query: 535 WKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYG 648
ELS+ L +P+ L + L + P L + G
Sbjct: 199 RDELSKMLCTPRPSIALRLMEETGLLHTLFPALAQVCG 236
>gi|2313761|gb|AAD07702.1| (AE000578) poly(A) polymerase (papS)
[Helicobacter pylori 26695]
Length = 402
Score = 76.9 bits (186), Expect = 3e-13
Identities = 80/224 (35%), Positives = 111/224 (48%), Gaps = 16/224 (7%)
Frame = +1
Query: 10 YLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFALART 189
YLVGG VRD L+G D D E L + R F V +TG + T
Sbjct: 23 YLVGGCVRDYLMGITPKDYDLTSNALVNESKELL----LKRHFRVL---ETGIKHGTI-T 74
Query: 190 ERKNGHGY--------RGFIVNADP-----TVTLEQDLQRRDFTINAIAHDQTNDTLIDP 330
KN Y +G I + P +V L DL+RRDF++NAIA+ T LIDP
Sbjct: 75 ALKNHQSYEITTFRIEKGHIKHRKPKELVFSVHLTDDLKRRDFSMNAIAYSPTKG-LIDP 133
Query: 331 YGGVNDLEQRILRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAAS 501
+ G N +E +++ + A F ED LR+LR+ RF A LGF IAP T + A
Sbjct: 134 FKGQNAIENQMIECVGEARLRFFEDALRILRSLRFS---ATLGFKIAPNTKEAV--FACK 188
Query: 502 GELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEI 681
L L ER+ EL++ L A+ LE+V+ E G ++A ++ E+
Sbjct: 189 DLLKHLSKERLQSELNKLLMGKN--AYEVAKEYQEILELVIQEKIENLGFLKNAPFNLEL 246
>gi|755607 (L38424) polyA polymerase [Bacillus subtilis]
Length = 377
Score = 76.5 bits (185), Expect = 4e-13
Identities = 54/156 (34%), Positives = 86/156 (54%), Gaps = 5/156 (3%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKA--VGRDFPVFLHPKTGEEFA 177
++Y VGGAVRD+ + + GD D + A P +E L + VG+D ++ + E
Sbjct: 21 QAYFVGGAVRDSYMKRTIGDVD-IATDAAPDQVERLFQRTVDVGKDESDYVDFRRPSEVQ 79
Query: 178 LARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQ 357
+LE+DL+RRD TINA+A + ++D +GG D++Q
Sbjct: 80 FIS--------------------SLEEDLKRRDLTINAMAM-TADGKVLDYFGGKKDIDQ 118
Query: 358 RILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPET 471
+++R + F ED LR+LRA RFM++ LGF+++PET
Sbjct: 119 KVIRTVGKPEDRFQEDALRMLRAVRFMSQ---LGFTLSPET 156
>gi|2984364 (AE000776) poly A polymerase [Aquifex aeolicus]
Length = 512
Score = 76.1 bits (184), Expect = 6e-13
Identities = 95/305 (31%), Positives = 145/305 (47%), Gaps = 50/305 (16%)
Frame = +1
Query: 10 YLVGGAVRDALLGQPAG---DCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFAL 180
++VGG VRD +LG+P G D D++ ADP + K +G F VF K G F +
Sbjct: 38 FIVGGWVRDRILGEPVGYNIDVDFLTT-ADPVELAKNFAKRIGGHFFVF--EKRG--FLI 92
Query: 181 ARTERKN------GHGYR---GFIVNADPTVTLEQDLQRRDFTINAIAHDQTN------- 312
R + + YR + D L +DL+ RDFT NAIA + +
Sbjct: 93 KRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAK 152
Query: 313 DTLI-DPYGGVNDLEQRILRHIS-PAFAEDPLRVLRAARFM----ARLAPLGFSIAPETL 474
T++ DP GG+ DLEQ +LR +S DP+RVLR R +L + E
Sbjct: 153 QTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDP 212
Query: 475 TMMREMAASGELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVP 654
++ + A ERI EL + + + L LE ++PE+ L V
Sbjct: 213 RIVLKSAV---------ERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVK 263
Query: 655 QHADYH-------------------PEIDTGLHQELVSDMAAKLAPGDM----LIGFAAL 765
++H + L EL+ + K G+ L+ + AL
Sbjct: 264 DQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGAL 323
Query: 766 CHDLGKALT--PRATWPHHPMHEQRGMAPTQQLSERLKVPRDYQQLALIACREHL 924
HD+GK T R H++ G +++ ERL+ + + R HL
Sbjct: 324 FHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHL 378
>gi|559391|emb|CAA57198| (X81440) ORFIII [Acidaminococcus
fermentans]
Length = 256
Score = 75.7 bits (183), Expect = 7e-13
Identities = 66/180 (36%), Positives = 96/180 (52%), Gaps = 17/180 (9%)
Frame = +1
Query: 247 TLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQRILRHISP---AFAEDPLRVLRA 417
TLE+DL RRDFTINA+A DQ + D + G++DL R+LR + F+ED LR+ RA
Sbjct: 25 TLEEDLSRRDFTINALAVDQEGH-ITDCFHGLDDLRGRVLRTVGDPDRRFSEDALRMFRA 83
Query: 418 ARFMARLAPLGFSIAPETLTMMREMAASGELNSLIPERIWKELSRSLAYTQP-------- 573
RF+ + LGF+ P L + ++ L ER+ EL++ L T
Sbjct: 84 CRFVGQ---LGFAPDPAILPAIGRNLQ--KVPGLSLERVRTELNKLLMGTYAGEGMDLMV 138
Query: 574 ----AAFLHTLRTVNALEVV--LPELNALYGVPQHADYHPEIDTGLHQELVSDMAAKLAP 735
AA +R E V LPEL L G+ Q+ +HP D H + D +
Sbjct: 139 KSGLAAESCRVRRKGQYETVPILPELTHLVGLGQNPQFHP-YDVWKHTAVALDKGDR--- 194
Query: 736 GDMLIGFAALCHDLGKA 786
+ +G+ L HD+ +A
Sbjct: 195 -SLEVGWGILLHDVPRA 210
>gi|1653244|dbj|BAA18159| (D90912) polyA polymerase [Synechocystis
sp.]
Length = 942
Score = 74.9 bits (181), Expect = 1e-12
Identities = 72/165 (43%), Positives = 96/165 (57%), Gaps = 39/165 (23%)
Frame = +1
Query: 10 YLVGGAVRDALLGQPAG----------DCDWVVVGADPAHMESLGFK---AVGRDFPVFL 150
YLVGGAVRD L G D D VV G G + A+ D+P
Sbjct: 513 YLVGGAVRDLWLRHSQGAEKHQNITFQDIDLVVDGFHATADVGAGVELAQALQGDYPGAR 572
Query: 151 HPKTGE-------------------EFALARTERKNGHGYRGFIVNADPTV---TLEQDL 264
GE + A ARTE + Y A+P V ++ QDL
Sbjct: 573 LSVHGEFQTAALLWHKDPQLDTLWVDIATARTEF---YPYPA----ANPEVEASSIRQDL 625
Query: 265 QRRDFTINAIAHDQTNDT---LIDPYGGVNDLEQRILRHI-SPAFAEDPLRVLRAARFMA 432
RRDFTINA++ TN L+D +GG+NDL+ + +R + + +F EDP R+ RA RF+
Sbjct: 626 YRRDFTINALSIRLTNPNPGKLLDFFGGMNDLQSQQVRVLHANSFIEDPTRIYRAVRFVV 685
Query: 433 RLAPLGFSIAPETLTMMREMAASG 504
R LGF + P+T T +R ASG
Sbjct: 686 R---LGFELEPQTETYIRYAIASG 706
>gi|4981239|gb|AAD35797.1|AE001742_12 (AE001742) tRNA nucleotidyl
transferase-related protein [Thermotoga maritima]
Length = 863
Score = 73.4 bits (177), Expect = 4e-12
Identities = 68/210 (32%), Positives = 103/210 (48%), Gaps = 12/210 (5%)
Frame = +1
Query: 1 MKSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMES----LGFKAVGRD----FPVFLHP 156
M Y+VGG VRD LLG D D VV G E L K V D +FL
Sbjct: 470 MPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKG 529
Query: 157 KTGEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIA---HDQTNDTLID 327
+ A AR E + + T+++DL RRDFTINA+A + + LID
Sbjct: 530 GLRIDIATARLEYYESPAKLPDVEMS----TIKKDLYRRDFTINAMAIKLNPKDFGLLID 585
Query: 328 PYGGVNDLEQRILRHI-SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASG 504
+GG DL++ ++R + + +F +DP R+LRA RF R F I T ++++ G
Sbjct: 586 FFGGYRDLKEGVIRVLHTLSFVDDPTRILRAIRFEQR---FDFRIEETTERLLKQAVEEG 642
Query: 505 ELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPE 630
L R+ +EL + L P + + + ++ + P+
Sbjct: 643 YLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPK 684
>gi|4155144 (AE001491) POLYNUCLEOTIDE ADENYLYLTRANSFERASE
[Helicobacter pylori J99]
Length = 402
Score = 73.0 bits (176), Expect = 5e-12
Identities = 70/183 (38%), Positives = 92/183 (50%), Gaps = 16/183 (8%)
Frame = +1
Query: 10 YLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFALART 189
YLVGG +RD L+G D D E L + DF V +TG + T
Sbjct: 23 YLVGGCMRDCLMGITPKDYDLTSNALVNESKELL----LKHDFRVL---ETGIKHGTI-T 74
Query: 190 ERKNGHGY--------RGFIVNADP-----TVTLEQDLQRRDFTINAIAHDQTNDTLIDP 330
KN Y +G I + P + L DL+RRDF++NAIA+ T LIDP
Sbjct: 75 ALKNHQSYEITTFRMEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAYSPTKG-LIDP 133
Query: 331 YGGVNDLEQRILRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAAS 501
+ G N +E + + + A F ED LR+LRA RF A LGF IA T + A
Sbjct: 134 FKGQNAIENQTIECVGEARLRFFEDALRILRALRFS---ATLGFKIAASTKRAV--FACK 188
Query: 502 GELNSLIPERIWKELSRSL 558
L L ER+ EL++ L
Sbjct: 189 DLLKHLSKERLQSELNKLL 207
>gi|2688624 (AE001170) polynucleotide adenylyltransferase (papS)
[Borrelia burgdorferi]
Length = 410
Score = 72.6 bits (175), Expect = 6e-12
Identities = 64/159 (40%), Positives = 86/159 (53%), Gaps = 12/159 (7%)
Frame = +1
Query: 10 YLVGGAVRDALLGQPAGDCDWVVVGADPAHMESL-------GFK--AVGRDFPVFLHPKT 162
YLVGGA+RD LL + D D+ A P + +L G K +G + K
Sbjct: 25 YLVGGALRDLLLNKQPYDFDFAT-NATPEEIITLFPNNIKTGIKHGTIG-----IIFNKK 78
Query: 163 GEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGV 342
E R E++ + V + T L +DL+RRDFTINAIA D N +ID Y G
Sbjct: 79 IFEITTYRIEKEYENNRAPKQV--EYTKNLLKDLERRDFTINAIAMDIFNFNIIDCYNGK 136
Query: 343 NDLEQRILRHI---SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMR 486
DL ++I+R I + ED LR+LRAARF + L F+I TL M+
Sbjct: 137 KDLNKKIIRCIGNPNKRLEEDALRILRAARFS---STLNFNIEKNTLISMK 184
>gi|4929563|gb|AAD34042.1|AF151805_1 (AF151805) CGI-47 protein [Homo
sapiens]
Length = 405
Score = 61.7 bits (147), Expect = 1e-08
Identities = 60/194 (30%), Positives = 85/194 (42%), Gaps = 13/194 (6%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWVVVGADPAHM----ESLGFKAVGR------DFPVFLHPKT 162
+ GGAVRD L G D D+ A P M +S G + + LH +
Sbjct: 32 IAGGAVRDLLNGVKPQDIDFATT-ATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEEN 90
Query: 163 GEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGGV 342
E L +G + T ++D +RRD TIN++ + TL D + G
Sbjct: 91 FEITTLRIDVTTDGRH-----AEVEFTTDWQKDAERRDLTINSMFLG-FDGTLFDYFNGY 144
Query: 343 NDLEQRILR---HISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELN 513
DL+ + +R H ED LR+LR RF R+ PETL + E A L
Sbjct: 145 EDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKG--LA 202
Query: 514 SLIPERIWKELSRSLAYTQPAAFLHTL 594
+ ERIW EL + L +H +
Sbjct: 203 GISGERIWVELKKILVGNHVNHLIHLI 229
>gi|4539282|emb|CAB39906.1| (AL049498) putative trna
nucleotidyltransferase precursor [Schizosaccharomyces
pombe]
Length = 484
Score = 57.0 bits (135), Expect = 3e-07
Identities = 66/209 (31%), Positives = 98/209 (46%), Gaps = 28/209 (13%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWV---VVGADPA-----------------HMESLGFKAVGR 132
L GG VRD LLG + D D V G D A + ++LG V
Sbjct: 39 LAGGWVRDKLLGLSSDDLDVTLNKVTGVDFANSIFEYVHSLDSDSVIPYKDALGKLTVNP 98
Query: 133 DFPVFLHPKTGEEFALARTE---RKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHD 303
D L T F L R + + I + P T+E D RRDFT+N + +
Sbjct: 99 DQSKHLETATLSLFDLDIDFVGLRAESYDDKSRIPSVTPG-TVETDALRRDFTVNTLFFN 157
Query: 304 QTNDTLID-PYGGVNDLEQRIL-RHISP--AFAEDPLRVLRAARFMARLAPLGFSIAPET 471
+ + D G DL+ ++L ISP +F EDPLR+LR RF +R F+I P
Sbjct: 158 IRTEKIEDITKRGYKDLQTKVLVTPISPLQSFLEDPLRILRGIRFASRFE---FTIDPSV 214
Query: 472 LTMMREMAASGELNSLI-PERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNA 639
++ +++ + ER+ +E+ + L L L + N + L A
Sbjct: 215 VSAIQDPKVCKAFEKKVSKERVGEEIEKMLKGANAKLALQLLYSTNTYQFTFDTLPA 271
>gi|6321016|ref|NP_011095.1|CCA1| tRNA nucleotidyltransferase (tRNA
CCA-pyrophosphorylase); Cca1p
>gi|135969|sp|P21269|CCA1_YEAST TRNA
NUCLEOTIDYLTRANSFERASE PRECURSOR (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|83574|pir||S11180 tRNA
nucleotidyltransferase - yeast (Saccharomyces
cerevisiae) >gi|172994 (M59870) transfer RNA
nucleotidyltransferase [Saccharomyces cerevisiae]
>gi|603409 (U18922) Cca1p: tRNA
nucleotidyltransferase(tRNA CCA-pyrophosphorylase)
[Saccharomyces cerevisiae]
Length = 546
Score = 55.4 bits (131), Expect = 9e-07
Identities = 43/125 (34%), Positives = 65/125 (51%), Gaps = 5/125 (4%)
Frame = +1
Query: 247 TLEQDLQRRDFTINAIAHDQTNDTLID-PYGGVNDLEQRILRHISPA---FAEDPLRVLR 414
T E+D RRD T+NA+ ++ + D G+ DL+ +LR PA F +DPLRVLR
Sbjct: 164 TPEEDALRRDATLNALFYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLR 223
Query: 415 AARFMARLAPLGFSIAPETLTMMREMAASGELNSLIP-ERIWKELSRSLAYTQPAAFLHT 591
RF +R F+I PE + M + + NS I ER+ E+ + L P L
Sbjct: 224 LIRFASR---FNFTIDPEVMAEMGDPQINVAFNSKISRERVGVEMEKILVGPTPLLALQL 280
Query: 592 LRTVNALEVV 621
++ + V+
Sbjct: 281 IQRAHLENVI 290
>gi|3860586|emb|CAA14487| (AJ235270) POLY(A) POLYMERASE (pcnB)
[Rickettsia prowazekii]
Length = 387
Score = 53.1 bits (125), Expect = 5e-06
Identities = 59/206 (28%), Positives = 93/206 (44%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAH----MESLGFKAV--GRDFPVFLHPKTG 165
+S L+GG VRDALL + D D + P + S K + G F
Sbjct: 27 QSRLIGGCVRDALLDKDTYDID-IATNLMPGEAINILSSANIKIIPTGLKFGTITAILNN 85
Query: 166 EEFALARTERK---NGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYG 336
E+F + + NG + I + D +D RRDFTINA+++ + + D +
Sbjct: 86 EKFEITTLRKDIECNGR-HAKVIFSKD----FAEDAARRDFTINALSYCPFKNEIYDYFD 140
Query: 337 GVNDLEQRILRHISPAF---AEDPLRVLRAARFMARLA-PLGFSIAPETLTMMREMAASG 504
G DL++ + I AF ED LR+LR RF + A L + T+
Sbjct: 141 GFKDLQRAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQLDYESFKACDTL------KY 194
Query: 505 ELNSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVV 621
L +L ERI E+ + + + L + + LE++
Sbjct: 195 GLKTLSRERIKSEIDKIIVSKRATQILEAMFKIGILELI 233
>gi|3877673|emb|CAB02125.1| (Z79757) Similar to B.subtilis Poly(A)
polymerase (SW:PAPS_BACSU) [Caenorhabditis elegans]
Length = 440
Score = 51.5 bits (121), Expect = 1e-05
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGR-----------DFPVFLHPK 159
+ GGAVRD L+ D D+ A P M+ L + + D LH K
Sbjct: 29 IAGGAVRDLLMNIRPADVDFAST-ATPTQMKVLIVFQISKKIYFIQEMFEEDKIRMLH-K 86
Query: 160 TGEEFALARTERKNGHGYR-----------GFIVNADPTVTLEQDLQRRDFTINAIAHDQ 306
GEE + + G + T + D RRD TIN++ D
Sbjct: 87 RGEEHGTITCRIDDCENFEITTLRVDIVCDGRRAQVEYTTDWQLDANRRDLTINSLFLD- 145
Query: 307 TNDTLIDPYGGVNDLEQRILRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLT 477
+ ++D +GG+ D+E R + + A ED LR+LR RF R++ E T
Sbjct: 146 LHGNVVDYFGGIRDIETRRIAFVGDARQRIQEDYLRILRYFRFFGRISD---CTEHEHDT 202
Query: 478 MMREMAASGELNSLIPERIWKELSR 552
+ + + + ERIW EL +
Sbjct: 203 IQAIVENKDGMAGISAERIWTELKK 227
>gi|3287692 (AC003979) Similar to tRNA adenylyltransferase gb|U15930
from Lupinus albus. EST gb|AA721797 comes from this
gene. [Arabidopsis thaliana]
Length = 555
Score = 50.8 bits (119), Expect = 2e-05
Identities = 68/235 (28%), Positives = 112/235 (46%), Gaps = 33/235 (14%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWVVVGADPAHM-------------ESLGFKAVGRDFPVFLH 153
+ GG VRD LLG+ + D D + + E G + R+ H
Sbjct: 112 VAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEEVQGDTVIERNPDQSKH 171
Query: 154 PKTGE--------EFALARTERKNGHGYRGFIVNADPTV---TLEQDLQRRDFTINAIAH 300
+T + +F R+E + + PT+ T + D RRD TIN++ +
Sbjct: 172 LETAKLRIYDQWIDFVNLRSEEYTEN-------SRIPTMKFGTAKDDAFRRDLTINSLFY 224
Query: 301 DQTNDTLID-PYGGVNDLEQRILRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPE 468
+ + + D G++DL+ + PA F +DPLRVLRA RF AR GF++ E
Sbjct: 225 NINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDDPLRVLRAVRFGAR---FGFTLDEE 281
Query: 469 TLTMMREMAASGEL-----NSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPEL 633
++E A+S E+ + ERI E+ ++ P + + L + VV
Sbjct: 282 ----LKEAASSEEVRVALGEKISRERIGNEIDLMISGNGPVSAVTYLSDLKLFSVV---- 333
Query: 634 NALYGVPQHADYHPEIDTGLHQELVSDM 717
+ +P A+ P + G L + M
Sbjct: 334 ---FALPSSAEPSPPENCGRRLALYAAM 358
>gi|2129851|pir||S65148 tRNA adenylyltransferase (EC 2.7.7.25) -
white lupine >gi|1139585 (U15930) tRNA
nucleotidyltransferase [Lupinus albus]
Length = 560
Score = 48.8 bits (114), Expect = 9e-05
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 28/187 (14%)
Frame = +1
Query: 13 LVGGAVRDALLGQPAGDCDWVV--------VGADPAHMESLGFKAVGRDFPVFLHPKTGE 168
+ GG VRD LLG+ D D + V ++ S+G +A G + +P +
Sbjct: 95 VAGGWVRDKLLGKECYDIDIALDKMMGTEFVDKVREYLLSIGEEAQGVCV-IESNPDQSK 153
Query: 169 EFALARTE-----------RKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTND 315
AR R + I + T E+D RRD TIN++ ++ D
Sbjct: 154 HLETARMRLFDMWIDFVNLRSEEYTDNSRIPSMQRFGTPEEDAYRRDLTINSLFYNINTD 213
Query: 316 TLID-PYGGVNDLEQ-RILRHISP--AFAEDPLRVLRAARFMARLAPLGFSIAPETLTMM 483
++ D G++DL+ +I+ + P F +DPLRV+RA RF AR F++ + +
Sbjct: 214 SVEDFTKRGISDLKSGKIVTPLPPKATFLDDPLRVVRAIRFGARFE---FTLDED----L 266
Query: 484 REMAASGELNSLIP-----ERIWKELSRSLAYTQP 573
++ AA E+ + ERI E+ ++ QP
Sbjct: 267 KQAAACDEVKDALAAKISRERIGTEIDLMISGNQP 301
>gi|6318263|emb|CAB60249.1| (AL132839) putative tRNA
nucleotidyltransferase precursor [Schizosaccharomyces
pombe]
Length = 534
Score = 46.1 bits (107), Expect = 6e-04
Identities = 36/103 (34%), Positives = 55/103 (52%), Gaps = 5/103 (4%)
Frame = +1
Query: 256 QDLQRRDFTINAIAHDQTNDTLIDPYG-GVNDLEQRILRH---ISPAFAEDPLRVLRAAR 423
+D RRD TINA+ ++ + T+ D G G+ DL +I+R F +DPLR +R R
Sbjct: 173 EDALRRDATINALFYNLKSKTVEDFTGKGLVDLSNKIIRTPLVADETFGDDPLRAVRCIR 232
Query: 424 FMARLAPLGFSIAPETLTMMREMAASGELNSLIP-ERIWKELSRSLAY 564
F + F+I ET+ ++ L S I ERI E+ + L +
Sbjct: 233 FATK---YDFNIHEETIKGLKNPELHERLRSSISRERIGVEVDKMLKH 277
>gi|281493|pir||S27736 hypothetical protein B - Thermus aquaticus
>gi|295398 (M33159) ORFB [Thermus thermophilus]
Length = 213
Score = 44.9 bits (104), Expect = 0.001
Identities = 58/188 (30%), Positives = 86/188 (44%), Gaps = 5/188 (2%)
Frame = +1
Query: 16 VGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGEEFALARTER 195
+GGAVRD LLG+ D D+ + + A E + G FP L PK G + L ER
Sbjct: 1 MGGAVRDLLLGRRPTDLDYAALDPEGA-AEEAKRRLGGSLFP--LDPKRG-HYRLVVGER 56
Query: 196 KNGHGYRGFIVNADPTV-TLEQDLQRRDFTINAIAHDQTNDTLIDPYGGVNDLEQRILRH 372
++ P LE+DL RRD+ +NA+ + G DL +R+L
Sbjct: 57 ---------TLDFTPLEGRLEEDLLRRDYRVNALL--WKGGAVFGLKGVEEDLRRRLLVP 105
Query: 373 I-SPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELN-SLIP--ERIWK 540
+ +D LR LR R A LGF + T + A + + +P ER+ +
Sbjct: 106 VREENLYQDHLRSLRGVRL---AATLGFGLPQRTREALGRHARFLQAHPEALPARERVKE 162
Query: 541 ELSRSLAYTQPAA 579
EL+R L + A+
Sbjct: 163 ELARLLLSPRAAS 175
>gi|6460913|gb|AAF12617.1|AE001826_86 (AE001826) hypothetical protein
[Deinococcus radiodurans]
Length = 413
Score = 44.1 bits (102), Expect = 0.002
Identities = 51/148 (34%), Positives = 64/148 (42%), Gaps = 15/148 (10%)
Frame = +1
Query: 610 LEVVLPELNALYGVPQHADYHPEIDTGLHQELVSDMAAKLAPG-----DMLIGFAALCHD 774
L VLP L L PQ ++H E D H LV A +L+ G + AA HD
Sbjct: 23 LRPVLPLLGELPHTPQDPEWHAEGDVATHSALVLARAHELSEGLDPFDRAALLLAAALHD 82
Query: 775 LGKALTPRATWPHHPMHEQRGMAPTQQLSERLKVPRDYQQLAL------IACREHLNVHR 936
+GKALT R E G + +L R R LA +A R L V
Sbjct: 83 IGKALTTR--------EEPEGSSGQIRLRSRQHARRGRDYLAYRLLDTGLAPRLILTVLE 134
Query: 937 L----SKLHDHTVYELLQRCDAFRRPERIAQLAIVCEADYRGR 1053
L LH EL + A R + L + +AD RGR
Sbjct: 135 LVAHHHSLHRAAESELGRGVFALARQVPLPLLVRLAKADARGR 177
>gi|4914379|gb|AAD32915.1|AC007584_13 (AC007584) putative poly(A)
polymerase [Arabidopsis thaliana]
Length = 241
Score = 43.4 bits (100), Expect = 0.004
Identities = 51/161 (31%), Positives = 87/161 (53%), Gaps = 33/161 (20%)
Frame = +1
Query: 7 SYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKA--VGRDFPVFLHPKTG----- 165
+YLVGG VRD +L + D D V+ AD + L +A +G+ FP+ H G
Sbjct: 21 AYLVGGCVRDLILNRVPKDYD-VITTADLKQIRRLFHRAQVIGKRFPI-CHVWMGGSIIE 78
Query: 166 ---------EEFALARTERKNGHG--------------YRGFIVNADPTVTLEQDLQRRD 276
+ L +++ K+G Y G+ + ++ +RD
Sbjct: 79 VSSFDTVAHSDSDLEKSKEKSGVSLDTKANKNNSLFKMYSGWDIK---DCKRWRNSLQRD 135
Query: 277 FTINAIAHDQTNDTLIDPYGGVNDLEQ---RILRHISPAFAEDPLRVLRAARFMARLAPL 447
FTIN++ ++ + T+ D G+ DL ++L +S F+ + R+LR R AR L
Sbjct: 136 FTINSLFYNPFDFTIYDYANGMEDLTDLKFKVLTILS-WFSPNTARILRGLRIAAR---L 191
Query: 448 GFSIAPETLTMMRE 489
G S++ + T + E
Sbjct: 192 GLSLSKDVKTAIPE 205
>gi|535707 (L27092) B-cell receptor [Pneumocystis carinii]
Length = 1030
Score = 33.6 bits (75), Expect = 3.4
Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 1/83 (1%)
Frame = +1
Query: 751 GFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQQLSERLKVPRDYQQLALIACREHLNV 930
G C DLGK TWP H + +Q T ++ +++ LN
Sbjct: 543 GIREKCQDLGKGFQKEITWPCHTLEQQCNRLGTTEILKQVL----------------LNE 586
Query: 931 HR-LSKLHDHTVYELLQRCDAFRR 999
H+ K H++ V L ++C+ + R
Sbjct: 587 HKDTLKTHENCVTYLKEKCNKWSR 610
>gi|546434|bbs|145773 (S69351) BRN-3b=class V POU transcription
factor [mice, CD/CD embryo fibroblast cells, Peptide,
322 aa] [Mus sp.]
Length = 322
Score = 32.5 bits (72), Expect = 7.6
Identities = 25/87 (28%), Positives = 42/87 (47%), Gaps = 10/87 (11%)
Frame = +1
Query: 568 QPAAFLHTLRTV------NALEVVLPELNALYGVPQHADYHPEIDTGLHQELVSDMAAKL 729
+P A HT+ T+ ++ V + +AL G H +H HQ L ++ L
Sbjct: 50 KPDATYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHHHHHQPHQALEGELLEHL 109
Query: 730 APGDMLIGFAALCHDLGKALTPRATWPH----HPMHE 828
+PG + A+ G ++ A PH +PMH+
Sbjct: 110 SPG---LALGAMAGPDGTVVSTPAHAPHMATMNPMHQ 143
>gi|2495301|sp|Q63934|BR3B_MOUSE BRAIN-SPECIFIC HOMEOBOX/POU DOMAIN
PROTEIN 3B (BRN-3B) (BRN-3.2) >gi|2143434|pir||I58156
Brn-3.2 - mouse >gi|545069|bbs|142764 (S68377)
Brn-3.2=Brn-3-related POU transcription factor [mice,
teratocarcinoma cell line F9, Peptide, 411 aa] [Mus sp.]
Length = 411
Score = 32.5 bits (72), Expect = 7.6
Identities = 25/87 (28%), Positives = 42/87 (47%), Gaps = 10/87 (11%)
Frame = +1
Query: 568 QPAAFLHTLRTV------NALEVVLPELNALYGVPQHADYHPEIDTGLHQELVSDMAAKL 729
+P A HT+ T+ ++ V + +AL G H +H HQ L ++ L
Sbjct: 139 KPDATYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHHHHHQPHQALEGELLEHL 198
Query: 730 APGDMLIGFAALCHDLGKALTPRATWPH----HPMHE 828
+PG + A+ G ++ A PH +PMH+
Sbjct: 199 SPG---LALGAMAGPDGTVVSTPAHAPHMATMNPMHQ 232
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322184521
Number of Sequences: 443958
Number of extensions: 7215336
Number of successful extensions: 20938
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 20808
Number of HSP's gapped (non-prelim): 61
length of query: 417
length of database: 136,619,797
effective HSP length: 55
effective length of query: 361
effective length of database: 112,202,107
effective search space: 40504960627
effective search space used: 40504960627
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)