BLASTX 2.0.10 [Aug-26-1999]
Query= XF-06H03-GL28
(4911 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1706913|sp|P55127|FRPC_NEIME IRON-REGULATED PROTEIN FRPC >gi... 348 2e-94
gi|4103168|gb|AAD01698.1| (AF021919) RTX protein [Actinobacillu... 274 5e-72
gi|1706912|sp|P55126|FRPA_NEIME IRON-REGULATED PROTEIN FRPA >gi... 273 1e-71
gi|4103982|gb|AAD01905.1| (AF030511) ApxIVA var3 [Actinobacillu... 240 1e-61
gi|2961326|emb|CAA04800.1| (AJ001518) bacteriocin [Rhizobium le... 148 5e-34
gi|117789|sp|P15318|CYAA_BORPE BIFUNCTIONAL HEMOLYSIN-ADENYLATE... 145 2e-33
gi|6648078|sp|Q57506|CYAA_BORBR BIFUNCTIONAL HEMOLYSIN-ADENYLAT... 139 2e-31
gi|1073227|pir||S51672 adenylate cyclase hemolysin - Bordetella... 139 2e-31
gi|3128317 (AF010496) potential outer membrane secretion protei... 109 2e-22
gi|4104348|gb|AAD02003.1| (AF035192) S-layer-RTX protein [Campy... 103 1e-20
gi|4104351|gb|AAD02005.1| (AF035193) S-layer-RTX protein [Campy... 95 4e-18
gi|39732|emb|CAA32411| (X14199) cyaA [Bordetella pertussis] 92 5e-17
gi|790694 (L39096) mannuronan C-5-epimerase [Azotobacter vinela... 85 5e-15
gi|4689002|emb|CAB41457.1| (Y08703) calcium binding protein [Si... 79 3e-13
gi|1890590|emb|CAB01938| (Z79692) ExpE1 [Sinorhizobium meliloti] 79 4e-13
gi|790693 (L39096) mannuronan C-5-epimerase [Azotobacter vinela... 79 4e-13
gi|2120758|pir||I39739 mannuronan C5 epimerase - Azotobacter vi... 78 6e-13
gi|123196|sp|P15377|RT2A_ACTPL RTX-II TOXIN DETERMINANT A (APX-... 75 5e-12
gi|232261|sp|Q00951|HLYA_ACTSU HEMOLYSIN (CYTOLYSIN II) (CLY-II... 75 5e-12
gi|285302|pir||A43834 toxin II - Actinobacillus suis 75 5e-12
gi|540077 (U13767) HlyA [Anabaena sp.] 74 1e-11
gi|123187|sp|P09983|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL >gi|69558... 73 2e-11
gi|6671152|gb|AAF23114.1| (AF188869) ApxIVA [Actinobacillus ple... 73 2e-11
gi|6671150|gb|AAF23113.1| (AF188868) ApxIVA [Actinobacillus ple... 73 2e-11
gi|1652114|dbj|BAA17039| (D90902) iron-regulated protein [Synec... 73 3e-11
gi|6671132|gb|AAF23104.1| (AF188859) ApxIVA [Actinobacillus ple... 72 4e-11
gi|1710793|sp|P55128|RT11_ACTPL RTX-I TOXIN DETERMINANT A FROM ... 71 6e-11
gi|1710794|sp|P55129|RT12_ACTPL RTX-I TOXIN DETERMINANT A FROM ... 71 6e-11
gi|1477457 (U04954) RTX-1 toxin determinant [Actinobacillus ple... 71 6e-11
gi|2144674|pir||I39643 toxin I - Actinobacillus pleuropneumonia... 71 6e-11
gi|3128319 (AF010496) hypothetical protein [Rhodobacter capsula... 71 8e-11
gi|95925|pir||S10056 hemolysin A - Escherichia coli plasmid pHl... 71 8e-11
gi|123197|sp|P08715|HLYA_ECOLI HEMOLYSIN, PLASMID >gi|150682|gb... 71 8e-11
gi|6671128|gb|AAF23102.1| (AF188857) ApxIVA [Actinobacillus ple... 70 2e-10
gi|790692 (L39096) mannuronan C-5-epimerase [Azotobacter vinela... 69 2e-10
gi|2735684 (AF002131) oscillin [Phormidium uncinatum] 69 3e-10
gi|3253294 (AF043471) hemolysin [Escherichia coli] 69 4e-10
gi|126356|sp|P16535|LKA1_PASHA LEUKOTOXIN FROM SEROTYPE A1 >gi|... 69 4e-10
gi|150513 (M24197) leukotoxin membrane protein (LktA) [Pasteure... 69 4e-10
gi|97194|pir||B30169 leukotoxin A - Pasteurella haemolytica (se... 69 4e-10
gi|79293|pir||A37205 leukotoxin A - Actinobacillus actinomycete... 68 5e-10
gi|525329 (U12572) HlyA [Escherichia coli] 68 7e-10
gi|126355|sp|P16462|LKTA_ACTAC LEUKOTOXIN >gi|141834 (M27399) l... 68 7e-10
gi|3337015|dbj|BAA31774.1| (AB011549) Hemolysin A [Escherichia ... 68 7e-10
gi|4455065|gb|AAD21057| (AF119150) RtxA protein [Vibrio cholerae] 67 1e-09
gi|1708214|sp|P55117|LKAA_PASHA LEUKOTOXIN FROM SEROTYPE T10 >g... 66 2e-09
gi|6009631|dbj|BAA84997.1| (AB025596) lipase [Pseudomonas sp. M... 66 3e-09
gi|1524027|emb|CAA63849| (X94129) EHEC-hemolysin [Escherichia c... 66 4e-09
gi|1805762|emb|CAA60042| (X86087) EHEC-hlyA [Escherichia coli] 66 4e-09
gi|2118619|pir||I41078 hemolysin - Escherichia coli >gi|4388764... 66 4e-09
gi|1708215|sp|P55118|LKAB_PASHA LEUKOTOXIN FROM SEROTYPE A11 >g... 66 4e-09
gi|311825|emb|CAA80501| (Z22887) leukotoxin A [Pasteurella haem... 65 5e-09
gi|311829|emb|CAA80498| (Z22884) leukotoxin A [Pasteurella haem... 65 5e-09
gi|1708213|sp|P55116|LKA3_PASHA LEUKOTOXIN FROM SEROTYPE T3 >gi... 65 5e-09
gi|421309|pir||S34238 leukotoxin A - Pasteurella haemolytica (f... 65 5e-09
gi|3873281 (AF099800) mannuronan C-5-epimerase AlgE7 [Azotobact... 64 1e-08
gi|1653855|dbj|BAA18765| (D90917) leukotoxin (LtA) [Synechocyst... 62 3e-08
gi|1710800|sp|P55130|RT31_ACTPL RTX-III TOXIN DETERMINANT A FRO... 60 2e-07
gi|1710801|sp|P55131|RT32_ACTPL RTX-III TOXIN DETERMINANT A FRO... 59 5e-07
gi|311827|emb|CAA80500| (Z22886) leukotoxin A [Pasteurella haem... 58 8e-07
gi|6531347|gb|AAF15370.1|U66588_2 (U66588) PaxA [Pasteurella ae... 56 2e-06
gi|131060|sp|P16316|PRTB_ERWCH SECRETED PROTEASE B PRECURSOR (P... 55 5e-06
gi|280131|pir||JS0763 triacylglycerol lipase (EC 3.1.1.3) - Ser... 55 5e-06
gi|131066|sp|P16317|PRTC_ERWCH SECRETED PROTEASE C PRECURSOR (P... 55 5e-06
gi|1708221|sp|P55123|LKTA_PASSP LEUKOTOXIN >gi|457618 (L12148) ... 55 5e-06
gi|541037|pir||JN0891 metalloproteinase (EC 3.4.24.-) A - Erwin... 53 2e-05
gi|4467352|emb|CAB37652| (X80056) apxIIIBD [Actinobacillus pleu... 53 3e-05
gi|541038|pir||JN0892 metalloproteinase (EC 3.4.24.-) B - Erwin... 52 3e-05
gi|508744 (U11258) extracellular lipase [Serratia marcescens] 52 4e-05
gi|1465739 (U48223) cell-surface-associated polypeptide [Synech... 52 4e-05
gi|100210|pir||S25299 extensin precursor (clone Tom L-4) - toma... 50 1e-04
gi|4558791|gb|AAD22743.1| (AF069748) polyurethanase esterase A ... 50 2e-04
gi|3873279 (AF099799) mannuronan C-5-epimerase AlgE6 [Azotobact... 49 3e-04
gi|4468710|emb|CAB38101.1| (AJ225896) endo-1,3-1,4-beta glycana... 49 4e-04
gi|730410|sp|Q07295|PRTA_ERWCH SECRETED PROTEASE A PRECURSOR (P... 47 0.002
gi|3135220|dbj|BAA28268| (AB013895) metalloprotease [Pseudomona... 46 0.002
gi|3493595|gb|AAC33448.1| (AF064762) ZapE [Proteus mirabilis] 46 0.002
gi|1652953|dbj|BAA17871| (D90909) hemolysin [Synechocystis sp.] 46 0.003
gi|829594 (U25950) pro [Proteus mirabilis] 45 0.004
gi|1731424|sp|Q11137|ZAPA_PROMI EXTRACELLULAR METALLOPROTEASE P... 45 0.004
gi|3493596|gb|AAC33449.1| (AF064762) ZapA [Proteus mirabilis] 45 0.004
gi|131089|sp|P19144|PRTX_ERWCH SECRETED PROTEASE C PRECURSOR (P... 45 0.008
gi|5733435|gb|AAD49575.1|AF141295_1 (AF141295) metalloprotease ... 45 0.008
gi|151340 (M74125) lipase [Pseudomonas sp.] 44 0.010
gi|2114317|dbj|BAA20035| (D88685) tegument protein [Equine herp... 44 0.010
gi|6013395|gb|AAF01331.1| (AF188366) polyurethanase esterase B ... 44 0.010
gi|283045|pir||S28264 hydroxyproline-rich glycoprotein - maize ... 44 0.013
gi|4063015 (AF083061) protease PrtA [Pseudomonas fluorescens] 43 0.029
gi|1170792|sp|P41773|LIPB_PSEFL LIPASE PRECURSOR (TRIACYLGLYCER... 43 0.029
gi|790691 (L39096) mannuronan C-5-epimerase [Azotobacter vinela... 43 0.029
gi|4115623|dbj|BAA36461.1| (AB015053) alkaline protease [Pseudo... 43 0.029
gi|82698|pir||JQ0985 hydroxyproline-rich glycoprotein precursor... 42 0.038
gi|2983562 (AE000722) hemolysin [Aquifex aeolicus] 42 0.050
gi|416833|sp|Q02910|CPN_DROME CALPHOTIN >gi|422433|pir||A47282 ... 42 0.050
gi|283032|pir||S22456 hydroxyproline-rich glycoprotein - perenn... 42 0.050
gi|1492050 (U60315) MC107L [Molluscum contagiosum virus subtype 1] 42 0.050
gi|6119851|gb|AAF04257.1| (AF139114) subtilisin-like serine pro... 41 0.066
gi|4826998|ref|NP_005057.1|| splicing factor proline/glutamine ... 41 0.066
gi|5305316|gb|AAD41583.1|AF057703_1 (AF057703) structural toxin... 41 0.066
gi|100753|pir||S13383 hydroxyproline-rich glycoprotein - sorghu... 41 0.066
gi|4826415|emb|CAB42873.1| (Y19002) zinc-binding metalloproteas... 41 0.066
gi|4115630|dbj|BAA36468.1| (AB015053) extracellular lipase [Pse... 41 0.086
gi|2429362 (AF020261) proline rich protein [Santalum album] 41 0.086
gi|4507313|ref|NP_003160.1|| suppressor of Ty (S.cerevisiae) 5 ... 41 0.086
gi|2065177|emb|CAA73326| (Y12790) Supt5h protein [Homo sapiens]... 41 0.086
gi|2723380|dbj|BAA24075.1| (AB000516) DSIF p160 [Homo sapiens] 41 0.086
gi|4884836|gb|AAD31829.1| (AF131877) NapG oxidoreductase [Strep... 41 0.086
gi|2498942|sp|Q62203|SP62_MOUSE SPLICEOSOME ASSOCIATED PROTEIN ... 41 0.086
gi|2754752 (U88539) chromatin structural protein homolog Supt5h... 41 0.086
gi|4191720 (AF083061) thermostable lipase TliA [Pseudomonas flu... 41 0.11
gi|140154|sp|P21485|YA32_PSEAE HYPOTHETICAL 13.0 KD PROTEIN IN ... 41 0.11
gi|150987 (M32077) alginate regulatory protein P [Pseudomonas a... 41 0.11
gi|4757846|ref|NP_004317.1|| B-cell CLL/lymphoma 9 >gi|2570024|... 41 0.11
gi|4584086|emb|CAB40552.1| (AJ132828) p210 protein [Spermatozop... 41 0.11
gi|6007542|gb|AAF00951.1|AF183139_1 (AF183139) trucnated type 2... 41 0.11
gi|2078483 (U43200) antifreeze glycopeptide AFGP polyprotein pr... 41 0.11
gi|1333636 (L47321) glycoprotein 150 [Murine herpesvirus 68] >g... 40 0.15
gi|126743|sp|P27816|MAP4_HUMAN MICROTUBULE-ASSOCIATED PROTEIN 4... 40 0.15
gi|4505099|ref|NP_002366.1|| microtubule-associated protein 4 >... 40 0.15
gi|322759|pir||PQ0479 pistil extensin-like protein (clone pMG14... 40 0.15
gi|539639|pir||A53253 microtubule-associated protein 4 - human ... 40 0.15
gi|1706520|sp|P54258|DRPL_RAT ATROPHIN-1 (DENTATORUBRAL-PALLIDO... 40 0.15
gi|482295|pir||A36128 regulatory protein algP - Pseudomonas aer... 40 0.19
gi|81286|pir||S22697 extensin - Volvox carteri (fragment) >gi|2... 40 0.19
gi|995557|emb|CAA61623| (X89453) DRPLA [Rattus norvegicus] 40 0.19
gi|1002380 (U24189) RRM-type RNA binding protein [Caenorhabditi... 39 0.25
gi|730411|sp|Q07162|PRTG_ERWCH SECRETED PROTEASE G PRECURSOR (P... 39 0.25
gi|2274845|dbj|BAA21534| (D88461) N-WASP [Rattus rattus] 39 0.25
gi|100215|pir||S14970 extensin class I (clone w17-1) - tomato >... 39 0.25
gi|3811372 (AF099925) No definition line found [Caenorhabditis ... 39 0.33
gi|4680231|gb|AAD27584.1|AF118275_1 (AF118275) atrophin-related... 39 0.33
gi|3413878|dbj|BAA32303| (AB007927) KIAA0458 protein [Homo sapi... 39 0.33
gi|3372354 (AF041104) atrophin-1 like protein [Homo sapiens] 39 0.33
gi|3411015 (AF016005) atrophin-1 related protein [Homo sapiens] 39 0.33
gi|6688241|emb|CAB65124.1| (AJ007421) spalt-like zinc finger pr... 39 0.33
gi|3811371 (AF099925) contains similarity to EF-hand calcium-bi... 39 0.33
gi|544262|sp|Q03211|EXLP_TOBAC PISTIL-SPECIFIC EXTENSIN-LIKE PR... 39 0.44
gi|728867|sp|P40602|APG_ARATH ANTER-SPECIFIC PROLINE-RICH PROTE... 39 0.44
gi|999638|pdb|1SRP| Serratia Protease (E.C.3.4.24.40) (Serraly... 39 0.44
gi|4092666 (AF083132) putative 13.1 kDa E3 protein [Porcine ade... 38 0.57
gi|2281443 (U89164) endo-1,3-1,4-beta-glycanase homolog [Sinorh... 38 0.57
gi|1652714|dbj|BAA17634| (D90907) hypothetical protein [Synecho... 38 0.57
gi|94816|pir||A35630 regulatory protein algR3 - Pseudomonas aer... 38 0.57
gi|602878|emb|CAA58234| (X83232) flagellin [Legionella pneumoph... 38 0.75
gi|77658|pir||JQ0148 hypothetical 34.4K protein - Pseudomonas a... 38 0.75
gi|6320628|ref|NP_010708.1|HKR1| Type 1 membrane protein with E... 38 0.75
gi|113633|sp|P15276|ALGP_PSEAE TRANSCRIPTIONAL REGULATORY PROTE... 38 0.75
gi|2564958 (AF030001) tenascin X [Mus musculus] 38 0.98
gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans] 38 0.98
gi|2950243|emb|CAB10894| (Z98204) extensin [Hordeum vulgare] 38 0.98
gi|6459930|gb|AAF11681.1|AE002048_1 (AE002048) conserved hypoth... 38 0.98
gi|2804289|dbj|BAA24436| (AB010266) tenascin-X [Mus musculus] 38 0.98
gi|2642493 (AF023910) DNA topoisomerase I [Physarum polycephalum] 37 1.3
gi|5420389|emb|CAB46680.1| (AJ243460) proteophosphoglycan [Leis... 37 1.3
gi|1170299|sp|P41809|HKR1_YEAST HANSENULA MRAKII KILLER TOXIN-R... 37 1.3
gi|5123653|emb|CAB45342.1| (AL079345) putative membrane protein... 37 1.3
gi|2981221 (AF053091) eyelid [Drosophila melanogaster] 37 1.3
gi|1944583|emb|CAB08095| (Z94121) hypothetical protein Rv3906c ... 37 1.3
gi|1213537 (U50193) coded for by C. elegans cDNA cm02b2; alter... 37 1.7
gi|79833|pir||JQ0405 hypothetical 119.5K protein (uvrA region) ... 37 1.7
gi|1213538 (U50193) coded for by C. elegans cDNA yk6a12.3; code... 37 1.7
gi|77605|pir||A41463 alkaline metalloproteinase (EC 3.4.24.-) p... 36 2.2
gi|1616941|dbj|BAA13503| (D87921) alkaline proteinase [Pseudomo... 36 2.2
gi|1296845|emb|CAA66196| (X97581) spalt protein [Mus musculus] 36 2.2
gi|6322209|ref|NP_012284.1|MUC1| cell surface flocculin with st... 36 2.2
gi|5917666|gb|AAD55980.1|AF159297_1 (AF159297) extensin-like pr... 36 2.2
gi|1421342|pdb|1AKL| Alkaline Protease From Pseudomonas Aerugi... 36 2.2
gi|416632|sp|Q03023|APRA_PSEAE ALKALINE METALLOPROTEINASE PRECU... 36 2.2
gi|485464|pir||S29309 hypothetical protein 4 (phaC2 3' region) ... 36 2.9
gi|6580770|gb|AAF18276.1| (AF088897) pyruvate formate lyase act... 36 2.9
gi|5823131|gb|AAD53049.1|AF127245_1 (AF127245) Smcx [Mus musculus] 36 2.9
gi|731160|sp|P41228|X169_CRIGR XE169 PROTEIN >gi|2137060|pir||I... 36 2.9
gi|6681229|ref|NP_031907.1|| dentatorubral pallidoluysian atrop... 36 2.9
gi|2289904 (AC002397) DRPLA [Mus musculus] 36 2.9
gi|6682831|dbj|BAA88899.1| (AB020964) complement component C7 [... 36 3.8
gi|3800851 (AF081671) VU91D calmodulin [synthetic construct] 36 3.8
gi|549135|sp|P35448|TSP1_XENLA THROMBOSPONDIN 1 PRECURSOR 36 3.8
gi|1722853|sp||X169_MOUSE_2 [Segment 2 of 2] XE169 PROTEIN (SMC... 36 3.8
gi|1869859|emb|CAB06722.1| (Z86099) very large tegument protein... 36 3.8
gi|3559957|emb|CAA20595.1| (AL031514) putative ATP/GTP binding ... 35 5.0
gi|100935|pir||S21825 vicilin-like storage protein Glb1-S, embr... 35 5.0
gi|4885111|ref|NP_005176.1|| calmodulin-like 3 >gi|115502|sp|P2... 35 5.0
gi|4262551|gb|AAD14686| (AF116268) G-protein XLAS [Mus musculus] 35 5.0
gi|3023166|gb|AAC12650.1| (AF055579) glycosidase OleR [Streptom... 35 5.0
gi|128484|sp|P15728|NODO_RHILV NODULATION PROTEIN O >gi|95235|p... 35 6.5
gi|3386544|gb|AAC28389| (AF079528) IER5 [Mus musculus] >gi|3411... 35 6.5
gi|4507349|ref|NP_003176.1|| TATA box binding protein (TBP)-ass... 35 6.5
gi|552806 (M36911) cytochrome c oxidase subunit I [Podospora an... 34 8.5
gi|394780|emb|CAA50739| (X71923) tenascin-X precursor [Homo sap... 34 8.5
gi|539698|pir||A40701 tenascin-X precursor - human 34 8.5
gi|1841546|gb|AAB47488.1|AAB47488 (U89337) tenascin X [Homo sap... 34 8.5
gi|1084362|pir||S53504 extensin-like protein S3 - alfalfa >gi|5... 34 8.5
gi|3873283 (AF099801) mannuronan C-5-epimerase-related protein ... 34 8.5
gi|3800845 (AF081668) VU91A calmodulin [synthetic construct] 34 8.5
>gi|1706913|sp|P55127|FRPC_NEIME IRON-REGULATED PROTEIN FRPC
>gi|420920|pir||S35027 cytotoxin RTX homolog frpC -
Neisseria meningitidis >gi|293963 (L06299) iron-regulated
protein [Neisseria meningitidis]
Length = 1829
Score = 348 bits (884), Expect = 2e-94
Identities = 319/1153 (27%), Positives = 509/1153 (43%), Gaps = 121/1153 (10%)
Frame = +1
Query: 1357 DPLVLDLDGDGIETVAAG--KNILFDHDGDGITHASGWVKSDDGLLVLDRNGNGRIDNGS 1530
DPL LDLDGDGIETVA LFDH+ DGI A+GWV +DDGLLV D NGNG IDNG+
Sbjct: 414 DPLALDLDGDGIETVATKGFSGSLFDHNRDGIRTATGWVAADDGLLVRDLNGNGIIDNGA 473
Query: 1531 ELFGADTVLANGHKATSGFEALRDLDSNGDGLFNAADARFTDVRVWRDLNQDGHSQANEL 1710
ELFG +T LA+G A G+ AL +LDSNGD + NAADA F +RVW+DLNQDG SQANEL
Sbjct: 474 ELFGDNTKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGISQANEL 533
Query: 1711 FTLSNLGIASITLTPTDTQRVNLGNGNVMDARGSYTRTDGRSGTVGNLQLGVDQFYRDYR 1890
TL LGI S+ L D + NLGNGN + +GSYT+TDG + +G+L L D + ++
Sbjct: 534 RTLEELGIQSLDLAYKDVNK-NLGNGNTLAQQGSYTKTDGTTAKMGDLLLAADNLHSRFK 592
Query: 1891 GAHDTVTISEAARALPAISGSGAVRDXXXXXXXXXXXXXXXXXXXXGTTQGTLRAALDQV 2070
D V ++ ++G G +RD T+ A LD +
Sbjct: 593 ---DKVELTAEQAKAANLAGIGRLRDLREAAALSGDLANMLKAYSAAETKEAQLALLDNL 649
Query: 2071 IALWASTSTMRXXXXXXXXXXXXHRTVYYHGLVVPGSVASQGEAAVLPWIKEQHARLGPI 2250
I WA T + +T + P VA + A++ + A +
Sbjct: 650 IHKWAETDSNWGKKSPMRLSTDWTQTANEGIALTPSQVAQLKKNALVSLSDKAKAAIDAA 709
Query: 2251 ---IGILEKFNGSRMVSEQNGQISMVGRTFAWQRVVRPDGHSEEAMYLALPPRQLSATFD 2421
I +L+ + G + + + + E+A+ + + T D
Sbjct: 710 RDRIAVLDAYTG-----QDSSTLYYMS--------------EEDALNI------VKVTND 744
Query: 2422 AFAEAYAKLKESIYIRLVLEPRLTDYLSGLRLTDNNGVMAWDASGLEAKLDQTWQHNKAQ 2601
Y L ++IY L+ + RL YL+ + N D SGL + + N +
Sbjct: 745 ----TYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDTFTLDFSGLVQAFNHVKETNPQK 800
Query: 2602 ALQDVMDLYRYGSNAVAASGWKPFDALRHMIDRTAATPDGRQALAAAEITLVSGNAEXXX 2781
A D+ ++ YG G + + D ++ L + L++
Sbjct: 801 AFVDLAEMLAYGELRSWYEGRRLMADYVEEAKKAGKFEDYQKVLGQETVALLA------K 854
Query: 2782 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEGGAXXXXXXXXXXXXXXXXXXXSNRLE 2961
TL GGA ++ LE
Sbjct: 855 TSGTQADDILQNVGFGHNKNVSLYGNDGNDTLIGGA------------------GNDYLE 896
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE----QGGTDK 3129
GG+G+D TY+F +G G DT+ G D
Sbjct: 897 GGSGSD-----------------------------TYVFGKGFGQDTVYNYDYATGRKDI 927
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTL 3309
+ F +GI A + REG +++ + + ++ + ++G+ + I++I F +G +
Sbjct: 928 IRFTDGITADMLTFTREGNHLLIKAKDDSGQVTVQSYFQNDGSGAYR--IDEIHFDNGKV 985
Query: 3310 WTPEXXXXXXXXXXXXP----------------GNDTLKGWQGKDIXXXXXXXXXXXXXX 3441
G+D L G G D+
Sbjct: 986 LDVATVKELVQQSTDGSDRLYAYQSGNTLNGGLGDDYLYGADGDDLLNGDAGNDSIYSGN 1045
Query: 3442 XSNRLEGGAGDDVL----------------KVSYWSADNVLSGGTGDDTLYGSAFADTYL 3573
++ L GG G+D L ++ ++ L GG G+D L G + +DTY+
Sbjct: 1046 GNDTLNGGEGNDALYGYNGNDALNGGEGNDHLNGEDGNDTLIGGAGNDYLEGGSGSDTYV 1105
Query: 3574 FNQGDGHDTIIE----QGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWL 3741
F +G G DT+ G D + F +GI A + REG +++ +G + ++ +
Sbjct: 1106 FGKGFGQDTVYNYDYATGRKDIIRFTDGITADMLTFTREGNHLLIKAKDGSGQVTVQSYF 1165
Query: 3742 TSNGTRNHSADIEQIVFADGTLWTPEX----------------XXXXXXXXXXXXXNDTL 3873
++G+ + I++I F +G + +D L
Sbjct: 1166 QNDGSGAYR--IDEIHFDNGKVLDVATVKELVQQSTDGSDRLYAYQSGNTLNGGLGDDYL 1223
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL----------------KVSYWSAD 4005
G G D+ ++ L+GG G+D L ++ +
Sbjct: 1224 YGADGDDLLNGDAGNDSIYSGNGNDTLDGGEGNDALYGYNGNDALNGGEGNDHLNGEDGN 1283
Query: 4006 NVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIE----QGGTDKLVFGEGILAADVRLLR 4173
+ LIGG G+D L G + +DTY+F KG G DT+ G D + F +GI A + R
Sbjct: 1284 DTLIGGAGNDYLEGGSGSDTYVFGKGFGQDTVYNYDYATGRKDIIRFTDGITADMLTFTR 1343
Query: 4174 EGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEX----------- 4320
EG +++ + + ++ + ++G+ + I++I F +G +
Sbjct: 1344 EGNHLLIKAKDDSGQVTVQSYFQNDGSGAYR--IDEIHFDNGKVLDVATVKELVQQSTDG 1401
Query: 4321 -----XXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVL-- 4479
G+D L G ++ L+GG G+D L
Sbjct: 1402 SDRLYAYQSGSTLNGGLGDDYLYGADGDDLLNGDAGNDSIYSGNGNDTLDGGEGNDALYG 1461
Query: 4480 --------------KVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIE---- 4605
++ ++ L GG G+D L G + +DTY+F KG G DT+
Sbjct: 1462 YNGNDALNGGEGNDHLNGEDGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQDTVYNYDYA 1521
Query: 4606 QGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSG---HQVESLVFQ 4776
G D + F G++ FTR G+ L + QVTV +F G ++++ + F
Sbjct: 1522 TGRKDIIRFTDGITADMLTFTREGNHLLIKAKDGSGQVTVQSYFQNDGSGAYRIDEIHFD 1581
Query: 4777 DGTVLS-AEVERLI 4815
+G VL A V++L+
Sbjct: 1582 NGKVLDVATVKKLV 1595
Score = 186 bits (467), Expect = 2e-45
Identities = 170/625 (27%), Positives = 298/625 (47%), Gaps = 115/625 (18%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE----Q 3114
++ L GG GND L ++ LIGG G+D L G + +DTY+F +G G DT+
Sbjct: 1065 NDALNGGEGNDHLNGE--DGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQDTVYNYDYAT 1122
Query: 3115 GGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVF 3294
G D + F +GI A + REG +++ +G + ++ + ++G+ + I++I F
Sbjct: 1123 GRKDIIRFTDGITADMLTFTREGNHLLIKAKDGSGQVTVQSYFQNDGSGAYR--IDEIHF 1180
Query: 3295 ADGTLWTPEXXXXXXXXXXXXP----------------GNDTLKGWQGKDIXXXXXXXXX 3426
+G + G+D L G G D+
Sbjct: 1181 DNGKVLDVATVKELVQQSTDGSDRLYAYQSGNTLNGGLGDDYLYGADGDDLLNGDAGNDS 1240
Query: 3427 XXXXXXSNRLEGGAGDDVL----------------KVSYWSADNVLSGGTGDDTLYGSAF 3558
++ L+GG G+D L ++ ++ L GG G+D L G +
Sbjct: 1241 IYSGNGNDTLDGGEGNDALYGYNGNDALNGGEGNDHLNGEDGNDTLIGGAGNDYLEGGSG 1300
Query: 3559 ADTYLFNQGDGHDTIIE----QGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIR 3726
+DTY+F +G G DT+ G D + F +GI A + REG +++ + +
Sbjct: 1301 SDTYVFGKGFGQDTVYNYDYATGRKDIIRFTDGITADMLTFTREGNHLLIKAKDDSGQVT 1360
Query: 3727 LKDWLTSNGTRNHSADIEQIVFADGTLWTPEX----------------XXXXXXXXXXXX 3858
++ + ++G+ + I++I F +G +
Sbjct: 1361 VQSYFQNDGSGAYR--IDEIHFDNGKVLDVATVKELVQQSTDGSDRLYAYQSGSTLNGGL 1418
Query: 3859 XNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL----------------KVS 3990
+D L G G D+ ++ L+GG G+D L ++
Sbjct: 1419 GDDYLYGADGDDLLNGDAGNDSIYSGNGNDTLDGGEGNDALYGYNGNDALNGGEGNDHLN 1478
Query: 3991 YWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIE----QGGTDKLVFGEGILAAD 4158
++ LIGG G+D L G + +DTY+F KG G DT+ G D + F +GI A
Sbjct: 1479 GEDGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQDTVYNYDYATGRKDIIRFTDGITADM 1538
Query: 4159 VRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXX 4338
+ REG +++ +G + ++ + ++G+ + I++I F +G + +
Sbjct: 1539 LTFTREGNHLLIKAKDGSGQVTVQSYFQNDGSGAYR--IDEIHFDNGKVL--DVATVKKL 1594
Query: 4339 XXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSG 4518
G+D L +Q + L G AG+D + + ++ L+G
Sbjct: 1595 VQQSTDGSDRLYAYQSGNTLNGGLGDDYLYGADGDDLLNGDAGND--SIYSGNGNDTLNG 1652
Query: 4519 GTGDDTLY------------------------------------GSAFADTYLFNKGDGH 4590
G G+D LY G + +DTY+F KG G
Sbjct: 1653 GEGNDALYGYNGNDVLNGGEGNDHLNGEDGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQ 1712
Query: 4591 DTIIE---QGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVE 4761
DT+ +D + F G + F RSG DL +L +D V ++G+F G H+V+
Sbjct: 1713 DTVYNYHVDKNSDTMHF-KGFKAADVHFIRSGSDL-VLSASEQDNVRISGFFYGENHRVD 1770
Query: 4762 SLVFQDGTVLSAEVERLIAA 4821
+ VF D + + + + I A
Sbjct: 1771 TFVFDDAAISNPDFAKYINA 1790
>gi|4103168|gb|AAD01698.1| (AF021919) RTX protein [Actinobacillus
pleuropneumoniae]
Length = 1805
Score = 274 bits (693), Expect = 5e-72
Identities = 287/1175 (24%), Positives = 474/1175 (39%), Gaps = 32/1175 (2%)
Frame = +1
Query: 1279 NQTLHTDNASLLDLLHDLFRNSRDERDPLVLDLDGDGIETVAAG--KNILFDHDGDGITH 1452
N + DN S ++ ++ RN D DPL LDLDGDG+ETV+ + LFDH+G GI
Sbjct: 613 NNGSNQDNHSDVNAPNNPGRNY-DIYDPLALDLDGDGLETVSMNGRQGALFDHEGKGIRT 671
Query: 1453 ASGWVKSDDGLLVLDRNGNGRIDNGSELFGADTVLANGHKATSGFEALRDLDSNGDGLFN 1632
A+GW+ +DDG LVLDRN +G I++ SELF L++G + GF L DLD+N D +
Sbjct: 672 ATGWLAADDGFLVLDRNQDGIINDISELFSNKNQLSDGSISAHGFATLADLDTNQDQRID 731
Query: 1633 AADARFTDVRVWRDLNQDGHSQANELFTLSNLGIASITLTPTDTQRVNLGNGNVMDARGS 1812
D F+ +++WRDLNQ+G S+ANELF+L +L I S+ T + + L N++ G
Sbjct: 732 QNDKLFSKLQIWRDLNQNGFSEANELFSLESLNIKSLH-TAYEERNDFLAGNNILAQLGK 790
Query: 1813 YTRTDGRSGTVGNLQLGVDQFYRDYRGAHDTVTISEAARALPAISGSGAVRDXXXXXXXX 1992
Y +TDG +G+L + FY + + + ++E R ++G+G VRD
Sbjct: 791 YEKTDGTFAQMGDLNFSFNPFYSRFT---EALNLTEQQRRTINLTGTGRVRDLREAAALS 847
Query: 1993 XXXXXXXXXXXXGTTQGTLRAALDQVIALWASTSTMRXXXXXXXXXXXXHRTVYYHGLVV 2172
+ R L ++ WA+T + +Y ++
Sbjct: 848 EELAALLQQYTKASDFQAQRELLPAILDKWAATDL---------------QYQHYDKTLL 892
Query: 2173 PGSVASQGEAAVLPWIKEQHARLGPIIGILEKFNGSRMVSEQNGQISMVGRTFAWQRVVR 2352
++ A+V ++ ++L I + + +I+ + +
Sbjct: 893 KTVESTDSSASV---VRVTPSQLSSIRNAKHDPTVMQNFEQSKAKIATLNSLY------- 942
Query: 2353 PDGHSEEAMYLALPPRQLSATFDAFAEAYAKLKESIYIRLVLEPRLTDYLSGLRLTDNNG 2532
G + + +Y + + D Y E Y L+L+ RL Y+ + G
Sbjct: 943 --GLNIDQLYYT-TDKDIRYITDKVNNMYQTTVELAYRSLLLQTRLKKYVYSVNAKQFEG 999
Query: 2533 VMAWDASGLEAKLDQTWQHNKAQALQDVMDLYRYGSNAVAASGWKP-FDALRHMIDRTAA 2709
D S EA + T++ + AL D+ + + ++ + WK L ID A
Sbjct: 1000 KWVTDYSRTEALFNSTFKQSPENALYDLSEYLSFFND---PTEWKEGLLLLSRYIDYAKA 1056
Query: 2710 TPDGRQALAAAEITLVSGNAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEGGA 2889
A + +T+ L+G
Sbjct: 1057 QGFYENWAATSNLTI-------------------------ARLREAGVIFAESTDLKGDE 1091
Query: 2890 XXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT 3069
+ L GG GND LK SY ADT
Sbjct: 1092 KNNILLGSQKDNNLSGSAGDDLLIGGEGNDTLKGSYG--------------------ADT 1131
Query: 3070 YLFNQGDGHDTIIEQGGTDK-------LVFGEGILAADVRLLREGQDVVLDLGNGHDSIR 3228
Y+F++G G D + E D L F + + A+V+ R D++L + DS+
Sbjct: 1132 YIFSKGHGQDIVYEDTNNDNRARDIDTLKFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVT 1190
Query: 3229 LKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXX 3408
+K + + + +++ FAD ++ T + GND +K D
Sbjct: 1191 VKSFYS-----HVDYQFDKLEFADRSI-TRDELIKAGLHLYGTDGNDDIKDHADWD---- 1240
Query: 3409 XXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGD 3588
++L GG G+D L G ADTY+F++G
Sbjct: 1241 ---------------------------------SILEGGKGNDILRGGYGADTYIFSKGH 1267
Query: 3589 GHDTIIEQGGTDK-------LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTS 3747
G D + E D L F + + A+V+ R D++L + DS+ +K +
Sbjct: 1268 GQDIVYEDTNNDNRARDIDTLKFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVTIKSFY-- 1324
Query: 3748 NGTRNH-SADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXX 3924
NH +++ FAD ++ T + +D + W +
Sbjct: 1325 ----NHVDYQFDKLEFADRSI-TRDELGKQGMALFGTDGDDNINDWGRNSV--------- 1370
Query: 3925 XXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTII 4104
++ GAG+D V+ + D+ LIGG G+D L G ADTY+F+KG G D +
Sbjct: 1371 ---------IDAGAGNDT--VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVY 1419
Query: 4105 EQGGTDK-------LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNH 4263
E D L F + + A+V+ R D++L + DS+ +K + + +
Sbjct: 1420 EDTNNDNRARDIDTLKFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVTVKSFYS-----HV 1473
Query: 4264 SADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXS 4443
+++ FAD ++ T + GND +K
Sbjct: 1474 DYQFDKLEFADRSI-TRDELIKAGLHLYGTDGNDDIK----------------------- 1509
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK 4623
+ D++L GG G+D L G ADTY+F+KG G D + E D
Sbjct: 1510 --------------DHADWDSILEGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDN 1555
Query: 4624 -------LVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDG 4782
L F ++ E +F R +DL L D VT+ ++N +Q + L F D
Sbjct: 1556 RARDIDTLKF-TDVNYAEVKFRRVDNDLMLFGYHDTDSVTIKSFYNHVDYQFDKLEFADR 1614
Query: 4783 TVLSAEV 4803
++ E+
Sbjct: 1615 SITRDEL 1621
Score = 174 bits (437), Expect = 5e-42
Identities = 170/624 (27%), Positives = 285/624 (45%), Gaps = 31/624 (4%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK-- 3129
L G GND +K + D++L GG G+D L G ADTY+F++G G D + E D
Sbjct: 1224 LYGTDGNDDIK-DHADWDSILEGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRA 1282
Query: 3130 -----LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNH-SADIEQIV 3291
L F + + A+V+ R D++L + DS+ +K + NH +++
Sbjct: 1283 RDIDTLKFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVTIKSFY------NHVDYQFDKLE 1335
Query: 3292 FADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAG 3471
FAD ++ T + G+D + W + ++ GAG
Sbjct: 1336 FADRSI-TRDELGKQGMALFGTDGDDNINDWGRNSV------------------IDAGAG 1376
Query: 3472 DDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK-------L 3630
+D V+ + D+ L GG G+D L G ADTY+F++G G D + E D L
Sbjct: 1377 NDT--VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRARDIDTL 1434
Query: 3631 VFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLW 3810
F + + A+V+ R D++L + DS+ +K + + + +++ FAD ++
Sbjct: 1435 KFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVTVKSFYS-----HVDYQFDKLEFADRSIT 1488
Query: 3811 TPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVS 3990
E L G G D D+ +
Sbjct: 1489 RDELIKAGLH----------LYGTDGND--------------------------DIKDHA 1512
Query: 3991 YWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK-------LVFGEGIL 4149
W D++L GG G+D L G ADTY+F+KG G D + E D L F + +
Sbjct: 1513 DW--DSILEGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRARDIDTLKFTD-VN 1569
Query: 4150 AADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNH-SADIEQIVFADGTLWTPEXXX 4326
A+V+ R D++L + DS+ +K + NH +++ FAD ++ T +
Sbjct: 1570 YAEVKFRRVDNDLMLFGYHDTDSVTIKSFY------NHVDYQFDKLEFADRSI-TRDELG 1622
Query: 4327 XXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 4506
G+D + W ++ ++ GAG+D V+ + D+
Sbjct: 1623 KQGMALFGTDGDDNINDW------------------GRNSVIDAGAGNDT--VNGGNGDD 1662
Query: 4507 VLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK-------LVFGAGLSRKEARF 4665
L GG G+D L G ADTY+F+KG G D + E D L F ++ E F
Sbjct: 1663 TLIGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRARDIDTLKF-TDINLSELWF 1721
Query: 4666 TRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESL-VFQDGTVLSAEVERLIAAMA 4827
+R +DL + SED+VTV W++ H++E++ + + T++S +VE+++ +MA
Sbjct: 1722 SRENNDLIIKSLLSEDKVTVQNWYSHQDHKIENIRLSNEQTLVSTQVEKMVESMA 1776
>gi|1706912|sp|P55126|FRPA_NEIME IRON-REGULATED PROTEIN FRPA
>gi|420919|pir||A47058 Fe-regulated RTX cytotoxin homolog
FrpA - Neisseria meningitidis >gi|150255 (L06302)
iron-regulated protein [Neisseria meningitidis]
Length = 1115
Score = 273 bits (690), Expect = 1e-71
Identities = 233/821 (28%), Positives = 355/821 (42%), Gaps = 44/821 (5%)
Frame = +1
Query: 1357 DPLVLDLDGDGIETVAAG--KNILFDHDGDGITHASGWVKSDDGLLVLDRNGNGRIDNGS 1530
DPL LDLDGDGIETVAA LFDH GI A+GWV +DDGLLV D NGNG IDNG+
Sbjct: 300 DPLALDLDGDGIETVAAKGFAGALFDHRNQGIRTATGWVSADDGLLVRDLNGNGIIDNGA 359
Query: 1531 ELFGADTVLANGHKATSGFEALRDLDSNGDGLFNAADARFTDVRVWRDLNQDGHSQANEL 1710
ELFG +T LA+G A G+ AL +LDSNGD + NAADA F +RVW+DLNQDG SQANEL
Sbjct: 360 ELFGDNTKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGISQANEL 419
Query: 1711 FTLSNLGIASITLTPTDTQRVNLGNGNVMDARGSYTRTDGRSGTVGNLQLGVDQFYRDYR 1890
TL LGI S+ L D + NLGNGN + +GSYT+TDG + +G+L L D + ++
Sbjct: 420 RTLEELGIQSLDLAYKDVNK-NLGNGNTLAQQGSYTKTDGTTAKMGDLLLAADNLHSRFK 478
Query: 1891 GAHDTVTISEAARALPAISGSGAVRDXXXXXXXXXXXXXXXXXXXXGTTQGTLRAALDQV 2070
D V ++ ++G G +RD T+ A LD +
Sbjct: 479 ---DKVELTAEQAKAANLAGIGRLRDLREAAALSGDLANMLKAYSAAETKEAQLALLDNL 535
Query: 2071 IALWASTSTMRXXXXXXXXXXXXHRTVYYHGLVVPGSVASQGEAAVLPWIKEQHARLGPI 2250
I WA T + +T + P VA + A++ + A +
Sbjct: 536 IHKWAETDSNWGKKSPMRLSTDWTQTANEGIALTPSQVAQLKKNALVSLSDKAKAAIDAA 595
Query: 2251 ---IGILEKFNGSRMVSEQNGQISMVGRTFAWQRVVRPDGHSEEAMYLALPPRQLSATFD 2421
I +L+ + G + + + + E+A+ + + T D
Sbjct: 596 RDRIAVLDAYTG-----QDSSTLYYMS--------------EEDALNI------VKVTND 630
Query: 2422 AFAEAYAKLKESIYIRLVLEPRLTDYLSGLRLTDNNGVMAWDASGLEAKLDQTWQHNKAQ 2601
Y L ++IY L+ + RL YL+ + N D SGL + + N +
Sbjct: 631 ----TYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDTFTLDFSGLVQAFNHVKETNPQK 686
Query: 2602 ALQDVMDLYRYGSNAVAASGWKPFDALRHMIDRTAATPDGRQALAAAEITLVSGNAEXXX 2781
A D+ ++ YG G + + D ++ L + L++
Sbjct: 687 AFVDLAEMLAYGELRSWYEGRRLMADYVEEAKKAGKFEDYQKVLGQETVALLA------K 740
Query: 2782 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEGGAXXXXXXXXXXXXXXXXXXXSNRLE 2961
TL GGA ++ LE
Sbjct: 741 TSGTQADDILQNVGFGHNKNVSLYGNDGNDTLIGGA------------------GNDYLE 782
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE----QGGTDK 3129
GG+G+D TY+F +G G DT+ G D
Sbjct: 783 GGSGSD-----------------------------TYVFGKGFGQDTVYNYDYATGRKDI 813
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTL 3309
+ F +GI A + REG +++ + + ++ + ++G+ + I++I F +G +
Sbjct: 814 IRFTDGITADMLTFTREGNHLLIKAKDDSGQVTVQSYFQNDGSGAYR--IDEIHFDNGKV 871
Query: 3310 WTPEX----------------XXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXX 3441
G+D L G G D+
Sbjct: 872 LDVATVKELVQQSTDGSDRLYAYQSGSTLNGGLGDDYLYGADGNDLLNGDAGNDSIYSGN 931
Query: 3442 XSNRLEGGAGDDVL----------------KVSYWSADNVLSGGTGDDTLYGSAFADTYL 3573
++ L+GG G+D L ++ ++ L GG G+D L G + +DTY+
Sbjct: 932 GNDTLDGGEGNDALYGYNGNDALNGGEGNDHLNGEDGNDTLIGGAGNDYLEGGSGSDTYV 991
Query: 3574 FNQGDGHDTIIE---QGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLT 3744
F +G G DT+ +D + F +G AADV +R G D+VL + D++R+ +
Sbjct: 992 FGEGFGQDTVYNYHVDKNSDTMHF-KGFKAADVHFIRSGSDLVLS-ASEQDNVRISGFFY 1049
Query: 3745 SNGTRNHSADIEQIVFADGTLWTPE 3819
R ++ VF D + P+
Sbjct: 1050 GENHR-----VDTFVFDDAAISNPD 1069
Score = 101 bits (250), Expect = 4e-20
Identities = 88/291 (30%), Positives = 145/291 (49%), Gaps = 53/291 (18%)
Frame = +1
Query: 3949 RLEGGAGDDVLK---------VSYWSAD--NVLIGGTGDDTLYGSAFADTYLFNKGDGHD 4095
+ G DD+L+ VS + D + LIGG G+D L G + +DTY+F KG G D
Sbjct: 740 KTSGTQADDILQNVGFGHNKNVSLYGNDGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQD 799
Query: 4096 TIIE----QGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNH 4263
T+ G D + F +GI A + REG +++ + + ++ + ++G+ +
Sbjct: 800 TVYNYDYATGRKDIIRFTDGITADMLTFTREGNHLLIKAKDDSGQVTVQSYFQNDGSGAY 859
Query: 4264 SADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXS 4443
I++I F +G + + G+D L +Q +
Sbjct: 860 R--IDEIHFDNGKVL--DVATVKELVQQSTDGSDRLYAYQSGSTLNGGLGDDYLYGADGN 915
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKG-------DGHDTII 4602
+ L G AG+D + + ++ L GG G+D LYG D +G DG+DT+I
Sbjct: 916 DLLNGDAGND--SIYSGNGNDTLDGGEGNDALYGYNGNDALNGGEGNDHLNGEDGNDTLI 973
Query: 4603 EQGGTDKL---------VFGAGLSR----------------------KEARFTRSGDDLS 4689
G D L VFG G + + F RSG DL
Sbjct: 974 GGAGNDYLEGGSGSDTYVFGEGFGQDTVYNYHVDKNSDTMHFKGFKAADVHFIRSGSDL- 1032
Query: 4690 LLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIAA 4821
+L +D V ++G+F G H+V++ VF D + + + + I A
Sbjct: 1033 VLSASEQDNVRISGFFYGENHRVDTFVFDDAAISNPDFAKYINA 1076
Score = 93.2 bits (228), Expect = 2e-17
Identities = 82/289 (28%), Positives = 142/289 (48%), Gaps = 50/289 (17%)
Frame = +1
Query: 3451 RLEGGAGDDVLK---------VSYWSAD--NVLSGGTGDDTLYGSAFADTYLFNQGDGHD 3597
+ G DD+L+ VS + D + L GG G+D L G + +DTY+F +G G D
Sbjct: 740 KTSGTQADDILQNVGFGHNKNVSLYGNDGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQD 799
Query: 3598 TIIEQ----GGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNH 3765
T+ G D + F +GI A + REG +++ + + ++ + ++G+ +
Sbjct: 800 TVYNYDYATGRKDIIRFTDGITADMLTFTREGNHLLIKAKDDSGQVTVQSYFQNDGSGAY 859
Query: 3766 SADIEQIVFADGTLWTPEX----------------XXXXXXXXXXXXXNDTLKGWQGKDI 3897
I++I F +G + +D L G G D+
Sbjct: 860 R--IDEIHFDNGKVLDVATVKELVQQSTDGSDRLYAYQSGSTLNGGLGDDYLYGADGNDL 917
Query: 3898 XXXXXXXXXXXXXXXSNRLEGGAGDDVL----------------KVSYWSADNVLIGGTG 4029
++ L+GG G+D L ++ ++ LIGG G
Sbjct: 918 LNGDAGNDSIYSGNGNDTLDGGEGNDALYGYNGNDALNGGEGNDHLNGEDGNDTLIGGAG 977
Query: 4030 DDTLYGSAFADTYLFNKGDGHDTIIE---QGGTDKLVFGEGILAADVRLLREGQDVVLDL 4200
+D L G + +DTY+F +G G DT+ +D + F +G AADV +R G D+VL
Sbjct: 978 NDYLEGGSGSDTYVFGEGFGQDTVYNYHVDKNSDTMHF-KGFKAADVHFIRSGSDLVLS- 1035
Query: 4201 GNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 4317
+ D++R+ + R ++ VF D + P+
Sbjct: 1036 ASEQDNVRISGFFYGENHR-----VDTFVFDDAAISNPD 1069
>gi|4103982|gb|AAD01905.1| (AF030511) ApxIVA var3 [Actinobacillus
pleuropneumoniae]
Length = 1522
Score = 240 bits (605), Expect = 1e-61
Identities = 241/986 (24%), Positives = 405/986 (40%), Gaps = 25/986 (2%)
Frame = +1
Query: 1279 NQTLHTDNASLLDLLHDLFRNSRDERDPLVLDLDGDGIETVAAG--KNILFDHDGDGITH 1452
N + DN S ++ ++ RN D DPL LDLDGDG+ETV+ + LFDH+G GI
Sbjct: 605 NNGSNQDNHSDVNAPNNPGRNY-DIYDPLALDLDGDGLETVSMNGRQGALFDHEGKGIRT 663
Query: 1453 ASGWVKSDDGLLVLDRNGNGRIDNGSELFGADTVLANGHKATSGFEALRDLDSNGDGLFN 1632
A+GW+ +DDG LVLDRN +G I++ SELF L++G + GF L DLD+N D +
Sbjct: 664 ATGWLAADDGFLVLDRNQDGIINDISELFSNKNQLSDGSISAHGFATLADLDTNQDQRID 723
Query: 1633 AADARFTDVRVWRDLNQDGHSQANELFTLSNLGIASITLTPTDTQRVNLGNGNVMDARGS 1812
D F+ +++WRDLNQ+G S+ANELF+L +L I S+ T + + L N++ G
Sbjct: 724 QNDKLFSKLQIWRDLNQNGFSEANELFSLESLNIKSLH-TAYEERNDFLAGNNILAQLGK 782
Query: 1813 YTRTDGRSGTVGNLQLGVDQFYRDYRGAHDTVTISEAARALPAISGSGAVRDXXXXXXXX 1992
Y +TDG G +G+L + FY + + + ++E R ++G+G VRD
Sbjct: 783 YEKTDGTFGQMGDLNFSFNPFYSRFT---EALNLTEQQRRTINLTGTGRVRDLREAAALS 839
Query: 1993 XXXXXXXXXXXXGTTQGTLRAALDQVIALWASTSTMRXXXXXXXXXXXXHRTVYYHGLVV 2172
G+ R L ++ WA+T + +Y ++
Sbjct: 840 EELAALLQQYTKGSDFQAQRELLPAILDKWAATDL---------------QYQHYDKTLL 884
Query: 2173 PGSVASQGEAAVLPWIKEQHARLGPIIGILEKFNGSRMVSEQNGQISMVGRTFAWQRVVR 2352
++ A+V ++ ++L I + + + +I+ + +
Sbjct: 885 KTVESTDSSASV---VRVTPSQLSSIRNVKHDPTVMQNCEQSKAKIATLNSLY------- 934
Query: 2353 PDGHSEEAMYLALPPRQLSATFDAFAEAYAKLKESIYIRLVLEPRLTDYLSGLRLTDNNG 2532
G + + +Y + + D Y E Y L+L+ R+ Y+ + G
Sbjct: 935 --GLNIDQLYYT-TDKDIRYITDKVNNMYQTTGELGYRSLLLQTRVKKYVYSVNAKQFEG 991
Query: 2533 VMAWDASGLEAKLDQTWQHNKAQALQDVMDLYRYGSNAVAASGWKP-FDALRHMIDRTAA 2709
D S EA + T++ + L D+ + + ++ + WK L ID A
Sbjct: 992 KWVADYSRTEALFNSTYKQSPENVLYDLREYLSFYND---PTEWKEGLLLLSRYIDYAKA 1048
Query: 2710 TPDGRQALAAAEITLVSGNAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEGGA 2889
A + +T+ L+G
Sbjct: 1049 QGFYENWAATSNLTI-------------------------ARLREAGVICAESTDLKGDE 1083
Query: 2890 XXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT 3069
+ L GG GND LK SY ADT
Sbjct: 1084 KNNIVLGSQKDNNLSGSAGDDLLIGGEGNDTLKGSYG--------------------ADT 1123
Query: 3070 YLFNQGDGHDTIIEQGGT-------DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIR 3228
Y+F++G G D I E + D L F + + A+V+ R D++L + DS+
Sbjct: 1124 YIFSKGHGQDVIYEYSDSANSKKDIDTLKFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVT 1182
Query: 3229 LKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXX 3408
+K + + + +++ FAD ++ T + GND +K
Sbjct: 1183 VKSFYS-----HVDYQFDKLEFADRSI-TRDELIKAGLHLYGTDGNDDIK---------- 1226
Query: 3409 XXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGD 3588
+ D+++ GG G+D L G ADTY+F++G
Sbjct: 1227 ---------------------------DHADWDSIVEGGKGNDILRGGYGADTYIFSKGH 1259
Query: 3589 GHDTIIEQGGTDK-------LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTS 3747
G D + E D L F + + A+V+ R D++L + DS+ +K +
Sbjct: 1260 GQDIVYEDTNNDNRARDIDTLTFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVTIKSFY-- 1316
Query: 3748 NGTRNH-SADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXX 3924
NH +++ FAD ++ T + +D + W +
Sbjct: 1317 ----NHVDYQCDKLDFADRSI-TRDELGKQGMALFGTDGDDNINDWGRNSV--------- 1362
Query: 3925 XXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTII 4104
++ GAG+D V+ + D+ LIGG G+D L G ADTY+F+KG G D +
Sbjct: 1363 ---------IDAGAGNDT--VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVY 1411
Query: 4105 EQGGTDK-------LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 4236
E D L F + I +++ RE D+++ D + +++W
Sbjct: 1412 EDTNNDNRARDIDTLKFTD-INLSELWFSRENNDLIIKSLLSEDKVTVQNW 1461
Score = 137 bits (342), Expect = 7e-31
Identities = 129/460 (28%), Positives = 212/460 (46%), Gaps = 23/460 (5%)
Frame = +1
Query: 3448 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT-- 3621
N L G AGDD+L GG G+DTL GS ADTY+F++G G D I E +
Sbjct: 1095 NNLSGSAGDDLL-----------IGGEGNDTLKGSYGADTYIFSKGHGQDVIYEYSDSAN 1143
Query: 3622 -----DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQI 3786
D L F + + A+V+ R D++L + DS+ +K + + + +++
Sbjct: 1144 SKKDIDTLKFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVTVKSFYS-----HVDYQFDKL 1197
Query: 3787 VFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGA 3966
FAD ++ E L G G D
Sbjct: 1198 EFADRSITRDELIKAGLH----------LYGTDGND------------------------ 1223
Query: 3967 GDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK------- 4125
D+ + W D+++ GG G+D L G ADTY+F+KG G D + E D
Sbjct: 1224 --DIKDHADW--DSIVEGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRARDIDT 1279
Query: 4126 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNH-SADIEQIVFADGT 4302
L F + + A+V+ R D++L + DS+ +K + NH +++ FAD +
Sbjct: 1280 LTFTD-VNYAEVKFRRVDNDLMLFGYHDTDSVTIKSFY------NHVDYQCDKLDFADRS 1332
Query: 4303 LWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLK 4482
+ T + G+D + W ++ ++ GAG+D
Sbjct: 1333 I-TRDELGKQGMALFGTDGDDNINDW------------------GRNSVIDAGAGNDT-- 1371
Query: 4483 VSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK-------LVFGAG 4641
V+ + D+ L GG G+D L G ADTY+F+KG G D + E D L F
Sbjct: 1372 VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRARDIDTLKF-TD 1430
Query: 4642 LSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESL-VFQDGTVLSAEVERLIA 4818
++ E F+R +DL + SED+VTV W++ H++E++ + + ++S +VE+++
Sbjct: 1431 INLSELWFSRENNDLIIKSLLSEDKVTVQNWYSHQDHKIENIRLSNEQMLVSTQVEKMVE 1490
Query: 4819 AMA 4827
+MA
Sbjct: 1491 SMA 1493
>gi|2961326|emb|CAA04800.1| (AJ001518) bacteriocin [Rhizobium
leguminosarum]
Length = 958
Score = 148 bits (369), Expect = 5e-34
Identities = 164/612 (26%), Positives = 259/612 (41%), Gaps = 26/612 (4%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE----QG 3117
+ ++G GND L G DD L G DTY + +G+G+DTIIE G
Sbjct: 9 DEIQGEEGNDTL-----------YGNENDDLLTGGVGNDTYGYARGEGNDTIIETADNSG 57
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDL-------GNGHDSIRLKDWLTSNGTRNHSAD 3276
D+L+F + I A+++ L ++G D+++++ G+G SI +K + G H
Sbjct: 58 SLDRLIFSD-IDASEIMLRQKGNDLIIEIAESTSGAGDG-GSILVKSSVA--GDLEHG-- 111
Query: 3277 IEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRL 3456
IE I F+DGT+WT + + + G G D L
Sbjct: 112 IESIQFSDGTIWTKQDIISNISVIE----PEGIIGTSGAD------------------SL 149
Query: 3457 EGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTI---IEQGGTDK 3627
EG GDD ++ G GDD L GS D Y+++ G G D I +
Sbjct: 150 EGSRGDD-----------LIIGLAGDDALSGSFGDDVYVYSSGQGGDVINDGVNMSNEID 198
Query: 3628 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTL 3807
++ + AADV + R+G+++ L + + I ++ S+G IE+I F+DGT
Sbjct: 199 VLRLTDLTAADVMVARDGENLTLTIIASGEVITVQKQFLSDGYWG----IEKIEFSDGTS 254
Query: 3808 WTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKV 3987
W E T+ G G D G GD
Sbjct: 255 WNRETILDIGRDDDA----PTVIGTSGNDTL-------------------NGTGD----- 286
Query: 3988 SYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTI-----IEQGGTDKLVFGEGILA 4152
++V GG G+D L G+ +D YL+ GDG D I + T KL+ I +
Sbjct: 287 -----NDVFDGGQGNDVLVGARGSDKYLYRLGDGSDLIDEVDWLNDVDTLKLI---NISS 338
Query: 4153 ADVRLLREGQDVVLDLGNGHDSIRLKD-WLTSNGTRNHSADIEQIVFADGTLWTPEXXXX 4329
+DV + G ++ + + + D I +KD W TS G +A +E I FADGT
Sbjct: 339 SDVVAVHNGVNLQITITSTGDVITVKDQWYTSWG----NAGLESIEFADGTWDREAIMAI 394
Query: 4330 XXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNV 4509
GNDT++G + D+
Sbjct: 395 EGIPIVGTNGNDTIEG--------------------------------------TTDDDN 416
Query: 4510 LSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ----GGTDKLVFGAGLSRKEARFTRSG 4677
++GG GDD L G +D Y+++ GDG+D + ++ GG D L ++ + TR G
Sbjct: 417 ITGGLGDDHLSGRLGSDVYVYSSGDGNDVLDDKGSDIGGVDVLRL-TNVNAADIVATRDG 475
Query: 4678 DDLSLLFNGSEDQVTVAGWFNGSG--HQVESLVFQDGT 4785
L+L + +T+ ++ + E + F DG+
Sbjct: 476 LALTLRIISTNALITIEQQYSSRNDPYGFEKIEFADGS 513
Score = 142 bits (354), Expect = 3e-32
Identities = 159/616 (25%), Positives = 251/616 (39%), Gaps = 22/616 (3%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG----GTDK 3129
G GND ++ + + D+ + GG GDD L G +D Y+++ GDG+D + ++G G D
Sbjct: 401 GTNGNDTIEGT--TDDDNITGGLGDDHLSGRLGSDVYVYSSGDGNDVLDDKGSDIGGVDV 458
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTL 3309
L + AAD+ R+G + L + + + I ++ +S RN E+I FADG+
Sbjct: 459 LRL-TNVNAADIVATRDGLALTLRIISTNALITIEQQYSS---RNDPYGFEKIEFADGSS 514
Query: 3310 WTPEXXXXXXXX--XXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL 3483
W + GNDTL G
Sbjct: 515 WNRDALMELGRIPNIVGTSGNDTLTG---------------------------------- 540
Query: 3484 KVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIE---QGGTDKLVFGEGILA 3654
W + + SGG GDD L G +DTY++N GDG D + + ++ I A
Sbjct: 541 ---IWFNETI-SGGLGDDVLMGDYGSDTYVYNSGDGSDRVDDDSYSSSDSDILRLVDINA 596
Query: 3655 ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXX 3834
D+ L R G D+ + + + + D +E+I FADG+
Sbjct: 597 GDISLARSGLDLKITILATGAIMTIDDQFDPRWYYG----LEKIEFADGS------YLSR 646
Query: 3835 XXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVL 4014
+ TL G D SA++ L
Sbjct: 647 ADLMAINESSQTLVGTSAVDFLTSA-----------------------------SANDTL 677
Query: 4015 IGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ-----GGTDKLVFGEGILAADVRLLREG 4179
G GDD + G+A +D Y++ GDG+D I ++ D L + + A+DV L+R G
Sbjct: 678 EGKQGDDWMNGAAGSDIYIYAAGDGNDNITDREDDRLSDIDVLRLTD-LNASDVALVRAG 736
Query: 4180 QDV-VLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE-XXXXXXXXXXXX 4353
D+ V L GH+ + W +++ A IE+I FADG+ W
Sbjct: 737 PDLRVRILSTGHE---ITVW-QQFSSQSDFAGIERIEFADGSSWDRSVIMAAESGEITGT 792
Query: 4354 PGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDD 4533
GNDT L G +GD D+V +GG GDD
Sbjct: 793 SGNDT---------------------------LNGTSGD----------DDVFNGGLGDD 815
Query: 4534 TLYGSAFADTYLFNKGDGHDTI----IEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFN 4701
LYG+ D YL++ GDG D I E D L F ++ + R+G +L +
Sbjct: 816 HLYGAGGTDVYLYSSGDGSDYIDDEATEPNSVDTLRF-TDINESDISVARNGVNLDITVL 874
Query: 4702 GSEDQVTV-AGWFNGSGH-QVESLVFQDGTVLSAEVER 4809
+ D +T+ W++ +G+ E + F + + + +R
Sbjct: 875 ATGDVITIDEQWYDENGYWGFEKIEFTGNSAICSTSQR 912
Score = 130 bits (323), Expect = 1e-28
Identities = 152/608 (25%), Positives = 246/608 (40%), Gaps = 20/608 (3%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTI-----IEQGGTD 3126
G +GND L + ++V GG G+D L G+ +D YL+ GDG D I + T
Sbjct: 274 GTSGNDTLNGT--GDNDVFDGGQGNDVLVGARGSDKYLYRLGDGSDLIDEVDWLNDVDTL 331
Query: 3127 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKD-WLTSNGTRNHSADIEQIVFADG 3303
KL+ I ++DV + G ++ + + + D I +KD W TS G +A +E I FADG
Sbjct: 332 KLI---NISSSDVVAVHNGVNLQITITSTGDVITVKDQWYTSWG----NAGLESIEFADG 384
Query: 3304 TLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL 3483
T GNDT++G
Sbjct: 385 TWDREAIMAIEGIPIVGTNGNDTIEG---------------------------------- 410
Query: 3484 KVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ----GGTDKLVFGEGIL 3651
+ D+ ++GG GDD L G +D Y+++ GDG+D + ++ GG D L +
Sbjct: 411 ----TTDDDNITGGLGDDHLSGRLGSDVYVYSSGDGNDVLDDKGSDIGGVDVLRL-TNVN 465
Query: 3652 AADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXX 3831
AAD+ R+G + L + + + I ++ +S RN E+I FADG+ W +
Sbjct: 466 AADIVATRDGLALTLRIISTNALITIEQQYSS---RNDPYGFEKIEFADGSSWNRDALME 522
Query: 3832 XXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNV 4011
+ G +G+D L W +
Sbjct: 523 LGRI----------------------------------PNIVGTSGNDTL-TGIW-FNET 546
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIE---QGGTDKLVFGEGILAADVRLLREGQ 4182
+ GG GDD L G +DTY++N GDG D + + ++ I A D+ L R G
Sbjct: 547 ISGGLGDDVLMGDYGSDTYVYNSGDGSDRVDDDSYSSSDSDILRLVDINAGDISLARSGL 606
Query: 4183 DVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN 4362
D+ + + + + D +E+I FADG+
Sbjct: 607 DLKITILATGAIMTIDDQFDPRWYYG----LEKIEFADGS-------------------- 642
Query: 4363 DTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLY 4542
S L G + D L + SA++ L G GDD +
Sbjct: 643 -------------YLSRADLMAINESSQTLVGTSAVDFLTSA--SANDTLEGKQGDDWMN 687
Query: 4543 GSAFADTYLFNKGDGHDTIIEQGGTDKL-----VFGAGLSRKEARFTRSGDDLSLLFNGS 4707
G+A +D Y++ GDG+D I ++ D+L + L+ + R+G DL + +
Sbjct: 688 GAAGSDIYIYAAGDGNDNITDR-EDDRLSDIDVLRLTDLNASDVALVRAGPDLRVRILST 746
Query: 4708 EDQVTVAGWFNGSGH--QVESLVFQDGT 4785
++TV F+ +E + F DG+
Sbjct: 747 GHEITVWQQFSSQSDFAGIERIEFADGS 774
Score = 88.2 bits (215), Expect = 6e-16
Identities = 80/281 (28%), Positives = 127/281 (44%), Gaps = 15/281 (5%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIE----QGGTDK 4125
G G D ++ ++ L G DD L G DTY + +G+G+DTIIE G D+
Sbjct: 4 GRGGQDEIQGE--EGNDTLYGNENDDLLTGGVGNDTYGYARGEGNDTIIETADNSGSLDR 61
Query: 4126 LVFGEGILAADVRLLREGQDVVLDL-------GNGHDSIRLKDWLTSNGTRNHSADIEQI 4284
L+F + I A+++ L ++G D+++++ G+G SI +K + G H IE I
Sbjct: 62 LIFSD-IDASEIMLRQKGNDLIIEIAESTSGAGDG-GSILVKSSVA--GDLEHG--IESI 115
Query: 4285 VFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGA 4464
F+DGT+WT Q ++ LEG
Sbjct: 116 QFSDGTIWTK----------------------QDIISNISVIEPEGIIGTSGADSLEGSR 153
Query: 4465 GDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTI---IEQGGTDKLVFG 4635
GDD ++ G GDD L GS D Y+++ G G D I + ++
Sbjct: 154 GDD-----------LIIGLAGDDALSGSFGDDVYVYSSGQGGDVINDGVNMSNEIDVLRL 202
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGH-QVESLVFQDGTVLSAE 4800
L+ + R G++L+L S + +TV F G+ +E + F DGT + E
Sbjct: 203 TDLTAADVMVARDGENLTLTIIASGEVITVQKQFLSDGYWGIEKIEFSDGTSWNRE 258
Score = 53.5 bits (126), Expect = 2e-05
Identities = 37/103 (35%), Positives = 54/103 (51%), Gaps = 5/103 (4%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTI----IEQ 3114
S + G +GND L + D+V GG GDD LYG+ D YL++ GDG D I E
Sbjct: 786 SGEITGTSGNDTLNGTSGD-DDVFNGGLGDDHLYGAGGTDVYLYSSGDGSDYIDDEATEP 844
Query: 3115 GGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRL-KDWLTSNG 3255
D L F + I +D+ + R G ++ + + D I + + W NG
Sbjct: 845 NSVDTLRFTD-INESDISVARNGVNLDITVLATGDVITIDEQWYDENG 891
>gi|117789|sp|P15318|CYAA_BORPE BIFUNCTIONAL HEMOLYSIN-ADENYLATE
CYCLASE PRECURSOR (CYCLOLYSIN) (ACT) (AC-HLY) [CONTAINS:
CALMODULIN-SENSITIVE ADENYLATE CYCLASE (ATP
PYROPHOSPHATE-LYASE) (ADENYLYL CYCLASE); HEMOLYSIN]
>gi|69555|pir||OYBRC cyclolysin - Bordetella pertussis
>gi|396666|emb|CAA68613| (Y00545) calmodulin-sensitive
adenylate cyclase (AA 1-1706) [Bordetella pertussis]
Length = 1706
Score = 145 bits (363), Expect = 2e-33
Identities = 178/629 (28%), Positives = 253/629 (39%), Gaps = 20/629 (3%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT-- 3123
N L G GND ++ D++L GG G DTLYG DG+D ++ T
Sbjct: 1152 NELWGHDGNDTIRGR--GGDDILRGGLGLDTLYGE-----------DGNDIFLQDDETVS 1198
Query: 3124 DKLVFGEGILAADVRLLREGQDVVL--DLGNGHDSIRLKDWLTSNGTR--NHSADIEQIV 3291
D + G G+ D + +V + G G ++ ++W+ ++ ++ +
Sbjct: 1199 DDIDGGAGLDTVDYSAMIHPGRIVAPHEYGFGIEADLSREWVRKASALGVDYYDNVRNVE 1258
Query: 3292 FADGTLWTPEXXXXXXXXXXXXPG-NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGA 3468
GT G +DT++G G D+ L GG
Sbjct: 1259 NVIGTSMKDVLIGDAQANTLMGQGGDDTVRGGDGDDL------------------LFGGD 1300
Query: 3469 GDDVLKVSYWSADN-VLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEG 3645
G+D+L Y A N L GG GDDTL G A D + Q HD + G D + + +
Sbjct: 1301 GNDML---YGDAGNDTLYGGLGDDTLEGGAGNDWFGQTQAREHDVLRGGDGVDTVDYSQT 1357
Query: 3646 ILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHS--ADIEQIVFADGTLWTPE 3819
A + R G ++ DLG G D L G+ + + IE +V +
Sbjct: 1358 GAHAGIAAGRIGLGILADLGAGR-----VDKLGEAGSSAYDTVSGIENVVGTE------- 1405
Query: 3820 XXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS 3999
+ L+G G D+ L GG GDDVL
Sbjct: 1406 ----LADRITGDAQANVLRGAGGADV------------------LAGGEGDDVLLGG--D 1441
Query: 4000 ADNVLIGGTGDDTLYGSAFADTY---------LFNKGDGHDTIIEQGGTDKLVFGEGILA 4152
D+ L G G D LYG A D + L + GDG DT+ G G G+ A
Sbjct: 1442 GDDQLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGRDTVDFSGP------GRGLDA 1495
Query: 4153 ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXX 4332
+ V L LG G S+ + + TSN RN IE V
Sbjct: 1496 G-------AKGVFLSLGKGFASL-MDEPETSNVLRN----IENAV-----------GSAR 1532
Query: 4333 XXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVL 4512
G + L G ++ L GGAGDDVL S ++L
Sbjct: 1533 DDVLIGDAGANVLNG------------------LAGNDVLSGGAGDDVLLGDEGS--DLL 1572
Query: 4513 SGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ-GGTDKLVFGAGLSRKEARFTRSGDDLS 4689
SG G+D L+G DTYLF G GHDTI E GG D + AG + F R G+DL
Sbjct: 1573 SGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGAD--QLWFARQGNDLE 1630
Query: 4690 LLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIAAMALSP 4836
+ G++D +TV W+ + H+VE + + V A +E+L+ AMA P
Sbjct: 1631 IRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYP 1679
Score = 89.3 bits (218), Expect = 2e-16
Identities = 140/559 (25%), Positives = 206/559 (36%), Gaps = 18/559 (3%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GGAGND + + + DN L GG+GDD L G A DT + G+G +T+I G D +
Sbjct: 1015 GGAGNDSITGN--AHDNFLAGGSGDDRLDGGAGNDTLV--GGEGQNTVIGGAGDDVFLQD 1070
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3321
G+ + LD G G D+++ S D + AD T E
Sbjct: 1071 LGVWSNQ-----------LDGGAGVDTVKYNVHQPSEERLERMGDTG--IHADLQKGTVE 1117
Query: 3322 XXXXXXXXXXXXPGN-DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYW 3498
N + L G + D N L G G+D ++
Sbjct: 1118 KWPALNLFSVDHVKNIENLHGSRLND---------RIAGDDQDNELWGHDGNDTIRGR-- 1166
Query: 3499 SADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT--DKLVFGEGILAADVRLL 3672
D++L GG G DTLYG DG+D ++ T D + G G+ D +
Sbjct: 1167 GGDDILRGGLGLDTLYGE-----------DGNDIFLQDDETVSDDIDGGAGLDTVDYSAM 1215
Query: 3673 REGQDVVL--DLGNGHDSIRLKDWLTSNGTR--NHSADIEQIVFADGTLWTPEXXXXXXX 3840
+V + G G ++ ++W+ ++ ++ + GT
Sbjct: 1216 IHPGRIVAPHEYGFGIEADLSREWVRKASALGVDYYDNVRNVENVIGTSMKDVLIGDAQA 1275
Query: 3841 XXXXXXX-NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN-VL 4014
+DT++G G D+ L GG G+D+L Y A N L
Sbjct: 1276 NTLMGQGGDDTVRGGDGDDL------------------LFGGDGNDML---YGDAGNDTL 1314
Query: 4015 IGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVL 4194
GG GDDTL G A D + + HD + G D + + + A + R G ++
Sbjct: 1315 YGGLGDDTLEGGAGNDWFGQTQAREHDVLRGGDGVDTVDYSQTGAHAGIAAGRIGLGILA 1374
Query: 4195 DLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLK 4374
DLG G D L G+ + G + +
Sbjct: 1375 DLGAGR-----VDKLGEAGSSAYD---------------------------TVSGIENVV 1402
Query: 4375 GWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAF 4554
G + ++ L GG GDDVL D+ LSG G D LYG A
Sbjct: 1403 GTELADRITGDAQANVLRGAGGADVLAGGEGDDVLLGG--DGDDQLSGDAGRDRLYGEAG 1460
Query: 4555 ADTY---------LFNKGDGHDTIIEQGGTDKLVFGA 4638
D + L + GDG DT+ G L GA
Sbjct: 1461 DDWFFQDAANAGNLLDGGDGRDTVDFSGPGRGLDAGA 1497
Score = 84.3 bits (205), Expect = 8e-15
Identities = 88/264 (33%), Positives = 113/264 (42%), Gaps = 19/264 (7%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTY------------------ 3072
+N L G G DVL D+VL+GG GDD L G A D
Sbjct: 1416 ANVLRGAGGADVLAGG--EGDDVLLGGDGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGN 1473
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 3252
L + GDG DT+ G G G+ A + V L LG G S+ + + TSN
Sbjct: 1474 LLDGGDGRDTVDFSGP------GRGLDAG-------AKGVFLSLGKGFASL-MDEPETSN 1519
Query: 3253 GTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXX 3432
RN IE V G + L G G D+
Sbjct: 1520 VLRN----IENAV-----------GSARDDVLIGDAGANVLNGLAGNDV----------- 1553
Query: 3433 XXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ 3612
L GGAGDDVL S ++LSG G+D L+G DTYLF G GHDTI E
Sbjct: 1554 -------LSGGAGDDVLLGDEGS--DLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYES 1604
Query: 3613 -GGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
GG D + G A + R+G D+ + + D++ + DW
Sbjct: 1605 GGGHDTIRINAG--ADQLWFARQGNDLEIRILGTDDALTVHDW 1645
Score = 37.9 bits (86), Expect = 0.75
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GGAG+D + + + DN L+GG+GDD L G A G+DT++ G + ++ G
Sbjct: 1015 GGAGNDSITGN--AHDNFLAGGSGDDRLDGGA-----------GNDTLVGGEGQNTVIGG 1061
Query: 4636 AG 4641
AG
Sbjct: 1062 AG 1063
>gi|6648078|sp|Q57506|CYAA_BORBR BIFUNCTIONAL HEMOLYSIN-ADENYLATE
CYCLASE PRECURSOR (CYCLOLYSIN) (ACT) (AC-HLY) [CONTAINS:
CALMODULIN-SENSITIVE ADENYLATE CYCLASE (ATP
PYROPHOSPHATE-LYASE) (ADENYLYL CYCLASE); HEMOLYSIN]
>gi|1924923|emb|CAA85481| (Z37112) adenylate cyclase
hemolysin [Bordetella bronchiseptica]
Length = 1705
Score = 139 bits (347), Expect = 2e-31
Identities = 180/629 (28%), Positives = 247/629 (38%), Gaps = 26/629 (4%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
N L G GND + D++L GG G DTLYG D +L + D I G D
Sbjct: 1151 NELWGDDGNDTIHGR--GGDDILRGGLGLDTLYGEDGNDIFLQDDETVSDDIDGGAGLDT 1208
Query: 3130 LVFGEGILAADVRLLRE-GQDVVLDLGNGHDSIRLKDWLTSNGTR--NHSADIEQIVFAD 3300
+ + I A + E G + DL G W+ R ++ + +
Sbjct: 1209 VDYSAMIHAGKIVAPHEYGFGIEADLSEG--------WVRKAARRGMDYYDSVRSVENVI 1260
Query: 3301 GTLWTPEXXXXXXXXXXXXPG-NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDD 3477
GT G +DT++G G D+ L GG G+D
Sbjct: 1261 GTSMKDVLIGDAQANTLMGQGGDDTVRGGDGDDL------------------LFGGDGND 1302
Query: 3478 VLKVSYWSADN-VLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA 3654
+L Y A N L GG GDDTL G A D + HD + G D + + +
Sbjct: 1303 ML---YGDAGNDTLYGGLGDDTLEGGAGNDWFGQTPAREHDVLRGGAGVDTVDYSQAGAH 1359
Query: 3655 ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHS--ADIEQIVFADGTLWTPEXXX 3828
A V R G ++ DLG G D L G+ + + IE +V +
Sbjct: 1360 AGVATGRIGLGILADLGAGR-----VDKLGEAGSSAYDTVSGIENVVGTE---------- 1404
Query: 3829 XXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 4008
+ L+G G D+ L GG GDDVL D+
Sbjct: 1405 -LADRITGDAQANVLRGAGGADV------------------LAGGEGDDVLLGG--DGDD 1443
Query: 4009 VLIGGTGDDTLYGSAFADTY---------LFNKGDGHDTIIEQGGTDKLVFGEGILAADV 4161
L G G D LYG A D + L + GDG+DT+ G G G+ A
Sbjct: 1444 QLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGNDTVDFSGP------GRGLDAG-- 1495
Query: 4162 RLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXX 4341
+ V L LG G S L D +N H IE V
Sbjct: 1496 -----AKGVFLSLGKGFAS--LMDEPETNNVLRH---IENAV------------------ 1527
Query: 4342 XXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNV---- 4509
+D L G +N L G AG+DVL + AD+V
Sbjct: 1528 --GSVRDDVLIG------------------DAGANVLNGLAGNDVLSAA--PADDVLLGD 1565
Query: 4510 -----LSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ-GGTDKLVFGAGLSRKEARFTR 4671
LSG G+D L+G DTYLF G GHDTI E GG D + AG + F R
Sbjct: 1566 EGSDLLSGDAGNDDLFGGQGDDTYLFGAGYGHDTIYESGGGHDTIRINAGAD--QLWFAR 1623
Query: 4672 SGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIAAMALSP 4836
G+DL + G++D +TV W+ + H+VE++ + + A +E+L+ AMA P
Sbjct: 1624 QGNDLEIRILGTDDALTVHDWYRDADHRVEAIHAANQAIDPAGIEKLVEAMAQYP 1678
Score = 94.8 bits (232), Expect = 6e-18
Identities = 142/559 (25%), Positives = 199/559 (35%), Gaps = 15/559 (2%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GGAGND + + + DN L GG GDD L G A DT + G+GH+T++ G D +
Sbjct: 1014 GGAGNDSITGN--AHDNFLAGGAGDDRLDGGAGNDTLV--GGEGHNTVVGGAGDDVFLQD 1069
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3321
G+ + LD G G D+++ S D + AD T E
Sbjct: 1070 LGVWSNQ-----------LDGGAGVDTVKYNVHQPSEERLERMGDTG--IHADLQKGTVE 1116
Query: 3322 XXXXXXXXXXXXPGN-DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYW 3498
N + L G D ++ + G GDD+L+
Sbjct: 1117 KWPALNLFSVDHVKNIENLHGSSLNDSIAGDDRDNELWGDDGNDTIHGRGGDDILR---- 1172
Query: 3499 SADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 3678
GG G DTLYG D +L + D I G D + + I A + E
Sbjct: 1173 -------GGLGLDTLYGEDGNDIFLQDDETVSDDIDGGAGLDTVDYSAMIHAGKIVAPHE 1225
Query: 3679 -GQDVVLDLGNGHDSIRLKDWLTSNGTR--NHSADIEQIVFADGTLWTPEXXXXXXXXXX 3849
G + DL G W+ R ++ + + GT
Sbjct: 1226 YGFGIEADLSEG--------WVRKAARRGMDYYDSVRSVENVIGTSMKDVLIGDAQANTL 1277
Query: 3850 XXXX-NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN-VLIGG 4023
+DT++G G D+ L GG G+D+L Y A N L GG
Sbjct: 1278 MGQGGDDTVRGGDGDDL------------------LFGGDGNDML---YGDAGNDTLYGG 1316
Query: 4024 TGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLG 4203
GDDTL G A D + HD + G D + + + A V R G ++ DLG
Sbjct: 1317 LGDDTLEGGAGNDWFGQTPAREHDVLRGGAGVDTVDYSQAGAHAGVATGRIGLGILADLG 1376
Query: 4204 NGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQ 4383
G D L G+ + G + + G +
Sbjct: 1377 AGR-----VDKLGEAGSSAYD---------------------------TVSGIENVVGTE 1404
Query: 4384 XXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT 4563
++ L GG GDDVL D+ LSG G D LYG A D
Sbjct: 1405 LADRITGDAQANVLRGAGGADVLAGGEGDDVLLGG--DGDDQLSGDAGRDRLYGEAGDDW 1462
Query: 4564 Y---------LFNKGDGHDTIIEQGGTDKLVFGA 4638
+ L + GDG+DT+ G L GA
Sbjct: 1463 FFQDAANAGNLLDGGDGNDTVDFSGPGRGLDAGA 1496
Score = 64.4 bits (154), Expect = 8e-09
Identities = 75/264 (28%), Positives = 100/264 (37%), Gaps = 18/264 (6%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTY------------------ 3072
+N L G G DVL D+VL+GG GDD L G A D
Sbjct: 1415 ANVLRGAGGADVLAGG--EGDDVLLGGDGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGN 1472
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 3252
L + GDG+DT+ G G G+ A + V L LG G S L D +N
Sbjct: 1473 LLDGGDGNDTVDFSGP------GRGLDAG-------AKGVFLSLGKGFAS--LMDEPETN 1517
Query: 3253 GTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXX 3432
H + V D + G + L G G D+
Sbjct: 1518 NVLRHIENAVGSVRDDVLI--------------GDAGANVLNGLAGNDVLSAAPADDVLL 1563
Query: 3433 XXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ 3612
S+ L G AG+D L + G G DT+Y S G GHDTI
Sbjct: 1564 GDEGSDLLSGDAGNDDLFGGQGDDTYLFGAGYGHDTIYES----------GGGHDTIRIN 1613
Query: 3613 GGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
G D+L F R+G D+ + + D++ + DW
Sbjct: 1614 AGADQLWFA-----------RQGNDLEIRILGTDDALTVHDW 1644
Score = 43.8 bits (101), Expect = 0.013
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GGAG+D + + + DN L+GG GDD L G A DT + G+GH+T++ G D +
Sbjct: 1014 GGAGNDSITGN--AHDNFLAGGAGDDRLDGGAGNDTLV--GGEGHNTVVGGAGDDVFLQD 1069
Query: 4636 AGL 4644
G+
Sbjct: 1070 LGV 1072
>gi|1073227|pir||S51672 adenylate cyclase hemolysin - Bordetella
bronchiseptica
Length = 1705
Score = 139 bits (347), Expect = 2e-31
Identities = 180/629 (28%), Positives = 251/629 (39%), Gaps = 26/629 (4%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
N L G GND + D++L GG G DTLYG D +L + D I G D
Sbjct: 1151 NELWGHDGNDTIHGR--RGDDILRGGLGLDTLYGEDGNDIFLQDDETVSDDIDGGAGLDT 1208
Query: 3130 LVFGEGILAADVRLLRE-GQDVVLDLGNGHDSIRLKDWLTSNGTR--NHSADIEQIVFAD 3300
+ + I A ++ E G + DL G W+ R ++ + +
Sbjct: 1209 VDYAAMIHAGNIVAPHEYGFGIEADLSEG--------WVRKAARRGMDYYDSVRSVENVI 1260
Query: 3301 GTLWTPEXXXXXXXXXXXXPG-NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDD 3477
GT G +DT++G G D+ L GG G+D
Sbjct: 1261 GTSMKDVLIGDAQANTLMGQGGDDTVRGGDGDDL------------------LFGGDGND 1302
Query: 3478 VLKVSYWSADN-VLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA 3654
+L Y A N L GG GDDTL G A D + HD + G D + + +
Sbjct: 1303 ML---YGDAGNDTLYGGLGDDTLEGGAGNDWFGQTPAREHDVLRGGAGVDTVDYSQAGAH 1359
Query: 3655 ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHS--ADIEQIVFADGTLWTPEXXX 3828
A V R G ++ DLG G D L G+ + + IE +V +
Sbjct: 1360 AGVATGRIGLGILADLGAGR-----VDKLGEAGSSAYDTVSGIENVVGTE---------- 1404
Query: 3829 XXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 4008
+ L+G G D+ L GG GDDVL D+
Sbjct: 1405 -LADRITGDAQANVLRGAGGADV------------------LAGGEGDDVLLGG--DGDD 1443
Query: 4009 VLIGGTGDDTLYGSAFADTY---------LFNKGDGHDTIIEQGGTDKLVFGEGILAADV 4161
L G G D LYG A D + L + GDG+DT+ G G G+ A
Sbjct: 1444 QLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGNDTVDFSGP------GRGLDAG-- 1495
Query: 4162 RLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXX 4341
+ V L LG G S+ + + TSN R+ IE V
Sbjct: 1496 -----AKGVFLSLGKGFASL-MDEPETSNVLRH----IENAV------------------ 1527
Query: 4342 XXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVL--- 4512
+D L G +N L G AG+DVL + AD+VL
Sbjct: 1528 --GSVRDDVLIG------------------DAGANVLNGLAGNDVLSAA--PADDVLLGD 1565
Query: 4513 ------SGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ-GGTDKLVFGAGLSRKEARFTR 4671
SG G+D L+G DTYLF G GHDTI E GG D + AG + F R
Sbjct: 1566 EGSDLLSGDAGNDDLFGGQGDDTYLFGAGYGHDTIYESGGGHDTIRINAGAD--QLWFAR 1623
Query: 4672 SGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIAAMALSP 4836
G+DL + G++D +TV W+ + H+VE++ + + A +E+L+ AMA P
Sbjct: 1624 QGNDLEIRILGTDDALTVHDWYRDADHRVEAIHAANQAIDPAGIEKLVEAMAQYP 1678
Score = 95.2 bits (233), Expect = 4e-18
Identities = 142/559 (25%), Positives = 201/559 (35%), Gaps = 15/559 (2%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GGAGND + + + DN L GG GDD L G A DT + G+GH+T++ G D +
Sbjct: 1014 GGAGNDSITGN--AHDNFLAGGAGDDRLDGGAGNDTLV--GGEGHNTVVGGAGDDVFLQD 1069
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3321
G+ + LD G G D+++ S D + AD T E
Sbjct: 1070 LGVWSNQ-----------LDGGAGVDTVKYNVHQPSEERLERMGDTG--IHADLQKGTVE 1116
Query: 3322 XXXXXXXXXXXXPGN-DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYW 3498
N + L G D ++ + G GDD+L+
Sbjct: 1117 KWPALNLFSVDHVKNIENLHGSSLNDSIAGDDRDNELWGHDGNDTIHGRRGDDILR---- 1172
Query: 3499 SADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 3678
GG G DTLYG D +L + D I G D + + I A ++ E
Sbjct: 1173 -------GGLGLDTLYGEDGNDIFLQDDETVSDDIDGGAGLDTVDYAAMIHAGNIVAPHE 1225
Query: 3679 -GQDVVLDLGNGHDSIRLKDWLTSNGTR--NHSADIEQIVFADGT-LWTPEXXXXXXXXX 3846
G + DL G W+ R ++ + + GT +
Sbjct: 1226 YGFGIEADLSEG--------WVRKAARRGMDYYDSVRSVENVIGTSMKDVLIGDAQANTL 1277
Query: 3847 XXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN-VLIGG 4023
+DT++G G D+ L GG G+D+L Y A N L GG
Sbjct: 1278 MGQGGDDTVRGGDGDDL------------------LFGGDGNDML---YGDAGNDTLYGG 1316
Query: 4024 TGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLG 4203
GDDTL G A D + HD + G D + + + A V R G ++ DLG
Sbjct: 1317 LGDDTLEGGAGNDWFGQTPAREHDVLRGGAGVDTVDYSQAGAHAGVATGRIGLGILADLG 1376
Query: 4204 NGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQ 4383
G D L G+ + G + + G +
Sbjct: 1377 AGR-----VDKLGEAGSSAYD---------------------------TVSGIENVVGTE 1404
Query: 4384 XXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT 4563
++ L GG GDDVL D+ LSG G D LYG A D
Sbjct: 1405 LADRITGDAQANVLRGAGGADVLAGGEGDDVLLGG--DGDDQLSGDAGRDRLYGEAGDDW 1462
Query: 4564 Y---------LFNKGDGHDTIIEQGGTDKLVFGA 4638
+ L + GDG+DT+ G L GA
Sbjct: 1463 FFQDAANAGNLLDGGDGNDTVDFSGPGRGLDAGA 1496
Score = 67.9 bits (163), Expect = 7e-10
Identities = 98/387 (25%), Positives = 141/387 (36%), Gaps = 6/387 (1%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GGAG+D + + + DN L+GG GDD L G A DT + G+GH+T++ G D +
Sbjct: 1014 GGAGNDSITGN--AHDNFLAGGAGDDRLDGGAGNDTLV--GGEGHNTVVGGAGDDVFLQD 1069
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3819
G+ + LD G G D+++ S D + AD T E
Sbjct: 1070 LGVWSNQ-----------LDGGAGVDTVKYNVHQPSEERLERMGDTG--IHADLQKGTVE 1116
Query: 3820 XXXXXXXXXXXXXXN-DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYW 3996
N + L G D ++ + G GDD+L+
Sbjct: 1117 KWPALNLFSVDHVKNIENLHGSSLNDSIAGDDRDNELWGHDGNDTIHGRRGDDILR---- 1172
Query: 3997 SADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 4176
GG G DTLYG D +L + D I G D + + I A ++ E
Sbjct: 1173 -------GGLGLDTLYGEDGNDIFLQDDETVSDDIDGGAGLDTVDYAAMIHAGNIVAPHE 1225
Query: 4177 -GQDVVLDLGNGHDSIRLKDWLTSNGTR--NHSADIEQIVFADGTLWTPEXXXXXXXXXX 4347
G + DL G W+ R ++ + + GT
Sbjct: 1226 YGFGIEADLSEG--------WVRKAARRGMDYYDSVRSVENVIGTSMKDVLIGDAQANTL 1277
Query: 4348 XXP-GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN-VLSGG 4521
G+DT++G + L GG G+D+L Y A N L GG
Sbjct: 1278 MGQGGDDTVRG------------------GDGDDLLFGGDGNDML---YGDAGNDTLYGG 1316
Query: 4522 TGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4620
GDDTL G A D + HD + G D
Sbjct: 1317 LGDDTLEGGAGNDWFGQTPAREHDVLRGGAGVD 1349
Score = 64.0 bits (153), Expect = 1e-08
Identities = 75/264 (28%), Positives = 103/264 (38%), Gaps = 18/264 (6%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTY------------------ 3072
+N L G G DVL D+VL+GG GDD L G A D
Sbjct: 1415 ANVLRGAGGADVLAGG--EGDDVLLGGDGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGN 1472
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 3252
L + GDG+DT+ G G G+ A + V L LG G S+ + + TSN
Sbjct: 1473 LLDGGDGNDTVDFSGP------GRGLDAG-------AKGVFLSLGKGFASL-MDEPETSN 1518
Query: 3253 GTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXX 3432
R+ + + D L G + L G G D+
Sbjct: 1519 VLRHIENAVGSV--RDDVL-------------IGDAGANVLNGLAGNDVLSAAPADDVLL 1563
Query: 3433 XXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ 3612
S+ L G AG+D L + G G DT+Y S G GHDTI
Sbjct: 1564 GDEGSDLLSGDAGNDDLFGGQGDDTYLFGAGYGHDTIYES----------GGGHDTIRIN 1613
Query: 3613 GGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
G D+L F R+G D+ + + D++ + DW
Sbjct: 1614 AGADQLWFA-----------RQGNDLEIRILGTDDALTVHDW 1644
Score = 43.8 bits (101), Expect = 0.013
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GGAG+D + + + DN L+GG GDD L G A DT + G+GH+T++ G D +
Sbjct: 1014 GGAGNDSITGN--AHDNFLAGGAGDDRLDGGAGNDTLV--GGEGHNTVVGGAGDDVFLQD 1069
Query: 4636 AGL 4644
G+
Sbjct: 1070 LGV 1072
>gi|3128317 (AF010496) potential outer membrane secretion protein
[Rhodobacter capsulatus]
Length = 1028
Score = 109 bits (270), Expect = 2e-22
Identities = 163/592 (27%), Positives = 244/592 (40%), Gaps = 62/592 (10%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+ GAG D +++ +A N L G G+DTL G A DT GD D + +GG D L
Sbjct: 280 VRSGAGAD--RITGNTAANRLAAGAGNDTLAGGAGDDTLAGEAGD--DRLAGEGGNDLLT 335
Query: 3136 FGEGILAADVRLLRE--GQDVVLDLGNGHDSIRL------KDWL--------TSNGTRNH 3267
G G AD+ G D + DL D + L DW T+ G R
Sbjct: 336 GGAG---ADIFAFGTGFGSDTIEDLVASIDYVDLTAIAAIADWSALLALMADTATGVRIA 392
Query: 3268 SA--------------DIEQIVFADGT-LWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIX 3402
+A D +FA G+ G DTL G QG D
Sbjct: 393 TAEGTILLSGLAISMLDPTHFLFAGGSGTGGGGGSGGDGLSLAGTAGRDTLLGGQGADTI 452
Query: 3403 XXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGG--TGDDTLYGSAFADTYLF 3576
++ + GGAG+D +S D++ + G +G D ++G A DT L
Sbjct: 453 DGGAGNDSITAGAGNDSVSGGAGNDT--ISLQEGDDIFADGSDSGADVVWGGAGDDT-LT 509
Query: 3577 NQGDGHDTIIEQGGTDKLVFG---------------EGILAADVRLLREGQDVVLDLGNG 3711
++G G D + + G D LV G +G +A G DVV LG G
Sbjct: 510 SRG-GADALHGEAGDDLLVAGPSGCVLSGGLGDDTLQGGIAPTGSATAAGADVV-SLGAG 567
Query: 3712 HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGK 3891
+DS GT + + + + DG DT+ G G+
Sbjct: 568 NDSY--------TGTGDAATGGDSVSGGDGN-----------DRIETGAGVDTILGGAGR 608
Query: 3892 DIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYL 4071
D ++R++ GAGDD+ + + + ++GG G++ L D+
Sbjct: 609 DTISAGAGNDSVTGGADADRIDLGAGDDIFTDTADTGADTVLGGLGNEVLTSLGGRDS-- 666
Query: 4072 FNKGDGHDTIIEQGGTDKLVFG------EGILAADVRLLREGQDVVLDLGNGHDS-IRLK 4230
+ G+G+D++ L G +G ADV G D+V DLG G+DS I
Sbjct: 667 LDGGEGNDSLTASAAGGALQGGLGNDTLQGGAGADVAADSGGNDLV-DLGAGNDSYIASG 725
Query: 4231 DWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXX 4410
D + T + + A G GNDT+ G
Sbjct: 726 DSAGNADTVRGGEGNDALSGAAGA--DSLDGGNGDDRLTGNDGNDTILGGAGQDSITAGA 783
Query: 4411 XXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGH 4590
++R++ GAGDD+ + + + + GG G++ L DT G+
Sbjct: 784 GNDNVSGGAGADRIDLGAGDDIFTDTADAGADAVLGGLGNEVLTSLGGLDTLDGGAGNDR 843
Query: 4591 DTIIEQG-------GTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG 4731
T + G G D L GAG+ +A G+DL L G +D T G
Sbjct: 844 LTASDAGSRLAGGLGNDTLQGGAGI---DAVTDTGGNDLVSLGAG-DDSFTATG 893
Score = 104 bits (257), Expect = 7e-21
Identities = 170/580 (29%), Positives = 242/580 (41%), Gaps = 126/580 (21%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
+NRL GAGND L GG GDDTL G A D L +G G+D + G D
Sbjct: 295 ANRLAAGAGNDTLA-----------GGAGDDTLAGEA-GDDRLAGEG-GNDLLTGGAGAD 341
Query: 3127 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLK------DWLTSNGTRNHSADIEQI 3288
FG G G D + DL D + L DW +A +I
Sbjct: 342 IFAFGTGF----------GSDTIEDLVASIDYVDLTAIAAIADWSALLALMADTATGVRI 391
Query: 3289 VFADGTLWTPEXXXXXXX-----------------------XXXXXPGNDTLKGWQGKDI 3399
A+GT+ G DTL G QG D
Sbjct: 392 ATAEGTILLSGLAISMLDPTHFLFAGGSGTGGGGGSGGDGLSLAGTAGRDTLLGGQGADT 451
Query: 3400 XXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGT--GDDTLYGSAFADTYL 3573
++ + GGAG+D +S D++ + G+ G D ++G A DT L
Sbjct: 452 IDGGAGNDSITAGAGNDSVSGGAGNDT--ISLQEGDDIFADGSDSGADVVWGGAGDDT-L 508
Query: 3574 FNQGDGHDTIIEQGGTDKLVFG---------------EGILAADVRLLREGQDVVLDLGN 3708
++G G D + + G D LV G +G +A G DVV LG
Sbjct: 509 TSRG-GADALHGEAGDDLLVAGPSGCVLSGGLGDDTLQGGIAPTGSATAAGADVV-SLGA 566
Query: 3709 GHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQG 3888
G+DS GT + + + + DG DT+ G G
Sbjct: 567 GNDSY--------TGTGDAATGGDSVSGGDGN-----------DRIETGAGVDTILGGAG 607
Query: 3889 KDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL----------------------------- 3981
+D ++R++ GAGDD+
Sbjct: 608 RDTISAGAGNDSVTGGADADRIDLGAGDDIFTDTADTGADTVLGGLGNEVLTSLGGRDSL 667
Query: 3982 -------KVSYWSADNVLIGGTGDDTLYGSAFADTY-------LFNKGDGHDTIIEQGGT 4119
++ +A L GG G+DTL G A AD L + G G+D+ I G +
Sbjct: 668 DGGEGNDSLTASAAGGALQGGLGNDTLQGGAGADVAADSGGNDLVDLGAGNDSYIASGDS 727
Query: 4120 ----DKLVFGEGILA--------------ADVRLL-REGQDVVLDLGNGHDSIRLKDWLT 4242
D + GEG A D RL +G D +L G G DSI
Sbjct: 728 AGNADTVRGGEGNDALSGAAGADSLDGGNGDDRLTGNDGNDTILG-GAGQDSITAG---A 783
Query: 4243 SNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXX 4422
N + A ++I G + GN+ L
Sbjct: 784 GNDNVSGGAGADRIDLGAGDDIFTDTADAGADAVLGGLGNEVLTSLGGLDTLDGGAGNDR 843
Query: 4423 XXXXXXSNRLEGGAGDDVLK-------VSYWSADNVLSGGTGDDTLYGS----AFADTYL 4569
+RL GG G+D L+ V+ ++++S G GDD+ + A ADT
Sbjct: 844 LTASDAGSRLAGGLGNDTLQGGAGIDAVTDTGGNDLVSLGAGDDSFTATGDSAASADTIS 903
Query: 4570 FNKGD-------GHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDL 4686
G+ G+D ++ + G D L GAG R A +G+DL
Sbjct: 904 AGAGNDRISAGAGNDLLLGEAGNDSLTAGAGNDRLTA---GTGNDL 946
Score = 103 bits (254), Expect = 1e-20
Identities = 141/578 (24%), Positives = 220/578 (37%), Gaps = 26/578 (4%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYW---------SADNVLIG 3024
TL GG ++ + GGAGND + + S +V+ G
Sbjct: 442 TLLGGQGADTIDGGAGNDSITAGAGNDSVSGGAGNDTISLQEGDDIFADGSDSGADVVWG 501
Query: 3025 GTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG-------EGILAADVRLLREG 3183
G GDDTL AD G+ D ++ G + ++ G +G +A G
Sbjct: 502 GAGDDTLTSRGGADAL---HGEAGDDLLVAGPSGCVLSGGLGDDTLQGGIAPTGSATAAG 558
Query: 3184 QDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPG 3363
DVV LG G+DS GT + + + + DG G
Sbjct: 559 ADVV-SLGAGNDSY--------TGTGDAATGGDSVSGGDGN-----------DRIETGAG 598
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
DT+ G G+D ++R++ GAGDD+ + + + + GG G++ L
Sbjct: 599 VDTILGGAGRDTISAGAGNDSVTGGADADRIDLGAGDDIFTDTADTGADTVLGGLGNEVL 658
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG------EGILAADVRLLREGQDVVLDLG 3705
D+ + G+G+D++ L G +G ADV G D+V DLG
Sbjct: 659 TSLGGRDS--LDGGEGNDSLTASAAGGALQGGLGNDTLQGGAGADVAADSGGNDLV-DLG 715
Query: 3706 NGHDS-IRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGW 3882
G+DS I D + T + + A G NDT+ G
Sbjct: 716 AGNDSYIASGDSAGNADTVRGGEGNDALSGAAGA--DSLDGGNGDDRLTGNDGNDTILGG 773
Query: 3883 QGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFAD 4062
G+D ++R++ GAGDD+ + + + ++GG G++ L D
Sbjct: 774 AGQDSITAGAGNDNVSGGAGADRIDLGAGDDIFTDTADAGADAVLGGLGNEVLTSLGGLD 833
Query: 4063 TYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRL---KD 4233
T + G G+D + +L G L D G D V D G G+D + L D
Sbjct: 834 T--LDGGAGNDRLTASDAGSRLAGG---LGNDTLQGGAGIDAVTDTG-GNDLVSLGAGDD 887
Query: 4234 WLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXX 4413
T+ G SAD GND +
Sbjct: 888 SFTATGDSAASAD----------------------TISAGAGNDRI-------------- 911
Query: 4414 XXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHD 4593
++ L G AG+D L + ++ L+ GTG+D + G D ++F GDG D
Sbjct: 912 ----SAGAGNDLLLGEAGNDSLTAG--AGNDRLTAGTGNDLMTGGLGNDVFIFATGDGAD 965
Query: 4594 TIIE 4605
I +
Sbjct: 966 RITD 969
>gi|4104348|gb|AAD02003.1| (AF035192) S-layer-RTX protein
[Campylobacter rectus]
Length = 1238
Score = 103 bits (255), Expect = 1e-20
Identities = 154/563 (27%), Positives = 227/563 (39%), Gaps = 33/563 (5%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNVL----IGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ-G 3117
R EG G +KV NV+ GG D+L G+ D G+G+DT+ G
Sbjct: 536 RYEGKVGEKTIKVDVKDDSNVMGKVINGGNTSDSLRGTKGDDE--IRGGNGNDTVSGGVG 593
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW-LTSNGTR-NHSADIEQIV 3291
G D L +G+G D R+ + +D++LD G G D++ L+D + N + + + E +
Sbjct: 594 GADSL-YGDG---GDDRIEGDLKDIILDGGEGVDTLALEDHEIDLNALQADMIKNFEILD 649
Query: 3292 FADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKD-----IXXXXXXXXXXXXXXXSNRL 3456
G DT+ G D + NR
Sbjct: 650 LGSGNNPKTLRNLTPQNILKITSHKDTILKINGDDKDIAVLSGFTASADTSGLDANYNRY 709
Query: 3457 EG--GAGDDV---LKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT 3621
EG G+ V +K + +A G D + G+ ADT G G + II G
Sbjct: 710 EGLNDKGELVKVDVKKTIKTALATTEATDGPDCIQGTQDADTI---SGKGGNDIIYGNGG 766
Query: 3622 DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADG 3801
D ++G G DV EG D + G G+D I G +N DI D
Sbjct: 767 DDTIYGNG--GNDVLYGNEGADKIYG-GTGNDRIH-------GGAQN---DIIYGDEGDD 813
Query: 3802 TLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL 3981
++ + +D + G QG DI ++R+EGG GDD L
Sbjct: 814 EIYGDDGDDTINGNDG----DDEIDGGQGDDIIHGNDGDDTIRGGAGNDRIEGGQGDDRL 869
Query: 3982 KVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGE------G 4143
++ + GG G+D LYG DT N G G+D I G DK+ G+ G
Sbjct: 870 IGD--EGNDHIEGGDGNDLLYGDNGDDT--INGGTGNDQIYGGEGDDKIYGGQGNDKIYG 925
Query: 4144 ILAADVRLLREGQDVVLDLGNGHDSIR---LKDWLTSNGTRNHSADIEQIVFADGTLWTP 4314
+ D EG D + NG+D I+ D L N + E D T++
Sbjct: 926 LEGNDTIYGGEGDDEIAG-ANGNDIIKGDGGNDILQGNDGNDKIYGGE----GDDTIYGG 980
Query: 4315 EXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYW 4494
E GNDT+ G ++++ GG G+D K+ +
Sbjct: 981 E-------------GNDTIDGEFGNNTIYGNEGDDTIYGGEGNDKIYGGQGND--KIYGY 1025
Query: 4495 SADNVLSGGTGDDTLYGSAFADTYLFNKG-------DGHDTIIEQGGTDKLVFGAG 4641
+N + G +G D++YG DT N G DG+DTI D + GAG
Sbjct: 1026 KGNNTIMGESGKDSIYGGDGDDTIYGNDGNDIIFGNDGNDTIYGNEDNDLVFGGAG 1081
Score = 94.8 bits (232), Expect = 6e-18
Identities = 134/531 (25%), Positives = 197/531 (36%), Gaps = 24/531 (4%)
Frame = +1
Query: 3031 GDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGN 3210
G D + G+ ADT G G + II G D ++G G DV EG D + G
Sbjct: 739 GPDCIQGTQDADTI---SGKGGNDIIYGNGGDDTIYGNG--GNDVLYGNEGADKIYG-GT 792
Query: 3211 GHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQG 3390
G+D I G +N DI D ++ + G+D + G QG
Sbjct: 793 GNDRIH-------GGAQN---DIIYGDEGDDEIYGDDGDDTINGND----GDDEIDGGQG 838
Query: 3391 KDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY 3570
DI ++R+EGG GDD L ++ + GG G+D LYG DT
Sbjct: 839 DDIIHGNDGDDTIRGGAGNDRIEGGQGDDRLIGD--EGNDHIEGGDGNDLLYGDNGDDT- 895
Query: 3571 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 3750
N G G+D I G DK+ G+G D EG D + G G D I +N
Sbjct: 896 -INGGTGNDQIYGGEGDDKIYGGQG---NDKIYGLEGNDTIYG-GEGDDEIA-----GAN 945
Query: 3751 GTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXX 3930
G ND +KG G DI
Sbjct: 946 G------------------------------------NDIIKGDGGNDILQGNDGNDKIY 969
Query: 3931 XXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGD-------G 4089
+ + GG G+D + + +N + G GDDT+YG D +G+ G
Sbjct: 970 GGEGDDTIYGGEGNDTIDGEF--GNNTIYGNEGDDTIYGGEGNDKIYGGQGNDKIYGYKG 1027
Query: 4090 HDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSA 4269
++TI+ + G D + G+G D +G D++ +G+D+I +
Sbjct: 1028 NNTIMGESGKDSIYGGDG---DDTIYGNDGNDIIFG-NDGNDTI-------------YGN 1070
Query: 4270 DIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNR 4449
+ +VF GNDT+ G +
Sbjct: 1071 EDNDLVFGGA-------------------GNDTIDGGKGNDAIYGNNGNDKIYGELNDTL 1111
Query: 4450 LEGGAGDDVL-----------------KVSYWSADNVLSGGTGDDTLYGSAFADTYLFNK 4578
L+GG G D L K+S + + + G TGDDT+ + +F
Sbjct: 1112 LDGGEGYDSLYFNEDIDFDAIRDTLNQKISNF--EQLHLGYTGDDTVKLNNMTAADIFAM 1169
Query: 4579 GDGHDTIIEQGGTDK 4623
D DTI++ G K
Sbjct: 1170 TDNKDTILKIKGDKK 1184
Score = 84.7 bits (206), Expect = 6e-15
Identities = 114/411 (27%), Positives = 179/411 (42%), Gaps = 29/411 (7%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGD-------GHDTI 3105
++R+ GGA ND++ D+ + G GDDT+ G+ D QGD G DTI
Sbjct: 794 NDRIHGGAQNDIIYGD--EGDDEIYGDDGDDTINGNDGDDEIDGGQGDDIIHGNDGDDTI 851
Query: 3106 IEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQ 3285
G D++ G+G D RL+ + + ++ G+G+D + + + T N +Q
Sbjct: 852 RGGAGNDRIEGGQG----DDRLIGDEGNDHIEGGDGNDLLYGDN---GDDTINGGTGNDQ 904
Query: 3286 IVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGG 3465
I +G GNDT+ G +G D ++ L+G
Sbjct: 905 IYGGEGD--DKIYGGQGNDKIYGLEGNDTIYGGEGDDEIAGANGNDIIKGDGGNDILQGN 962
Query: 3466 AGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEG 3645
G+D K+ D+ + GG G+DT+ G +T N+GD DTI G DK+ G+G
Sbjct: 963 DGND--KIYGGEGDDTIYGGEGNDTIDGEFGNNTIYGNEGD--DTIYGGEGNDKIYGGQG 1018
Query: 3646 ILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFA-DG--TLWTP 3816
D +G + ++ +G DSI D + D I+F DG T++
Sbjct: 1019 ---NDKIYGYKGNNTIMG-ESGKDSIYGGD----GDDTIYGNDGNDIIFGNDGNDTIYGN 1070
Query: 3817 EXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL----- 3981
E NDT+ G +G D L+GG G D L
Sbjct: 1071 EDNDLVFGGAG----NDTIDGGKGNDAIYGNNGNDKIYGELNDTLLDGGEGYDSLYFNED 1126
Query: 3982 ------------KVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK 4125
K+S + + + +G TGDDT+ + +F D DTI++ G K
Sbjct: 1127 IDFDAIRDTLNQKISNF--EQLHLGYTGDDTVKLNNMTAADIFAMTDNKDTILKIKGDKK 1184
Query: 4126 LVFG-EGI-LAADVRLLREG 4179
G +G ++AD L +G
Sbjct: 1185 DSVGLKGFKVSADTSGLEDG 1204
Score = 73.4 bits (177), Expect = 2e-11
Identities = 79/297 (26%), Positives = 128/297 (42%), Gaps = 21/297 (7%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYG 3051
T+ GGA ++ +EGG GND+L + D+ + GGTG+D +YG
Sbjct: 850 TIRGGAGNDRIEGGQGDDRLIGDEGNDHIEGGDGNDLLYGD--NGDDTINGGTGNDQIYG 907
Query: 3052 SAFADTYLFNQG-------DGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGN 3210
D QG +G+DTI G D++ G D+ + +G + +L +
Sbjct: 908 GEGDDKIYGGQGNDKIYGLEGNDTIYGGEGDDEIAGANG---NDI-IKGDGGNDILQGND 963
Query: 3211 GHDSIR--LKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGW 3384
G+D I D G N + D E F + T++ E G+DT+ G
Sbjct: 964 GNDKIYGGEGDDTIYGGEGNDTIDGE---FGNNTIYGNE-------------GDDTIYGG 1007
Query: 3385 QGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFAD 3564
+G D +N + G +G D + GG GDDT+YG+ D
Sbjct: 1008 EGNDKIYGGQGNDKIYGYKGNNTIMGESGKDSIY-----------GGDGDDTIYGNDGND 1056
Query: 3565 TYLFNQG-------DGHDTIIEQGGTDKLVFGEGILA-----ADVRLLREGQDVVLDLGN 3708
N G + +D + G D + G+G A + ++ E D +LD G
Sbjct: 1057 IIFGNDGNDTIYGNEDNDLVFGGAGNDTIDGGKGNDAIYGNNGNDKIYGELNDTLLDGGE 1116
Query: 3709 GHDSIRLKDWLTSNGTRN 3762
G+DS+ + + + R+
Sbjct: 1117 GYDSLYFNEDIDFDAIRD 1134
Score = 69.5 bits (167), Expect = 2e-10
Identities = 82/291 (28%), Positives = 122/291 (41%), Gaps = 25/291 (8%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
GND + G +G D ++ + GGAGDD L + +SGG GDDT
Sbjct: 339 GNDIIDGGEGNDTIYGDSGDDTIRGGIGNDGIYGGAGDDTLYGG--DGKDKISGGDGDDT 396
Query: 3541 LYGSAFADTYLFNQGDGHDTIIEQGGTDKLVF---------GEGI-----------LAAD 3660
LYG D N GDG D + G D++ GEG L D
Sbjct: 397 LYGDDGNDQ--MNGGDGKDKVYGGKGNDEIFTYMDDEIVDGGEGTDKLFITSKDDKLKLD 454
Query: 3661 VRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXX 3840
LR+G D + N + + L D N + +I + D T +
Sbjct: 455 FDTLRDGLDKRI---NSFELLHLGD---DGKFFNKAVEITNLTPQDVLAVTDD---ENTK 505
Query: 3841 XXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN---- 4008
D+++ + R EG G+ +KV N
Sbjct: 506 LLIMSDEKDSIR------LKNFTVSSDTTKLRKGYTRYEGKVGEKTIKVDVKDDSNVMGK 559
Query: 4009 VLIGGTGDDTLYGSAFADTYLFNKGDGHDTII-EQGGTDKLVFGEGILAADVRLLREGQD 4185
V+ GG D+L G+ D G+G+DT+ GG D L +G+G D R+ + +D
Sbjct: 560 VINGGNTSDSLRGTKGDDE--IRGGNGNDTVSGGVGGADSL-YGDG---GDDRIEGDLKD 613
Query: 4186 VVLDLGNGHDSIRLKD 4233
++LD G G D++ L+D
Sbjct: 614 IILDGGEGVDTLALED 629
Score = 64.0 bits (153), Expect = 1e-08
Identities = 136/565 (24%), Positives = 219/565 (38%), Gaps = 71/565 (12%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLI----------GGTGDDTLYGSAFADTYLFNQGDGH 3096
++ L GGAGND + Y + DN +I GG G+DT+YG + DT G G+
Sbjct: 313 NDSLFGGAGNDSI---YGNEDNDIIHGDDGNDIIDGGEGNDTIYGDSGDDT--IRGGIGN 367
Query: 3097 DTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSAD 3276
D I G D L G +G+D + G+G D++ D
Sbjct: 368 DGIYGGAGDDTLYGG------------DGKDKISG-GDGDDTLYGDD------------- 401
Query: 3277 IEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRL 3456
GND + G GKD ++
Sbjct: 402 ----------------------------GNDQMNGGDGKD------------------KV 415
Query: 3457 EGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFN---QGDGHDTIIEQG---- 3615
GG G+D ++ + D ++ GG G D L+ ++ D + DG D I
Sbjct: 416 YGGKGND--EIFTYMDDEIVDGGEGTDKLFITSKDDKLKLDFDTLRDGLDKRINSFELLH 473
Query: 3616 -GTDKLVFGEGI-----LAADVRLLREGQDV-VLDLGNGHDSIRLKDWLTSNG------- 3753
G D F + + DV + + ++ +L + + DSIRLK++ S+
Sbjct: 474 LGDDGKFFNKAVEITNLTPQDVLAVTDDENTKLLIMSDEKDSIRLKNFTVSSDTTKLRKG 533
Query: 3754 -TRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXX 3930
TR E+ + D + +D+L+G +G D
Sbjct: 534 YTRYEGKVGEKTIKVD----VKDDSNVMGKVINGGNTSDSLRGTKGDD------------ 577
Query: 3931 XXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDT---- 4098
+ GG G+D + AD+ L G GDD + G + + G+G DT
Sbjct: 578 ------EIRGGNGNDTVSGGVGGADS-LYGDGGDDRIEGD--LKDIILDGGEGVDTLALE 628
Query: 4099 ------------------IIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL-GNGHDSI 4221
I++ G + + ++ + +D +L + G+ D
Sbjct: 629 DHEIDLNALQADMIKNFEILDLGSGNNPKTLRNLTPQNILKITSHKDTILKINGDDKDIA 688
Query: 4222 RLKDWLTSNGTRNHSA---------DIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLK 4374
L + S T A D ++V D + G D ++
Sbjct: 689 VLSGFTASADTSGLDANYNRYEGLNDKGELVKVD----VKKTIKTALATTEATDGPDCIQ 744
Query: 4375 GWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAF 4554
G Q + + G G+DVL AD + GGTG+D ++G A
Sbjct: 745 GTQDADTISGKGGNDIIYGNGGDDTIYGNGGNDVL-YGNEGADKIY-GGTGNDRIHGGAQ 802
Query: 4555 ADTYLFNKG-------DGHDTIIEQGGTDKLVFGAG 4641
D ++G DG DTI G D++ G G
Sbjct: 803 NDIIYGDEGDDEIYGDDGDDTINGNDGDDEIDGGQG 838
Score = 49.6 bits (116), Expect = 2e-04
Identities = 31/95 (32%), Positives = 47/95 (48%), Gaps = 7/95 (7%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
GND+L G G D ++ ++GG G+D + S D+ + GG G+D
Sbjct: 312 GNDSLFGGAGNDSIYGNEDNDIIHGDDGNDIIDGGEGNDTIYGD--SGDDTIRGGIGNDG 369
Query: 3541 LYGSAFADTYL-------FNQGDGHDTIIEQGGTDKLVFGEG 3645
+YG A DT + GDG DT+ G D++ G+G
Sbjct: 370 IYGGAGDDTLYGGDGKDKISGGDGDDTLYGDDGNDQMNGGDG 411
Score = 46.9 bits (109), Expect = 0.002
Identities = 28/94 (29%), Positives = 45/94 (47%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND++ G + DI ++ + G +GDD ++ ++ + GG GDDTL
Sbjct: 322 NDSIYGNEDNDIIHGDDGNDIIDGGEGNDTIYGDSGDDTIRGGI--GNDGIYGGAGDDTL 379
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEG 4143
YG D + GDG DT+ G D++ G+G
Sbjct: 380 YGGDGKDK--ISGGDGDDTLYGDDGNDQMNGGDG 411
Score = 44.9 bits (104), Expect = 0.006
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 4536
GND+L G ++ ++GG G+D + S D+ + GG G+D
Sbjct: 312 GNDSLFGGAGNDSIYGNEDNDIIHGDDGNDIIDGGEGNDTIYGD--SGDDTIRGGIGNDG 369
Query: 4537 LYGSAFADTYL-------FNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLL 4695
+YG A DT + GDG DT+ G D++ G G K+ + G+D +
Sbjct: 370 IYGGAGDDTLYGGDGKDKISGGDGDDTLYGDDGNDQMNGGDG---KDKVYGGKGND--EI 424
Query: 4696 FNGSEDQVTVAG 4731
F +D++ G
Sbjct: 425 FTYMDDEIVDGG 436
Score = 42.2 bits (97), Expect = 0.038
Identities = 24/64 (37%), Positives = 36/64 (55%), Gaps = 7/64 (10%)
Frame = +1
Query: 2956 LEGGAGNDVL-------KVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ 3114
++GG GND + + ++ + GG GDDTLYG D + GDG DT+
Sbjct: 343 IDGGEGNDTIYGDSGDDTIRGGIGNDGIYGGAGDDTLYGGDGKDK--ISGGDGDDTLYGD 400
Query: 3115 GGTDKLVFGEG 3147
G D++ G+G
Sbjct: 401 DGNDQMNGGDG 411
>gi|4104351|gb|AAD02005.1| (AF035193) S-layer-RTX protein
[Campylobacter rectus]
Length = 1123
Score = 95.2 bits (233), Expect = 4e-18
Identities = 160/584 (27%), Positives = 234/584 (39%), Gaps = 46/584 (7%)
Frame = +1
Query: 2950 NRLEG-GAGNDVLKVSYWSADNVLIGGTG--DDTLYGSAFADTYLFNQGDGHDTIIEQGG 3120
NR EG +++KV + + T DD Y + + G D I GG
Sbjct: 472 NRYEGLNDKGELIKVDIEKSIKTVFAATEPTDDADYIQGTQEADIIRAKGGDDVIYGNGG 531
Query: 3121 TDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFAD 3300
D++ EG D+ EG D + G G D+I + N T + ++I D
Sbjct: 532 DDEIYGDEG---NDIIHGNEGADKLFG-GAGDDAIYGGE---GNDTIEGNEGKDKIYGND 584
Query: 3301 GTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDV 3480
G+DT+KG +G DI + + G GDD+
Sbjct: 585 --------------------GDDTIKGGEGDDILKGEGGNDTIYGEGGKDNIFGNEGDDI 624
Query: 3481 LKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGD-------GHDTIIEQGGTDKLVFG 3639
LK D+ + GG G DT+ G A DT N GD G+D I G D L G
Sbjct: 625 LKGG--GDDDKIYGGEGKDTIDGEAGNDTLYGNDGDDTIDGGEGNDEIYGHKGKDTLKGG 682
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSA--DIEQIVFADGTLWT 3813
EG D ++ E D +LD G G D++ L+D T A + E + G
Sbjct: 683 EG----DDKIYGELSDTLLDGGEGVDTLILEDKEIDFNTLQADAIKNFEILDLGSGNSNA 738
Query: 3814 PEXXXXXXXXXXXXXXN-DTLKGWQGKD-----IXXXXXXXXXXXXXXXSNRLEG--GAG 3969
N DT+ G D + NR EG G
Sbjct: 739 ATLRNLSPQNISKLTSNKDTILKINGDDKDIAVLSGFTASADTNGLDANYNRYEGLNDKG 798
Query: 3970 DDV-------LKVSYWS---ADNV-LIGGT----------GDDTLYGSAFADTYLFNKGD 4086
+ V +K ++ S DN I GT GDD +YG+ DT N D
Sbjct: 799 ELVKVDIKKSIKTAFLSDQPTDNADYIQGTQGADIIRAKGGDDIVYGNDGDDTIYGN--D 856
Query: 4087 GHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHS 4266
G+D + G DKL G DV EG D + G+D++ D +
Sbjct: 857 GNDALYGGKGEDKLYGGAD---NDVIYGDEGDDTIYG-NEGNDTLYGGDGDDEIYGGEGN 912
Query: 4267 ADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSN 4446
+IE + T++ E G+D + G ++
Sbjct: 913 DEIEGGA-GNNTIYGNE-------------GDDNIYGGGDDDTIDGGDGNDFLYGDNGND 958
Query: 4447 RLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKL 4626
+EGG+G+D +K SY D+ + GG GDD +YG DT L + G+G+D++ D
Sbjct: 959 TIEGGSGNDTIKGSY--GDDHIEGGEGDDKIYGE-LNDT-LLDGGEGYDSLYFNEDVDFD 1014
Query: 4627 VFGAGLSRKEARFTR-----SGDDLSLLFN 4701
L++K + F + +GDD L N
Sbjct: 1015 AIRDTLNQKISNFEQLHLGYTGDDTVKLNN 1044
Score = 94.8 bits (232), Expect = 6e-18
Identities = 119/428 (27%), Positives = 173/428 (39%), Gaps = 25/428 (5%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
+R+ GG GND + D+ ++G GDDTLYG GDG+D I GG D
Sbjct: 314 DRITGGDGNDTIYGD--GGDDEIMGDAGDDTLYG-----------GDGNDIIFGNGGNDT 360
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGT--RNHSADIEQIVFADG 3303
+ G+G + ++ E D +LD G G D++ L G +N + E + G
Sbjct: 361 IYGGKG----NDKIYGELNDKLLDGGEGIDALLLTGSQIDLGAVQKNKIKNFEILDLNKG 416
Query: 3304 TL-------WTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXS----- 3447
+ TP+ DT+ G + S
Sbjct: 417 SYIGMVLKNLTPQNVLNITS------NKDTILKISGGNKDTVILDKKFTASADTSGLDAN 470
Query: 3448 -NRLEG-GAGDDVLKVSYWSADNVLSGGT--GDDTLYGSAFADTYLFNQGDGHDTIIEQG 3615
NR EG +++KV + + T DD Y + + G D I G
Sbjct: 471 YNRYEGLNDKGELIKVDIEKSIKTVFAATEPTDDADYIQGTQEADIIRAKGGDDVIYGNG 530
Query: 3616 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFA 3795
G D++ EG D+ EG D + G G D+I + N T + ++I
Sbjct: 531 GDDEIYGDEG---NDIIHGNEGADKLFG-GAGDDAIYGGE---GNDTIEGNEGKDKIYGN 583
Query: 3796 DGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDD 3975
DG +DT+KG +G DI + + G GDD
Sbjct: 584 DG--------------------DDTIKGGEGDDILKGEGGNDTIYGEGGKDNIFGNEGDD 623
Query: 3976 VLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGD-------GHDTIIEQGGTDKLVF 4134
+LK D+ + GG G DT+ G A DT N GD G+D I G D L
Sbjct: 624 ILKGG--GDDDKIYGGEGKDTIDGEAGNDTLYGNDGDDTIDGGEGNDEIYGHKGKDTLKG 681
Query: 4135 GEGILAADVRLLREGQDVVLDLGNGHDSIRLKD 4233
GEG D ++ E D +LD G G D++ L+D
Sbjct: 682 GEG----DDKIYGELSDTLLDGGEGVDTLILED 710
Score = 90.1 bits (220), Expect = 1e-16
Identities = 148/558 (26%), Positives = 214/558 (37%), Gaps = 39/558 (6%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
+ + G GND++ + AD L GG GDD +YG G+G+DTI G DK
Sbjct: 533 DEIYGDEGNDIIHGNE-GADK-LFGGAGDDAIYG-----------GEGNDTIEGNEGKDK 579
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTL 3309
+ +G D EG D++ G G+D+I + N N DI + D +
Sbjct: 580 IYGNDG---DDTIKGGEGDDILKGEG-GNDTI-YGEGGKDNIFGNEGDDILKGGGDDDKI 634
Query: 3310 WTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKV 3489
+ E GNDTL G G D + L+GG GDD K+
Sbjct: 635 YGGEGKDTIDGEA----GNDTLYGNDGDDTIDGGEGNDEIYGHKGKDTLKGGEGDD--KI 688
Query: 3490 SYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDG--HDTIIEQG-GTDKLVFGEGILAAD 3660
+D +L GG G DTL + Q D + I++ G G + +
Sbjct: 689 YGELSDTLLDGGEGVDTLILEDKEIDFNTLQADAIKNFEILDLGSGNSNAATLRNLSPQN 748
Query: 3661 VRLLREGQDVVLDL-GNGHDSIRLKDWLTSNGTRNHSA---------DIEQIVFAD---- 3798
+ L +D +L + G+ D L + S T A D ++V D
Sbjct: 749 ISKLTSNKDTILKINGDDKDIAVLSGFTASADTNGLDANYNRYEGLNDKGELVKVDIKKS 808
Query: 3799 -GTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDD 3975
T + + D ++ G DI ++ L GG G+D
Sbjct: 809 IKTAFLSDQPTDNADYIQGTQGADIIRAKGGDDIVYGNDGDDTIYGNDGNDALYGGKGED 868
Query: 3976 VLKVSYWSADN-VLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILA 4152
L Y ADN V+ G GDDT+YG+ DT GDG D I G D++ G G
Sbjct: 869 KL---YGGADNDVIYGDEGDDTIYGNEGNDTLY--GGDGDDEIYGGEGNDEIEGGAGNNT 923
Query: 4153 -----ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 4317
D + G D +D G+G+D ++ D T E
Sbjct: 924 IYGNEGDDNIYGGGDDDTIDGGDGND----------------------FLYGDNGNDTIE 961
Query: 4318 XXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVL----KV 4485
GNDT+KG L+GG G D L V
Sbjct: 962 GGS----------GNDTIKGSYGDDHIEGGEGDDKIYGELNDTLLDGGEGYDSLYFNEDV 1011
Query: 4486 SYWSADNVLS-----------GGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK 4623
+ + + L+ G TGDDT+ + +F D DTI++ G K
Sbjct: 1012 DFDAIRDTLNQKISNFEQLHLGYTGDDTVKLNNMTAADIFAMTDNKDTILKIKGDKK 1068
Score = 76.9 bits (186), Expect = 1e-12
Identities = 161/608 (26%), Positives = 252/608 (40%), Gaps = 99/608 (16%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTI------IEQG 3117
L GG GND++ + ++ + GG G+D +YG + L + G+G D + I+ G
Sbjct: 343 LYGGDGNDIIFGN--GGNDTIYGGKGNDKIYGEL--NDKLLDGGEGIDALLLTGSQIDLG 398
Query: 3118 GTDK--------LVFGEG---------ILAADVRLLREGQDVVLDLGNGH-DSIRL-KDW 3240
K L +G + +V + +D +L + G+ D++ L K +
Sbjct: 399 AVQKNKIKNFEILDLNKGSYIGMVLKNLTPQNVLNITSNKDTILKISGGNKDTVILDKKF 458
Query: 3241 LTSNGTRNHSADIEQIVFAD--GTLWTPEXXXXXXXXXXXXPGNDT---LKGWQGKDIXX 3405
S T A+ + + G L + D ++G Q DI
Sbjct: 459 TASADTSGLDANYNRYEGLNDKGELIKVDIEKSIKTVFAATEPTDDADYIQGTQEADIIR 518
Query: 3406 XXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQG 3585
+ + G G+D++ + AD L GG GDD +YG G
Sbjct: 519 AKGGDDVIYGNGGDDEIYGDEGNDIIHGNE-GADK-LFGGAGDDAIYG-----------G 565
Query: 3586 DGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNH 3765
+G+DTI G DK+ +G D EG D++ G G+D+I + N N
Sbjct: 566 EGNDTIEGNEGKDKIYGNDG---DDTIKGGEGDDILKGEG-GNDTI-YGEGGKDNIFGNE 620
Query: 3766 SADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXS 3945
DI + D ++ E NDTL G G D
Sbjct: 621 GDDILKGGGDDDKIYGGEGKDTIDGEAG----NDTLYGNDGDDTIDGGEGNDEIYGHKGK 676
Query: 3946 NRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLY------------GSAFADTYLFNKGDG 4089
+ L+GG GDD K+ +D +L GG G DTL A + + + G G
Sbjct: 677 DTLKGGEGDD--KIYGELSDTLLDGGEGVDTLILEDKEIDFNTLQADAIKNFEILDLGSG 734
Query: 4090 H---------------------DTIIEQGGTDK--LVFGEGILAADVR-----------L 4167
+ DTI++ G DK V +AD L
Sbjct: 735 NSNAATLRNLSPQNISKLTSNKDTILKINGDDKDIAVLSGFTASADTNGLDANYNRYEGL 794
Query: 4168 LREGQDVVLDLGNGHDSIRLKDWLTSNGTR---NHSADI------EQIVFA---DGTLWT 4311
+G+ V +D+ + L D T N ADI + IV+ D T++
Sbjct: 795 NDKGELVKVDIKKSIKTAFLSDQPTDNADYIQGTQGADIIRAKGGDDIVYGNDGDDTIYG 854
Query: 4312 PEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVL---- 4479
+ G D L G ++ L GG GDD +
Sbjct: 855 NDGNDALYGGK----GEDKLYGGADNDVIYGDEGDDTIYGNEGNDTLYGGDGDDEIYGGE 910
Query: 4480 ---KVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSR 4650
++ + +N + G GDD +YG DT + GDG+D + G D + G+G
Sbjct: 911 GNDEIEGGAGNNTIYGNEGDDNIYGGGDDDT--IDGGDGNDFLYGDNGNDTIEGGSGNDT 968
Query: 4651 KEARFTRSGDDLSLLFNGSEDQVTVAGWFNGS----GHQVESLVFQD 4779
+ + GDD G E + G N + G +SL F +
Sbjct: 969 IKGSY---GDD---HIEGGEGDDKIYGELNDTLLDGGEGYDSLYFNE 1009
Score = 71.8 bits (173), Expect = 5e-11
Identities = 121/447 (27%), Positives = 177/447 (39%), Gaps = 62/447 (13%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ------- 3114
++GG GND ++ + L GG GDD +YG +DT L + G+G DT+I +
Sbjct: 661 IDGGEGND--EIYGHKGKDTLKGGEGDDKIYGE-LSDT-LLDGGEGVDTLILEDKEIDFN 716
Query: 3115 ----------------GGTDKLVFGEGILAADVRLLREGQDVVLDL-GNGHDSIRLKDWL 3243
G + ++ L +D +L + G+ D L +
Sbjct: 717 TLQADAIKNFEILDLGSGNSNAATLRNLSPQNISKLTSNKDTILKINGDDKDIAVLSGFT 776
Query: 3244 TSNGTRNHSA---------DIEQIVFAD-----GTLWTPEXXXXXXXXXXXXPGNDTLKG 3381
S T A D ++V D T + + G D ++
Sbjct: 777 ASADTNGLDANYNRYEGLNDKGELVKVDIKKSIKTAFLSDQPTDNADYIQGTQGADIIRA 836
Query: 3382 WQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN-VLSGGTGDDTLYGSAF 3558
G DI ++ L GG G+D L Y ADN V+ G GDDT+YG+
Sbjct: 837 KGGDDIVYGNDGDDTIYGNDGNDALYGGKGEDKL---YGGADNDVIYGDEGDDTIYGNEG 893
Query: 3559 ADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA-----ADVRLLREGQDVVLDLGNGHDSI 3723
DT GDG D I G D++ G G D + G D +D G+G+D
Sbjct: 894 NDTLY--GGDGDDEIYGGEGNDEIEGGAGNNTIYGNEGDDNIYGGGDDDTIDGGDGND-- 949
Query: 3724 RLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXX 3903
++ D T E NDT+KG G D
Sbjct: 950 --------------------FLYGDNGNDTIEGGSG----------NDTIKGSYGDDHIE 979
Query: 3904 XXXXXXXXXXXXXSNRLEGGAGDDVL-----------------KVSYWSADNVLIGGTGD 4032
L+GG G D L K+S + + + +G TGD
Sbjct: 980 GGEGDDKIYGELNDTLLDGGEGYDSLYFNEDVDFDAIRDTLNQKISNF--EQLHLGYTGD 1037
Query: 4033 DTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGH 4212
DT+ + +F D DTI++ G K G L+ V D G +
Sbjct: 1038 DTVKLNNMTAADIFAMTDNKDTILKIKGDKKDSVG----------LKGFTKVSNDPGVEN 1087
Query: 4213 DSIRLKDWLT-SNGTRNHSADIEQIVFAD 4296
R + T ++GT DIE V D
Sbjct: 1088 GYTRYESTYTDTSGTHTIKVDIENPVHVD 1116
Score = 69.9 bits (168), Expect = 2e-10
Identities = 106/427 (24%), Positives = 157/427 (35%), Gaps = 26/427 (6%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G D ++G KD + + GG G D + +GG G+DT
Sbjct: 276 GTDHIRGTDKKDFIDAKGGNDFVDGLGGDDEIYGGEGKDRI-----------TGGDGNDT 324
Query: 3541 LYGSAFADTYLFNQ-------GDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLD 3699
+YG D + + GDG+D I GG D + G+G + ++ E D +LD
Sbjct: 325 IYGDGGDDEIMGDAGDDTLYGGDGNDIIFGNGGNDTIYGGKG----NDKIYGELNDKLLD 380
Query: 3700 LGNGHDSIRLKDWLTSNGT--RNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXN-DT 3870
G G D++ L G +N + E + G+ N DT
Sbjct: 381 GGEGIDALLLTGSQIDLGAVQKNKIKNFEILDLNKGSYIGMVLKNLTPQNVLNITSNKDT 440
Query: 3871 LKGWQGKDIXXXXXXXXXXXXXXXS------NRLEG-GAGDDVLKVSYWSADNVLIGGT- 4026
+ G + S NR EG +++KV + + T
Sbjct: 441 ILKISGGNKDTVILDKKFTASADTSGLDANYNRYEGLNDKGELIKVDIEKSIKTVFAATE 500
Query: 4027 -GDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLG 4203
DD Y + + G D I GG D++ EG D+ EG D + G
Sbjct: 501 PTDDADYIQGTQEADIIRAKGGDDVIYGNGGDDEIYGDEG---NDIIHGNEGADKLFG-G 556
Query: 4204 NGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQ 4383
G D+I + N T + ++I D G+DT+KG +
Sbjct: 557 AGDDAIYGGE---GNDTIEGNEGKDKIYGND--------------------GDDTIKGGE 593
Query: 4384 XXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT 4563
+ + G GDD+LK D+ + GG G DT+ G A DT
Sbjct: 594 GDDILKGEGGNDTIYGEGGKDNIFGNEGDDILKGG--GDDDKIYGGEGKDTIDGEAGNDT 651
Query: 4564 YLFNKGD-------GHDTIIEQGGTDKLVFGAG 4641
N GD G+D I G D L G G
Sbjct: 652 LYGNDGDDTIDGGEGNDEIYGHKGKDTLKGGEG 684
Score = 68.7 bits (165), Expect = 4e-10
Identities = 105/441 (23%), Positives = 168/441 (37%), Gaps = 22/441 (4%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G+D + G +GKD R+ GG G+D + D+ + G GDDT
Sbjct: 303 GDDEIYGGEGKD------------------RITGGDGNDTIYGD--GGDDEIMGDAGDDT 342
Query: 3541 LYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDS 3720
LYG GDG+D I GG D + G+G + ++ E D +LD G G D+
Sbjct: 343 LYG-----------GDGNDIIFGNGGNDTIYGGKG----NDKIYGELNDKLLDGGEGIDA 387
Query: 3721 IRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIX 3900
+ L G++ +++ + +K ++ D+
Sbjct: 388 LLL------TGSQIDLGAVQK---------------------------NKIKNFEILDLN 414
Query: 3901 XXXXXXXXXXXXXXSNRLEGGAGDD-VLKVSYWSADNVLIGGTGDDTLYGSAFADTY--- 4068
N L + D +LK+S + D V++ + S Y
Sbjct: 415 KGSYIGMVLKNLTPQNVLNITSNKDTILKISGGNKDTVILDKKFTASADTSGLDANYNRY 474
Query: 4069 --LFNKGDGHDTIIEQG---------GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHD 4215
L +KG+ IE+ TD + +G AD+ + G DV+ GNG D
Sbjct: 475 EGLNDKGELIKVDIEKSIKTVFAATEPTDDADYIQGTQEADIIRAKGGDDVIY--GNGGD 532
Query: 4216 SIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXX 4395
D N AD D ++ E GNDT++G +
Sbjct: 533 DEIYGDEGNDIIHGNEGADKLFGGAGDDAIYGGE-------------GNDTIEGNEG--- 576
Query: 4396 XXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFN 4575
+++ G GDD +K D++L G G+DT+YG D N
Sbjct: 577 ---------------KDKIYGNDGDDTIKGG--EGDDILKGEGGNDTIYGEGGKDNIFGN 619
Query: 4576 KGDGHDTIIEQGGTDKLVFGA-------GLSRKEARFTRSGDD 4683
+G D I++ GG D ++G G + + + GDD
Sbjct: 620 EG---DDILKGGGDDDKIYGGEGKDTIDGEAGNDTLYGNDGDD 659
Score = 66.7 bits (160), Expect = 2e-09
Identities = 81/262 (30%), Positives = 111/262 (41%), Gaps = 14/262 (5%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADN-VLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT 3123
++ L GG G D L Y ADN V+ G GDDT+YG+ DT GDG D I G
Sbjct: 858 NDALYGGKGEDKL---YGGADNDVIYGDEGDDTIYGNEGNDT--LYGGDGDDEIYGGEGN 912
Query: 3124 DKLVFGEGILA-----ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQI 3288
D++ G G D + G D +D G+G+D
Sbjct: 913 DEIEGGAGNNTIYGNEGDDNIYGGGDDDTIDGGDGND----------------------F 950
Query: 3289 VFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGA 3468
++ D T E GNDT+KG G D +EGG
Sbjct: 951 LYGDNGNDTIEGGS----------GNDTIKGSYGDD------------------HIEGGE 982
Query: 3469 GDDVLKVSYWSADNVLSGGTGDDTLYGS------AFADTYLFNQGDGHDTIIEQGGT-DK 3627
GDD K+ D +L GG G D+LY + A DT NQ + + G T D
Sbjct: 983 GDD--KIYGELNDTLLDGGEGYDSLYFNEDVDFDAIRDT--LNQKISNFEQLHLGYTGDD 1038
Query: 3628 LVFGEGILAADVRLLREGQDVVLDL-GNGHDSIRLK 3732
V + AAD+ + + +D +L + G+ DS+ LK
Sbjct: 1039 TVKLNNMTAADIFAMTDNKDTILKIKGDKKDSVGLK 1074
Score = 37.5 bits (85), Expect = 0.98
Identities = 27/92 (29%), Positives = 46/92 (49%), Gaps = 7/92 (7%)
Frame = +1
Query: 4444 NRLEGGAGDDVLK-------VSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTII 4602
N++ G G D ++ + ++ + G GDD +YG D GDG+DTI
Sbjct: 269 NKIVGTDGTDHIRGTDKKDFIDAKGGNDFVDGLGGDDEIYGGEGKDR--ITGGDGNDTIY 326
Query: 4603 EQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
GG D+++ AG + + G+D+ + NG D +
Sbjct: 327 GDGGDDEIMGDAG---DDTLYGGDGNDI-IFGNGGNDTI 361
>gi|39732|emb|CAA32411| (X14199) cyaA [Bordetella pertussis]
Length = 218
Score = 91.7 bits (224), Expect = 5e-17
Identities = 55/129 (42%), Positives = 74/129 (56%), Gaps = 1/129 (0%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ-GGTDKL 4626
L GGAGDDVL S ++LSG G+D L+G DTYLF G GHDTI E GG D +
Sbjct: 66 LSGGAGDDVLLGDEGS--DLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTI 123
Query: 4627 VFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVE 4806
AG + F R G+DL + G++D +TV W+ + H+VE + + V A +E
Sbjct: 124 RINAGAD--QLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIE 181
Query: 4807 RLIAAMALSP 4836
+L+ AMA P
Sbjct: 182 KLVEAMAQYP 191
Score = 64.8 bits (155), Expect = 6e-09
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ-GGTDKL 3630
L GGAGDDVL S ++LSG G+D L+G DTYLF G GHDTI E GG D +
Sbjct: 66 LSGGAGDDVLLGDEGS--DLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTI 123
Query: 3631 VFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
G A + R+G D+ + + D++ + DW
Sbjct: 124 RINAG--ADQLWFARQGNDLEIRILGTDDALTVHDW 157
Score = 62.5 bits (149), Expect = 3e-08
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ-GGTDKL 4128
L GGAGDDVL S ++L G G+D L+G DTYLF G GHDTI E GG D +
Sbjct: 66 LSGGAGDDVLLGDEGS--DLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTI 123
Query: 4129 VFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 4236
G A + R+G D+ + + D++ + DW
Sbjct: 124 RINAG--ADQLWFARQGNDLEIRILGTDDALTVHDW 157
Score = 60.5 bits (144), Expect = 1e-07
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ-GGTDKL 3132
L GGAG+DVL S ++L G G+D L+G DTYLF G GHDTI E GG D +
Sbjct: 66 LSGGAGDDVLLGDEGS--DLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTI 123
Query: 3133 VFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3240
G A + R+G D+ + + D++ + DW
Sbjct: 124 RINAG--ADQLWFARQGNDLEIRILGTDDALTVHDW 157
>gi|790694 (L39096) mannuronan C-5-epimerase [Azotobacter vinelandii]
Length = 1839
Score = 85.0 bits (207), Expect = 5e-15
Identities = 162/608 (26%), Positives = 227/608 (36%), Gaps = 26/608 (4%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYG 3051
TLEG +RL+GGAGND+L GG G DTL G
Sbjct: 1226 TLEGTTGNDTLGGSDAHETLLGLDGDDRLDGGAGNDILD-----------GGVGRDTLTG 1274
Query: 3052 SAFADTYLFNQGDGHDTIIEQGGTDKLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIR 3228
A ADT+ F+ + TD + F D+ L LG+G+D
Sbjct: 1275 GAGADTFRFSAREDSYRTASTSFTDLITDFDPAQDRIDLSALG-----FTGLGDGYDGTL 1329
Query: 3229 LKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN-----DTLKGWQGK 3393
L S G+R + +E AD E N ++G G
Sbjct: 1330 LVT-TGSGGSRTYLKSLE----ADAEGRRFEIALDGDFVGLLDASNLIFERPAIEGDAGD 1384
Query: 3394 DIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYL 3573
+ ++ L+G GDD +L GG G D+L G A AD +
Sbjct: 1385 NALLGTSVAETLLGHAGNDTLDGAGGDD-----------ILVGGAGSDSLTGGAGADVFR 1433
Query: 3574 F----NQGDGHDTIIEQGGTDKLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
F + +DT QG D++ F G DV L LG+G++ L
Sbjct: 1434 FDALSDSQRNYDTGDNQG--DRITDFAVGEDKLDVSALG-----FTGLGDGYNG-TLVLV 1485
Query: 3739 LTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXX 3918
L S G R + E ADG + +G G +
Sbjct: 1486 LNSAGDRTYVKSYEN--GADG-------------YRFEFSLDGNYQGLLGNE-------D 1523
Query: 3919 XXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDT 4098
LEG AG+D L+ + +AD V+ GG+G DTL G A AD + F++
Sbjct: 1524 FIFATPSGQQLLEGTAGNDSLQGT--AADEVIHGGSGRDTLAGGAGADVFRFSE------ 1575
Query: 4099 IIEQGGTDKLVFGEGIL---AADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSA 4269
+ + TD + + I A++ R+ G LGNG+ L + S GTR +
Sbjct: 1576 LTDSYRTDSASYADLITDFDASEDRIDLSGLG-FSGLGNGYGG-TLALQVNSAGTRTYLK 1633
Query: 4270 DIEQ-------IVFADGTLW---TPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXX 4419
E + DG L GNDTL G
Sbjct: 1634 SYEANAAGERFELSLDGDLSGLDESHLVFDERVVLAGGDGNDTLSG-------------- 1679
Query: 4420 XXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTI 4599
+ L GGAG+D L S + +++L GG G DTL G + +D + F GD D+
Sbjct: 1680 ----GSAAEELLGGAGNDSL--SGGAGNDILDGGAGRDTLSGGSGSDIFRF--GDALDSF 1731
Query: 4600 IEQGGTDKLVFGAGLSRKEARFTRSGD--DLSLL 4695
GA ++ A FT D DLS L
Sbjct: 1732 RNYNS------GANVTDSIADFTHGADLIDLSAL 1759
Score = 82.3 bits (200), Expect = 3e-14
Identities = 120/412 (29%), Positives = 159/412 (38%), Gaps = 29/412 (7%)
Frame = +1
Query: 3370 TLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 3549
TL+G G D+ ++RL+GGAGDD L GG G DTL G
Sbjct: 385 TLEGTAGNDVLSGTGAHELILGLAGNDRLDGGAGDDTL-----------DGGAGRDTLTG 433
Query: 3550 SAFADTYLFN-QGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV--LDLGNGHDS 3720
A ADT+ F+ + D H TD F + I D R + LGNG+D
Sbjct: 434 GAGADTFRFSAREDSH-------RTDSASFTDLITDFDASQDRIDLSALGFTGLGNGYDG 486
Query: 3721 IRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXN-----DTLKGWQ 3885
L S GTR + E V A G + E N + G +
Sbjct: 487 -TLAVTTGSGGTRTYLKSYE--VDAQGRRF--EIALDGNFVGQFNDGNLLFDAAPVTGTE 541
Query: 3886 GKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADT 4065
G D ++ L GGAG+D +L+GG G DTL G A AD
Sbjct: 542 GNDNLSGTDAGETLLGYGGNDTLNGGAGND-----------ILVGGAGRDTLTGGAGADV 590
Query: 4066 YLF---NKGDGHDTIIEQGGTDKLVFGEGILAADVRLL--------REGQDVVLDLGNGH 4212
+ F + + T + G + F G DV L R G V+ L +
Sbjct: 591 FRFEALSDSQRNYTAGDNQGDYIIDFAVGEDRIDVSALGYTGLGNGRNGTLAVV-LNSAG 649
Query: 4213 DSIRLKDWLTSNGTRNHSADI----------EQIVFADGTLWTPEXXXXXXXXXXXXPGN 4362
D +K + T N + EQ VFA TP GN
Sbjct: 650 DRTYVKSYDTDANGYNFELSLAGNYQGLLGAEQFVFA-----TPP----EQATIEGTDGN 700
Query: 4363 DTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLY 4542
D+L+G + L GGAGDDVL + + L+GGTG DT
Sbjct: 701 DSLQG---------TGADELLLGLGGRDSLNGGAGDDVLDGG--AERDTLTGGTGADTFL 749
Query: 4543 GSAFADTYLFNKGDGHDTIIE 4605
SA D+Y + D I +
Sbjct: 750 FSARTDSYRTDSASFTDLITD 770
Score = 79.2 bits (192), Expect = 3e-13
Identities = 167/647 (25%), Positives = 223/647 (33%), Gaps = 35/647 (5%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYG 3051
TLEG A ++RL+GGAG+D L GG G DTL G
Sbjct: 385 TLEGTAGNDVLSGTGAHELILGLAGNDRLDGGAGDDTLD-----------GGAGRDTLTG 433
Query: 3052 SAFADTYLFN-QGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV--LDLGNGHDS 3222
A ADT+ F+ + D H TD F + I D R + LGNG+D
Sbjct: 434 GAGADTFRFSAREDSH-------RTDSASFTDLITDFDASQDRIDLSALGFTGLGNGYDG 486
Query: 3223 IRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN-----DTLKGWQ 3387
L S GTR + E V A G + E GN + G +
Sbjct: 487 -TLAVTTGSGGTRTYLKSYE--VDAQGRRF--EIALDGNFVGQFNDGNLLFDAAPVTGTE 541
Query: 3388 GKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT 3567
G D ++ L GGAG+D +L GG G DTL G A AD
Sbjct: 542 GNDNLSGTDAGETLLGYGGNDTLNGGAGND-----------ILVGGAGRDTLTGGAGADV 590
Query: 3568 YLF---NQGDGHDTIIEQGGTDKLVFGEGILAADVRLL--------REGQDVVLDLGNGH 3714
+ F + + T + G + F G DV L R G V+ L +
Sbjct: 591 FRFEALSDSQRNYTAGDNQGDYIIDFAVGEDRIDVSALGYTGLGNGRNGTLAVV-LNSAG 649
Query: 3715 DSIRLKDWLTSNGTRNHSADI----------EQIVFADGTLWTPEXXXXXXXXXXXXXXN 3864
D +K + T N + EQ VFA PE
Sbjct: 650 DRTYVKSYDTDANGYNFELSLAGNYQGLLGAEQFVFAT----PPEQA------------- 692
Query: 3865 DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLY 4044
T++G G D + L GGAGDDVL + + L GGTG DT
Sbjct: 693 -TIEGTDGNDSLQGTGADELLLGLGGRDSLNGGAGDDVLDGG--AERDTLTGGTGADTFL 749
Query: 4045 GSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIR 4224
SA D+Y + D I + + G+ + GNG+D
Sbjct: 750 FSARTDSYRTDSASFTDLITDFDPAQDRIDLSGLGFS-------------GFGNGYDGTL 796
Query: 4225 LKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN-----DTLKGWQXX 4389
L + + GTR + +E ADG + E GN
Sbjct: 797 LLQ-VNAAGTRTYLKSLE--ADADGQRF--EIALDGDFSGQLDSGNVIFEAGVFNAKDFG 851
Query: 4390 XXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYL 4569
G G L + +G GD L YL
Sbjct: 852 ALGDGASDDRPAIQAAIDAAYAAGGGTVYLPAGEYRVSP--TGDPGDGCL--MLKDGVYL 907
Query: 4570 FNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSG-DDLSLLFNGSEDQVTVAGWFNGS 4746
G G I G+D+ + G S + G DL+L N V GWFNG
Sbjct: 908 VGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMSDLTLDGNRDNTSGKVDGWFNG- 966
Query: 4747 GHQVESLVFQDGTVLSAEVERL 4812
+ QDG + +ER+
Sbjct: 967 -----YIPGQDGADRNVTLERV 983
Score = 71.0 bits (171), Expect = 8e-11
Identities = 118/461 (25%), Positives = 171/461 (36%), Gaps = 12/461 (2%)
Frame = +1
Query: 3370 TLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 3549
TL+G G D +RL+GGAG+D+L GG G DTL G
Sbjct: 1226 TLEGTTGNDTLGGSDAHETLLGLDGDDRLDGGAGNDIL-----------DGGVGRDTLTG 1274
Query: 3550 SAFADTYLFNQGDGHDTIIEQGGTDKLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIR 3726
A ADT+ F+ + TD + F D+ L LG+G+D
Sbjct: 1275 GAGADTFRFSAREDSYRTASTSFTDLITDFDPAQDRIDLSALG-----FTGLGDGYDGTL 1329
Query: 3727 LKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXN-----DTLKGWQGK 3891
L S G+R + +E AD E N ++G G
Sbjct: 1330 LVT-TGSGGSRTYLKSLE----ADAEGRRFEIALDGDFVGLLDASNLIFERPAIEGDAGD 1384
Query: 3892 DIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYL 4071
+ ++ L+G GDD +L+GG G D+L G A AD +
Sbjct: 1385 NALLGTSVAETLLGHAGNDTLDGAGGDD-----------ILVGGAGSDSLTGGAGADVFR 1433
Query: 4072 F----NKGDGHDTIIEQGGTDKLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 4236
F + +DT QG D++ F G DV L LG+G++ L
Sbjct: 1434 FDALSDSQRNYDTGDNQG--DRITDFAVGEDKLDVSALG-----FTGLGDGYNG-TLVLV 1485
Query: 4237 LTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXX 4416
L S G R + E ADG GN+
Sbjct: 1486 LNSAGDRTYVKSYEN--GADGY----RFEFSLDGNYQGLLGNEDF--------------- 1524
Query: 4417 XXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDT 4596
LEG AG+D L+ + +AD V+ GG+G DTL G A AD + F++
Sbjct: 1525 -IFATPSGQQLLEGTAGNDSLQGT--AADEVIHGGSGRDTLAGGAGADVFRFSE------ 1575
Query: 4597 IIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG-WFNGSGH 4752
+ + TD + DL F+ SED++ ++G F+G G+
Sbjct: 1576 LTDSYRTDSASYA---------------DLITDFDASEDRIDLSGLGFSGLGN 1613
Score = 68.7 bits (165), Expect = 4e-10
Identities = 122/441 (27%), Positives = 173/441 (38%), Gaps = 14/441 (3%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFN----QGDGHDTIIEQGGT 3123
L G AGND L + D++L+GG G D+L G A AD + F+ +DT QG
Sbjct: 1396 LLGHAGNDTLDGA--GGDDILVGGAGSDSLTGGAGADVFRFDALSDSQRNYDTGDNQG-- 1451
Query: 3124 DKLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFAD 3300
D++ F G DV L LG+G++ L L S G R + E AD
Sbjct: 1452 DRITDFAVGEDKLDVSALG-----FTGLGDGYNGT-LVLVLNSAGDRTYVKSYEN--GAD 1503
Query: 3301 GTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDV 3480
G + GN +G G + LEG AG+D
Sbjct: 1504 GYRFE-----------FSLDGN--YQGLLGNE-------DFIFATPSGQQLLEGTAGNDS 1543
Query: 3481 LKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL--- 3651
L+ + +AD V+ GG+G DTL G A AD + F++ + + TD + + I
Sbjct: 1544 LQGT--AADEVIHGGSGRDTLAGGAGADVFRFSE------LTDSYRTDSASYADLITDFD 1595
Query: 3652 AADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADG-TLWTPEXXX 3828
A++ R+ G LGNG+ L + S GTR + E + L
Sbjct: 1596 ASEDRIDLSGLG-FSGLGNGYGG-TLALQVNSAGTRTYLKSYEANAAGERFELSLDGDLS 1653
Query: 3829 XXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 4008
L G G D ++ L GGAG+D+L
Sbjct: 1654 GLDESHLVFDERVVLAGGDGNDTLSGGSAAEELLGGAGNDSLSGGAGNDILD-------- 1705
Query: 4009 VLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGG----TDKLV-FGEGILAADVRLLR 4173
GG G DTL G + +D + F GD D+ TD + F G D+ L
Sbjct: 1706 ---GGAGRDTLSGGSGSDIFRF--GDALDSFRNYNSGANVTDSIADFTHGADLIDLSAL- 1759
Query: 4174 EGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 4278
G + D NG +I L D T ++ D E
Sbjct: 1760 -GYTGLGDGYNGTLAIVLNDAGTKTYLKDRGGDAE 1793
Score = 58.2 bits (138), Expect = 6e-07
Identities = 84/275 (30%), Positives = 119/275 (42%), Gaps = 18/275 (6%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
LEG AGND L+ + +AD V+ GG+G DTL G A AD + F++ + + TD
Sbjct: 1535 LEGTAGNDSLQGT--AADEVIHGGSGRDTLAGGAGADVFRFSE------LTDSYRTDSAS 1586
Query: 3136 FGEGIL---AADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQ------- 3285
+ + I A++ R+ G LGNG+ L + S GTR + E
Sbjct: 1587 YADLITDFDASEDRIDLSGLG-FSGLGNGYGG-TLALQVNSAGTRTYLKSYEANAAGERF 1644
Query: 3286 IVFADGTLW---TPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRL 3456
+ DG L GNDTL G + L
Sbjct: 1645 ELSLDGDLSGLDESHLVFDERVVLAGGDGNDTLSG------------------GSAAEEL 1686
Query: 3457 EGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGG----TD 3624
GGAG+D L S + +++L GG G DTL G + +D + F GD D+ TD
Sbjct: 1687 LGGAGNDSL--SGGAGNDILDGGAGRDTLSGGSGSDIFRF--GDALDSFRNYNSGANVTD 1742
Query: 3625 KLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 3780
+ F G D+ L G + D NG +I L D T ++ D E
Sbjct: 1743 SIADFTHGADLIDLSAL--GYTGLGDGYNGTLAIVLNDAGTKTYLKDRGGDAE 1793
>gi|4689002|emb|CAB41457.1| (Y08703) calcium binding protein
[Sinorhizobium meliloti]
Length = 219
Score = 79.2 bits (192), Expect = 3e-13
Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 9/232 (3%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
L GG DD L+GS F D F + G D + G D ++FG+ EG D++
Sbjct: 4 LEGGAYDDALFGSRFDD---FIRAHGGDDFVNGGNGDDIIFGD-----------EGDDLL 49
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
GNG+D++ GT ++ + GND L
Sbjct: 50 FG-GNGNDTV-----FGGEGT--------DVLHGEN-------------------GNDVL 76
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
G G D+ S+ L GG G+DVL + ++V+ GG+G D L G
Sbjct: 77 VGGSGDDLIYGDNGDDILLGGAGSDFLLGGRGNDVLLGG--AGNDVIDGGSGSDLLAGGQ 134
Query: 3556 FADTYLFNQGDGHDTIIE-QGGTDKLVFGEGILAADV--------RLLREGQDVVLDLGN 3708
+D ++F+ G G+D I++ G D L +GI DV R+ + G +VV+DLG+
Sbjct: 135 GSDIFVFDGGGGNDVILDFTPGEDVLQISKGINGLDVTAPEDLASRITQVGGNVVIDLGH 194
Query: 3709 G 3711
G
Sbjct: 195 G 195
Score = 76.5 bits (185), Expect = 2e-12
Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 9/232 (3%)
Frame = +1
Query: 3514 LSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3693
L GG DD L+GS F D F + G D + G D ++FG+ EG D++
Sbjct: 4 LEGGAYDDALFGSRFDD---FIRAHGGDDFVNGGNGDDIIFGD-----------EGDDLL 49
Query: 3694 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTL 3873
GNG+D++ GT ++ + ND L
Sbjct: 50 FG-GNGNDTV-----FGGEGT--------DVLHGEN-------------------GNDVL 76
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
G G D+ S+ L GG G+DVL + ++V+ GG+G D L G
Sbjct: 77 VGGSGDDLIYGDNGDDILLGGAGSDFLLGGRGNDVLLGG--AGNDVIDGGSGSDLLAGGQ 134
Query: 4054 FADTYLFNKGDGHDTIIE-QGGTDKLVFGEGILAADV--------RLLREGQDVVLDLGN 4206
+D ++F+ G G+D I++ G D L +GI DV R+ + G +VV+DLG+
Sbjct: 135 GSDIFVFDGGGGNDVILDFTPGEDVLQISKGINGLDVTAPEDLASRITQVGGNVVIDLGH 194
Query: 4207 G 4209
G
Sbjct: 195 G 195
Score = 60.1 bits (143), Expect = 2e-07
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 1/212 (0%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
L GG DD L+GS F D F + G D + G D ++FG+ EG D++
Sbjct: 4 LEGGAYDDALFGSRFDD---FIRAHGGDDFVNGGNGDDIIFGD-----------EGDDLL 49
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
GNG+D++ GT ++ + GND L
Sbjct: 50 FG-GNGNDTV-----FGGEGT--------DVLHGEN-------------------GNDVL 76
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
G S+ L GG G+DVL + ++V+ GG+G D L G
Sbjct: 77 VGGSGDDLIYGDNGDDILLGGAGSDFLLGGRGNDVLLGG--AGNDVIDGGSGSDLLAGGQ 134
Query: 4552 FADTYLFNKGDGHDTIIE-QGGTDKLVFGAGLS 4647
+D ++F+ G G+D I++ G D L G++
Sbjct: 135 GSDIFVFDGGGGNDVILDFTPGEDVLQISKGIN 167
Score = 56.6 bits (134), Expect = 2e-06
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 9/89 (10%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE-QGGT 3123
S+ L GG GNDVL + ++V+ GG+G D L G +D ++F+ G G+D I++ G
Sbjct: 100 SDFLLGGRGNDVLLGG--AGNDVIDGGSGSDLLAGGQGSDIFVFDGGGGNDVILDFTPGE 157
Query: 3124 DKLVFGEGILAADV--------RLLREGQDVVLDLGNG 3213
D L +GI DV R+ + G +VV+DLG+G
Sbjct: 158 DVLQISKGINGLDVTAPEDLASRITQVGGNVVIDLGHG 195
Score = 49.2 bits (115), Expect = 3e-04
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G+D + G G DI ++ + GG G DVL + ++VL GG+GDD
Sbjct: 27 GDDFVNGGNGDDIIFGDEGDDLLFGGNGNDTVFGGEGTDVLHGE--NGNDVLVGGSGDDL 84
Query: 3541 LYGSAFADTYLFNQGD-------GHDTIIEQGGTDKLVFGEGILAADVRLLREGQDV-VL 3696
+YG D L G G+D ++ G D + G G +D+ +G D+ V
Sbjct: 85 IYGDNGDDILLGGAGSDFLLGGRGNDVLLGGAGNDVIDGGSG---SDLLAGGQGSDIFVF 141
Query: 3697 DLGNGHDSI 3723
D G G+D I
Sbjct: 142 DGGGGNDVI 150
Score = 48.8 bits (114), Expect = 4e-04
Identities = 38/120 (31%), Positives = 58/120 (47%), Gaps = 8/120 (6%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
+D + G G DI ++ + GG G DVL + ++VL+GG+GDD +
Sbjct: 28 DDFVNGGNGDDIIFGDEGDDLLFGGNGNDTVFGGEGTDVLHGE--NGNDVLVGGSGDDLI 85
Query: 4042 YGSAFADTYLFNKGD-------GHDTIIEQGGTDKLVFGEGILAADVRLLREGQDV-VLD 4197
YG D L G G+D ++ G D + G G +D+ +G D+ V D
Sbjct: 86 YGDNGDDILLGGAGSDFLLGGRGNDVLLGGAGNDVIDGGSG---SDLLAGGQGSDIFVFD 142
Query: 4198 LGNGHDSI 4221
G G+D I
Sbjct: 143 GGGGNDVI 150
Score = 46.1 bits (107), Expect = 0.003
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWS-------ADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ 4608
LEGGA DD L S + D+ ++GG GDD ++G D LF G+G+DT+
Sbjct: 4 LEGGAYDDALFGSRFDDFIRAHGGDDFVNGGNGDDIIFGDE-GDDLLFG-GNGNDTVFGG 61
Query: 4609 GGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG 4731
GTD L G + + SGDD L++ + D + + G
Sbjct: 62 EGTDVL---HGENGNDVLVGGSGDD--LIYGDNGDDILLGG 97
Score = 45.7 bits (106), Expect = 0.003
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGD-------GHDTIIEQGG 3120
GG G DVL + ++VL+GG+GDD +YG D L G G+D ++ G
Sbjct: 60 GGEGTDVLHGE--NGNDVLVGGSGDDLIYGDNGDDILLGGAGSDFLLGGRGNDVLLGGAG 117
Query: 3121 TDKLVFGEGILAADVRLLREGQDV-VLDLGNGHDSI 3225
D + G G +D+ +G D+ V D G G+D I
Sbjct: 118 NDVIDGGSG---SDLLAGGQGSDIFVFDGGGGNDVI 150
Score = 41.8 bits (96), Expect = 0.050
Identities = 28/87 (32%), Positives = 45/87 (51%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV 4629
+ GG GDD++ D++L GG G+DT++G G+G D + + G D LV
Sbjct: 31 VNGGNGDDIIFGD--EGDDLLFGGNGNDTVFG-----------GEGTDVLHGENGNDVLV 77
Query: 4630 FGAGLSRKEARFTRSGDDLSLLFNGSE 4710
G+G + + +GDD+ L GS+
Sbjct: 78 GGSG---DDLIYGDNGDDILLGGAGSD 101
Score = 41.4 bits (95), Expect = 0.066
Identities = 39/109 (35%), Positives = 50/109 (45%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GG G DVL + ++VL GG+GDD +YG D L G G D ++ G D L+ G
Sbjct: 60 GGEGTDVLHGE--NGNDVLVGGSGDDLIYGDNGDDILL--GGAGSDFLLGGRGNDVLLGG 115
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDG 4782
AG + SG DL GS+ V F+G G L F G
Sbjct: 116 AG---NDVIDGGSGSDLLAGGQGSDIFV-----FDGGGGNDVILDFTPG 156
>gi|1890590|emb|CAB01938| (Z79692) ExpE1 [Sinorhizobium meliloti]
Length = 219
Score = 78.8 bits (191), Expect = 4e-13
Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 9/232 (3%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
L GG DD L+GS F D F + G D + G D ++FG+ +G D++
Sbjct: 4 LEGGAYDDALFGSRFDD---FIRAHGGDDFVNGGNGDDIIFGD-----------DGDDLL 49
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
GNG+D++ GT +++ + GND L
Sbjct: 50 FG-GNGNDTV-----FGGEGT--------DVLYGEN-------------------GNDIL 76
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
G G D+ S+ L GG G+DVL + ++V+ GG G D L G
Sbjct: 77 VGGSGDDLIYGDNGNDILLGGAGSDFLLGGRGNDVLLGG--AGNDVIDGGAGSDLLAGGQ 134
Query: 3556 FADTYLFNQGDGHDTIIE-QGGTDKLVFGEGILAADV--------RLLREGQDVVLDLGN 3708
+D ++F+ G G+D I++ G D L +GI DV R+ + G +VV+DLG+
Sbjct: 135 GSDIFVFDGGGGNDVILDFTPGEDVLQISKGINGLDVTAPEDLASRITQVGGNVVIDLGH 194
Query: 3709 G 3711
G
Sbjct: 195 G 195
Score = 76.1 bits (184), Expect = 2e-12
Identities = 67/232 (28%), Positives = 103/232 (43%), Gaps = 9/232 (3%)
Frame = +1
Query: 3514 LSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3693
L GG DD L+GS F D F + G D + G D ++FG+ +G D++
Sbjct: 4 LEGGAYDDALFGSRFDD---FIRAHGGDDFVNGGNGDDIIFGD-----------DGDDLL 49
Query: 3694 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTL 3873
GNG+D++ GT +++ + ND L
Sbjct: 50 FG-GNGNDTV-----FGGEGT--------DVLYGEN-------------------GNDIL 76
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
G G D+ S+ L GG G+DVL + ++V+ GG G D L G
Sbjct: 77 VGGSGDDLIYGDNGNDILLGGAGSDFLLGGRGNDVLLGG--AGNDVIDGGAGSDLLAGGQ 134
Query: 4054 FADTYLFNKGDGHDTIIE-QGGTDKLVFGEGILAADV--------RLLREGQDVVLDLGN 4206
+D ++F+ G G+D I++ G D L +GI DV R+ + G +VV+DLG+
Sbjct: 135 GSDIFVFDGGGGNDVILDFTPGEDVLQISKGINGLDVTAPEDLASRITQVGGNVVIDLGH 194
Query: 4207 G 4209
G
Sbjct: 195 G 195
Score = 59.7 bits (142), Expect = 2e-07
Identities = 55/212 (25%), Positives = 86/212 (39%), Gaps = 1/212 (0%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
L GG DD L+GS F D F + G D + G D ++FG+ +G D++
Sbjct: 4 LEGGAYDDALFGSRFDD---FIRAHGGDDFVNGGNGDDIIFGD-----------DGDDLL 49
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
GNG+D++ GT +++ + GND L
Sbjct: 50 FG-GNGNDTV-----FGGEGT--------DVLYGEN-------------------GNDIL 76
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
G S+ L GG G+DVL + ++V+ GG G D L G
Sbjct: 77 VGGSGDDLIYGDNGNDILLGGAGSDFLLGGRGNDVLLGG--AGNDVIDGGAGSDLLAGGQ 134
Query: 4552 FADTYLFNKGDGHDTIIE-QGGTDKLVFGAGLS 4647
+D ++F+ G G+D I++ G D L G++
Sbjct: 135 GSDIFVFDGGGGNDVILDFTPGEDVLQISKGIN 167
Score = 56.2 bits (133), Expect = 2e-06
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 9/89 (10%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE-QGGT 3123
S+ L GG GNDVL + ++V+ GG G D L G +D ++F+ G G+D I++ G
Sbjct: 100 SDFLLGGRGNDVLLGG--AGNDVIDGGAGSDLLAGGQGSDIFVFDGGGGNDVILDFTPGE 157
Query: 3124 DKLVFGEGILAADV--------RLLREGQDVVLDLGNG 3213
D L +GI DV R+ + G +VV+DLG+G
Sbjct: 158 DVLQISKGINGLDVTAPEDLASRITQVGGNVVIDLGHG 195
Score = 48.0 bits (112), Expect = 7e-04
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G+D + G G DI ++ + GG G DVL + +++L GG+GDD
Sbjct: 27 GDDFVNGGNGDDIIFGDDGDDLLFGGNGNDTVFGGEGTDVLYGE--NGNDILVGGSGDDL 84
Query: 3541 LYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG------EGILAADVRLLREGQDV-VLD 3699
+YG D L G G D ++ G D L+ G +G +D+ +G D+ V D
Sbjct: 85 IYGDNGNDILL--GGAGSDFLLGGRGNDVLLGGAGNDVIDGGAGSDLLAGGQGSDIFVFD 142
Query: 3700 LGNGHDSI 3723
G G+D I
Sbjct: 143 GGGGNDVI 150
Score = 47.6 bits (111), Expect = 9e-04
Identities = 38/120 (31%), Positives = 59/120 (48%), Gaps = 7/120 (5%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
+D + G G DI ++ + GG G DVL + +++L+GG+GDD +
Sbjct: 28 DDFVNGGNGDDIIFGDDGDDLLFGGNGNDTVFGGEGTDVLYGE--NGNDILVGGSGDDLI 85
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG------EGILAADVRLLREGQDV-VLDL 4200
YG D L G G D ++ G D L+ G +G +D+ +G D+ V D
Sbjct: 86 YGDNGNDILL--GGAGSDFLLGGRGNDVLLGGAGNDVIDGGAGSDLLAGGQGSDIFVFDG 143
Query: 4201 GNGHDSI 4221
G G+D I
Sbjct: 144 GGGNDVI 150
Score = 46.1 bits (107), Expect = 0.003
Identities = 37/94 (39%), Positives = 51/94 (53%), Gaps = 7/94 (7%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWS-------ADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ 4608
LEGGA DD L S + D+ ++GG GDD ++G D LF G+G+DT+
Sbjct: 4 LEGGAYDDALFGSRFDDFIRAHGGDDFVNGGNGDDIIFGDD-GDDLLFG-GNGNDTVFGG 61
Query: 4609 GGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG 4731
GTD L G + + SGDDL NG++ + AG
Sbjct: 62 EGTDVLY---GENGNDILVGGSGDDLIYGDNGNDILLGGAG 99
Score = 44.5 bits (103), Expect = 0.008
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GG G DVL + +++L+GG+GDD +YG D L G G D ++ G D L+ G
Sbjct: 60 GGEGTDVLYGE--NGNDILVGGSGDDLIYGDNGNDILL--GGAGSDFLLGGRGNDVLLGG 115
Query: 3142 ------EGILAADVRLLREGQDV-VLDLGNGHDSI 3225
+G +D+ +G D+ V D G G+D I
Sbjct: 116 AGNDVIDGGAGSDLLAGGQGSDIFVFDGGGGNDVI 150
Score = 40.2 bits (92), Expect = 0.15
Identities = 27/87 (31%), Positives = 45/87 (51%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV 4629
+ GG GDD++ D++L GG G+DT++G G+G D + + G D LV
Sbjct: 31 VNGGNGDDIIFGD--DGDDLLFGGNGNDTVFG-----------GEGTDVLYGENGNDILV 77
Query: 4630 FGAGLSRKEARFTRSGDDLSLLFNGSE 4710
G+G + + +G+D+ L GS+
Sbjct: 78 GGSG---DDLIYGDNGNDILLGGAGSD 101
>gi|790693 (L39096) mannuronan C-5-epimerase [Azotobacter vinelandii]
Length = 997
Score = 78.8 bits (191), Expect = 4e-13
Identities = 151/619 (24%), Positives = 214/619 (34%), Gaps = 12/619 (1%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYG 3051
TLEG A ++RL GGAGND+L GG G D L G
Sbjct: 385 TLEGTAGNDTLGGSDAHETLLGLDGNDRLNGGAGNDILD-----------GGAGRDNLTG 433
Query: 3052 SAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV--LDLGNGHDSI 3225
A AD LF D+ TD F + I D R + LG+G++
Sbjct: 434 GAGAD--LFRVSARTDSY----RTDSASFNDLITDFDASQDRIDLSALGFTGLGDGYNGT 487
Query: 3226 RLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN-----DTLKGWQG 3390
L ++++G+R + +E AD E GN ++G G
Sbjct: 488 LLLQ-VSADGSRTYLKSLE----ADAEGRRFEIALDGNFAGLLGAGNLLFERTAIEGDAG 542
Query: 3391 KDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY 3570
+ ++ L+GGAGDD +L GG G D+L G A AD +
Sbjct: 543 DNALLGTSAAETLLGHAGNDTLDGGAGDD-----------ILVGGAGRDSLTGGAGADVF 591
Query: 3571 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDV----VLDLGNGHDSIRLKDW 3738
F D + + + +G AD + + DV LG+G++ L
Sbjct: 592 RF------DALSDSQRNYDIGDNQGDRIADFAVGEDKLDVSALGFTGLGDGYNG-TLALV 644
Query: 3739 LTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXX 3918
L S G R + E ADG + G +
Sbjct: 645 LNSAGDRTYVKSYEN--GADGYRFE--------------------FSLDGNYLELLGNED 682
Query: 3919 XXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDT 4098
LEG AG+D L+ + +AD V+ GG G DTL G A AD + F++
Sbjct: 683 FIFATPSGQQLLEGSAGNDSLQGT--AADEVIHGGGGRDTLAGGAGADVFRFSE------ 734
Query: 4099 IIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 4278
L R D++ D D I L L +G N
Sbjct: 735 ----------------LTDSYRDSASYADLITDFDASEDRIDLSG-LGFSGLGNGYG--- 774
Query: 4279 QIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEG 4458
GTL N + ++ L G
Sbjct: 775 ------GTLALQVNSAGTRTYLKSFETNAAGERFEIALDGDLSALGGANLILDARTVLAG 828
Query: 4459 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGA 4638
G G+D L S SA L GG G+D+L G A D + + G G DT+ G+D FG
Sbjct: 829 GDGNDTLSGS--SAAEELLGGVGNDSLDGGAGND--ILDGGAGRDTLSGGSGSDIFRFGG 884
Query: 4639 GL-SRKEARFTRSGDDLSLLFNGSEDQVTVA 4728
L S + +G D F ED + ++
Sbjct: 885 ALDSFRNYASGTNGTDSITDFTPGEDLIDLS 915
Score = 68.3 bits (164), Expect = 5e-10
Identities = 117/441 (26%), Positives = 169/441 (37%), Gaps = 19/441 (4%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
L G AGND L + D++L+GG G D+L G A AD + F D + + +
Sbjct: 555 LLGHAGNDTLDGG--AGDDILVGGAGRDSLTGGAGADVFRF------DALSDSQRNYDIG 606
Query: 3136 FGEGILAADVRLLREGQDV----VLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADG 3303
+G AD + + DV LG+G++ L L S G R + E ADG
Sbjct: 607 DNQGDRIADFAVGEDKLDVSALGFTGLGDGYNGT-LALVLNSAGDRTYVKSYEN--GADG 663
Query: 3304 TLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL 3483
+ G + LEG AG+D L
Sbjct: 664 YRFEFSL--------------------DGNYLELLGNEDFIFATPSGQQLLEGSAGNDSL 703
Query: 3484 KVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL---A 3654
+ + +AD V+ GG G DTL G A AD + F++ + D + + I A
Sbjct: 704 QGT--AADEVIHGGGGRDTLAGGAGADVFRFSE-------LTDSYRDSASYADLITDFDA 754
Query: 3655 ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQI-------VFADGTLWT 3813
++ R+ G LGNG+ L + S GTR + E + DG L
Sbjct: 755 SEDRIDLSGLGFS-GLGNGYGGT-LALQVNSAGTRTYLKSFETNAAGERFEIALDGDL-- 810
Query: 3814 PEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3993
L G G D ++ L+GGAG+D+L
Sbjct: 811 ----SALGGANLILDARTVLAGGDGNDTLSGSSAAEELLGGVGNDSLDGGAGNDILD--- 863
Query: 3994 WSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIE----QGGTDKLV-FGEGILAAD 4158
GG G DTL G + +D + F G D+ GTD + F G D
Sbjct: 864 --------GGAGRDTLSGGSGSDIFRF--GGALDSFRNYASGTNGTDSITDFTPGEDLID 913
Query: 4159 VRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 4278
+ +L G + D NG +I L D T +N +D E
Sbjct: 914 LSVL--GYTGLGDGYNGTLAIVLNDAGTKTYLKNRESDAE 951
Score = 36.0 bits (81), Expect = 2.9
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE----Q 3114
++ L+GGAGND+L GG G DTL G + +D + F G D+
Sbjct: 850 NDSLDGGAGNDILD-----------GGAGRDTLSGGSGSDIFRF--GGALDSFRNYASGT 896
Query: 3115 GGTDKLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 3282
GTD + F G D+ +L G + D NG +I L D T +N +D E
Sbjct: 897 NGTDSITDFTPGEDLIDLSVL--GYTGLGDGYNGTLAIVLNDAGTKTYLKNRESDAE 951
Score = 35.2 bits (79), Expect = 5.0
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Frame = +1
Query: 4510 LSGGTGDDTLYGSAFADTYL-------FNKGDGHDTIIEQGGTDKLVFGAG--LSRKEAR 4662
L G G+DTL GS +T L N G G+D + G D L GAG L R AR
Sbjct: 386 LEGTAGNDTLGGSDAHETLLGLDGNDRLNGGAGNDILDGGAGRDNLTGGAGADLFRVSAR 445
Query: 4663 F------TRSGDDLSLLFNGSEDQVTVAG-WFNGSG 4749
+ S +DL F+ S+D++ ++ F G G
Sbjct: 446 TDSYRTDSASFNDLITDFDASQDRIDLSALGFTGLG 481
>gi|2120758|pir||I39739 mannuronan C5 epimerase - Azotobacter
vinelandii >gi|790689 (L39013) mannuronan C-5-epimerase
[Azotobacter vinelandii]
Length = 997
Score = 78.0 bits (189), Expect = 6e-13
Identities = 182/675 (26%), Positives = 252/675 (36%), Gaps = 38/675 (5%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYG 3051
TLEG ++RL GGAGND+L GG G D L G
Sbjct: 385 TLEGTTGNDTLTGSEAHETLLGLDGNDRLNGGAGNDILD-----------GGAGRDNLTG 433
Query: 3052 SAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV--LDLGNGHDSI 3225
A AD LF D+ TD F + I D R + LG+G++
Sbjct: 434 GAGAD--LFRVSARTDSY----RTDSASFNDLITDFDPAQDRIDLSALGFTGLGDGYNGT 487
Query: 3226 RLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN-----DTLKGWQG 3390
L L S GTR + E AD E GN ++G G
Sbjct: 488 -LAVVLNSAGTRTYLKSYE----ADAEGRRFEIALDGNFAGLLDDGNLIFERPVIEGDAG 542
Query: 3391 KDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY 3570
+ ++ L+G GDD+L GG G DTL G A AD +
Sbjct: 543 NNALLGTSAAETLLGHAGNDTLDGAGGDDILV-----------GGAGRDTLTGGAGADLF 591
Query: 3571 LFNQGDGHDTIIEQGGT--DKLV-FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWL 3741
F+ G D++V F G DV L LG+G++ L +
Sbjct: 592 RFDALSDSQRNYTTGDNQGDRIVDFSVGEDKLDVSALG-----FTGLGDGYNGT-LAVVV 645
Query: 3742 TSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXX 3921
S G R + E ADG + T G Q
Sbjct: 646 NSAGDRTYVKSYE--TDADGYRFEFSLEGNYQDLGSESFVFATPSGQQ------------ 691
Query: 3922 XXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTI 4101
LEG AG+D L+ + +AD ++ GG G DTL G A AD + F++ +
Sbjct: 692 ---------LLEGSAGNDSLQGT--AADEIVHGGAGRDTLSGGAGADVFRFSE------L 734
Query: 4102 IEQGGTDKLVFGEGIL---AADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSAD 4272
+ T F + I AD R+ G LG+G+D L + S GTR +
Sbjct: 735 TDSYRTASTSFADLITDFDLADDRIDLSGLG-FSGLGDGYDG-TLAVVVNSTGTRTYLKS 792
Query: 4273 IEQ-------IVFADGTLWT---PEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXX 4422
E + DG L GNDTL G
Sbjct: 793 YEANAAGERFEIALDGDLSAFTGANLILDERVVLEGSDGNDTLDG--------------- 837
Query: 4423 XXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTII 4602
+ L GGAG+D L + +++L GG G DTL G + +D +F D D+
Sbjct: 838 ---GSAAEELLGGAGNDSLDGG--AGNDILDGGAGRDTLSGGSGSD--IFRYDDALDSFR 890
Query: 4603 EQG----GTDKLV-FGAG---LSRKEARFTRSGD----DLSLLFNGSEDQVTVAG-WFNG 4743
G GTD + F G + +T GD L+++ NG + + +
Sbjct: 891 NYGTGVTGTDTITDFTPGEDLIDLSALGYTGLGDGYNGTLAVVLNGDGTRTYLKDRESDA 950
Query: 4744 SGHQVESLVFQDGTVLSAEVERLIAA--MALSPAVTTMQASVGETKESPRLVA 4896
G+Q E + DG + V+RL A + A TT VG T +LVA
Sbjct: 951 EGNQFE--IALDGDL----VDRLDAGDFIFAEAAATTAIEVVGGTPTEEQLVA 997
Score = 69.5 bits (167), Expect = 2e-10
Identities = 118/441 (26%), Positives = 174/441 (38%), Gaps = 21/441 (4%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT--DK 3129
L G AGND L + D++L+GG G DTL G A AD + F+ G D+
Sbjct: 555 LLGHAGNDTLDGA--GGDDILVGGAGRDTLTGGAGADLFRFDALSDSQRNYTTGDNQGDR 612
Query: 3130 LV-FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGT 3306
+V F G DV L LG+G++ L + S G R + E ADG
Sbjct: 613 IVDFSVGEDKLDVSALG-----FTGLGDGYNGT-LAVVVNSAGDRTYVKSYE--TDADGY 664
Query: 3307 LWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLK 3486
+ +L+G + LEG AG+D L+
Sbjct: 665 RF-----------------EFSLEG----NYQDLGSESFVFATPSGQQLLEGSAGNDSLQ 703
Query: 3487 VSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL---AA 3657
+ +AD ++ GG G DTL G A AD + F++ + + T F + I A
Sbjct: 704 GT--AADEIVHGGAGRDTLSGGAGADVFRFSE------LTDSYRTASTSFADLITDFDLA 755
Query: 3658 DVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQI-------VFADGTLWTP 3816
D R+ G LG+G+D L + S GTR + E + DG L
Sbjct: 756 DDRIDLSGLGFS-GLGDGYDGT-LAVVVNSTGTRTYLKSYEANAAGERFEIALDGDL--- 810
Query: 3817 EXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYW 3996
L+G G D ++ L+GGAG+D+L
Sbjct: 811 ---SAFTGANLILDERVVLEGSDGNDTLDGGSAAEELLGGAGNDSLDGGAGNDILD---- 863
Query: 3997 SADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAAD-VRLLR 4173
GG G DTL G + +D +F D D+ +G G+ D +
Sbjct: 864 -------GGAGRDTLSGGSGSD--IFRYDDALDSFRN--------YGTGVTGTDTITDFT 906
Query: 4174 EGQDVV-------LDLGNGHDSIRLKDWLTSNGTRNHSADIE 4278
G+D++ LG+G++ L L +GTR + D E
Sbjct: 907 PGEDLIDLSALGYTGLGDGYNG-TLAVVLNGDGTRTYLKDRE 947
Score = 60.5 bits (144), Expect = 1e-07
Identities = 78/275 (28%), Positives = 116/275 (41%), Gaps = 18/275 (6%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
LEG AGND L+ + +AD ++ GG G DTL G A AD + F++ + + T
Sbjct: 693 LEGSAGNDSLQGT--AADEIVHGGAGRDTLSGGAGADVFRFSE------LTDSYRTASTS 744
Query: 3136 FGEGIL---AADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQI------ 3288
F + I AD R+ G LG+G+D L + S GTR + E
Sbjct: 745 FADLITDFDLADDRIDLSGLGFS-GLGDGYDGT-LAVVVNSTGTRTYLKSYEANAAGERF 802
Query: 3289 -VFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGG 3465
+ DG L L+G G D ++ L+GG
Sbjct: 803 EIALDGDL------SAFTGANLILDERVVLEGSDGNDTLDGGSAAEELLGGAGNDSLDGG 856
Query: 3466 AGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEG 3645
AG+D+L GG G DTL G + +D +F D D+ +G G
Sbjct: 857 AGNDIL-----------DGGAGRDTLSGGSGSD--IFRYDDALDSFRN--------YGTG 895
Query: 3646 ILAAD-VRLLREGQDVV-------LDLGNGHDSIRLKDWLTSNGTRNHSADIE 3780
+ D + G+D++ LG+G++ L L +GTR + D E
Sbjct: 896 VTGTDTITDFTPGEDLIDLSALGYTGLGDGYNG-TLAVVLNGDGTRTYLKDRE 947
>gi|123196|sp|P15377|RT2A_ACTPL RTX-II TOXIN DETERMINANT A (APX-IIA)
(HEMOLYSIN IIA) (HLY-IIA) (CYTOLYSIN IIA) (CLY-IIA)
>gi|97130|pir||B33389 toxin II - Actinobacillus
pleuropneumoniae >gi|38941|emb|CAA43423| (X61111) ClyII-A
protein (cytolysin II) [Actinobacillus pleuropneumoniae]
>gi|141825 (M30602) hemolysin A [Actinobacillus
pleuropneumoniae 5]
Length = 956
Score = 74.9 bits (181), Expect = 5e-12
Identities = 75/282 (26%), Positives = 124/282 (43%), Gaps = 24/282 (8%)
Frame = +1
Query: 4015 IGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVL 4194
+G D+ GS+ T + + GDGHD + G +G ++ A + V
Sbjct: 614 LGAGNDNVFVGSS---TTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKR 666
Query: 4195 DLGNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGND 4365
+G+ H++I T+ G R + + T +T ND
Sbjct: 667 YVGDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFND 724
Query: 4366 TLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 4545
KG Q + L GGAGDDV+ + +N L GGTG+D + G
Sbjct: 725 IFKGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISG 782
Query: 4546 SAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTV 4725
D Y+ GDG+D+I + GG DKL F + ++ K+ F + L ++ N ++V +
Sbjct: 783 GKDNDIYVHKTGDGNDSITDSGGQDKLAF-SDVNLKDLTFKKVDSSLEII-NQKGEKVRI 840
Query: 4726 AGWF-------------NGSGHQVESLVFQDG-TVLSAEVERL-------IAAMALSPAV 4842
WF + ++E ++ + G + S +V++L I+A ALS V
Sbjct: 841 GNWFLEDDLASTVANYKATNDRKIEEIIGKGGERITSEQVDKLIKEGNNQISAEALSKVV 900
Query: 4843 TTMQAS 4860
S
Sbjct: 901 NDYNTS 906
Score = 73.7 bits (178), Expect = 1e-11
Identities = 66/265 (24%), Positives = 112/265 (41%), Gaps = 11/265 (4%)
Frame = +1
Query: 3523 GTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL 3702
G G+D ++ + T + + GDGHD + G +G ++ A + V +
Sbjct: 615 GAGNDNVFVGS--STTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKRYV 668
Query: 3703 GNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTL 3873
G+ H++I T+ G R + + T +T ND
Sbjct: 669 GDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFNDIF 726
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
KG Q D+ + L GGAGDDV+ + +N L+GGTG+D + G
Sbjct: 727 KGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISGGK 784
Query: 4054 FADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKD 4233
D Y+ GDG+D+I + GG DKL F + + D+ + + + + + +R+ +
Sbjct: 785 DNDIYVHKTGDGNDSITDSGGQDKLAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRIGN 842
Query: 4234 WL--------TSNGTRNHSADIEQIVFADGTLWTPE 4317
W +N + IE+I+ G T E
Sbjct: 843 WFLEDDLASTVANYKATNDRKIEEIIGKGGERITSE 878
Score = 71.4 bits (172), Expect = 6e-11
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 11/267 (4%)
Frame = +1
Query: 3019 IGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVL 3198
+G D+ GS+ T + + GDGHD + G +G ++ A + V
Sbjct: 614 LGAGNDNVFVGSS---TTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKR 666
Query: 3199 DLGNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGND 3369
+G+ H++I T+ G R + + T +T ND
Sbjct: 667 YVGDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFND 724
Query: 3370 TLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 3549
KG Q D+ + L GGAGDDV+ + +N L GGTG+D + G
Sbjct: 725 IFKGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISG 782
Query: 3550 SAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
D Y+ GDG+D+I + GG DKL F + + D+ + + + + + +R+
Sbjct: 783 GKDNDIYVHKTGDGNDSITDSGGQDKLAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRI 840
Query: 3730 KDWL--------TSNGTRNHSADIEQIVFADGTLWTPE 3819
+W +N + IE+I+ G T E
Sbjct: 841 GNWFLEDDLASTVANYKATNDRKIEEIIGKGGERITSE 878
Score = 59.3 bits (141), Expect = 3e-07
Identities = 38/124 (30%), Positives = 65/124 (51%), Gaps = 8/124 (6%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
+ L GGAG+DV+ + +N L+GGTG+D + G D Y+ GDG+D+I + GG DK
Sbjct: 751 DHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISGGKDNDIYVHKTGDGNDSITDSGGQDK 808
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWL--------TSNGTRNHSADIEQ 3285
L F + + D+ + + + + + +R+ +W +N + IE+
Sbjct: 809 LAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRIGNWFLEDDLASTVANYKATNDRKIEE 866
Query: 3286 IVFADGTLWTPE 3321
I+ G T E
Sbjct: 867 IIGKGGERITSE 878
>gi|232261|sp|Q00951|HLYA_ACTSU HEMOLYSIN (CYTOLYSIN II) (CLY-IIA)
(HLY-IIA) (CYTC) (APPA) >gi|141828 (M90440) cytolysin
[Actinobacillus suis]
Length = 956
Score = 74.9 bits (181), Expect = 5e-12
Identities = 75/282 (26%), Positives = 124/282 (43%), Gaps = 24/282 (8%)
Frame = +1
Query: 4015 IGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVL 4194
+G D+ GS+ T + + GDGHD + G +G ++ A + V
Sbjct: 614 LGAGNDNVFVGSS---TTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKR 666
Query: 4195 DLGNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGND 4365
+G+ H++I T+ G R + + T +T ND
Sbjct: 667 YVGDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFND 724
Query: 4366 TLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 4545
KG Q + L GGAGDDV+ + +N L GGTG+D + G
Sbjct: 725 IFKGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISG 782
Query: 4546 SAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTV 4725
D Y+ GDG+D+I + GG DKL F + ++ K+ F + L ++ N ++V +
Sbjct: 783 GKDNDIYVHKTGDGNDSITDSGGQDKLAF-SDVNLKDLTFKKVDSSLEII-NQKGEKVRI 840
Query: 4726 AGWF-------------NGSGHQVESLVFQDG-TVLSAEVERL-------IAAMALSPAV 4842
WF + ++E ++ + G + S +V++L I+A ALS V
Sbjct: 841 GNWFLEDDLASTVANYKATNDRKIEEIIGKGGERITSEQVDKLIKEGNNQISAEALSKVV 900
Query: 4843 TTMQAS 4860
S
Sbjct: 901 NDYNTS 906
Score = 73.7 bits (178), Expect = 1e-11
Identities = 66/265 (24%), Positives = 112/265 (41%), Gaps = 11/265 (4%)
Frame = +1
Query: 3523 GTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL 3702
G G+D ++ + T + + GDGHD + G +G ++ A + V +
Sbjct: 615 GAGNDNVFVGS--STTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKRYV 668
Query: 3703 GNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTL 3873
G+ H++I T+ G R + + T +T ND
Sbjct: 669 GDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFNDIF 726
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
KG Q D+ + L GGAGDDV+ + +N L+GGTG+D + G
Sbjct: 727 KGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISGGK 784
Query: 4054 FADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKD 4233
D Y+ GDG+D+I + GG DKL F + + D+ + + + + + +R+ +
Sbjct: 785 DNDIYVHKTGDGNDSITDSGGQDKLAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRIGN 842
Query: 4234 WL--------TSNGTRNHSADIEQIVFADGTLWTPE 4317
W +N + IE+I+ G T E
Sbjct: 843 WFLEDDLASTVANYKATNDRKIEEIIGKGGERITSE 878
Score = 71.4 bits (172), Expect = 6e-11
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 11/267 (4%)
Frame = +1
Query: 3019 IGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVL 3198
+G D+ GS+ T + + GDGHD + G +G ++ A + V
Sbjct: 614 LGAGNDNVFVGSS---TTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKR 666
Query: 3199 DLGNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGND 3369
+G+ H++I T+ G R + + T +T ND
Sbjct: 667 YVGDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFND 724
Query: 3370 TLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 3549
KG Q D+ + L GGAGDDV+ + +N L GGTG+D + G
Sbjct: 725 IFKGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISG 782
Query: 3550 SAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
D Y+ GDG+D+I + GG DKL F + + D+ + + + + + +R+
Sbjct: 783 GKDNDIYVHKTGDGNDSITDSGGQDKLAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRI 840
Query: 3730 KDWL--------TSNGTRNHSADIEQIVFADGTLWTPE 3819
+W +N + IE+I+ G T E
Sbjct: 841 GNWFLEDDLASTVANYKATNDRKIEEIIGKGGERITSE 878
Score = 59.3 bits (141), Expect = 3e-07
Identities = 38/124 (30%), Positives = 65/124 (51%), Gaps = 8/124 (6%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
+ L GGAG+DV+ + +N L+GGTG+D + G D Y+ GDG+D+I + GG DK
Sbjct: 751 DHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISGGKDNDIYVHKTGDGNDSITDSGGQDK 808
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWL--------TSNGTRNHSADIEQ 3285
L F + + D+ + + + + + +R+ +W +N + IE+
Sbjct: 809 LAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRIGNWFLEDDLASTVANYKATNDRKIEE 866
Query: 3286 IVFADGTLWTPE 3321
I+ G T E
Sbjct: 867 IIGKGGERITSE 878
>gi|285302|pir||A43834 toxin II - Actinobacillus suis
Length = 956
Score = 74.9 bits (181), Expect = 5e-12
Identities = 75/282 (26%), Positives = 124/282 (43%), Gaps = 24/282 (8%)
Frame = +1
Query: 4015 IGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVL 4194
+G D+ GS+ T + + GDGHD + G +G ++ A + V
Sbjct: 614 LGAGNDNVFVGSS---TTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKR 666
Query: 4195 DLGNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGND 4365
+G+ H++I T+ G R + + T +T ND
Sbjct: 667 YVGDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFND 724
Query: 4366 TLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 4545
KG Q + L GGAGDDV+ + +N L GGTG+D + G
Sbjct: 725 IFKGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISG 782
Query: 4546 SAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTV 4725
D Y+ GDG+D+I + GG DKL F + ++ K+ F + L ++ N ++V +
Sbjct: 783 GKDNDIYVHKTGDGNDSITDSGGQDKLAF-SDVNLKDLTFKKVDSSLEII-NQKGEKVRI 840
Query: 4726 AGWF-------------NGSGHQVESLVFQDG-TVLSAEVERL-------IAAMALSPAV 4842
WF + ++E ++ + G + S +V++L I+A ALS V
Sbjct: 841 GNWFLEDDLASTVANYKATNDRKIEEIIGKGGERITSEQVDKLIKEGNNQISAEALSKVV 900
Query: 4843 TTMQAS 4860
S
Sbjct: 901 NDYNTS 906
Score = 73.7 bits (178), Expect = 1e-11
Identities = 66/265 (24%), Positives = 112/265 (41%), Gaps = 11/265 (4%)
Frame = +1
Query: 3523 GTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL 3702
G G+D ++ + T + + GDGHD + G +G ++ A + V +
Sbjct: 615 GAGNDNVFVGS--STTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKRYV 668
Query: 3703 GNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTL 3873
G+ H++I T+ G R + + T +T ND
Sbjct: 669 GDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFNDIF 726
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
KG Q D+ + L GGAGDDV+ + +N L+GGTG+D + G
Sbjct: 727 KGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISGGK 784
Query: 4054 FADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKD 4233
D Y+ GDG+D+I + GG DKL F + + D+ + + + + + +R+ +
Sbjct: 785 DNDIYVHKTGDGNDSITDSGGQDKLAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRIGN 842
Query: 4234 WL--------TSNGTRNHSADIEQIVFADGTLWTPE 4317
W +N + IE+I+ G T E
Sbjct: 843 WFLEDDLASTVANYKATNDRKIEEIIGKGGERITSE 878
Score = 71.4 bits (172), Expect = 6e-11
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 11/267 (4%)
Frame = +1
Query: 3019 IGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVL 3198
+G D+ GS+ T + + GDGHD + G +G ++ A + V
Sbjct: 614 LGAGNDNVFVGSS---TTVIDGGDGHDRVHYSRGE----YGALVIDATAETEKGSYSVKR 666
Query: 3199 DLGNG---HDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGND 3369
+G+ H++I T+ G R + + T +T ND
Sbjct: 667 YVGDSKALHETIATHQ--TNVGNREEKIEYRREDDRFHTGYTVTDSLKSVEEIIGSQFND 724
Query: 3370 TLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 3549
KG Q D+ + L GGAGDDV+ + +N L GGTG+D + G
Sbjct: 725 IFKGSQFDDVFHGGNGVDTIDGNDGDDHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISG 782
Query: 3550 SAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
D Y+ GDG+D+I + GG DKL F + + D+ + + + + + +R+
Sbjct: 783 GKDNDIYVHKTGDGNDSITDSGGQDKLAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRI 840
Query: 3730 KDWL--------TSNGTRNHSADIEQIVFADGTLWTPE 3819
+W +N + IE+I+ G T E
Sbjct: 841 GNWFLEDDLASTVANYKATNDRKIEEIIGKGGERITSE 878
Score = 59.3 bits (141), Expect = 3e-07
Identities = 38/124 (30%), Positives = 65/124 (51%), Gaps = 8/124 (6%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
+ L GGAG+DV+ + +N L+GGTG+D + G D Y+ GDG+D+I + GG DK
Sbjct: 751 DHLFGGAGDDVIDGG--NGNNFLVGGTGNDIISGGKDNDIYVHKTGDGNDSITDSGGQDK 808
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWL--------TSNGTRNHSADIEQ 3285
L F + + D+ + + + + + +R+ +W +N + IE+
Sbjct: 809 LAFSD-VNLKDLTFKKVDSSLEI-INQKGEKVRIGNWFLEDDLASTVANYKATNDRKIEE 866
Query: 3286 IVFADGTLWTPE 3321
I+ G T E
Sbjct: 867 IIGKGGERITSE 878
>gi|540077 (U13767) HlyA [Anabaena sp.]
Length = 322
Score = 73.7 bits (178), Expect = 1e-11
Identities = 80/264 (30%), Positives = 109/264 (40%), Gaps = 15/264 (5%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
GNDTL G G D + L G AG+D+L + ++ L GG GDD
Sbjct: 40 GNDTLFGGSGNDSITGNSADNILSGGDNDDTLRGNAGNDILNGG--AGNDSLDGGLGDDV 97
Query: 3541 LYGSAFADTYLFNQGDGHDTIIEQ--GGTDKLVFGEGILAAD--VRLLREGQDVVLDLGN 3708
+ G A DTY + +DTIIE+ GGTD + + D L+ G + GN
Sbjct: 98 MTGGASNDTYFVD--SSNDTIIEEADGGTDTVRASITLTLGDHLENLILIGNSPIDGTGN 155
Query: 3709 GHDSIRLKDWLTSNGTRN---HSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKG 3879
L++ +T N N AD + I+ DG +DTL G
Sbjct: 156 A-----LRNNITGNVANNILSGGADNDTIISGDG--------------------DDTLYG 190
Query: 3880 WQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFA 4059
G D L GG G+D +L+GG G D L G
Sbjct: 191 DSGND------------------TLTGGNGND-----------ILVGGMGSDRLTGGNGK 221
Query: 4060 DTYLFNK--GDGHDTIIEQGGTDKLV------FGEGILA 4152
DT+ F+ DG DTI + D L+ FG G++A
Sbjct: 222 DTFAFSAPITDGIDTITDFNPLDDLLRVDAAGFGGGLVA 260
Score = 66.3 bits (159), Expect = 2e-09
Identities = 72/247 (29%), Positives = 109/247 (43%), Gaps = 4/247 (1%)
Frame = +1
Query: 3487 VSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVR 3666
VS+ + DN+LSGG DDTL G+A DT LF G G+D+I + L G+ D
Sbjct: 17 VSFATLDNILSGGDNDDTLRGNAGNDT-LFG-GSGNDSITGNSADNILSGGDN----DDT 70
Query: 3667 LLREGQDVVLDLGNGHDSI--RLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXX 3840
L + +L+ G G+DS+ L D + + G N + F D + T
Sbjct: 71 LRGNAGNDILNGGAGNDSLDGGLGDDVMTGGASNDT------YFVDSSNDTIIEEADGGT 124
Query: 3841 XXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN-VLI 4017
TL G +++ N + G +++L ADN +I
Sbjct: 125 DTVRASITLTL-GDHLENLILIGNSPIDGTGNALRNNITGNVANNILS---GGADNDTII 180
Query: 4018 GGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEG-ILAADVRLLREGQDVVL 4194
G GDDTLYG + DT G+G+D ++ G+D+L G G A + +G D +
Sbjct: 181 SGDGDDTLYGDSGNDT--LTGGNGNDILVGGMGSDRLTGGNGKDTFAFSAPITDGIDTIT 238
Query: 4195 DLGNGHDSIRL 4227
D D +R+
Sbjct: 239 DFNPLDDLLRV 249
Score = 65.2 bits (156), Expect = 5e-09
Identities = 95/334 (28%), Positives = 133/334 (39%), Gaps = 16/334 (4%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
NDTL G G D + L G AG+D+L + ++ L GG GDD +
Sbjct: 41 NDTLFGGSGNDSITGNSADNILSGGDNDDTLRGNAGNDILNGG--AGNDSLDGGLGDDVM 98
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQ--GGTDKLVFGEGILAAD--VRLLREGQDVVLDLGNG 4209
G A DTY + + DTIIE+ GGTD + + D L+ G + GN
Sbjct: 99 TGGASNDTYFVDSSN--DTIIEEADGGTDTVRASITLTLGDHLENLILIGNSPIDGTGNA 156
Query: 4210 HDSIRLKDWLTSNGTRN---HSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGW 4380
L++ +T N N AD + I+ DG +DTL G
Sbjct: 157 -----LRNNITGNVANNILSGGADNDTIISGDG--------------------DDTLYG- 190
Query: 4381 QXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFAD 4560
++ L GG G+D+L GG G D L G D
Sbjct: 191 -----------------DSGNDTLTGGNGNDILV-----------GGMGSDRLTGGNGKD 222
Query: 4561 TYLFNK--GDGHDTIIEQGGTDKLV------FGAGLSRKEARFTRSGDDLSLLFNGSEDQ 4716
T+ F+ DG DTI + D L+ FG GL RS L + D+
Sbjct: 223 TFAFSAPITDGIDTITDFNPLDDLLRVDAAGFGGGL--VAGTLLRSQFVLGTAAKTTSDR 280
Query: 4717 VTVAGWFNGSGHQVESLVFQ-DGTVLSAEVERLIAAMALSPAVTTMQASV 4863
+N S +L F DGT S++V+ IA ++ P + SV
Sbjct: 281 FI----YNQS---TGALFFDVDGTGSSSQVQ--IATLSNKPVINATNISV 321
Score = 64.0 bits (153), Expect = 1e-08
Identities = 77/261 (29%), Positives = 105/261 (39%), Gaps = 15/261 (5%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYG 3051
TL GG+ + L G AGND+L + ++ L GG GDD + G
Sbjct: 43 TLFGGSGNDSITGNSADNILSGGDNDDTLRGNAGNDILNGG--AGNDSLDGGLGDDVMTG 100
Query: 3052 SAFADTYLFNQGDGHDTIIEQ--GGTDKLVFGEGILAAD--VRLLREGQDVVLDLGNGHD 3219
A DTY + +DTIIE+ GGTD + + D L+ G + GN
Sbjct: 101 GASNDTYFVD--SSNDTIIEEADGGTDTVRASITLTLGDHLENLILIGNSPIDGTGNA-- 156
Query: 3220 SIRLKDWLTSNGTRN---HSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQG 3390
L++ +T N N AD + I+ D G+DTL G G
Sbjct: 157 ---LRNNITGNVANNILSGGADNDTIISGD--------------------GDDTLYGDSG 193
Query: 3391 KDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY 3570
D L GG G+D +L GG G D L G DT+
Sbjct: 194 ND------------------TLTGGNGND-----------ILVGGMGSDRLTGGNGKDTF 224
Query: 3571 LFNQ--GDGHDTIIEQGGTDKLV------FGEGILA 3654
F+ DG DTI + D L+ FG G++A
Sbjct: 225 AFSAPITDGIDTITDFNPLDDLLRVDAAGFGGGLVA 260
Score = 61.7 bits (147), Expect = 5e-08
Identities = 72/247 (29%), Positives = 112/247 (45%), Gaps = 16/247 (6%)
Frame = +1
Query: 2989 VSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVR 3168
VS+ + DN+L GG DDTL G+A DT LF G G+D+I + L G+ D
Sbjct: 17 VSFATLDNILSGGDNDDTLRGNAGNDT-LFG-GSGNDSITGNSADNILSGGDN----DDT 70
Query: 3169 LLREGQDVVLDLGNGHDSI--RLKDWLTSNGTRNHSADIEQ-----IVFADGTLWTPEXX 3327
L + +L+ G G+DS+ L D + + G N + ++ I ADG
Sbjct: 71 LRGNAGNDILNGGAGNDSLDGGLGDDVMTGGASNDTYFVDSSNDTIIEEADG-------- 122
Query: 3328 XXXXXXXXXXPGNDTLK-------GWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLK 3486
G DT++ G +++ N + G +++L
Sbjct: 123 -----------GTDTVRASITLTLGDHLENLILIGNSPIDGTGNALRNNITGNVANNILS 171
Query: 3487 VSYWSADN-VLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEG-ILAAD 3660
ADN + G GDDTLYG + DT G+G+D ++ G+D+L G G A
Sbjct: 172 ---GGADNDTIISGDGDDTLYGDSGNDT--LTGGNGNDILVGGMGSDRLTGGNGKDTFAF 226
Query: 3661 VRLLREGQDVVLDLGNGHDSIRL 3729
+ +G D + D D +R+
Sbjct: 227 SAPITDGIDTITDFNPLDDLLRV 249
Score = 59.7 bits (142), Expect = 2e-07
Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 11/219 (5%)
Frame = +1
Query: 3985 VSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVR 4164
VS+ + DN+L GG DDTL G+A DT LF G G+D+I + L G+ D
Sbjct: 17 VSFATLDNILSGGDNDDTLRGNAGNDT-LFG-GSGNDSITGNSADNILSGGDN----DDT 70
Query: 4165 LLREGQDVVLDLGNGHDSIR--LKDWLTSNGTRNHSADIEQ-----IVFADGTLWTPEXX 4323
L + +L+ G G+DS+ L D + + G N + ++ I ADG T
Sbjct: 71 LRGNAGNDILNGGAGNDSLDGGLGDDVMTGGASNDTYFVDSSNDTIIEEADGGTDTVRAS 130
Query: 4324 XXXXXXXXXXP----GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 4491
GN + G +N L GGA +D +
Sbjct: 131 ITLTLGDHLENLILIGNSPIDG-------TGNALRNNITGNVANNILSGGADNDTI---- 179
Query: 4492 WSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAG 4641
G GDDTLYG + DT G+G+D ++ G+D+L G G
Sbjct: 180 -------ISGDGDDTLYGDSGNDT--LTGGNGNDILVGGMGSDRLTGGNG 220
Score = 48.8 bits (114), Expect = 4e-04
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 4536
GNDTL G + L G AG+D+L + ++ L GG GDD
Sbjct: 40 GNDTLFGGSGNDSITGNSADNILSGGDNDDTLRGNAGNDILNGG--AGNDSLDGGLGDDV 97
Query: 4537 LYGSAFADTYLFNKGDGHDTIIEQ--GGTD 4620
+ G A DTY + +DTIIE+ GGTD
Sbjct: 98 MTGGASNDTYFVD--SSNDTIIEEADGGTD 125
Score = 40.6 bits (93), Expect = 0.11
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 16/53 (30%)
Frame = +1
Query: 4483 VSYWSADNVLSGGTGDDTLYGSAFADTY----------------LFNKGDGHDTIIEQGG 4614
VS+ + DN+LSGG DDTL G+A DT + + GD DT+ G
Sbjct: 17 VSFATLDNILSGGDNDDTLRGNAGNDTLFGGSGNDSITGNSADNILSGGDNDDTLRGNAG 76
Query: 4615 TDKLVFGAG 4641
D L GAG
Sbjct: 77 NDILNGGAG 85
>gi|123187|sp|P09983|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL
>gi|69558|pir||LEECA hemolysin A - Escherichia coli
>gi|146379 (M10133) chromosomal hemolysin A (hlyA)
[Escherichia coli]
Length = 1023
Score = 73.4 bits (177), Expect = 2e-11
Identities = 89/344 (25%), Positives = 123/344 (34%), Gaps = 7/344 (2%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
LIG T D +GS FAD +F+ DG D I G D+L +G+ +G D
Sbjct: 721 LIGTTRADKFFGSKFAD--IFHGADGDDHIEGNDGNDRL-YGD-----------KGNDT- 765
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
L GNG D Q+ DG GN+ L
Sbjct: 766 LSGGNGDD---------------------QLYGGDGN-----------DKLIGGAGNNYL 793
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
G G D N L GG G+D L S ++L GG G+D L G
Sbjct: 794 NGGDGDD------ELQVQGNSLAKNVLSGGKGNDKLYGS--EGADLLDGGEGNDLLKGGY 845
Query: 3556 FADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGH------- 3714
D Y + G GH I + GG D + I DV REG D+++ G+
Sbjct: 846 GNDIYRYLSGYGHHIIDDDGGKDDKLSLADIDFRDVAFRREGNDLIMYKAEGNVLSIGHK 905
Query: 3715 DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKD 3894
+ I K+W + IEQI DG + TP+ N+ G D
Sbjct: 906 NGITFKNWFEKESGDISNHQIEQIFDKDGRVITPD---SLKKALEYQQSNNKASYVYGND 962
Query: 3895 IXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYG 4047
+++ AG+ +K +A + + G D YG
Sbjct: 963 ALAYGSQGNLNPLINEISKIISAAGNFDVKEERAAASLLQLSGNASDFSYG 1013
Score = 67.9 bits (163), Expect = 7e-10
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 31/148 (20%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS-ADNVLSGGT--- 4524
GNDTL G +N L GG GDD L+V S A NVLSGG
Sbjct: 762 GNDTLSGGNGDDQLYGGDGNDKLIGGAGNNYLNGGDGDDELQVQGNSLAKNVLSGGKGND 821
Query: 4525 ---------------GDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEA 4659
G+D L G D Y + G GH I + GG D + A + ++
Sbjct: 822 KLYGSEGADLLDGGEGNDLLKGGYGNDIYRYLSGYGHHIIDDDGGKDDKLSLADIDFRDV 881
Query: 4660 RFTRSGDDL-------SLLFNGSEDQVTVAGWFNG-----SGHQVESLVFQDGTVLSAE 4800
F R G+DL ++L G ++ +T WF S HQ+E + +DG V++ +
Sbjct: 882 AFRREGNDLIMYKAEGNVLSIGHKNGITFKNWFEKESGDISNHQIEQIFDKDGRVITPD 940
Score = 67.1 bits (161), Expect = 1e-09
Identities = 76/268 (28%), Positives = 101/268 (37%), Gaps = 7/268 (2%)
Frame = +1
Query: 3514 LSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3693
L G T D +GS FAD +F+ DG D I G D+L +G+ +G D
Sbjct: 721 LIGTTRADKFFGSKFAD--IFHGADGDDHIEGNDGNDRL-YGD-----------KGNDT- 765
Query: 3694 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTL 3873
L GNG D Q+ DG N+ L
Sbjct: 766 LSGGNGDD---------------------QLYGGDGN-----------DKLIGGAGNNYL 793
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
G G D N L GG G+D L S ++L GG G+D L G
Sbjct: 794 NGGDGDD------ELQVQGNSLAKNVLSGGKGNDKLYGS--EGADLLDGGEGNDLLKGGY 845
Query: 4054 FADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGH------- 4212
D Y + G GH I + GG D + I DV REG D+++ G+
Sbjct: 846 GNDIYRYLSGYGHHIIDDDGGKDDKLSLADIDFRDVAFRREGNDLIMYKAEGNVLSIGHK 905
Query: 4213 DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 4317
+ I K+W + IEQI DG + TP+
Sbjct: 906 NGITFKNWFEKESGDISNHQIEQIFDKDGRVITPD 940
Score = 64.0 bits (153), Expect = 1e-08
Identities = 54/150 (36%), Positives = 70/150 (46%), Gaps = 26/150 (17%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWS-ADNVLIGGTGDDTLY 3048
TL GG +N L GG G+D L+V S A NVL GG G+D LY
Sbjct: 765 TLSGGNGDDQLYGGDGNDKLIGGAGNNYLNGGDGDDELQVQGNSLAKNVLSGGKGNDKLY 824
Query: 3049 GSAFA------------------DTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLL 3174
GS A D Y + G GH I + GG D + I DV
Sbjct: 825 GSEGADLLDGGEGNDLLKGGYGNDIYRYLSGYGHHIIDDDGGKDDKLSLADIDFRDVAFR 884
Query: 3175 REGQDVVLDLGNGH-------DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3321
REG D+++ G+ + I K+W + IEQI DG + TP+
Sbjct: 885 REGNDLIMYKAEGNVLSIGHKNGITFKNWFEKESGDISNHQIEQIFDKDGRVITPD 940
Score = 36.0 bits (81), Expect = 2.9
Identities = 19/47 (40%), Positives = 26/47 (54%)
Frame = +1
Query: 4501 DNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAG 4641
D+ + G G+D LYG DT + G+G D + G DKL+ GAG
Sbjct: 745 DDHIEGNDGNDRLYGDKGNDT--LSGGNGDDQLYGGDGNDKLIGGAG 789
>gi|6671152|gb|AAF23114.1| (AF188869) ApxIVA [Actinobacillus
pleuropneumoniae]
Length = 130
Score = 73.0 bits (176), Expect = 2e-11
Identities = 43/106 (40%), Positives = 62/106 (57%), Gaps = 7/106 (6%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGT---- 4617
++ GAG+D + Y D+ L GG G+D L GS ADTYLF+KG G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 4618 ---DKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESL 4767
D L F + E F+R +DL + SED+VTV W++ H++E++
Sbjct: 66 SDIDTLKF-TDIGLSELWFSRENNDLIIKSLLSEDKVTVQNWYSHQDHKIENI 117
Score = 60.1 bits (143), Expect = 2e-07
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT---- 3123
++ GAGND + Y D+ LIGG G+D L GS ADTYLF++G G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 3124 ---DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3240
D L F + I +++ RE D+++ D + +++W
Sbjct: 66 SDIDTLKFTD-IGLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 59.7 bits (142), Expect = 2e-07
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGT---- 4119
++ GAG+D + Y D+ LIGG G+D L GS ADTYLF+KG G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 4120 ---DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 4236
D L F + I +++ RE D+++ D + +++W
Sbjct: 66 SDIDTLKFTD-IGLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 55.8 bits (132), Expect = 3e-06
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT---- 3621
++ GAG+D + Y D+ L GG G+D L GS ADTYLF++G G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 3622 ---DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
D L F + I +++ RE D+++ D + +++W
Sbjct: 66 SDIDTLKFTD-IGLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
>gi|6671150|gb|AAF23113.1| (AF188868) ApxIVA [Actinobacillus
pleuropneumoniae]
Length = 130
Score = 73.0 bits (176), Expect = 2e-11
Identities = 43/106 (40%), Positives = 62/106 (57%), Gaps = 7/106 (6%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGT---- 4617
++ GAG+D + Y D+ L GG G+D L GS ADTYLF+KG G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 4618 ---DKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESL 4767
D L F + E F+R +DL + SED+VTV W++ H++E++
Sbjct: 66 SDIDTLKF-TDIGLSELWFSRENNDLIIKSLLSEDKVTVQNWYSHQDHKIENI 117
Score = 60.1 bits (143), Expect = 2e-07
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT---- 3123
++ GAGND + Y D+ LIGG G+D L GS ADTYLF++G G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 3124 ---DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3240
D L F + I +++ RE D+++ D + +++W
Sbjct: 66 SDIDTLKFTD-IGLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 59.7 bits (142), Expect = 2e-07
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGT---- 4119
++ GAG+D + Y D+ LIGG G+D L GS ADTYLF+KG G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 4120 ---DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 4236
D L F + I +++ RE D+++ D + +++W
Sbjct: 66 SDIDTLKFTD-IGLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 55.8 bits (132), Expect = 3e-06
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGT---- 3621
++ GAG+D + Y D+ L GG G+D L GS ADTYLF++G G D I E +
Sbjct: 8 IDAGAGNDTVNGGY--GDDTLIGGKGNDILKGSYGADTYLFSKGHGQDVIYEYSNSASST 65
Query: 3622 ---DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
D L F + I +++ RE D+++ D + +++W
Sbjct: 66 SDIDTLKFTD-IGLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
>gi|1652114|dbj|BAA17039| (D90902) iron-regulated protein
[Synechocystis sp.]
Length = 591
Score = 72.6 bits (175), Expect = 3e-11
Identities = 112/432 (25%), Positives = 172/432 (38%), Gaps = 60/432 (13%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF-NQGDGHDTIIEQGGTDKL 3132
+ G AGND+L D++L GGTG D ++G + DTY N GD GG D +
Sbjct: 46 INGKAGNDILVGL--GGDDILDGGTGADIMFGGSGDDTYYVDNTGDKVGEASAGGGMDSV 103
Query: 3133 VF--------GEGILAADVRLLREGQDVV----------LDLGNGHDSIRLKDWLTSNGT 3258
+ G L A L+ G + L L L N T
Sbjct: 104 ISSVDYSLNTGPFYLPAINGLVNNGAALATLGATKYAAYLFLSEPLTRPELTPTFIENLT 163
Query: 3259 RNHSA------DIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXX 3420
+A D++ I+ +G GNDT++G G D
Sbjct: 164 LTGTAIIGEGNDLDNIIDGNGE----------NNVLSGLGGNDTIRGLGGNDTISGGEGN 213
Query: 3421 XXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDT 3600
+ L G GDD ++ ++++ GG +D+LYG G+D+
Sbjct: 214 DLLNGNMGEDSLNGNVGDDTVRGG--QGNDIVRGGQDNDSLYGDL-----------GNDS 260
Query: 3601 IIEQGGTDKLVFGEGILAADVRLLREGQDV-VLDLGNGHDSIRLKDWLTSNGTRNHSADI 3777
+ G D L G+G D G D D G D + L +T G + + +
Sbjct: 261 VFGDLGNDTLYGGDGNDVLDGGTDPGGADTDTADYGTVQDPVVLPRSITLKGAGDLTLTV 320
Query: 3778 EQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXS---- 3945
E+ G+L N+T+ + G D+ S
Sbjct: 321 EKGPL--GSLGIDTLLNIEEVIADGSVDNNTI-DFSGADLGITINVDLGMQSILISGASS 377
Query: 3946 ----------NRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGD--- 4086
+ + G G+D++ +N+L GG GDD++ G DT + G+
Sbjct: 378 PQSLVKVVNFDNVIGTIGNDIIIGD--DQENILDGGKGDDSIVGFQKNDTLMGGHGNDTL 435
Query: 4087 ----GHDTIIEQGGTDKLVFGEGILAADVRLLREGQ-------------DVVLDLGNGHD 4215
G+D II D L G G D L++ Q DV+ D G D
Sbjct: 436 NGRAGNDLIIGGADKDILTGGMGNDLFDYTNLKDSQLGLSWFNVNLSKVDVITDFTRGED 495
Query: 4216 SIRLKDWLTSNG 4251
++ T+NG
Sbjct: 496 KFLVQSAPTNNG 507
Score = 70.6 bits (170), Expect = 1e-10
Identities = 107/429 (24%), Positives = 168/429 (38%), Gaps = 40/429 (9%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLF-NQGDGHDTIIEQGGTDKL 3630
+ G AG+D+L D++L GGTG D ++G + DTY N GD GG D +
Sbjct: 46 INGKAGNDILVGL--GGDDILDGGTGADIMFGGSGDDTYYVDNTGDKVGEASAGGGMDSV 103
Query: 3631 VF--------GEGILAADVRLLREGQDVV----------LDLGNGHDSIRLKDWLTSNGT 3756
+ G L A L+ G + L L L N T
Sbjct: 104 ISSVDYSLNTGPFYLPAINGLVNNGAALATLGATKYAAYLFLSEPLTRPELTPTFIENLT 163
Query: 3757 RNHSA------DIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXX 3918
+A D++ I+ +G NDT++G G D
Sbjct: 164 LTGTAIIGEGNDLDNIIDGNGE----------NNVLSGLGGNDTIRGLGGNDTISGGEGN 213
Query: 3919 XXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDT 4098
+ L G GDD ++ ++++ GG +D+LYG G+D+
Sbjct: 214 DLLNGNMGEDSLNGNVGDDTVRGG--QGNDIVRGGQDNDSLYGDL-----------GNDS 260
Query: 4099 IIEQGGTDKLVFGEGILAADVRLLREGQDV-VLDLGNGHDSIRLKDWLTSNGTRNHSADI 4275
+ G D L G+G D G D D G D + L +T G + + +
Sbjct: 261 VFGDLGNDTLYGGDGNDVLDGGTDPGGADTDTADYGTVQDPVVLPRSITLKGAGDLTLTV 320
Query: 4276 EQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLK--------------GWQXXXXXXXXXX 4413
E+ G+L N+T+ G Q
Sbjct: 321 EKGPL--GSLGIDTLLNIEEVIADGSVDNNTIDFSGADLGITINVDLGMQSILISGASSP 378
Query: 4414 XXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHD 4593
N + G G+D++ +N+L GG GDD++ G DT + G G+D
Sbjct: 379 QSLVKVVNFDNVI-GTIGNDIIIGD--DQENILDGGKGDDSIVGFQKNDTLM--GGHGND 433
Query: 4594 TIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFN 4740
T+ + G D ++ GA K+ G+DL N + Q+ ++ WFN
Sbjct: 434 TLNGRAGNDLIIGGAD---KDILTGGMGNDLFDYTNLKDSQLGLS-WFN 478
Score = 52.3 bits (123), Expect = 3e-05
Identities = 74/269 (27%), Positives = 118/269 (43%), Gaps = 58/269 (21%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLK-------VSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGD----- 3090
+N L G GND ++ +S +++L G G+D+L G+ DT QG+
Sbjct: 186 NNVLSGLGGNDTIRGLGGNDTISGGEGNDLLNGNMGEDSLNGNVGDDTVRGGQGNDIVRG 245
Query: 3091 -----------GHDTIIEQGGTDKLVFGEGILAADVRLLREGQDV-VLDLGNGHDSIRLK 3234
G+D++ G D L G+G D G D D G D + L
Sbjct: 246 GQDNDSLYGDLGNDSVFGDLGNDTLYGGDGNDVLDGGTDPGGADTDTADYGTVQDPVVLP 305
Query: 3235 DWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXX 3414
+T G + + +E+ G+L N+T+ + G D+
Sbjct: 306 RSITLKGAGDLTLTVEKGPL--GSLGIDTLLNIEEVIADGSVDNNTI-DFSGADLGITIN 362
Query: 3415 XXXXXXXXXXS--------------NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGS 3552
S + + G G+D++ +N+L GG GDD++ G
Sbjct: 363 VDLGMQSILISGASSPQSLVKVVNFDNVIGTIGNDIIIGD--DQENILDGGKGDDSIVGF 420
Query: 3553 AFADTYLFNQGD-------GHDTIIEQGGTDKLVFGEGILAADVRLLREGQ--------- 3684
DT + G+ G+D II D L G G D L++ Q
Sbjct: 421 QKNDTLMGGHGNDTLNGRAGNDLIIGGADKDILTGGMGNDLFDYTNLKDSQLGLSWFNVN 480
Query: 3685 ----DVVLDLGNGHDSIRLKDWLTSNG 3753
DV+ D G D ++ T+NG
Sbjct: 481 LSKVDVITDFTRGEDKFLVQSAPTNNG 507
>gi|6671132|gb|AAF23104.1| (AF188859) ApxIVA [Actinobacillus
pleuropneumoniae]
Length = 130
Score = 72.2 bits (174), Expect = 4e-11
Identities = 44/118 (37%), Positives = 71/118 (59%), Gaps = 8/118 (6%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK-- 4623
++ GAG+D V+ + D+ L GG G+DTL G ADTY+F+KG G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGMGNDTLKGGFGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 4624 -----LVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESL-VFQDGT 4785
L F ++ E F+R +DL + SED+VTV W++ H++E++ + + T
Sbjct: 66 RDIDTLKF-TDINLSELWFSRENNDLIIKSLLSEDKVTVQNWYSHQDHKIENIRLSNEQT 124
Query: 4786 VLSAEV 4803
++S +V
Sbjct: 125 LVSTQV 130
Score = 57.8 bits (137), Expect = 8e-07
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK-- 3129
++ GAGND V+ + D+ LIGG G+DTL G ADTY+F++G G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGMGNDTLKGGFGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 3130 -----LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3240
L F + I +++ RE D+++ D + +++W
Sbjct: 66 RDIDTLKFTD-INLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 57.4 bits (136), Expect = 1e-06
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK-- 4125
++ GAG+D V+ + D+ LIGG G+DTL G ADTY+F+KG G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGMGNDTLKGGFGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 4126 -----LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 4236
L F + I +++ RE D+++ D + +++W
Sbjct: 66 RDIDTLKFTD-INLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 53.5 bits (126), Expect = 2e-05
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK-- 3627
++ GAG+D V+ + D+ L GG G+DTL G ADTY+F++G G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGMGNDTLKGGFGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 3628 -----LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
L F + I +++ RE D+++ D + +++W
Sbjct: 66 RDIDTLKFTD-INLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
>gi|1710793|sp|P55128|RT11_ACTPL RTX-I TOXIN DETERMINANT A FROM
SEROTYPES 1/9 (APX-IA) (HEMOLYSIN IA) (HLY-IA) (CYTOLYSIN
IA) (CLY-IA) >gi|38950|emb|CAA37081| (X52899) hemolysin I
[Actinobacillus pleuropneumoniae]
>gi|505570|emb|CAA48586| (X68595) structural protein A
[Actinobacillus pleuropneumoniae]
Length = 1023
Score = 71.4 bits (172), Expect = 6e-11
Identities = 81/269 (30%), Positives = 118/269 (43%), Gaps = 17/269 (6%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
+IG D +GS F D + KGD D I G D L +G DV +G D +
Sbjct: 720 IIGSNRKDKFFGSRFTDIFHGAKGD--DEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 774
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
+ GNG+D + G N+ F +G G+D L
Sbjct: 775 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 801
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
+ ++ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 802 QVFEGQY-----------------NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 842
Query: 4552 FADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLL------------ 4695
D Y ++K G IIE+GG D + + LS K+ F R GDDL +
Sbjct: 843 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 902
Query: 4696 FNGSEDQVTVAGWF----NGSGHQVESLVFQDGT-VLSAEVERLIA 4818
+NG + +T+ WF G +++E +V +DG VLS + L A
Sbjct: 903 YNG--NALTIKDWFKEGKEGQNNKIEKIVDKDGAYVLSQYLTELTA 946
Score = 66.7 bits (160), Expect = 2e-09
Identities = 72/262 (27%), Positives = 111/262 (41%), Gaps = 10/262 (3%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
+IG D +GS F D +F+ G D I G D L +G DV +G D +
Sbjct: 720 IIGSNRKDKFFGSRFTD--IFHGAKGDDEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 774
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
+ GNG+D + G N+ F +G G+D L
Sbjct: 775 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 801
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
+ ++G+ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 802 QVFEGQ-----------------YNVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 842
Query: 3556 FADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNG-------- 3711
D Y +++ G IIE+GG D + + DV +R G D++++ G
Sbjct: 843 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 902
Query: 3712 --HDSIRLKDWLTSNGTRNHSADIEQIVFADG 3801
+++ +KDW G + IE+IV DG
Sbjct: 903 YNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 933
Score = 64.0 bits (153), Expect = 1e-08
Identities = 51/146 (34%), Positives = 73/146 (49%), Gaps = 28/146 (19%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND + G G D +N L GG GDD L+V + NVL+GG G+D L
Sbjct: 762 NDVIHGGDGNDHLVGGNGNDRLIGGKGNNFLNGGDGDDELQV-FEGQYNVLLGGAGNDIL 820
Query: 4042 YGS------------------AFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRL 4167
YGS D Y ++K G IIE+GG D + + DV
Sbjct: 821 YGSDGTNLFDGGVGNDKIYGGLGKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGF 880
Query: 4168 LREGQDVVLDLGNG----------HDSIRLKDWLTSNGTRNHSADIEQIVFADG 4299
+R G D++++ G +++ +KDW G + IE+IV DG
Sbjct: 881 IRIGDDLLVNKRIGGTLYYHEDYNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 933
Score = 63.6 bits (152), Expect = 1e-08
Identities = 42/118 (35%), Positives = 63/118 (52%), Gaps = 10/118 (8%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
N L GGAGND+L S N+ GG G+D +YG D Y +++ G IIE+GG D
Sbjct: 809 NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGLGKDIYRYSKEYGRHIIIEKGGDDD 866
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNG----------HDSIRLKDWLTSNGTRNHSADI 3279
+ + DV +R G D++++ G +++ +KDW G + I
Sbjct: 867 TLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHEDYNGNALTIKDWF-KEGKEGQNNKI 925
Query: 3280 EQIVFADG 3303
E+IV DG
Sbjct: 926 EKIVDKDG 933
>gi|1710794|sp|P55129|RT12_ACTPL RTX-I TOXIN DETERMINANT A FROM
SEROTYPES 5/10 (APX-IA) (HEMOLYSIN IA) (HLY-IA)
(CYTOLYSIN IA) (CLY-IA) >gi|497787|dbj|BAA04014| (D16582)
RTX toxin I type L [Actinobacillus pleuropneumoniae]
Length = 1023
Score = 71.4 bits (172), Expect = 6e-11
Identities = 81/269 (30%), Positives = 118/269 (43%), Gaps = 17/269 (6%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
+IG D +GS F D + KGD D I G D L +G DV +G D +
Sbjct: 720 IIGSNRKDKFFGSRFTDIFHGAKGD--DEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 774
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
+ GNG+D + G N+ F +G G+D L
Sbjct: 775 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 801
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
+ ++ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 802 QVFEGQY-----------------NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 842
Query: 4552 FADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLL------------ 4695
D Y ++K G IIE+GG D + + LS K+ F R GDDL +
Sbjct: 843 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 902
Query: 4696 FNGSEDQVTVAGWF----NGSGHQVESLVFQDGT-VLSAEVERLIA 4818
+NG + +T+ WF G +++E +V +DG VLS + L A
Sbjct: 903 YNG--NALTIKDWFKEGKEGQNNKIEKIVDKDGAYVLSQYLTELTA 946
Score = 66.7 bits (160), Expect = 2e-09
Identities = 72/262 (27%), Positives = 111/262 (41%), Gaps = 10/262 (3%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
+IG D +GS F D +F+ G D I G D L +G DV +G D +
Sbjct: 720 IIGSNRKDKFFGSRFTD--IFHGAKGDDEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 774
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
+ GNG+D + G N+ F +G G+D L
Sbjct: 775 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 801
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
+ ++G+ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 802 QVFEGQ-----------------YNVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 842
Query: 3556 FADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNG-------- 3711
D Y +++ G IIE+GG D + + DV +R G D++++ G
Sbjct: 843 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 902
Query: 3712 --HDSIRLKDWLTSNGTRNHSADIEQIVFADG 3801
+++ +KDW G + IE+IV DG
Sbjct: 903 YNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 933
Score = 64.0 bits (153), Expect = 1e-08
Identities = 51/146 (34%), Positives = 73/146 (49%), Gaps = 28/146 (19%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND + G G D +N L GG GDD L+V + NVL+GG G+D L
Sbjct: 762 NDVIHGGDGNDHLVGGNGNDRLIGGKGNNFLNGGDGDDELQV-FEGQYNVLLGGAGNDIL 820
Query: 4042 YGS------------------AFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRL 4167
YGS D Y ++K G IIE+GG D + + DV
Sbjct: 821 YGSDGTNLFDGGVGNDKIYGGLGKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGF 880
Query: 4168 LREGQDVVLDLGNG----------HDSIRLKDWLTSNGTRNHSADIEQIVFADG 4299
+R G D++++ G +++ +KDW G + IE+IV DG
Sbjct: 881 IRIGDDLLVNKRIGGTLYYHEDYNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 933
Score = 63.6 bits (152), Expect = 1e-08
Identities = 42/118 (35%), Positives = 63/118 (52%), Gaps = 10/118 (8%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
N L GGAGND+L S N+ GG G+D +YG D Y +++ G IIE+GG D
Sbjct: 809 NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGLGKDIYRYSKEYGRHIIIEKGGDDD 866
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNG----------HDSIRLKDWLTSNGTRNHSADI 3279
+ + DV +R G D++++ G +++ +KDW G + I
Sbjct: 867 TLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHEDYNGNALTIKDWF-KEGKEGQNNKI 925
Query: 3280 EQIVFADG 3303
E+IV DG
Sbjct: 926 EKIVDKDG 933
>gi|1477457 (U04954) RTX-1 toxin determinant [Actinobacillus
pleuropneumoniae]
Length = 1022
Score = 71.4 bits (172), Expect = 6e-11
Identities = 81/269 (30%), Positives = 118/269 (43%), Gaps = 17/269 (6%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
+IG D +GS F D + KGD D I G D L +G DV +G D +
Sbjct: 719 IIGSNRKDKFFGSRFTDIFHGAKGD--DEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 773
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
+ GNG+D + G N+ F +G G+D L
Sbjct: 774 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 800
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
+ ++ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 801 QVFEGQY-----------------NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 841
Query: 4552 FADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLL------------ 4695
D Y ++K G IIE+GG D + + LS K+ F R GDDL +
Sbjct: 842 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 901
Query: 4696 FNGSEDQVTVAGWF----NGSGHQVESLVFQDGT-VLSAEVERLIA 4818
+NG + +T+ WF G +++E +V +DG VLS + L A
Sbjct: 902 YNG--NALTIKDWFKEGKEGQNNKIEKIVDKDGAYVLSQYLTELTA 945
Score = 66.7 bits (160), Expect = 2e-09
Identities = 72/262 (27%), Positives = 111/262 (41%), Gaps = 10/262 (3%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
+IG D +GS F D +F+ G D I G D L +G DV +G D +
Sbjct: 719 IIGSNRKDKFFGSRFTD--IFHGAKGDDEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 773
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
+ GNG+D + G N+ F +G G+D L
Sbjct: 774 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 800
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
+ ++G+ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 801 QVFEGQ-----------------YNVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 841
Query: 3556 FADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNG-------- 3711
D Y +++ G IIE+GG D + + DV +R G D++++ G
Sbjct: 842 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 901
Query: 3712 --HDSIRLKDWLTSNGTRNHSADIEQIVFADG 3801
+++ +KDW G + IE+IV DG
Sbjct: 902 YNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 932
Score = 64.4 bits (154), Expect = 8e-09
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 54/282 (19%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3633
+E G+ ++ S +++ G G D Y YL G Q + +V
Sbjct: 608 IESHLGEKNDRIYLSSGSSIVYAGNGHDVAYYDKTDTGYLTFDGQS-----AQKAGEYIV 662
Query: 3634 FGEGILAADVRLLRE---GQDVVLDLGNGHDSIRLKDWLTS-----NGTR--NHSADIEQ 3783
E L ADV++L+E QD+ +G + + +D+ S NG R + +E+
Sbjct: 663 TKE--LKADVKVLKEVVKTQDI--SVGKRSEKLEYRDYELSPFELGNGIRAKDELHSVEE 718
Query: 3784 IVFAD------GTLWTPEXXXXXXXXXXXXXX----------NDTLKGWQGKDIXXXXXX 3915
I+ ++ G+ +T ND + G G D
Sbjct: 719 IIGSNRKDKFFGSRFTDIFHGAKGDDEIYGNDGHDILYGDDGNDVIHGGDGNDHLVGGNG 778
Query: 3916 XXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGS--------------- 4050
+N L GG GDD L+V + NVL+GG G+D LYGS
Sbjct: 779 NDRLIGGKGNNFLNGGDGDDELQV-FEGQYNVLLGGAGNDILYGSDGTNLFDGGVGNDKI 837
Query: 4051 ---AFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNG---- 4209
D Y ++K G IIE+GG D + + DV +R G D++++ G
Sbjct: 838 YGGLGKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLY 897
Query: 4210 ------HDSIRLKDWLTSNGTRNHSADIEQIVFADG 4299
+++ +KDW G + IE+IV DG
Sbjct: 898 YHEDYNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 932
Score = 63.6 bits (152), Expect = 1e-08
Identities = 42/118 (35%), Positives = 63/118 (52%), Gaps = 10/118 (8%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
N L GGAGND+L S N+ GG G+D +YG D Y +++ G IIE+GG D
Sbjct: 808 NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGLGKDIYRYSKEYGRHIIIEKGGDDD 865
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNG----------HDSIRLKDWLTSNGTRNHSADI 3279
+ + DV +R G D++++ G +++ +KDW G + I
Sbjct: 866 TLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHEDYNGNALTIKDWF-KEGKEGQNNKI 924
Query: 3280 EQIVFADG 3303
E+IV DG
Sbjct: 925 EKIVDKDG 932
>gi|2144674|pir||I39643 toxin I - Actinobacillus pleuropneumoniae
>gi|312899|emb|CAA51548| (X73117) apxIA [Actinobacillus
pleuropneumoniae] >gi|606616 (U05042) RTX-1 toxin
determinant [Actinobacillus pleuropneumoniae]
Length = 1022
Score = 71.4 bits (172), Expect = 6e-11
Identities = 81/269 (30%), Positives = 118/269 (43%), Gaps = 17/269 (6%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
+IG D +GS F D + KGD D I G D L +G DV +G D +
Sbjct: 719 IIGSNRKDKFFGSRFTDIFHGAKGD--DEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 773
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
+ GNG+D + G N+ F +G G+D L
Sbjct: 774 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 800
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
+ ++ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 801 QVFEGQY-----------------NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 841
Query: 4552 FADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLL------------ 4695
D Y ++K G IIE+GG D + + LS K+ F R GDDL +
Sbjct: 842 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 901
Query: 4696 FNGSEDQVTVAGWF----NGSGHQVESLVFQDGT-VLSAEVERLIA 4818
+NG + +T+ WF G +++E +V +DG VLS + L A
Sbjct: 902 YNG--NALTIKDWFKEGKEGQNNKIEKIVDKDGAYVLSQYLTELTA 945
Score = 66.7 bits (160), Expect = 2e-09
Identities = 72/262 (27%), Positives = 111/262 (41%), Gaps = 10/262 (3%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
+IG D +GS F D +F+ G D I G D L +G DV +G D +
Sbjct: 719 IIGSNRKDKFFGSRFTD--IFHGAKGDDEIYGNDGHDILYGDDG---NDVIHGGDGNDHL 773
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
+ GNG+D + G N+ F +G G+D L
Sbjct: 774 VG-GNGNDRL-------IGGKGNN--------FLNG-----------------GDGDDEL 800
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
+ ++G+ N L GGAG+D+L S N+ GG G+D +YG
Sbjct: 801 QVFEGQ-----------------YNVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGL 841
Query: 3556 FADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNG-------- 3711
D Y +++ G IIE+GG D + + DV +R G D++++ G
Sbjct: 842 GKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHED 901
Query: 3712 --HDSIRLKDWLTSNGTRNHSADIEQIVFADG 3801
+++ +KDW G + IE+IV DG
Sbjct: 902 YNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 932
Score = 64.4 bits (154), Expect = 8e-09
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 54/282 (19%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3633
+E G+ ++ S +++ G G D Y YL G Q + +V
Sbjct: 608 IESHLGEKNDRIYLSSGSSIVYAGNGHDVAYYDKTDTGYLTFDGQS-----AQKAGEYIV 662
Query: 3634 FGEGILAADVRLLRE---GQDVVLDLGNGHDSIRLKDWLTS-----NGTR--NHSADIEQ 3783
E L ADV++L+E QD+ +G + + +D+ S NG R + +E+
Sbjct: 663 TKE--LKADVKVLKEVVKTQDI--SVGKRSEKLEYRDYELSPFELGNGIRAKDELHSVEE 718
Query: 3784 IVFAD------GTLWTPEXXXXXXXXXXXXXX----------NDTLKGWQGKDIXXXXXX 3915
I+ ++ G+ +T ND + G G D
Sbjct: 719 IIGSNRKDKFFGSRFTDIFHGAKGDDEIYGNDGHDILYGDDGNDVIHGGDGNDHLVGGNG 778
Query: 3916 XXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGS--------------- 4050
+N L GG GDD L+V + NVL+GG G+D LYGS
Sbjct: 779 NDRLIGGKGNNFLNGGDGDDELQV-FEGQYNVLLGGAGNDILYGSDGTNLFDGGVGNDKI 837
Query: 4051 ---AFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNG---- 4209
D Y ++K G IIE+GG D + + DV +R G D++++ G
Sbjct: 838 YGGLGKDIYRYSKEYGRHIIIEKGGDDDTLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLY 897
Query: 4210 ------HDSIRLKDWLTSNGTRNHSADIEQIVFADG 4299
+++ +KDW G + IE+IV DG
Sbjct: 898 YHEDYNGNALTIKDWF-KEGKEGQNNKIEKIVDKDG 932
Score = 63.6 bits (152), Expect = 1e-08
Identities = 42/118 (35%), Positives = 63/118 (52%), Gaps = 10/118 (8%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
N L GGAGND+L S N+ GG G+D +YG D Y +++ G IIE+GG D
Sbjct: 808 NVLLGGAGNDILYGS--DGTNLFDGGVGNDKIYGGLGKDIYRYSKEYGRHIIIEKGGDDD 865
Query: 3130 LVFGEGILAADVRLLREGQDVVLDLGNG----------HDSIRLKDWLTSNGTRNHSADI 3279
+ + DV +R G D++++ G +++ +KDW G + I
Sbjct: 866 TLLLSDLSFKDVGFIRIGDDLLVNKRIGGTLYYHEDYNGNALTIKDWF-KEGKEGQNNKI 924
Query: 3280 EQIVFADG 3303
E+IV DG
Sbjct: 925 EKIVDKDG 932
>gi|3128319 (AF010496) hypothetical protein [Rhodobacter capsulatus]
Length = 643
Score = 71.0 bits (171), Expect = 8e-11
Identities = 72/270 (26%), Positives = 113/270 (41%)
Frame = +1
Query: 2875 LEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGS 3054
L GGA ++ ++GGAGND ++S +++++GG G+DTL G
Sbjct: 148 LVGGAGNDSIRAGAGNDTVTGNAGNDTIDGGAGND--RLSGNDGNDLILGGAGNDTLDGG 205
Query: 3055 AFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLK 3234
A G DT+ G D + G G+ AD + L +
Sbjct: 206 A-----------GDDTLAGGAGADSITGGSGMDYADYSASSGAVTIDLSRWSAAGGDAAG 254
Query: 3235 DWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXX 3414
D LTS SA + ++ D +++ G+DT+ G G DI
Sbjct: 255 DTLTSVDGVIGSAYGDSLIGFDDAVYSGSDVYTNIFYGGG--GDDTIDGRGGNDILYGGD 312
Query: 3415 XXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGH 3594
++ + GG+GDD L + ++ L+GG G DTL G A ADT++ + G
Sbjct: 313 D---------NDLILGGSGDDSLFGD--AGNDTLAGGAGADTLSGGAGADTFVLDAQSGA 361
Query: 3595 DTIIEQGGTDKLVFGEGILAADVRLLREGQ 3684
D+I + T +V G+ DV LR+ Q
Sbjct: 362 DSITDFEFT--MVGGKTRDQIDVSGLRDDQ 389
Score = 61.7 bits (147), Expect = 5e-08
Identities = 60/248 (24%), Positives = 100/248 (40%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
+ L G G D ++ ++GGAG+D ++S +++++GG G+DTL
Sbjct: 145 SSALVGGAGNDSIRAGAGNDTVTGNAGNDTIDGGAGND--RLSGNDGNDLILGGAGNDTL 202
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 4221
G A G DT+ G D + G G+ AD + L +
Sbjct: 203 DGGA-----------GDDTLAGGAGADSITGGSGMDYADYSASSGAVTIDLSRWSAAGGD 251
Query: 4222 RLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXX 4401
D LTS SA + ++ D +++ G+DT+ G
Sbjct: 252 AAGDTLTSVDGVIGSAYGDSLIGFDDAVYSGSDVYTNIFYGGG--GDDTIDG-------- 301
Query: 4402 XXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKG 4581
++ + GG+GDD L + ++ L+GG G DTL G A ADT++ +
Sbjct: 302 -RGGNDILYGGDDNDLILGGSGDDSLFGD--AGNDTLAGGAGADTLSGGAGADTFVLDAQ 358
Query: 4582 DGHDTIIE 4605
G D+I +
Sbjct: 359 SGADSITD 366
Score = 58.6 bits (139), Expect = 5e-07
Identities = 66/254 (25%), Positives = 110/254 (42%), Gaps = 12/254 (4%)
Frame = +1
Query: 3997 SADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 4176
+ + L+GG G+D++ A DT N G+DTI G D+L +G D+ L
Sbjct: 143 TVSSALVGGAGNDSIRAGAGNDTVTGNA--GNDTIDGGAGNDRLSGNDG---NDLILGGA 197
Query: 4177 GQDVVLDLGNGHDSI---RLKDWLTSNGTRNHS--ADIEQIVFADGTLWTPEXXXXXXXX 4341
G D LD G G D++ D +T +++ + V D + W+
Sbjct: 198 GND-TLDGGAGDDTLAGGAGADSITGGSGMDYADYSASSGAVTIDLSRWSAAGGDAAGDT 256
Query: 4342 XXXXPG------NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSAD 4503
G D+L G+ + ++G G+D+L Y D
Sbjct: 257 LTSVDGVIGSAYGDSLIGFDDAVYSGSDVYTNIFYGGGGDDTIDGRGGNDIL---YGGDD 313
Query: 4504 N-VLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGD 4680
N ++ GG+GDD+L+G A DT G G DT+ G D V L + + +
Sbjct: 314 NDLILGGSGDDSLFGDAGNDT--LAGGAGADTLSGGAGADTFV----LDAQSGADSITDF 367
Query: 4681 DLSLLFNGSEDQVTVAGWFNGSGHQV 4758
+ +++ + DQ+ V+G + G+ V
Sbjct: 368 EFTMVGGKTRDQIDVSGLRDDQGNPV 393
>gi|95925|pir||S10056 hemolysin A - Escherichia coli plasmid pHly152
>gi|225074|prf||1208296B hemolysin hlyA [Escherichia
coli]
Length = 1024
Score = 71.0 bits (171), Expect = 8e-11
Identities = 76/268 (28%), Positives = 103/268 (38%), Gaps = 7/268 (2%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
LIG T D +GS F D +F+ DG D I G D+L +G+ +G D
Sbjct: 722 LIGTTRADKFFGSKFTD--IFHGADGDDLIEGNDGNDRL-YGD-----------KGNDT- 766
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
L GNG D Q+ DG GN+ L
Sbjct: 767 LSGGNGDD---------------------QLYGGDGN-----------DKLIGVAGNNYL 794
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
G G D N L GG G+D L S ++L GG GDD L G
Sbjct: 795 NGGDGDD------ELQVQGNSLAKNVLFGGKGNDKLYGS--EGADLLDGGEGDDLLKGGY 846
Query: 3556 FADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGH------- 3714
D Y + G GH I + GG + + I DV REG D+++ G G+
Sbjct: 847 GNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHK 906
Query: 3715 DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3819
+ I ++W + +IEQI G + TP+
Sbjct: 907 NGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
Score = 66.3 bits (159), Expect = 2e-09
Identities = 54/152 (35%), Positives = 71/152 (46%), Gaps = 26/152 (17%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS-ADNVLIGGTG--- 4029
NDTL G G D +N L GG GDD L+V S A NVL GG G
Sbjct: 764 NDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDELQVQGNSLAKNVLFGGKGNDK 823
Query: 4030 ---------------DDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVR 4164
DD L G D Y + G GH I + GG + + I DV
Sbjct: 824 LYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVA 883
Query: 4165 LLREGQDVVLDLGNGH-------DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 4317
REG D+++ G G+ + I ++W + +IEQI G + TP+
Sbjct: 884 FKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
Score = 63.2 bits (151), Expect = 2e-08
Identities = 52/150 (34%), Positives = 71/150 (46%), Gaps = 26/150 (17%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWS-ADNVLIGGTGDDTLY 3048
TL GG +N L GG G+D L+V S A NVL GG G+D LY
Sbjct: 766 TLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDELQVQGNSLAKNVLFGGKGNDKLY 825
Query: 3049 GSAFA------------------DTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLL 3174
GS A D Y + G GH I + GG + + I DV
Sbjct: 826 GSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFK 885
Query: 3175 REGQDVVLDLGNGH-------DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3321
REG D+++ G G+ + I ++W + +IEQI G + TP+
Sbjct: 886 REGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
Score = 62.8 bits (150), Expect = 2e-08
Identities = 50/148 (33%), Positives = 73/148 (48%), Gaps = 31/148 (20%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS-ADNVL------- 4512
GNDTL G +N L GG GDD L+V S A NVL
Sbjct: 763 GNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDELQVQGNSLAKNVLFGGKGND 822
Query: 4513 -----------SGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEA 4659
GG GDD L G D Y + G GH I + GG + + A + ++
Sbjct: 823 KLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDV 882
Query: 4660 RFTRSGDDL-------SLLFNGSEDQVTVAGWFNG-----SGHQVESLVFQDGTVLSAE 4800
F R G+DL ++L G ++ +T WF S H++E + + G +++ +
Sbjct: 883 AFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
>gi|123197|sp|P08715|HLYA_ECOLI HEMOLYSIN, PLASMID
>gi|150682|gb|AAA98233.1| (M14107) hemolysin A
[Escherichia coli]
Length = 1024
Score = 71.0 bits (171), Expect = 8e-11
Identities = 76/268 (28%), Positives = 103/268 (38%), Gaps = 7/268 (2%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
LIG T D +GS F D +F+ DG D I G D+L +G+ +G D
Sbjct: 722 LIGTTRADKFFGSKFTD--IFHGADGDDLIEGNDGNDRL-YGD-----------KGNDT- 766
Query: 3196 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 3375
L GNG D Q+ DG GN+ L
Sbjct: 767 LSGGNGDD---------------------QLYGGDGN-----------DKLIGVAGNNYL 794
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
G G D N L GG G+D L S ++L GG GDD L G
Sbjct: 795 NGGDGDD------EFQVQGNSLAKNVLFGGKGNDKLYGS--EGADLLDGGEGDDLLKGGY 846
Query: 3556 FADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGH------- 3714
D Y + G GH I + GG + + I DV REG D+++ G G+
Sbjct: 847 GNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHK 906
Query: 3715 DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3819
+ I ++W + +IEQI G + TP+
Sbjct: 907 NGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
Score = 65.2 bits (156), Expect = 5e-09
Identities = 74/268 (27%), Positives = 101/268 (37%), Gaps = 7/268 (2%)
Frame = +1
Query: 3514 LSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3693
L G T D +GS F D +F+ DG D I G D+L +G+ +G D
Sbjct: 722 LIGTTRADKFFGSKFTD--IFHGADGDDLIEGNDGNDRL-YGD-----------KGNDT- 766
Query: 3694 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTL 3873
L GNG D Q+ DG N+ L
Sbjct: 767 LSGGNGDD---------------------QLYGGDGN-----------DKLIGVAGNNYL 794
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
G G D N L GG G+D L S ++L GG GDD L G
Sbjct: 795 NGGDGDD------EFQVQGNSLAKNVLFGGKGNDKLYGS--EGADLLDGGEGDDLLKGGY 846
Query: 4054 FADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGH------- 4212
D Y + G GH I + GG + + I DV REG D+++ G G+
Sbjct: 847 GNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHK 906
Query: 4213 DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 4317
+ I ++W + +IEQI G + TP+
Sbjct: 907 NGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
Score = 64.4 bits (154), Expect = 8e-09
Identities = 71/263 (26%), Positives = 104/263 (38%), Gaps = 12/263 (4%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
LIG T D +GS F D +F+ DG D I G D+L +G+ +G D
Sbjct: 722 LIGTTRADKFFGSKFTD--IFHGADGDDLIEGNDGNDRL-YGD-----------KGNDT- 766
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
L GNG D Q+ DG GN+ L
Sbjct: 767 LSGGNGDD---------------------QLYGGDGN-----------DKLIGVAGNNYL 794
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
G N L GG G+D L S ++L GG GDD L G
Sbjct: 795 NGGDGDDEFQVQGNSLA------KNVLFGGKGNDKLYGS--EGADLLDGGEGDDLLKGGY 846
Query: 4552 FADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDL-------SLLFNGSE 4710
D Y + G GH I + GG + + A + ++ F R G+DL ++L G +
Sbjct: 847 GNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHK 906
Query: 4711 DQVTVAGWFNG-----SGHQVESLVFQDGTVLSAE 4800
+ +T WF S H++E + + G +++ +
Sbjct: 907 NGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
Score = 61.7 bits (147), Expect = 5e-08
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 26/150 (17%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWS-ADNVLIGGTGDDTLY 3048
TL GG +N L GG G+D +V S A NVL GG G+D LY
Sbjct: 766 TLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLY 825
Query: 3049 GSAFA------------------DTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLL 3174
GS A D Y + G GH I + GG + + I DV
Sbjct: 826 GSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFK 885
Query: 3175 REGQDVVLDLGNGH-------DSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3321
REG D+++ G G+ + I ++W + +IEQI G + TP+
Sbjct: 886 REGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941
>gi|6671128|gb|AAF23102.1| (AF188857) ApxIVA [Actinobacillus
pleuropneumoniae] >gi|6671130|gb|AAF23103.1| (AF188858)
ApxIVA [Actinobacillus pleuropneumoniae]
>gi|6671134|gb|AAF23105.1| (AF188860) ApxIVA
[Actinobacillus pleuropneumoniae]
>gi|6671136|gb|AAF23106.1| (AF188861) ApxIVA
[Actinobacillus pleuropneumoniae]
>gi|6671138|gb|AAF23107.1| (AF188862) ApxIVA
[Actinobacillus pleuropneumoniae]
>gi|6671140|gb|AAF23108.1| (AF188863) ApxIVA
[Actinobacillus pleuropneumoniae]
>gi|6671142|gb|AAF23109.1| (AF188864) ApxIVA
[Actinobacillus pleuropneumoniae]
>gi|6671144|gb|AAF23110.1| (AF188865) ApxIVA
[Actinobacillus pleuropneumoniae]
>gi|6671146|gb|AAF23111.1| (AF188866) ApxIVA
[Actinobacillus pleuropneumoniae]
>gi|6671148|gb|AAF23112.1| (AF188867) ApxIVA
[Actinobacillus pleuropneumoniae]
Length = 130
Score = 69.9 bits (168), Expect = 2e-10
Identities = 43/118 (36%), Positives = 70/118 (58%), Gaps = 8/118 (6%)
Frame = +1
Query: 4450 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK-- 4623
++ GAG+D V+ + D+ L GG G+D L G ADTY+F+KG G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 4624 -----LVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESL-VFQDGT 4785
L F ++ E F+R +DL + SED+VTV W++ H++E++ + + T
Sbjct: 66 RDIDTLKF-TDINLSELWFSRENNDLIIKSLLSEDKVTVQNWYSHQDHKIENIRLSNEQT 124
Query: 4786 VLSAEV 4803
++S +V
Sbjct: 125 LVSTQV 130
Score = 55.4 bits (131), Expect = 4e-06
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK-- 3129
++ GAGND V+ + D+ LIGG G+D L G ADTY+F++G G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 3130 -----LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3240
L F + I +++ RE D+++ D + +++W
Sbjct: 66 RDIDTLKFTD-INLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 55.0 bits (130), Expect = 5e-06
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK-- 4125
++ GAG+D V+ + D+ LIGG G+D L G ADTY+F+KG G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 4126 -----LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 4236
L F + I +++ RE D+++ D + +++W
Sbjct: 66 RDIDTLKFTD-INLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
Score = 51.2 bits (120), Expect = 8e-05
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK-- 3627
++ GAG+D V+ + D+ L GG G+D L G ADTY+F++G G D + E D
Sbjct: 8 IDAGAGNDT--VNGGNGDDTLIGGKGNDILRGGYGADTYIFSKGHGQDIVYEDTNNDNRA 65
Query: 3628 -----LVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW 3738
L F + I +++ RE D+++ D + +++W
Sbjct: 66 RDIDTLKFTD-INLSELWFSRENNDLIIKSLLSEDKVTVQNW 106
>gi|790692 (L39096) mannuronan C-5-epimerase [Azotobacter vinelandii]
Length = 1403
Score = 69.5 bits (167), Expect = 2e-10
Identities = 165/647 (25%), Positives = 221/647 (33%), Gaps = 47/647 (7%)
Frame = +1
Query: 2872 TLEGGAXXXXXXXXXXXXXXXXXXXSNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYG 3051
TLEG A +RL G AGND+L GG G D L G
Sbjct: 385 TLEGSAGNDALSGTEAHETLLGQAGDDRLNGDAGNDILD-----------GGAGRDNLTG 433
Query: 3052 SAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDV----VLDLGNGHD 3219
A ADT+ F+ + TD F + L D + D+ LG+G++
Sbjct: 434 GAGADTFRFS------ARTDSYRTDSASFND--LITDFDADEDSIDLSALGFTGLGDGYN 485
Query: 3220 SIRLKDWLTSNGTR----NHSADIEQIVF---ADGT---LWTPEXXXXXXXXXXXXPGND 3369
L + GTR ++ AD + F DG L+ G+D
Sbjct: 486 GTLLLK-TNAEGTRTYLKSYEADAQGRRFEIALDGNFTGLFNDNNLLFDAAPATGTEGSD 544
Query: 3370 TLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYG 3549
L G + ++ L GGAGDD +L GG G D+L G
Sbjct: 545 NLLGTDAGE---------TLLGYGGNDTLNGGAGDD-----------ILVGGAGRDSLTG 584
Query: 3550 SAFADTYLF---NQGDGHDTIIEQGGTDKLVFGEGILAADVRLL--------REGQDVVL 3696
A AD + F + + T + L F + DV L R G V+
Sbjct: 585 GAGADVFRFDALSDSQRNYTTGDNQADRILDFDPTLDRIDVSALGFTGLGNGRNGTLAVV 644
Query: 3697 DLGNGHDSIRLKDW----------LTSNGTRNHSADIEQIVFA--DGTLWTPEXXXXXXX 3840
L + D LK + L+ G EQ VFA G T
Sbjct: 645 -LNSAGDRTDLKSYDTDANGYSFELSLAGNYQGQLSAEQFVFATSQGGQMTIIEGTDGND 703
Query: 3841 XXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIG 4020
N+ L G G+D L GGAGDD+L G
Sbjct: 704 TLQGTEANERLLGLDGRD------------------NLNGGAGDDILD-----------G 734
Query: 4021 GTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDV---- 4188
G G DTL G ADT+LF+ T + TD F + L D ++ D+
Sbjct: 735 GAGRDTLTGGTGADTFLFS------TRTDSYRTDSASFND--LITDFDPTQDRIDLSGLG 786
Query: 4189 VLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN-- 4362
GNG+D L + + GTR + E AD E GN
Sbjct: 787 FSGFGNGYDGTLLLQ-VNAAGTRTYLKSFE----ADANGQRFEIALDGDFSGQLDSGNVI 841
Query: 4363 ---DTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDD 4533
G G L + +G GD
Sbjct: 842 FEPAVFNAKDFGALGDGASDDRPAIQAAIDAAYAAGGGTVYLPAGEYRVSP--TGEPGDG 899
Query: 4534 TLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSG-DDLSLLFNGSE 4710
L YL G G I G+D+ + G S + G DL+L N
Sbjct: 900 CL--MLKDGVYLAGDGIGETVIKLIDGSDQKITGMVRSAYGEETSNFGMSDLTLDGNRDN 957
Query: 4711 DQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERL 4812
V GWFNG + QDG + +ER+
Sbjct: 958 TSGKVDGWFNG------YIPGQDGADRNVTIERV 985
Score = 46.1 bits (107), Expect = 0.003
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +1
Query: 4453 EGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF 4632
+G G+DVL S A++ L GG GDD L G A D L + G G D + G D VF
Sbjct: 1226 QGTDGNDVLVGS--DANDQLYGGAGDDRLDGGAGDD--LLDGGAGRDDLTGGTGADTFVF 1281
Query: 4633 GAGLSRKEARFTRSG--DDLSLLFNGSEDQVTVAG-WFNGSG 4749
A R ++ T +G +DL L F+ SED++ ++ F+G G
Sbjct: 1282 AA---RTDSYRTDAGVFNDLILDFDASEDRIDLSALGFSGFG 1320
Score = 43.4 bits (100), Expect = 0.017
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +1
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
+G G D+ +RL+GGAGDD+L D L+GGTG DT +A
Sbjct: 1226 QGTDGNDVLVGSDANDQLYGGAGDDRLDGGAGDDLLDGGAGRDD--LTGGTGADTFVFAA 1283
Query: 3556 FADTYLFNQGDGHDTIIE 3609
D+Y + G +D I++
Sbjct: 1284 RTDSYRTDAGVFNDLILD 1301
Score = 40.6 bits (93), Expect = 0.11
Identities = 36/113 (31%), Positives = 55/113 (47%), Gaps = 2/113 (1%)
Frame = +1
Query: 3445 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3624
+++L GGAGDD ++ + D++L GG G D L G ADT++F + TD
Sbjct: 1240 NDQLYGGAGDD--RLDGGAGDDLLDGGAGRDDLTGGTGADTFVF------AARTDSYRTD 1291
Query: 3625 KLVFGEGILAADVRLLREGQDVV--LDLGNGHDSIRLKDWLTSNGTRNHSADIEQ 3783
VF + IL D R + G+G++ L L+S GTR + E+
Sbjct: 1292 AGVFNDLILDFDASEDRIDLSALGFSGFGDGYNGTLLVQ-LSSAGTRTYLKSYEE 1345
Score = 40.2 bits (92), Expect = 0.15
Identities = 39/136 (28%), Positives = 55/136 (39%), Gaps = 2/136 (1%)
Frame = +1
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
+G G D+ +RL+GGAGDD+L GG G D L G
Sbjct: 1226 QGTDGNDVLVGSDANDQLYGGAGDDRLDGGAGDDLLD-----------GGAGRDDLTGGT 1274
Query: 4054 FADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV--LDLGNGHDSIRL 4227
ADT++F + TD VF + IL D R + G+G++ L
Sbjct: 1275 GADTFVF------AARTDSYRTDAGVFNDLILDFDASEDRIDLSALGFSGFGDGYNGTLL 1328
Query: 4228 KDWLTSNGTRNHSADIEQ 4281
L+S GTR + E+
Sbjct: 1329 VQ-LSSAGTRTYLKSYEE 1345
Score = 37.9 bits (86), Expect = 0.75
Identities = 35/91 (38%), Positives = 42/91 (45%), Gaps = 4/91 (4%)
Frame = +1
Query: 2959 EGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVF 3138
+G GNDVL S A++ L GG GDD L G A D L + G G D + G D VF
Sbjct: 1226 QGTDGNDVLVGS--DANDQLYGGAGDDRLDGGAGDD--LLDGGAGRDDLTGGTGADTFVF 1281
Query: 3139 GEGILAADVRLLREG----QDVVLDLGNGHDSIRL 3231
AA R D++LD D I L
Sbjct: 1282 -----AARTDSYRTDAGVFNDLILDFDASEDRIDL 1311
Score = 37.5 bits (85), Expect = 0.98
Identities = 35/113 (30%), Positives = 55/113 (47%), Gaps = 2/113 (1%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
+++L GGAG+D ++ + D++L GG G D L G ADT++F + TD
Sbjct: 1240 NDQLYGGAGDD--RLDGGAGDDLLDGGAGRDDLTGGTGADTFVF------AARTDSYRTD 1291
Query: 3127 KLVFGEGILAADVRLLREGQDVV--LDLGNGHDSIRLKDWLTSNGTRNHSADIEQ 3285
VF + IL D R + G+G++ L L+S GTR + E+
Sbjct: 1292 AGVFNDLILDFDASEDRIDLSALGFSGFGDGYNGTLLVQ-LSSAGTRTYLKSYEE 1345
>gi|2735684 (AF002131) oscillin [Phormidium uncinatum]
Length = 646
Score = 69.1 bits (166), Expect = 3e-10
Identities = 156/611 (25%), Positives = 234/611 (37%), Gaps = 59/611 (9%)
Frame = +1
Query: 2965 GAGNDVLKVSYWSADNVLIGGTGD----------DTLYGSAFADT--------YLFNQGD 3090
G G D ++ + + LI G GD DTLYG D+ YL+ G
Sbjct: 26 GGGADFIRTA--TLGGSLIFGQGDYDTLIALGPNDTLYGGDDEDSLRTQRTPAYLYGDG- 82
Query: 3091 GHDTIIEQ-------GGTDKLVFGEGILAADVRLLREGQDVVLDL---------GNGHDS 3222
G+DTII + G D + +G A++ EG D++L G G+DS
Sbjct: 83 GNDTIIAEARATMYGGAADDFI--QGTAEANLMFGNEGADIMLGGAQRRDSLYGGKGNDS 140
Query: 3223 IRLKDWL---TSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGK 3393
I ++N N S I V +G + DTL G +GK
Sbjct: 141 IGFFTGAGDGSNNLGLNLSGGIAGFVGNEGNNFLRGDLGDDLLAAINQ--RDTLYGGKGK 198
Query: 3394 DIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNV--------LSGGTGDDTLYG 3549
D S+ L + L+ +++S V L GG GDD+LYG
Sbjct: 199 DTLRVVGSNSYASGDDDSDILRVV---NTLETNFFSTSPVTIGLERTTLLGGAGDDSLYG 255
Query: 3550 SAF---ADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDS 3720
++ GDG+DTI+ F + +L +D G+D
Sbjct: 256 GIGDFRGGKNFYDGGDGNDTIVS------FAFQDTVLGSD----------------GNDF 293
Query: 3721 IRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIX 3900
I T+ G + A+I TP G+ G +
Sbjct: 294 ITSS---TATGISSQGANIS----------TP--------------------GYSGNSL- 319
Query: 3901 XXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNK 4080
L+GG G+D ++ ++ + + +IGG G D+L G F +
Sbjct: 320 -----------------LDGGRGNDTIRAAF--STDTMIGGEGSDSLSG-VFTQA---SG 356
Query: 4081 GDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRN 4260
DG DTI D L + LD G G+D RL ++ N
Sbjct: 357 ADGDDTI------------------DASLAANFGPITLDGGLGND--RLIGNRSATNFFN 396
Query: 4261 HSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXX 4440
+ IVFA GNDT+ +
Sbjct: 397 GGEGNDFIVFAS----------TGDSLIGSFGGNDTIS-YATNVSFGNITTPTVISDFLG 445
Query: 4441 SNRLEGGAGDDVLKVSYWS-----------ADNVLSGGTGDDTLYGSAFADTYLFNKGDG 4587
+N + GG G D + + + + L GG GDD+LYG D + G+G
Sbjct: 446 NNLITGGNGRDSITTGAGNDILIGGPQGDLSTDTLDGGDGDDSLYGDFGNDNLI--GGNG 503
Query: 4588 HDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESL 4767
+DT++ G+D L G SG+D+ + FN E TV +G V+ +
Sbjct: 504 NDTLVGGPGSDTLTGG------------SGNDVFVYFNPFEGG-TVTAQVDGI---VDFV 547
Query: 4768 VFQDGTVLSA 4797
V QD LS+
Sbjct: 548 VGQDRIALSS 557
Score = 63.6 bits (152), Expect = 1e-08
Identities = 109/404 (26%), Positives = 149/404 (35%), Gaps = 21/404 (5%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAF---ADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQ 3186
L+GG GDD+LYG ++ GDG+DTI+ F + +L +D
Sbjct: 244 LLGGAGDDSLYGGIGDFRGGKNFYDGGDGNDTIVS------FAFQDTVLGSD-------- 289
Query: 3187 DVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGN 3366
G+D I T+ G + A+I TP GN
Sbjct: 290 --------GNDFITSS---TATGISSQGANIS----------TPGYS-----------GN 317
Query: 3367 DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEG------GA-GDDVLKVSYWS--ADNVLS 3519
L G +G D S+ L G GA GDD + S + L
Sbjct: 318 SLLDGGRGNDTIRAAFSTDTMIGGEGSDSLSGVFTQASGADGDDTIDASLAANFGPITLD 377
Query: 3520 GGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV-- 3693
GG G+D L G+ A T FN G+G+D I+ D L+ G G D +
Sbjct: 378 GGLGNDRLIGNRSA-TNFFNGGEGNDFIVFASTGDSLIGSFG-----------GNDTISY 425
Query: 3694 ---LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXN 3864
+ GN + D+L +N I +G N
Sbjct: 426 ATNVSFGNITTPTVISDFLGNN----------LITGGNGR-----------DSITTGAGN 464
Query: 3865 DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLY 4044
D L G D+ ++ L+GG GDD L + + DN LIGG G+DTL
Sbjct: 465 DILIGGPQGDLS--------------TDTLDGGDGDDSLYGDFGN-DN-LIGGNGNDTLV 508
Query: 4045 GSAFADTYLFNKGDGHDTIIEQGGTDKLV----FGEGILAADVRLLREGQDVVLDLGNGH 4212
G G G DT+ G D V F G + A V D ++D G
Sbjct: 509 G-----------GPGSDTLTGGSGNDVFVYFNPFEGGTVTAQV-------DGIVDFVVGQ 550
Query: 4213 DSIRL 4227
D I L
Sbjct: 551 DRIAL 555
Score = 41.4 bits (95), Expect = 0.066
Identities = 41/142 (28%), Positives = 62/142 (42%), Gaps = 9/142 (6%)
Frame = +1
Query: 4450 LEGGAGDDVLKVS---YWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4620
L GGAGDD L + N GG G+DT+ AF DT L DG+D I T
Sbjct: 244 LLGGAGDDSLYGGIGDFRGGKNFYDGGDGNDTIVSFAFQDTVL--GSDGNDFITSSTAT- 300
Query: 4621 KLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFN------GSGHQVESLVFQDG 4782
G+S + A + G + L +G T+ F+ G G S VF
Sbjct: 301 ------GISSQGANISTPGYSGNSLLDGGRGNDTIRAAFSTDTMIGGEGSDSLSGVFTQA 354
Query: 4783 TVLSAEVERLIAAMALSPAVTTMQASVGETK 4875
+ + + + A++A + T+ +G +
Sbjct: 355 SGADGD-DTIDASLAANFGPITLDGGLGNDR 384
>gi|3253294 (AF043471) hemolysin [Escherichia coli]
Length = 998
Score = 68.7 bits (165), Expect = 4e-10
Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 61/266 (22%)
Frame = +1
Query: 4003 DNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 4170
D+++ G G ++ DT +NK D I+ G K GE I++ DV++L
Sbjct: 605 DDIVYSGAGSSEVFAGEGHDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 662
Query: 4171 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIVF-------------- 4290
+E ++ + +G + I+ +D+ G + +E+++
Sbjct: 663 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 722
Query: 4291 ----ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEG 4458
ADG + G+D + G Q +N L G
Sbjct: 723 IFHGADGNDYIE--GNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTG 780
Query: 4459 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT------------------YLFNKGD 4584
G+G+D L+ A N+LSGGTGDD LYG D Y++ +
Sbjct: 781 GSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYRQNY 838
Query: 4585 GHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDL--------SLLFNGSED--QVTVAGW 4734
GH TI ++GG + + +S + F + G+DL +L FN S D +T W
Sbjct: 839 GHHTIADEGGKGDRLHLSDISFDDIAFKKVGNDLIMNKAINGALSFNESNDVNGITFKNW 898
Query: 4735 F--NGSG---HQVESLVFQDGTVLSAE 4800
F + SG H VE + +DG + A+
Sbjct: 899 FAKDASGEDNHLVEVITDKDGREIKAD 925
Score = 67.1 bits (161), Expect = 1e-09
Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 56/265 (21%)
Frame = +1
Query: 3007 DNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 3174
D+++ G G ++ DT +N+ D I+ G K GE I++ DV++L
Sbjct: 605 DDIVYSGAGSSEVFAGEGHDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 662
Query: 3175 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIVF-------------- 3294
+E ++ + +G + I+ +D+ G + +E+++
Sbjct: 663 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 722
Query: 3295 ----ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEG 3462
ADG + G+D + G QG D +N L G
Sbjct: 723 IFHGADGNDYIE--GNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTG 780
Query: 3463 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT------------------YLFNQGD 3588
G+G+D L+ A N+LSGGTGDD LYG D Y++ Q
Sbjct: 781 GSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYRQNY 838
Query: 3589 GHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDSIRLKDW 3738
GH TI ++GG + I D+ + G D++++ N + I K+W
Sbjct: 839 GHHTIADEGGKGDRLHLSDISFDDIAFKKVGNDLIMNKAINGALSFNESNDVNGITFKNW 898
Query: 3739 LTSNGTRNHSADIEQIVFADG 3801
+ + + +E I DG
Sbjct: 899 FAKDASGEDNHLVEVITDKDG 919
Score = 60.5 bits (144), Expect = 1e-07
Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 54/265 (20%)
Frame = +1
Query: 3505 DNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 3672
D+++ G G ++ DT +N+ D I+ G K GE I++ DV++L
Sbjct: 605 DDIVYSGAGSSEVFAGEGHDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 662
Query: 3673 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIV-------FADGTLWT 3813
+E ++ + +G + I+ +D+ G + +E+++ F G
Sbjct: 663 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 722
Query: 3814 PEXXXXXXXXXXXXXXNDTL---------KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGA 3966
ND L G QG D +N L GG+
Sbjct: 723 IFHGADGNDYIEGNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGS 782
Query: 3967 GDDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------YLFNKGDGH 4092
G+D L+ A N+L GGTGDD LYG D Y++ + GH
Sbjct: 783 GNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYRQNYGH 840
Query: 4093 DTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDSIRLKDWLT 4242
TI ++GG + I D+ + G D++++ N + I K+W
Sbjct: 841 HTIADEGGKGDRLHLSDISFDDIAFKKVGNDLIMNKAINGALSFNESNDVNGITFKNWFA 900
Query: 4243 SNGTRNHSADIEQIVFADG 4299
+ + + +E I DG
Sbjct: 901 KDASGEDNHLVEVITDKDG 919
Score = 58.2 bits (138), Expect = 6e-07
Identities = 41/119 (34%), Positives = 62/119 (51%), Gaps = 28/119 (23%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG+GND L+ A N+L GGTGDD LYG D Y
Sbjct: 775 NNYLTGGSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIY 832
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDS 3222
++ Q GH TI ++GG + I D+ + G D++++ N +
Sbjct: 833 VYRQNYGHHTIADEGGKGDRLHLSDISFDDIAFKKVGNDLIMNKAINGALSFNESNDVNG 892
Query: 3223 IRLKDWLTSNGTRNHSADIEQIVFADG 3303
I K+W + + + +E I DG
Sbjct: 893 ITFKNWFAKDASGEDNHLVEVITDKDG 919
Score = 44.1 bits (102), Expect = 0.010
Identities = 60/228 (26%), Positives = 89/228 (38%), Gaps = 4/228 (1%)
Frame = +1
Query: 3016 LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 3195
LIGG DD G F D +F+ DG+D I G D+L +G D +G D +
Sbjct: 706 LIGGKHDDEFKGGKFND--IFHGADGNDYIEGNYGNDRLYGDDG---DDYISGGQGDDQL 760
Query: 3196 LDLGNGHDSIRLKD---WLTS-NGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPG 3363
G+G+D + D +LT +G A + + GT G
Sbjct: 761 FG-GSGNDKLSGGDGNNYLTGGSGNDELQAHGAYNILSGGTGDDKLYGGGGIDLLDGGEG 819
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
ND L G G DI EGG GD L +S S D++ G+D +
Sbjct: 820 NDYLNGGFGNDIYVYRQNYGHHTIAD-----EGGKGDR-LHLSDISFDDIAFKKVGNDLI 873
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLD 3699
A FN+ + + I + K GE +V ++G+++ D
Sbjct: 874 MNKAINGALSFNESNDVNGITFKNWFAKDASGEDNHLVEVITDKDGREIKAD 925
>gi|126356|sp|P16535|LKA1_PASHA LEUKOTOXIN FROM SEROTYPE A1 >gi|150494
(M20730) LktA protein [Pasteurella haemolytica]
Length = 953
Score = 68.7 bits (165), Expect = 4e-10
Identities = 47/153 (30%), Positives = 80/153 (51%), Gaps = 14/153 (9%)
Frame = +1
Query: 4360 NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 4539
ND KG + ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 4540 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
+G D ++ KGDG+D I + G DKL F + + K+ F + +L ++ N +++V
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSF-SDSNLKDLTFEKVKHNL-VITNSKKEKV 835
Query: 4720 TVAGWFNGS-------------GHQVESLVFQDG-TVLSAEVERLIA 4818
T+ WF + ++E ++ Q+G + S +V+ LIA
Sbjct: 836 TIQNWFREADFAKEVPNYKATKDEKIEEIIGQNGERITSKQVDDLIA 882
Score = 58.6 bits (139), Expect = 5e-07
Identities = 33/96 (34%), Positives = 47/96 (48%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND KG + D ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGIL 4149
+G D ++ KGDG+D I + G DKL F + L
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSFSDSNL 813
Score = 58.2 bits (138), Expect = 6e-07
Identities = 32/96 (33%), Positives = 47/96 (48%)
Frame = +1
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
ND KG + D ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
+G D ++ +GDG+D I + G DKL F + L
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSFSDSNL 813
Score = 51.9 bits (122), Expect = 4e-05
Identities = 26/69 (37%), Positives = 41/69 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D+L + D+ + GG G+D L+G D ++ +GDG+D I + G D
Sbjct: 747 NDRLFGGKGDDILDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIITDSDGND 804
Query: 3127 KLVFGEGIL 3153
KL F + L
Sbjct: 805 KLSFSDSNL 813
Score = 41.8 bits (96), Expect = 0.050
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG 3117
++E N+ Y++ D + +IG + +D GS F D FN GDG DTI
Sbjct: 688 KIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDA--FNGGDGVDTIDGND 745
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 3225
G D+L G+G D +LD GNG D I
Sbjct: 746 GNDRLFGGKG-------------DDILDGGNGDDFI 768
>gi|150513 (M24197) leukotoxin membrane protein (LktA) [Pasteurella
haemolytica]
Length = 953
Score = 68.7 bits (165), Expect = 4e-10
Identities = 47/153 (30%), Positives = 80/153 (51%), Gaps = 14/153 (9%)
Frame = +1
Query: 4360 NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 4539
ND KG + ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIYGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 4540 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
+G D ++ KGDG+D I + G DKL F + + K+ F + +L ++ N +++V
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSF-SDSNLKDLTFEKVKHNL-VITNSKKEKV 835
Query: 4720 TVAGWFNGS-------------GHQVESLVFQDG-TVLSAEVERLIA 4818
T+ WF + ++E ++ Q+G + S +V+ LIA
Sbjct: 836 TIQNWFREADFAKEVPNYKATKDEKIEEIIGQNGERITSKQVDDLIA 882
Score = 58.6 bits (139), Expect = 5e-07
Identities = 33/96 (34%), Positives = 47/96 (48%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND KG + D ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIYGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGIL 4149
+G D ++ KGDG+D I + G DKL F + L
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSFSDSNL 813
Score = 58.2 bits (138), Expect = 6e-07
Identities = 32/96 (33%), Positives = 47/96 (48%)
Frame = +1
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
ND KG + D ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIYGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
+G D ++ +GDG+D I + G DKL F + L
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSFSDSNL 813
Score = 51.9 bits (122), Expect = 4e-05
Identities = 26/69 (37%), Positives = 41/69 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D+L + D+ + GG G+D L+G D ++ +GDG+D I + G D
Sbjct: 747 NDRLFGGKGDDILDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIITDSDGND 804
Query: 3127 KLVFGEGIL 3153
KL F + L
Sbjct: 805 KLSFSDSNL 813
Score = 42.6 bits (98), Expect = 0.029
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG 3117
++E N+ Y++ D + +IG + +D GS F D FN GDG DTI
Sbjct: 688 KIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDA--FNGGDGVDTIYGND 745
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 3225
G D+L G+G D +LD GNG D I
Sbjct: 746 GNDRLFGGKG-------------DDILDGGNGDDFI 768
>gi|97194|pir||B30169 leukotoxin A - Pasteurella haemolytica (serotype
1)
Length = 953
Score = 68.7 bits (165), Expect = 4e-10
Identities = 47/153 (30%), Positives = 80/153 (51%), Gaps = 14/153 (9%)
Frame = +1
Query: 4360 NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 4539
ND KG + ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIYGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 4540 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
+G D ++ KGDG+D I + G DKL F + + K+ F + +L ++ N +++V
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSF-SDSNLKDLTFEKVKHNL-VITNSKKEKV 835
Query: 4720 TVAGWFNGS-------------GHQVESLVFQDG-TVLSAEVERLIA 4818
T+ WF + ++E ++ Q+G + S +V+ LIA
Sbjct: 836 TIQNWFREADFAKEVPNYKATKDEKIEEIIGQNGERITSKQVDDLIA 882
Score = 58.6 bits (139), Expect = 5e-07
Identities = 33/96 (34%), Positives = 47/96 (48%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND KG + D ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIYGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGIL 4149
+G D ++ KGDG+D I + G DKL F + L
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSFSDSNL 813
Score = 58.2 bits (138), Expect = 6e-07
Identities = 32/96 (33%), Positives = 47/96 (48%)
Frame = +1
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
ND KG + D ++RL GG GDD+L + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIYGNDGNDRLFGGKGDDILDGG--NGDDFIDGGKGNDLL 777
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
+G D ++ +GDG+D I + G DKL F + L
Sbjct: 778 HGGKGDDIFVHRKGDGNDIITDSDGNDKLSFSDSNL 813
Score = 51.9 bits (122), Expect = 4e-05
Identities = 26/69 (37%), Positives = 41/69 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D+L + D+ + GG G+D L+G D ++ +GDG+D I + G D
Sbjct: 747 NDRLFGGKGDDILDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIITDSDGND 804
Query: 3127 KLVFGEGIL 3153
KL F + L
Sbjct: 805 KLSFSDSNL 813
Score = 42.6 bits (98), Expect = 0.029
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG 3117
++E N+ Y++ D + +IG + +D GS F D FN GDG DTI
Sbjct: 688 KIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDA--FNGGDGVDTIYGND 745
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 3225
G D+L G+G D +LD GNG D I
Sbjct: 746 GNDRLFGGKG-------------DDILDGGNGDDFI 768
>gi|79293|pir||A37205 leukotoxin A - Actinobacillus
actinomycetemcomitans >gi|38645|emb|CAA34731| (X16829)
leukotoxin [Actinobacillus actinomycetemcomitans]
Length = 1055
Score = 68.3 bits (164), Expect = 5e-10
Identities = 67/243 (27%), Positives = 92/243 (37%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
+IG T D YGS F D +F+ DG D I G D+L +G+
Sbjct: 720 IIGSTLRDKFYGSKFND--VFHGHDGDDLIYGYDGDDRL-YGD----------------- 759
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTL 4371
NG+D I H ++ GND L
Sbjct: 760 ----NGNDEI-------------HGGQGNDKLYGGA-------------------GNDRL 783
Query: 4372 KGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 4551
G S+ L GG+G+D L + D++L GG GDD L G
Sbjct: 784 FGEYGNNYLDGGEGDDHLEGGNGSDILRGGSGNDKLFGN--QGDDLLDGGEGDDQLAGGE 841
Query: 4552 FADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG 4731
D Y++ K GH TI E G + A ++ K+ F R+G+DL LL + VT G
Sbjct: 842 GNDIYVYRKEYGHHTITEHSGDKDKLSLANINLKDVSFERNGNDL-LLKTNNRTAVTFKG 900
Query: 4732 WFN 4740
WF+
Sbjct: 901 WFS 903
Score = 62.5 bits (149), Expect = 3e-08
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL-------KVSYWSADNVLS 3519
GND L G G D + LEGG G D+L K+ D++L
Sbjct: 770 GNDKLYGGAGNDRLFGEYGNNYLDGGEGDDHLEGGNGSDILRGGSGNDKLFGNQGDDLLD 829
Query: 3520 GGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLD 3699
GG GDD L G D Y++ + GH TI E G + I DV R G D++L
Sbjct: 830 GGEGDDQLAGGEGNDIYVYRKEYGHHTITEHSGDKDKLSLANINLKDVSFERNGNDLLLK 889
Query: 3700 LGNGHDSIRLKDWLTSNGTRNHSADIEQ 3783
N ++ K W + N SA +++
Sbjct: 890 T-NNRTAVTFKGWFSK---PNSSAGLDE 913
Score = 60.5 bits (144), Expect = 1e-07
Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL-------KVSYWSADNVLIG 4020
ND L G G D + LEGG G D+L K+ D++L G
Sbjct: 771 NDKLYGGAGNDRLFGEYGNNYLDGGEGDDHLEGGNGSDILRGGSGNDKLFGNQGDDLLDG 830
Query: 4021 GTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL 4200
G GDD L G D Y++ K GH TI E G + I DV R G D++L
Sbjct: 831 GEGDDQLAGGEGNDIYVYRKEYGHHTITEHSGDKDKLSLANINLKDVSFERNGNDLLLKT 890
Query: 4201 GNGHDSIRLKDWLTSNGTRNHSADIEQ 4281
N ++ K W + N SA +++
Sbjct: 891 -NNRTAVTFKGWFSK---PNSSAGLDE 913
Score = 56.2 bits (133), Expect = 2e-06
Identities = 38/113 (33%), Positives = 55/113 (48%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
S+ L GG+GND L + D++L GG GDD L G D Y++ + GH TI E G
Sbjct: 807 SDILRGGSGNDKLFGN--QGDDLLDGGEGDDQLAGGEGNDIYVYRKEYGHHTITEHSGDK 864
Query: 3127 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQ 3285
+ I DV R G D++L N ++ K W + N SA +++
Sbjct: 865 DKLSLANINLKDVSFERNGNDLLLKT-NNRTAVTFKGWFSK---PNSSAGLDE 913
Score = 36.0 bits (81), Expect = 2.9
Identities = 34/101 (33%), Positives = 51/101 (49%), Gaps = 8/101 (7%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA--------FADTYLFNKGDGHDTIIEQG 4611
G GDD L + ++ + GG G+D LYG A + + YL + G+G D +
Sbjct: 749 GYDGDDRLYGD--NGNDEIHGGQGNDKLYGGAGNDRLFGEYGNNYL-DGGEGDDHLEGGN 805
Query: 4612 GTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQV 4758
G+D L G+G + F GDD L +G E +AG G G+ +
Sbjct: 806 GSDILRGGSG---NDKLFGNQGDD---LLDGGEGDDQLAG---GEGNDI 845
Score = 34.8 bits (78), Expect = 6.5
Identities = 61/235 (25%), Positives = 94/235 (39%), Gaps = 29/235 (12%)
Frame = +1
Query: 3019 IGGTGDDTLYGSAFADTYLFNQGDGHDTI-IEQGGTDKLVF------------------G 3141
+G D GS + + N GDG+D + +G T L G
Sbjct: 614 LGAKDDYVFVGSG---STIVNAGDGYDVVDYSKGRTGALTIDGRNATKAGQYKVERDLSG 670
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSA--DIEQIVFADGTLWT 3315
+L V + V DL + + +L + T+ G + H +E+I+ TL
Sbjct: 671 TQVLQETVSKQETKRGKVTDLLE-YRNYKLDYYYTNKGFKAHDELNSVEEII--GSTLRD 727
Query: 3316 PEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3495
G+D + G+ G D RL G G+D +
Sbjct: 728 KFYGSKFNDVFHGHDGDDLIYGYDGDD------------------RLYGDNGNDEIH--- 766
Query: 3496 WSADNVLSGGTGDDTLYGSA--------FADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
GG G+D LYG A + + YL + G+G D + G+D L G G
Sbjct: 767 --------GGQGNDKLYGGAGNDRLFGEYGNNYL-DGGEGDDHLEGGNGSDILRGGSG-- 815
Query: 3652 AADVRLLREGQDVVLDLGNGHDSI 3723
+ +L D +LD G G D +
Sbjct: 816 --NDKLFGNQGDDLLDGGEGDDQL 837
>gi|525329 (U12572) HlyA [Escherichia coli]
Length = 758
Score = 67.9 bits (163), Expect = 7e-10
Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 58/257 (22%)
Frame = +1
Query: 3007 DNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 3174
D+V+ G G ++ DT +N+ D I+ G K GE I++ DV++L
Sbjct: 365 DDVVYSGAGSSEVFAGEGYDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 422
Query: 3175 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIVF-------------- 3294
+E ++ + +G + I+ +D+ G + +E+++
Sbjct: 423 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 482
Query: 3295 ----ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEG 3462
ADG + G+D + G QG D +N L G
Sbjct: 483 IFHGADGNDYIE--GNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTG 540
Query: 3463 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT------------------YLFNQGD 3588
G+G+D L+ A N+LSGGTGDD LYG D Y++ Q
Sbjct: 541 GSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNY 598
Query: 3589 GHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDSIRLKDW 3738
GH TI ++GG + I D+ R G D++++ N + I K+W
Sbjct: 599 GHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNW 658
Query: 3739 LT--SNGTRNHSADI 3777
++G NH ++
Sbjct: 659 FAKDASGADNHLVEV 673
Score = 67.5 bits (162), Expect = 9e-10
Identities = 78/266 (29%), Positives = 125/266 (46%), Gaps = 61/266 (22%)
Frame = +1
Query: 4003 DNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 4170
D+V+ G G ++ DT +NK D I+ G K GE I++ DV++L
Sbjct: 365 DDVVYSGAGSSEVFAGEGYDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 422
Query: 4171 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIVF-------------- 4290
+E ++ + +G + I+ +D+ G + +E+++
Sbjct: 423 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 482
Query: 4291 ----ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEG 4458
ADG + G+D + G Q +N L G
Sbjct: 483 IFHGADGNDYIE--GNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTG 540
Query: 4459 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT------------------YLFNKGD 4584
G+G+D L+ A N+LSGGTGDD LYG D Y++ +
Sbjct: 541 GSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNY 598
Query: 4585 GHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDL--------SLLFNGSED--QVTVAGW 4734
GH TI ++GG + + +S + F R G+DL L FN S D +T W
Sbjct: 599 GHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNW 658
Query: 4735 F-----NGSGHQVESLVFQDGTVLSAE 4800
F H VE + +DG + +
Sbjct: 659 FAKDASGADNHLVEVITDKDGREIKVD 685
Score = 61.3 bits (146), Expect = 7e-08
Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 56/257 (21%)
Frame = +1
Query: 3505 DNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 3672
D+V+ G G ++ DT +N+ D I+ G K GE I++ DV++L
Sbjct: 365 DDVVYSGAGSSEVFAGEGYDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 422
Query: 3673 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIV-------FADGTLWT 3813
+E ++ + +G + I+ +D+ G + +E+++ F G
Sbjct: 423 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 482
Query: 3814 PEXXXXXXXXXXXXXXNDTL---------KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGA 3966
ND L G QG D +N L GG+
Sbjct: 483 IFHGADGNDYIEGNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGS 542
Query: 3967 GDDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------YLFNKGDGH 4092
G+D L+ A N+L GGTGDD LYG D Y++ + GH
Sbjct: 543 GNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGH 600
Query: 4093 DTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDSIRLKDWLT 4242
TI ++GG + I D+ R G D++++ N + I K+W
Sbjct: 601 HTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFA 660
Query: 4243 --SNGTRNHSADI 4275
++G NH ++
Sbjct: 661 KDASGADNHLVEV 673
Score = 58.6 bits (139), Expect = 5e-07
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 30/111 (27%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG+GND L+ A N+L GGTGDD LYG D Y
Sbjct: 535 NNYLTGGSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIY 592
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDS 3222
++ Q GH TI ++GG + I D+ R G D++++ N +
Sbjct: 593 VYGQNYGHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNG 652
Query: 3223 IRLKDWLT--SNGTRNHSADI 3279
I K+W ++G NH ++
Sbjct: 653 ITFKNWFAKDASGADNHLVEV 673
Score = 36.7 bits (83), Expect = 1.7
Identities = 60/248 (24%), Positives = 85/248 (34%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+EG GND L D+ + GG GDD L+G G G+D + G + L
Sbjct: 493 IEGNYGNDRLYGD--DGDDYISGGQGDDQLFG-----------GSGNDKLSGGDGNNYLT 539
Query: 3136 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWT 3315
G G + L G +L G G D L G I DG
Sbjct: 540 GGSG----NDELQAHGAYNILSGGTGDDK------LYGGG---------GIDLLDG---- 576
Query: 3316 PEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3495
GND L G G DI EGG GD L +S
Sbjct: 577 -------------GEGNDYLNGGFGNDIYVYGQNYGHHTIAD-----EGGKGDR-LHLSD 617
Query: 3496 WSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLR 3675
S D++ G+D + A FN+ + + I + K G +V +
Sbjct: 618 ISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDK 677
Query: 3676 EGQDVVLD 3699
+G+++ +D
Sbjct: 678 DGREIKVD 685
>gi|126355|sp|P16462|LKTA_ACTAC LEUKOTOXIN >gi|141834 (M27399)
leukotoxin (LtA) [Actinobacillus actinomycetemcomitans]
Length = 1050
Score = 67.9 bits (163), Expect = 7e-10
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVL-------KVSYWSADNVLS 4515
GND L G + LEGG G D+L K+ D++L
Sbjct: 770 GNDKLYGGAGNDRLFGEYGNNYLDGGEGDDHLEGGNGSDILRGGSGNDKLFGNQGDDLLD 829
Query: 4516 GGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLL 4695
GG GDD L G D Y++ K GH TI E G + A ++ K+ F R+G+DL LL
Sbjct: 830 GGEGDDQLAGGEGNDIYVYRKEYGHHTITEHSGDKDKLSLANINLKDVSFERNGNDL-LL 888
Query: 4696 FNGSEDQVTVAGWFN 4740
+ VT GWF+
Sbjct: 889 KTNNRTAVTFKGWFS 903
Score = 62.5 bits (149), Expect = 3e-08
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL-------KVSYWSADNVLS 3519
GND L G G D + LEGG G D+L K+ D++L
Sbjct: 770 GNDKLYGGAGNDRLFGEYGNNYLDGGEGDDHLEGGNGSDILRGGSGNDKLFGNQGDDLLD 829
Query: 3520 GGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLD 3699
GG GDD L G D Y++ + GH TI E G + I DV R G D++L
Sbjct: 830 GGEGDDQLAGGEGNDIYVYRKEYGHHTITEHSGDKDKLSLANINLKDVSFERNGNDLLLK 889
Query: 3700 LGNGHDSIRLKDWLTSNGTRNHSADIEQ 3783
N ++ K W + N SA +++
Sbjct: 890 T-NNRTAVTFKGWFSK---PNSSAGLDE 913
Score = 60.5 bits (144), Expect = 1e-07
Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL-------KVSYWSADNVLIG 4020
ND L G G D + LEGG G D+L K+ D++L G
Sbjct: 771 NDKLYGGAGNDRLFGEYGNNYLDGGEGDDHLEGGNGSDILRGGSGNDKLFGNQGDDLLDG 830
Query: 4021 GTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL 4200
G GDD L G D Y++ K GH TI E G + I DV R G D++L
Sbjct: 831 GEGDDQLAGGEGNDIYVYRKEYGHHTITEHSGDKDKLSLANINLKDVSFERNGNDLLLKT 890
Query: 4201 GNGHDSIRLKDWLTSNGTRNHSADIEQ 4281
N ++ K W + N SA +++
Sbjct: 891 -NNRTAVTFKGWFSK---PNSSAGLDE 913
Score = 56.2 bits (133), Expect = 2e-06
Identities = 38/113 (33%), Positives = 55/113 (48%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
S+ L GG+GND L + D++L GG GDD L G D Y++ + GH TI E G
Sbjct: 807 SDILRGGSGNDKLFGN--QGDDLLDGGEGDDQLAGGEGNDIYVYRKEYGHHTITEHSGDK 864
Query: 3127 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQ 3285
+ I DV R G D++L N ++ K W + N SA +++
Sbjct: 865 DKLSLANINLKDVSFERNGNDLLLKT-NNRTAVTFKGWFSK---PNSSAGLDE 913
Score = 36.0 bits (81), Expect = 2.9
Identities = 34/101 (33%), Positives = 51/101 (49%), Gaps = 8/101 (7%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA--------FADTYLFNKGDGHDTIIEQG 4611
G GDD L + ++ + GG G+D LYG A + + YL + G+G D +
Sbjct: 749 GYDGDDRLYGD--NGNDEIHGGQGNDKLYGGAGNDRLFGEYGNNYL-DGGEGDDHLEGGN 805
Query: 4612 GTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQV 4758
G+D L G+G + F GDD L +G E +AG G G+ +
Sbjct: 806 GSDILRGGSG---NDKLFGNQGDD---LLDGGEGDDQLAG---GEGNDI 845
>gi|3337015|dbj|BAA31774.1| (AB011549) Hemolysin A [Escherichia coli]
>gi|3822162 (AF074613) hemolysin toxin protein
[Escherichia coli O157:H7]
Length = 998
Score = 67.9 bits (163), Expect = 7e-10
Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 58/257 (22%)
Frame = +1
Query: 3007 DNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 3174
D+V+ G G ++ DT +N+ D I+ G K GE I++ DV++L
Sbjct: 605 DDVVYSGAGSSEVFAGEGYDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 662
Query: 3175 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIVF-------------- 3294
+E ++ + +G + I+ +D+ G + +E+++
Sbjct: 663 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 722
Query: 3295 ----ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEG 3462
ADG + G+D + G QG D +N L G
Sbjct: 723 IFHGADGNDYIE--GNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTG 780
Query: 3463 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT------------------YLFNQGD 3588
G+G+D L+ A N+LSGGTGDD LYG D Y++ Q
Sbjct: 781 GSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNY 838
Query: 3589 GHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDSIRLKDW 3738
GH TI ++GG + I D+ R G D++++ N + I K+W
Sbjct: 839 GHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNW 898
Query: 3739 LT--SNGTRNHSADI 3777
++G NH ++
Sbjct: 899 FAKDASGADNHLVEV 913
Score = 67.5 bits (162), Expect = 9e-10
Identities = 78/266 (29%), Positives = 125/266 (46%), Gaps = 61/266 (22%)
Frame = +1
Query: 4003 DNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 4170
D+V+ G G ++ DT +NK D I+ G K GE I++ DV++L
Sbjct: 605 DDVVYSGAGSSEVFAGEGYDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 662
Query: 4171 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIVF-------------- 4290
+E ++ + +G + I+ +D+ G + +E+++
Sbjct: 663 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 722
Query: 4291 ----ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEG 4458
ADG + G+D + G Q +N L G
Sbjct: 723 IFHGADGNDYIE--GNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTG 780
Query: 4459 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT------------------YLFNKGD 4584
G+G+D L+ A N+LSGGTGDD LYG D Y++ +
Sbjct: 781 GSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNY 838
Query: 4585 GHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDL--------SLLFNGSED--QVTVAGW 4734
GH TI ++GG + + +S + F R G+DL L FN S D +T W
Sbjct: 839 GHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNW 898
Query: 4735 F-----NGSGHQVESLVFQDGTVLSAE 4800
F H VE + +DG + +
Sbjct: 899 FAKDASGADNHLVEVITDKDGREIKVD 925
Score = 61.3 bits (146), Expect = 7e-08
Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 56/257 (21%)
Frame = +1
Query: 3505 DNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILA----ADVRLL 3672
D+V+ G G ++ DT +N+ D I+ G K GE I++ DV++L
Sbjct: 605 DDVVYSGAGSSEVFAGEGYDTVSYNKTDVGKLTIDATGASKP--GEYIVSKNMYGDVKVL 662
Query: 3673 REG-QDVVLDLGNGHDSIRLKDWLTSNGTRNHSA-----DIEQIV-------FADGTLWT 3813
+E ++ + +G + I+ +D+ G + +E+++ F G
Sbjct: 663 QEVVKEQEVSVGKRTEKIQYRDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFND 722
Query: 3814 PEXXXXXXXXXXXXXXNDTL---------KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGA 3966
ND L G QG D +N L GG+
Sbjct: 723 IFHGADGNDYIEGNYGNDRLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGS 782
Query: 3967 GDDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------YLFNKGDGH 4092
G+D L+ A N+L GGTGDD LYG D Y++ + GH
Sbjct: 783 GNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGH 840
Query: 4093 DTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDSIRLKDWLT 4242
TI ++GG + I D+ R G D++++ N + I K+W
Sbjct: 841 HTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFA 900
Query: 4243 --SNGTRNHSADI 4275
++G NH ++
Sbjct: 901 KDASGADNHLVEV 913
Score = 58.6 bits (139), Expect = 5e-07
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 30/111 (27%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG+GND L+ A N+L GGTGDD LYG D Y
Sbjct: 775 NNYLTGGSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIY 832
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDS 3222
++ Q GH TI ++GG + I D+ R G D++++ N +
Sbjct: 833 VYGQNYGHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNG 892
Query: 3223 IRLKDWLT--SNGTRNHSADI 3279
I K+W ++G NH ++
Sbjct: 893 ITFKNWFAKDASGADNHLVEV 913
Score = 36.7 bits (83), Expect = 1.7
Identities = 60/248 (24%), Positives = 85/248 (34%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+EG GND L D+ + GG GDD L+G G G+D + G + L
Sbjct: 733 IEGNYGNDRLYGD--DGDDYISGGQGDDQLFG-----------GSGNDKLSGGDGNNYLT 779
Query: 3136 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWT 3315
G G + L G +L G G D L G I DG
Sbjct: 780 GGSG----NDELQAHGAYNILSGGTGDDK------LYGGG---------GIDLLDG---- 816
Query: 3316 PEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3495
GND L G G DI EGG GD L +S
Sbjct: 817 -------------GEGNDYLNGGFGNDIYVYGQNYGHHTIAD-----EGGKGDR-LHLSD 857
Query: 3496 WSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLR 3675
S D++ G+D + A FN+ + + I + K G +V +
Sbjct: 858 ISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDK 917
Query: 3676 EGQDVVLD 3699
+G+++ +D
Sbjct: 918 DGREIKVD 925
>gi|4455065|gb|AAD21057| (AF119150) RtxA protein [Vibrio cholerae]
Length = 4545
Score = 67.1 bits (161), Expect = 1e-09
Identities = 74/279 (26%), Positives = 110/279 (38%), Gaps = 8/279 (2%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4122
+N GG GDDV + N+ GG G+D G + GDG+DT + G +
Sbjct: 4207 NNNFWGGRGDDVFYAT--GKSNIFTGGEGNDM--GVLMGRENMMFGGDGNDTAVVAGRIN 4262
Query: 4123 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGT 4302
+ G G D + G+ +D G+G D + + N R + D + G
Sbjct: 4263 HVFLGAG----DDQSFVFGEGGEIDTGSGRDYVVT----SGNFNRVDTGDDQDYSVTIGN 4314
Query: 4303 LWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLK 4482
E GND NR+ GAG+DV+K
Sbjct: 4315 NNQVELGA----------GND------------------FANIFGNYNRINAGAGNDVVK 4346
Query: 4483 VSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEAR 4662
+ + A VL+GG GDD L +A + FN G+G D ++ G + G +
Sbjct: 4347 LMGYHA--VLNGGDGDDHLIATAISKFSQFNGGEGRDLMVLGGYQNTFKGGTDVD----S 4400
Query: 4663 FTRSGDDLSLLFNG--SEDQVTVAG------WFNGSGHQVESLVFQD 4779
F SGD + L SED + G WF SG+ + + +D
Sbjct: 4401 FVVSGDVIDNLVEDIRSEDNIVFNGIDWQKLWFERSGYDXKLSILRD 4447
Score = 59.3 bits (141), Expect = 3e-07
Identities = 70/269 (26%), Positives = 110/269 (40%), Gaps = 9/269 (3%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
+N GG G+DV + N+ GG G+D G + GDG+DT + G +
Sbjct: 4207 NNNFWGGRGDDVFYAT--GKSNIFTGGEGNDM--GVLMGRENMMFGGDGNDTAVVAGRIN 4262
Query: 3127 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGT 3306
+ G G D + G+ +D G+G D + + N R + D + G
Sbjct: 4263 HVFLGAG----DDQSFVFGEGGEIDTGSGRDYVVT----SGNFNRVDTGDDQDYSVTIGN 4314
Query: 3307 LWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLK 3486
N+ ++ G D NR+ GAG+DV+K
Sbjct: 4315 -------------------NNQVELGAGNDFANIFGNY---------NRINAGAGNDVVK 4346
Query: 3487 VSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTII-------EQGGT--DKLVFG 3639
+ + A VL+GG GDD L +A + FN G+G D ++ +GGT D V
Sbjct: 4347 LMGYHA--VLNGGDGDDHLIATAISKFSQFNGGEGRDLMVLGGYQNTFKGGTDVDSFVVS 4404
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG 3753
++ V +R ++V NG D +L W +G
Sbjct: 4405 GDVIDNLVEDIRSEDNIVF---NGIDWQKL--WFERSG 4437
Score = 47.6 bits (111), Expect = 9e-04
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTII------- 3108
NR+ GAGNDV+K+ + A VL GG GDD L +A + FN G+G D ++
Sbjct: 4334 NRINAGAGNDVVKLMGYHA--VLNGGDGDDHLIATAISKFSQFNGGEGRDLMVLGGYQNT 4391
Query: 3109 EQGGT--DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG 3255
+GGT D V ++ V +R ++V NG D +L W +G
Sbjct: 4392 FKGGTDVDSFVVSGDVIDNLVEDIRSEDNIVF---NGIDWQKL--WFERSG 4437
>gi|1708214|sp|P55117|LKAA_PASHA LEUKOTOXIN FROM SEROTYPE T10
>gi|2144675|pir||A35254 leukotoxin A - Pasteurella
haemolytica (serotype T10) >gi|400425|emb|CAA81206|
(Z26247) leukotoxin A [Pasteurella haemolytica]
Length = 955
Score = 66.3 bits (159), Expect = 2e-09
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Frame = +1
Query: 4360 NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 4539
ND KG + ++RL GG GDD++ + D+ + GG G+D L
Sbjct: 722 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLL 779
Query: 4540 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
+G D ++ +GDG+D+I E G DKL F + + K+ F + L ++ N +++V
Sbjct: 780 HGGKGDDIFVHRQGDGNDSITESEGNDKLSF-SDSNLKDLTFEKVNHHL-VITNTKQEKV 837
Query: 4720 TVAGWFNGS-------------GHQVESLVFQDG-TVLSAEVERLI 4815
T+ WF + ++E ++ Q+G + S +V+ LI
Sbjct: 838 TIQNWFREAEFAKTIQNYVATRDDKIEEIIGQNGERITSKQVDELI 883
Score = 60.5 bits (144), Expect = 1e-07
Identities = 33/96 (34%), Positives = 48/96 (49%)
Frame = +1
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
ND KG + D ++RL GG GDD++ + D+ + GG G+D L
Sbjct: 722 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLL 779
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
+G D ++ QGDG+D+I E G DKL F + L
Sbjct: 780 HGGKGDDIFVHRQGDGNDSITESEGNDKLSFSDSNL 815
Score = 57.8 bits (137), Expect = 8e-07
Identities = 32/96 (33%), Positives = 48/96 (49%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND KG + D ++RL GG GDD++ + D+ + GG G+D L
Sbjct: 722 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLL 779
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGIL 4149
+G D ++ +GDG+D+I E G DKL F + L
Sbjct: 780 HGGKGDDIFVHRQGDGNDSITESEGNDKLSFSDSNL 815
Score = 54.3 bits (128), Expect = 9e-06
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D++ + D+ + GG G+D L+G D ++ QGDG+D+I E G D
Sbjct: 749 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 806
Query: 3127 KLVFGEGIL 3153
KL F + L
Sbjct: 807 KLSFSDSNL 815
Score = 41.0 bits (94), Expect = 0.086
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG 3117
++E N+ Y++ D + +IG + +D GS F D FN GDG DTI
Sbjct: 690 KIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDA--FNGGDGVDTIDGND 747
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 3225
G D+L G+G D ++D GNG D I
Sbjct: 748 GNDRLFGGKG-------------DDIIDGGNGDDFI 770
>gi|6009631|dbj|BAA84997.1| (AB025596) lipase [Pseudomonas sp. MIS38]
Length = 617
Score = 66.0 bits (158), Expect = 3e-09
Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 14/242 (5%)
Frame = +1
Query: 3502 ADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREG 3681
+++++ GG+G+D L G A DT F G G++ I+ G + L + + D
Sbjct: 376 SNDLIQGGSGNDYLEGRAGNDT--FRDGGGYNVILGGAGNNTLDLQKSVNTFDFA----- 428
Query: 3682 QDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFAD-GTLW---TPEXXXXXXXXXX 3849
+G ++ ++D +NG + + DI IV + G LW +
Sbjct: 429 -------NDGAGNLYVRD---ANGGISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASGL 478
Query: 3850 XXXXNDT-----LKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVL 4014
N T +KG G D ++ L GG G+DV
Sbjct: 479 KVGSNVTQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLIGGVGNDVF----------- 527
Query: 4015 IGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF--GEGILAAD---VRLLREG 4179
+GG G+D + ADT+LFN G D ++ DKLVF +G+L D G
Sbjct: 528 VGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKLVFLGVQGVLPNDDFRAHASMVG 587
Query: 4180 QDVVLDLGNGHDSIRL 4227
QD VL G DS+ L
Sbjct: 588 QDTVLKFGG--DSVTL 601
Score = 53.9 bits (127), Expect = 1e-05
Identities = 64/244 (26%), Positives = 103/244 (41%), Gaps = 14/244 (5%)
Frame = +1
Query: 4000 ADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREG 4179
+++++ GG+G+D L G A DT F G G++ I+ G + L + + D
Sbjct: 376 SNDLIQGGSGNDYLEGRAGNDT--FRDGGGYNVILGGAGNNTLDLQKSVNTFDFA----- 428
Query: 4180 QDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFAD-GTLWT--PEXXXXXXXXXXX 4350
+G ++ ++D +NG + + DI IV + G LW +
Sbjct: 429 -------NDGAGNLYVRD---ANGGISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASGL 478
Query: 4351 XPGND------TLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVL 4512
G++ ++KG ++ L GG G+DV
Sbjct: 479 KVGSNVTQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLIGGVGNDVFV---------- 528
Query: 4513 SGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF--GAGLSRKE---ARFTRSG 4677
GG G+D + ADT+LFN G D ++ DKLVF G+ + A + G
Sbjct: 529 -GGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKLVFLGVQGVLPNDDFRAHASMVG 587
Query: 4678 DDLSLLFNGSEDQVTVAG 4731
D L F G D VT+ G
Sbjct: 588 QDTVLKFGG--DSVTLVG 603
Score = 51.9 bits (122), Expect = 4e-05
Identities = 68/242 (28%), Positives = 97/242 (39%), Gaps = 12/242 (4%)
Frame = +1
Query: 3004 ADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREG 3183
+++++ GG+G+D L G A DT F G G++ I+ G + L + + D G
Sbjct: 376 SNDLIQGGSGNDYLEGRAGNDT--FRDGGGYNVILGGAGNNTLDLQKSVNTFDFANDGAG 433
Query: 3184 QDVVLDLGNGHDSIRLKDWLTSNGTRN-------HSADIEQIVFADGTLWTPEXXXXXXX 3342
V D G I + + S T+ D+ V A G L
Sbjct: 434 NLYVRDANGG---ISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASG-LKVGSNVTQYDA 489
Query: 3343 XXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSG 3522
G DTLK G D ++ GGAG+D+++ SG
Sbjct: 490 SVKGTNGADTLKAHAGGDWLFGLDGNDHLIGGVGNDVFVGGAGNDLME----------SG 539
Query: 3523 GTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVF--GEGILAAD---VRLLREGQD 3687
G ADT+LFN G D ++ DKLVF +G+L D GQD
Sbjct: 540 GG----------ADTFLFNGAFGQDRVVGFTSNDKLVFLGVQGVLPNDDFRAHASMVGQD 589
Query: 3688 VVLDLGNGHDSIRL 3729
VL G DS+ L
Sbjct: 590 TVLKFGG--DSVTL 601
Score = 50.4 bits (118), Expect = 1e-04
Identities = 36/95 (37%), Positives = 47/95 (48%), Gaps = 5/95 (5%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++ L GG GNDV +GG G+D + ADT+LFN G D ++ D
Sbjct: 515 NDHLIGGVGNDVF-----------VGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSND 563
Query: 3127 KLVF--GEGILAAD---VRLLREGQDVVLDLGNGHDSIRL 3231
KLVF +G+L D GQD VL G DS+ L
Sbjct: 564 KLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGG--DSVTL 601
>gi|1524027|emb|CAA63849| (X94129) EHEC-hemolysin [Escherichia coli]
Length = 998
Score = 65.6 bits (157), Expect = 4e-09
Identities = 47/139 (33%), Positives = 70/139 (49%), Gaps = 30/139 (21%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G+D + G QG D +N L GG+G+D L+ A N+LSGGTGDD
Sbjct: 747 GDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDK 804
Query: 3541 LYGSAFADT------------------YLFNQGDGHDTIIEQGGTDKLVFGEGILAADVR 3666
LYG D Y++ Q GH TI ++GG + I D+
Sbjct: 805 LYGGGGIDLLDGGEGNDYLNGGFGNDIYVYRQNYGHHTIADEGGKGDRLHLSDISFDDIA 864
Query: 3667 LLREGQDVVLDL----------GNGHDSIRLKDWLT--SNGTRNHSADI 3777
R G D++++ N + I K+W ++G NH ++
Sbjct: 865 FKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEV 913
Score = 63.6 bits (152), Expect = 1e-08
Identities = 51/148 (34%), Positives = 73/148 (48%), Gaps = 33/148 (22%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 4536
G+D + G Q +N L GG+G+D L+ A N+LSGGTGDD
Sbjct: 747 GDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDK 804
Query: 4537 LYGSAFADT------------------YLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEAR 4662
LYG D Y++ + GH TI ++GG + + +S +
Sbjct: 805 LYGGGGIDLLDGGEGNDYLNGGFGNDIYVYRQNYGHHTIADEGGKGDRLHLSDISFDDIA 864
Query: 4663 FTRSGDDL--------SLLFNGSED--QVTVAGWF-----NGSGHQVESLVFQDGTVLSA 4797
F R G+DL L FN S D +T WF H VE + +DG +
Sbjct: 865 FKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDKDGREIKV 924
Query: 4798 E 4800
+
Sbjct: 925 D 925
Score = 59.3 bits (141), Expect = 3e-07
Identities = 44/138 (31%), Positives = 68/138 (48%), Gaps = 30/138 (21%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
+D + G QG D +N L GG+G+D L+ A N+L GGTGDD L
Sbjct: 748 DDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDKL 805
Query: 4042 YGSAFADT------------------YLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRL 4167
YG D Y++ + GH TI ++GG + I D+
Sbjct: 806 YGGGGIDLLDGGEGNDYLNGGFGNDIYVYRQNYGHHTIADEGGKGDRLHLSDISFDDIAF 865
Query: 4168 LREGQDVVLDL----------GNGHDSIRLKDWLT--SNGTRNHSADI 4275
R G D++++ N + I K+W ++G NH ++
Sbjct: 866 KRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEV 913
Score = 58.6 bits (139), Expect = 5e-07
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 30/111 (27%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG+GND L+ A N+L GGTGDD LYG D Y
Sbjct: 775 NNYLTGGSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIY 832
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDS 3222
++ Q GH TI ++GG + I D+ R G D++++ N +
Sbjct: 833 VYRQNYGHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNG 892
Query: 3223 IRLKDWLT--SNGTRNHSADI 3279
I K+W ++G NH ++
Sbjct: 893 ITFKNWFAKDASGADNHLVEV 913
Score = 36.7 bits (83), Expect = 1.7
Identities = 60/248 (24%), Positives = 85/248 (34%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+EG GND L D+ + GG GDD L+G G G+D + G + L
Sbjct: 733 IEGNYGNDRLYGD--DGDDYISGGQGDDQLFG-----------GSGNDKLSGGDGNNYLT 779
Query: 3136 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWT 3315
G G + L G +L G G D L G I DG
Sbjct: 780 GGSG----NDELQAHGAYNILSGGTGDDK------LYGGG---------GIDLLDG---- 816
Query: 3316 PEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3495
GND L G G DI EGG GD L +S
Sbjct: 817 -------------GEGNDYLNGGFGNDIYVYRQNYGHHTIAD-----EGGKGDR-LHLSD 857
Query: 3496 WSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLR 3675
S D++ G+D + A FN+ + + I + K G +V +
Sbjct: 858 ISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDK 917
Query: 3676 EGQDVVLD 3699
+G+++ +D
Sbjct: 918 DGREIKVD 925
>gi|1805762|emb|CAA60042| (X86087) EHEC-hlyA [Escherichia coli]
Length = 998
Score = 65.6 bits (157), Expect = 4e-09
Identities = 47/139 (33%), Positives = 70/139 (49%), Gaps = 30/139 (21%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G+D + G QG D +N L GG+G+D L+ A N+LSGGTGDD
Sbjct: 747 GDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDK 804
Query: 3541 LYGSAFADT------------------YLFNQGDGHDTIIEQGGTDKLVFGEGILAADVR 3666
LYG D Y++ Q GH TI ++GG + I D+
Sbjct: 805 LYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGHHTIADEGGKGDRLHLSDISFDDIA 864
Query: 3667 LLREGQDVVLDL----------GNGHDSIRLKDWLT--SNGTRNHSADI 3777
R G D++++ N + I K+W ++G NH ++
Sbjct: 865 FKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEV 913
Score = 63.6 bits (152), Expect = 1e-08
Identities = 51/148 (34%), Positives = 73/148 (48%), Gaps = 33/148 (22%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 4536
G+D + G Q +N L GG+G+D L+ A N+LSGGTGDD
Sbjct: 747 GDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDK 804
Query: 4537 LYGSAFADT------------------YLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEAR 4662
LYG D Y++ + GH TI ++GG + + +S +
Sbjct: 805 LYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGHHTIADEGGKGDRLHLSDISFDDIA 864
Query: 4663 FTRSGDDL--------SLLFNGSED--QVTVAGWF-----NGSGHQVESLVFQDGTVLSA 4797
F R G+DL L FN S D +T WF H VE + +DG +
Sbjct: 865 FKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDKDGREIKV 924
Query: 4798 E 4800
+
Sbjct: 925 D 925
Score = 59.3 bits (141), Expect = 3e-07
Identities = 44/138 (31%), Positives = 68/138 (48%), Gaps = 30/138 (21%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
+D + G QG D +N L GG+G+D L+ A N+L GGTGDD L
Sbjct: 748 DDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDKL 805
Query: 4042 YGSAFADT------------------YLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRL 4167
YG D Y++ + GH TI ++GG + I D+
Sbjct: 806 YGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGHHTIADEGGKGDRLHLSDISFDDIAF 865
Query: 4168 LREGQDVVLDL----------GNGHDSIRLKDWLT--SNGTRNHSADI 4275
R G D++++ N + I K+W ++G NH ++
Sbjct: 866 KRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEV 913
Score = 58.6 bits (139), Expect = 5e-07
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 30/111 (27%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG+GND L+ A N+L GGTGDD LYG D Y
Sbjct: 775 NNYLTGGSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIY 832
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDS 3222
++ Q GH TI ++GG + I D+ R G D++++ N +
Sbjct: 833 VYGQNYGHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNG 892
Query: 3223 IRLKDWLT--SNGTRNHSADI 3279
I K+W ++G NH ++
Sbjct: 893 ITFKNWFAKDASGADNHLVEV 913
Score = 36.7 bits (83), Expect = 1.7
Identities = 60/248 (24%), Positives = 85/248 (34%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+EG GND L D+ + GG GDD L+G G G+D + G + L
Sbjct: 733 IEGNYGNDRLYGD--DGDDYISGGQGDDQLFG-----------GSGNDKLSGGDGNNYLT 779
Query: 3136 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWT 3315
G G + L G +L G G D L G I DG
Sbjct: 780 GGSG----NDELQAHGAYNILSGGTGDDK------LYGGG---------GIDLLDG---- 816
Query: 3316 PEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3495
GND L G G DI EGG GD L +S
Sbjct: 817 -------------GEGNDYLNGGFGNDIYVYGQNYGHHTIAD-----EGGKGDR-LHLSD 857
Query: 3496 WSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLR 3675
S D++ G+D + A FN+ + + I + K G +V +
Sbjct: 858 ISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDK 917
Query: 3676 EGQDVVLD 3699
+G+++ +D
Sbjct: 918 DGREIKVD 925
>gi|2118619|pir||I41078 hemolysin - Escherichia coli
>gi|4388764|emb|CAA56234| (X79839) hemolysin [Escherichia
coli]
Length = 998
Score = 65.6 bits (157), Expect = 4e-09
Identities = 47/139 (33%), Positives = 70/139 (49%), Gaps = 30/139 (21%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G+D + G QG D +N L GG+G+D L+ A N+LSGGTGDD
Sbjct: 747 GDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDK 804
Query: 3541 LYGSAFADT------------------YLFNQGDGHDTIIEQGGTDKLVFGEGILAADVR 3666
LYG D Y++ Q GH TI ++GG + I D+
Sbjct: 805 LYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGHHTIADEGGKGDRLHLSDISFDDIA 864
Query: 3667 LLREGQDVVLDL----------GNGHDSIRLKDWLT--SNGTRNHSADI 3777
R G D++++ N + I K+W ++G NH ++
Sbjct: 865 FKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEV 913
Score = 63.6 bits (152), Expect = 1e-08
Identities = 51/148 (34%), Positives = 73/148 (48%), Gaps = 33/148 (22%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 4536
G+D + G Q +N L GG+G+D L+ A N+LSGGTGDD
Sbjct: 747 GDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDK 804
Query: 4537 LYGSAFADT------------------YLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEAR 4662
LYG D Y++ + GH TI ++GG + + +S +
Sbjct: 805 LYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGHHTIADEGGKGDRLHLSDISFDDIA 864
Query: 4663 FTRSGDDL--------SLLFNGSED--QVTVAGWF-----NGSGHQVESLVFQDGTVLSA 4797
F R G+DL L FN S D +T WF H VE + +DG +
Sbjct: 865 FKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDKDGREIKV 924
Query: 4798 E 4800
+
Sbjct: 925 D 925
Score = 59.3 bits (141), Expect = 3e-07
Identities = 44/138 (31%), Positives = 68/138 (48%), Gaps = 30/138 (21%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
+D + G QG D +N L GG+G+D L+ A N+L GGTGDD L
Sbjct: 748 DDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAH--GAYNILSGGTGDDKL 805
Query: 4042 YGSAFADT------------------YLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRL 4167
YG D Y++ + GH TI ++GG + I D+
Sbjct: 806 YGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGHHTIADEGGKGDRLHLSDISFDDIAF 865
Query: 4168 LREGQDVVLDL----------GNGHDSIRLKDWLT--SNGTRNHSADI 4275
R G D++++ N + I K+W ++G NH ++
Sbjct: 866 KRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEV 913
Score = 58.6 bits (139), Expect = 5e-07
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 30/111 (27%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG+GND L+ A N+L GGTGDD LYG D Y
Sbjct: 775 NNYLTGGSGNDELQAH--GAYNILSGGTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIY 832
Query: 3073 LFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL----------GNGHDS 3222
++ Q GH TI ++GG + I D+ R G D++++ N +
Sbjct: 833 VYGQNYGHHTIADEGGKGDRLHLSDISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNG 892
Query: 3223 IRLKDWLT--SNGTRNHSADI 3279
I K+W ++G NH ++
Sbjct: 893 ITFKNWFAKDASGADNHLVEV 913
Score = 36.7 bits (83), Expect = 1.7
Identities = 60/248 (24%), Positives = 85/248 (34%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+EG GND L D+ + GG GDD L+G G G+D + G + L
Sbjct: 733 IEGNYGNDRLYGD--DGDDYISGGQGDDQLFG-----------GSGNDKLSGGDGNNYLT 779
Query: 3136 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWT 3315
G G + L G +L G G D L G I DG
Sbjct: 780 GGSG----NDELQAHGAYNILSGGTGDDK------LYGGG---------GIDLLDG---- 816
Query: 3316 PEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3495
GND L G G DI EGG GD L +S
Sbjct: 817 -------------GEGNDYLNGGFGNDIYVYGQNYGHHTIAD-----EGGKGDR-LHLSD 857
Query: 3496 WSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLR 3675
S D++ G+D + A FN+ + + I + K G +V +
Sbjct: 858 ISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVITDK 917
Query: 3676 EGQDVVLD 3699
+G+++ +D
Sbjct: 918 DGREIKVD 925
>gi|1708215|sp|P55118|LKAB_PASHA LEUKOTOXIN FROM SEROTYPE A11
>gi|397992 (U01215) LktA [Pasteurella haemolytica]
Length = 953
Score = 65.6 bits (157), Expect = 4e-09
Identities = 45/153 (29%), Positives = 80/153 (51%), Gaps = 14/153 (9%)
Frame = +1
Query: 4360 NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 4539
ND KG + ++RL GG GDD++ + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGKDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLL 777
Query: 4540 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
+G D ++ +GDG+D I + G DKL F + + K+ F + +L ++ N +++V
Sbjct: 778 HGGKGDDIFVHRQGDGNDIITDSDGNDKLSF-SDSNLKDLTFEKVKHNL-VITNSRKEKV 835
Query: 4720 TVAGWFNGS-------------GHQVESLVFQDG-TVLSAEVERLIA 4818
T+ WF + ++E ++ Q+G + S +V+ LIA
Sbjct: 836 TIQDWFREADFAKEVRNYKATKDEKIEEIIGQNGERITSKQVDDLIA 882
Score = 62.8 bits (150), Expect = 2e-08
Identities = 43/146 (29%), Positives = 73/146 (49%), Gaps = 8/146 (5%)
Frame = +1
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
ND KG + D ++RL GG GDD++ + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGKDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLL 777
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 3723
+G D ++ QGDG+D I + G DKL F + L D+ + ++V+ + + +
Sbjct: 778 HGGKGDDIFVHRQGDGNDIITDSDGNDKLSFSDSNL-KDLTFEKVKHNLVI-TNSRKEKV 835
Query: 3724 RLKDWLT----SNGTRNHSA----DIEQIVFADG 3801
++DW + RN+ A IE+I+ +G
Sbjct: 836 TIQDWFREADFAKEVRNYKATKDEKIEEIIGQNG 869
Score = 60.1 bits (143), Expect = 2e-07
Identities = 42/146 (28%), Positives = 73/146 (49%), Gaps = 8/146 (5%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND KG + D ++RL GG GDD++ + D+ + GG G+D L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGKDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLL 777
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 4221
+G D ++ +GDG+D I + G DKL F + L D+ + ++V+ + + +
Sbjct: 778 HGGKGDDIFVHRQGDGNDIITDSDGNDKLSFSDSNL-KDLTFEKVKHNLVI-TNSRKEKV 835
Query: 4222 RLKDWLT----SNGTRNHSA----DIEQIVFADG 4299
++DW + RN+ A IE+I+ +G
Sbjct: 836 TIQDWFREADFAKEVRNYKATKDEKIEEIIGQNG 869
Score = 56.6 bits (134), Expect = 2e-06
Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D++ + D+ + GG G+D L+G D ++ QGDG+D I + G D
Sbjct: 747 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDIITDSDGND 804
Query: 3127 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLT----SNGTRNHSA----DIE 3282
KL F + L D+ + ++V+ + + + ++DW + RN+ A IE
Sbjct: 805 KLSFSDSNL-KDLTFEKVKHNLVI-TNSRKEKVTIQDWFREADFAKEVRNYKATKDEKIE 862
Query: 3283 QIVFADG 3303
+I+ +G
Sbjct: 863 EIIGQNG 869
Score = 41.4 bits (95), Expect = 0.066
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG 3117
++E N+ Y++ D + +IG + +D GS F D FN GDG DTI +
Sbjct: 688 KIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDA--FNGGDGVDTIDGKD 745
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 3225
G D+L G+G D ++D GNG D I
Sbjct: 746 GNDRLFGGKG-------------DDIIDGGNGDDFI 768
>gi|311825|emb|CAA80501| (Z22887) leukotoxin A [Pasteurella
haemolytica]
Length = 233
Score = 65.2 bits (156), Expect = 5e-09
Identities = 41/125 (32%), Positives = 74/125 (58%), Gaps = 14/125 (11%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4620
++RL GG GDD++ + D+ + GG G+D L+G D ++ +GDG+D+I E G D
Sbjct: 27 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 84
Query: 4621 KLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGS-------------GHQVE 4761
KL F + + K+ F + L ++ N +++VT+ WF + ++E
Sbjct: 85 KLSF-SDSNLKDLTFEKVNHHL-VITNTKQEKVTIQNWFREAEFAKTIQNYVATRDDKIE 142
Query: 4762 SLVFQDG-TVLSAEVERLI 4815
++ Q+G + S +V+ LI
Sbjct: 143 EIIGQNGERITSKQVDELI 161
Score = 58.2 bits (138), Expect = 6e-07
Identities = 32/95 (33%), Positives = 47/95 (48%)
Frame = +1
Query: 3367 DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLY 3546
D KG + D ++RL GG GDD++ + D+ + GG G+D L+
Sbjct: 1 DIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLH 58
Query: 3547 GSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
G D ++ QGDG+D+I E G DKL F + L
Sbjct: 59 GGKGDDIFVHRQGDGNDSITESEGNDKLSFSDSNL 93
Score = 55.4 bits (131), Expect = 4e-06
Identities = 31/95 (32%), Positives = 47/95 (48%)
Frame = +1
Query: 3865 DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLY 4044
D KG + D ++RL GG GDD++ + D+ + GG G+D L+
Sbjct: 1 DIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLH 58
Query: 4045 GSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGIL 4149
G D ++ +GDG+D+I E G DKL F + L
Sbjct: 59 GGKGDDIFVHRQGDGNDSITESEGNDKLSFSDSNL 93
Score = 54.3 bits (128), Expect = 9e-06
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D++ + D+ + GG G+D L+G D ++ QGDG+D+I E G D
Sbjct: 27 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 84
Query: 3127 KLVFGEGIL 3153
KL F + L
Sbjct: 85 KLSFSDSNL 93
Score = 36.0 bits (81), Expect = 2.9
Identities = 25/63 (39%), Positives = 29/63 (45%)
Frame = +1
Query: 3037 DTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGH 3216
D GS F D FN GDG DTI G D+L G+G D ++D GNG
Sbjct: 1 DIFKGSKFNDA--FNGGDGVDTIDGNDGNDRLFGGKG-------------DDIIDGGNGD 45
Query: 3217 DSI 3225
D I
Sbjct: 46 DFI 48
>gi|311829|emb|CAA80498| (Z22884) leukotoxin A [Pasteurella
haemolytica]
Length = 211
Score = 65.2 bits (156), Expect = 5e-09
Identities = 41/125 (32%), Positives = 74/125 (58%), Gaps = 14/125 (11%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4620
++RL GG GDD++ + D+ + GG G+D L+G D ++ +GDG+D+I E G D
Sbjct: 5 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 62
Query: 4621 KLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGS-------------GHQVE 4761
KL F + + K+ F + L ++ N +++VT+ WF + ++E
Sbjct: 63 KLSF-SDSNLKDLTFEKVNHHL-VITNTKQEKVTIQNWFREAEFAKTIQNYVATRDDKIE 120
Query: 4762 SLVFQDG-TVLSAEVERLI 4815
++ Q+G + S +V+ LI
Sbjct: 121 EIIGQNGERITSKQVDELI 139
Score = 57.4 bits (136), Expect = 1e-06
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = +1
Query: 3445 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3624
++RL GG GDD++ + D+ + GG G+D L+G D ++ QGDG+D+I E G D
Sbjct: 5 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 62
Query: 3625 KLVFGEGIL 3651
KL F + L
Sbjct: 63 KLSFSDSNL 71
Score = 54.7 bits (129), Expect = 7e-06
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4122
++RL GG GDD++ + D+ + GG G+D L+G D ++ +GDG+D+I E G D
Sbjct: 5 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 62
Query: 4123 KLVFGEGIL 4149
KL F + L
Sbjct: 63 KLSFSDSNL 71
Score = 54.3 bits (128), Expect = 9e-06
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D++ + D+ + GG G+D L+G D ++ QGDG+D+I E G D
Sbjct: 5 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 62
Query: 3127 KLVFGEGIL 3153
KL F + L
Sbjct: 63 KLSFSDSNL 71
>gi|1708213|sp|P55116|LKA3_PASHA LEUKOTOXIN FROM SEROTYPE T3
>gi|397995 (U01216) LktA [Pasteurella haemolytica]
Length = 953
Score = 65.2 bits (156), Expect = 5e-09
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Frame = +1
Query: 4360 NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 4539
ND KG + ++RL GG GDD++ + D+ + GG G+ L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNHLL 777
Query: 4540 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
+G D ++ +GDG+D+I E G DKL F + + K+ F + L ++ N +++V
Sbjct: 778 HGGKGVDIFVHRQGDGNDSITESEGNDKLSF-SDSNLKDLTFEKVNHHL-VITNTKQEKV 835
Query: 4720 TVAGWFNGS-------------GHQVESLVFQDG-TVLSAEVERLIA 4818
T+ WF + ++E ++ Q+G + S +V+ LIA
Sbjct: 836 TIQNWFREAEFAKTIQNYVATRDDKIEEIIGQNGERITSKQVDDLIA 882
Score = 58.6 bits (139), Expect = 5e-07
Identities = 32/96 (33%), Positives = 47/96 (48%)
Frame = +1
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 3543
ND KG + D ++RL GG GDD++ + D+ + GG G+ L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNHLL 777
Query: 3544 YGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
+G D ++ QGDG+D+I E G DKL F + L
Sbjct: 778 HGGKGVDIFVHRQGDGNDSITESEGNDKLSFSDSNL 813
Score = 55.8 bits (132), Expect = 3e-06
Identities = 31/96 (32%), Positives = 47/96 (48%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
ND KG + D ++RL GG GDD++ + D+ + GG G+ L
Sbjct: 720 NDIFKGSKFNDAFNGGDGVDTIDGNDGNDRLFGGKGDDIIDGG--NGDDFIDGGKGNHLL 777
Query: 4042 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGIL 4149
+G D ++ +GDG+D+I E G DKL F + L
Sbjct: 778 HGGKGVDIFVHRQGDGNDSITESEGNDKLSFSDSNL 813
Score = 52.3 bits (123), Expect = 3e-05
Identities = 26/69 (37%), Positives = 41/69 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D++ + D+ + GG G+ L+G D ++ QGDG+D+I E G D
Sbjct: 747 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNHLLHGGKGVDIFVHRQGDGNDSITESEGND 804
Query: 3127 KLVFGEGIL 3153
KL F + L
Sbjct: 805 KLSFSDSNL 813
Score = 41.0 bits (94), Expect = 0.086
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG 3117
++E N+ Y++ D + +IG + +D GS F D FN GDG DTI
Sbjct: 688 KIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDA--FNGGDGVDTIDGND 745
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI 3225
G D+L G+G D ++D GNG D I
Sbjct: 746 GNDRLFGGKG-------------DDIIDGGNGDDFI 768
>gi|421309|pir||S34238 leukotoxin A - Pasteurella haemolytica
(fragment) >gi|311831|emb|CAA80499| (Z22885) leukotoxin A
[Pasteurella haemolytica]
Length = 208
Score = 65.2 bits (156), Expect = 5e-09
Identities = 41/125 (32%), Positives = 74/125 (58%), Gaps = 14/125 (11%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4620
++RL GG GDD++ + D+ + GG G+D L+G D ++ +GDG+D+I E G D
Sbjct: 2 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 59
Query: 4621 KLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGS-------------GHQVE 4761
KL F + + K+ F + L ++ N +++VT+ WF + ++E
Sbjct: 60 KLSF-SDSNLKDLTFEKVNHHL-VITNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIE 117
Query: 4762 SLVFQDG-TVLSAEVERLI 4815
++ Q+G + S +V+ LI
Sbjct: 118 EIIGQNGERITSKQVDELI 136
Score = 58.2 bits (138), Expect = 6e-07
Identities = 38/119 (31%), Positives = 66/119 (54%), Gaps = 8/119 (6%)
Frame = +1
Query: 3445 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3624
++RL GG GDD++ + D+ + GG G+D L+G D ++ QGDG+D+I E G D
Sbjct: 2 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 59
Query: 3625 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLT----SNGTRNHSA----DIE 3780
KL F + L D+ + +V+ + + +++W + RN+ A IE
Sbjct: 60 KLSFSDSNL-KDLTFEKVNHHLVI-TNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIE 117
Query: 3781 QIVFADG 3801
+I+ +G
Sbjct: 118 EIIGQNG 124
Score = 55.4 bits (131), Expect = 4e-06
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4122
++RL GG GDD++ + D+ + GG G+D L+G D ++ +GDG+D+I E G D
Sbjct: 2 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 59
Query: 4123 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLT----SNGTRNHSA----DIE 4278
KL F + L D+ + +V+ + + +++W + RN+ A IE
Sbjct: 60 KLSFSDSNL-KDLTFEKVNHHLVI-TNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIE 117
Query: 4279 QIVFADG 4299
+I+ +G
Sbjct: 118 EIIGQNG 124
Score = 55.0 bits (130), Expect = 5e-06
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++RL GG G+D++ + D+ + GG G+D L+G D ++ QGDG+D+I E G D
Sbjct: 2 NDRLFGGKGDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGND 59
Query: 3127 KLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLT----SNGTRNHSA----DIE 3282
KL F + L D+ + +V+ + + +++W + RN+ A IE
Sbjct: 60 KLSFSDSNL-KDLTFEKVNHHLVI-TNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIE 117
Query: 3283 QIVFADG 3303
+I+ +G
Sbjct: 118 EIIGQNG 124
>gi|3873281 (AF099800) mannuronan C-5-epimerase AlgE7 [Azotobacter
vinelandii]
Length = 856
Score = 64.0 bits (153), Expect = 1e-08
Identities = 99/372 (26%), Positives = 146/372 (38%), Gaps = 14/372 (3%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQ-GDGHDTIIEQGGTDKLVF 3636
GG+G+D L + ++VL GG G D L G AD + F D + T L F
Sbjct: 405 GGSGNDTLSGD--AGNDVLEGGAGSDRLTGGEGADIFRFTAVSDSYYTASSSVADQILDF 462
Query: 3637 GEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADG---TL 3807
A++ R+ G LG+G+ L S+G+R + E+ ADG +L
Sbjct: 463 D----ASNDRIDLTGLGFT-GLGDGYGGT-LAVLANSDGSRTYLRSYEKD--ADGRYFSL 514
Query: 3808 WTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKV 3987
+ T+ G +G D ++ L GG G+DVL+
Sbjct: 515 TLDGNFVGRLDDSNLVFRHKTIAGTEGDDSLTGNAMAEILDGGSGNDSLAGGLGNDVLRG 574
Query: 3988 SYWSADNVLIGGTGDDTLYGSAFADTYLF--------NKGDGHDTIIEQGGTDKLVFGEG 4143
+ D++L GG G D L G AD + F N GD +I L F G
Sbjct: 575 G--AGDDILNGGLGRDQLSGGEGADIFRFTSVADSYQNSGDNFSDLI-------LDFDPG 625
Query: 4144 ILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLW--TPE 4317
D+ L LG+GH+ L W +S R + + + ADG + E
Sbjct: 626 EDRIDLSGLGFS-----GLGDGHNGTLLL-WTSSETNRTYLKNFD--TDADGRRFEIALE 677
Query: 4318 XXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS 4497
L+G + + L GGAG D+L +
Sbjct: 678 GVFSDLSEKQLVFERLVLEGTRLGDQLSGTEL---------NEELLGGAGRDILNGG--A 726
Query: 4498 ADNVLSGGTGDDTLYGSAFADTYLFN 4575
D++L GG+ DTL G + AD + FN
Sbjct: 727 GDDILDGGSERDTLTGGSGADVFRFN 752
Score = 62.5 bits (149), Expect = 3e-08
Identities = 116/441 (26%), Positives = 177/441 (39%), Gaps = 60/441 (13%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
++G GND+L + ++++GG+G+DTL G A G+D + G+D+L
Sbjct: 385 IDGSTGNDLLTGT--PIADLIVGGSGNDTLSGDA-----------GNDVLEGGAGSDRLT 431
Query: 3136 FGEGILAADVRLLREGQ--------DVVLDLGNGHDSIRLKDW----------------L 3243
GEG + + D +LD +D I L
Sbjct: 432 GGEGADIFRFTAVSDSYYTASSSVADQILDFDASNDRIDLTGLGFTGLGDGYGGTLAVLA 491
Query: 3244 TSNGTRNHSADIEQ-----------------------IVFADGTLWTPEXXXXXXXXXXX 3354
S+G+R + E+ +VF T+ E
Sbjct: 492 NSDGSRTYLRSYEKDADGRYFSLTLDGNFVGRLDDSNLVFRHKTIAGTEGDDSLTGNAMA 551
Query: 3355 X-----PGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLS 3519
GND+L G G D+ L GGAGDD+L + LS
Sbjct: 552 EILDGGSGNDSLAGGLGNDV------------------LRGGAGDDILNGGL--GRDQLS 591
Query: 3520 GGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLD 3699
GG G D ++ AD+Y N GD +I L F G D+ L
Sbjct: 592 GGEGADIFRFTSVADSYQ-NSGDNFSDLI-------LDFDPGEDRIDLSGLG-----FSG 638
Query: 3700 LGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKG 3879
LG+GH+ L W +S R + + + ADG + + L
Sbjct: 639 LGDGHNGTLLL-WTSSETNRTYLKNFD--TDADGRRFEIALEGVFSDLSEKQLVFERL-- 693
Query: 3880 WQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFA 4059
+ + L GGAG D+L + D++L GG+ DTL G + A
Sbjct: 694 -----VLEGTRLGDQLSGTELNEELLGGAGRDILNGG--AGDDILDGGSERDTLTGGSGA 746
Query: 4060 DTYLFNKG-DGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV-------LDLGNGHD 4215
D + FN D GT ++ D+ G+D++ LGNG+D
Sbjct: 747 DVFRFNATLDSFRNY--DNGTSRV--------DDITDFTVGEDLIDLSALGYSGLGNGYD 796
Query: 4216 SIRLKDWLTSNGTRNHSADIE 4278
L L ++GT+ + D E
Sbjct: 797 G-TLAVLLNADGTKTYLKDRE 816
Score = 45.3 bits (105), Expect = 0.004
Identities = 67/266 (25%), Positives = 111/266 (41%), Gaps = 21/266 (7%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV 4131
++G G+D+L + ++++GG+G+DTL G A G+D + G+D+L
Sbjct: 385 IDGSTGNDLLTGT--PIADLIVGGSGNDTLSGDA-----------GNDVLEGGAGSDRLT 431
Query: 4132 FGEGILAADVRLLREGQ--------DVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIV 4287
GEG + + D +LD +D I L + + + +
Sbjct: 432 GGEGADIFRFTAVSDSYYTASSSVADQILDFDASNDRIDLTGLGFTGLGDGYGGTLAVLA 491
Query: 4288 FADGT---LWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEG 4458
+DG+ L + E GN + G
Sbjct: 492 NSDGSRTYLRSYEKDADGRYFSLTLDGN-------------FVGRLDDSNLVFRHKTIAG 538
Query: 4459 GAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG-GTDKLVFG 4635
GDD L + + +L GG+G+D+L G D +G D I+ G G D+L G
Sbjct: 539 TEGDDSLTGNAMA--EILDGGSGNDSLAGGLGNDVL---RGGAGDDILNGGLGRDQLSGG 593
Query: 4636 AG-----LSRKEARFTRSGD---DLSLLFNGSEDQVTVAG-WFNGSG 4749
G + + SGD DL L F+ ED++ ++G F+G G
Sbjct: 594 EGADIFRFTSVADSYQNSGDNFSDLILDFDPGEDRIDLSGLGFSGLG 640
Score = 38.7 bits (88), Expect = 0.44
Identities = 36/112 (32%), Positives = 55/112 (48%), Gaps = 8/112 (7%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQG-DGHDTIIEQGGT 3123
+ L GGAG D+L + D++L GG+ DTL G + AD + FN D GT
Sbjct: 710 NEELLGGAGRDILNGG--AGDDILDGGSERDTLTGGSGADVFRFNATLDSFRNY--DNGT 765
Query: 3124 DKLVFGEGILAADVRLLREGQDVV-------LDLGNGHDSIRLKDWLTSNGTRNHSADIE 3282
++ D+ G+D++ LGNG+D L L ++GT+ + D E
Sbjct: 766 SRV--------DDITDFTVGEDLIDLSALGYSGLGNGYDG-TLAVLLNADGTKTYLKDRE 816
Score = 34.8 bits (78), Expect = 6.5
Identities = 67/266 (25%), Positives = 111/266 (41%), Gaps = 11/266 (4%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV 4131
+EGG+ D + VLI + D TL G A+ Y G+G+ + QG D +
Sbjct: 239 IEGGSFHDN------GQEGVLIKMSTDVTLQG---AEIY----GNGYAGVRVQGVEDVRI 285
Query: 4132 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN---------GTRNHSADIEQI 4284
I D + +V+++ + D + T N G+ N + I++
Sbjct: 286 LDNYI--HDNAQSKANAEVIVESYDDRDGPSDDYYETQNVTVKGNTIVGSANSTYGIQER 343
Query: 4285 VFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNR-LEGG 4461
ADGT +T GN+++ G Q + + ++G
Sbjct: 344 --ADGTDYT-------------SIGNNSVSGTQRGIVQLSGTNSTFSGRSGDAYQFIDGS 388
Query: 4462 AGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAG 4641
G+D+L + +++ GG+G+DTL G A D + G G D + G D F A
Sbjct: 389 TGNDLLTGT--PIADLIVGGSGNDTLSGDAGND--VLEGGAGSDRLTGGEGADIFRFTA- 443
Query: 4642 LSRKEARFTRSGDDLSLLFNGSEDQVTVAG-WFNGSG 4749
+S + S D L F+ S D++ + G F G G
Sbjct: 444 VSDSYYTASSSVADQILDFDASNDRIDLTGLGFTGLG 480
>gi|1653855|dbj|BAA18765| (D90917) leukotoxin (LtA) [Synechocystis
sp.]
Length = 1290
Score = 62.5 bits (149), Expect = 3e-08
Identities = 82/260 (31%), Positives = 109/260 (41%), Gaps = 28/260 (10%)
Frame = +1
Query: 3364 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGD--D 3537
NDT+ G G D+ S+ + GG G+D ++ Y + + GGT D D
Sbjct: 53 NDTISGANGNDVIYGHHGDDFLSGEGDSDTIYGGFGNDAIRGGY---HDWIPGGTPDGAD 109
Query: 3538 TLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHD 3717
LYG D L GD D I G D+L FGE + ++ E D +D+G G D
Sbjct: 110 KLYGEEGDDMILAEGGD--DQIWGGPGNDRL-FGEH---GNDQIWGEDGDDYIDVGPGLD 163
Query: 3718 SIRLKDWLTSNG----TRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQ 3885
S W NG T N A + + DG NDT+ G +
Sbjct: 164 SA----W-GGNGNDTITSNWMAGRKYLSGEDG--------------------NDTIFGAE 198
Query: 3886 GKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL------KVSYWSADNVLIGGTGDDTLYG 4047
DI +EGG GDDVL S A + + GG G+D +YG
Sbjct: 199 NSDI------------------IEGGPGDDVLWGLRAYPSSVGDAIDRIYGGPGNDLIYG 240
Query: 4048 SAFADTYLFNKGD----------------GHDTIIEQGGTDKLVFGEG 4143
+F Y N G G+DTI G D + GEG
Sbjct: 241 DSF---YFPNDGLWSSVLQYTQDIIWGGLGNDTIQGMAGNDTIYGGEG 285
Score = 61.3 bits (146), Expect = 7e-08
Identities = 89/346 (25%), Positives = 140/346 (39%), Gaps = 25/346 (7%)
Frame = +1
Query: 3010 NVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQD 3189
+V+ +GDD ++G F+ +DTI G D + G D L EG
Sbjct: 30 DVVWAKSGDDLVHGRNFSSL-----SGANDTISGANGNDVIYGHHG----DDFLSGEGDS 80
Query: 3190 VVLDLGNGHDSIR--LKDWL---TSNGT-RNHSADIEQIVFADG---TLWTPEXXXXXXX 3342
+ G G+D+IR DW+ T +G + + + + ++ A+G +W
Sbjct: 81 DTIYGGFGNDAIRGGYHDWIPGGTPDGADKLYGEEGDDMILAEGGDDQIW---------- 130
Query: 3343 XXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSG 3522
PGND L G G D + GG G+D + ++ + LSG
Sbjct: 131 ---GGPGNDRLFGEHGNDQIWGEDGDDYIDVGPGLDSAWGGNGNDTITSNWMAGRKYLSG 187
Query: 3523 GTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDL 3702
G+DT++G+ +D IIE G D +++G L A + + D +
Sbjct: 188 EDGNDTIFGAENSD------------IIEGGPGDDVLWG---LRAYPSSVGDAIDRIYG- 231
Query: 3703 GNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGW 3882
G G+D I + N S + + +W NDT+ G
Sbjct: 232 GPGNDLIYGDSFYFPNDGLWSSV----LQYTQDIIW----GGLGNDTIQGMAGNDTIYGG 283
Query: 3883 QGKDIXXXXXXXXXXXX-------------XXXSNRLEGGAGDDVLKVSYWSAD---NVL 4014
+G DI N GG G+DV+KVS ++ N+L
Sbjct: 284 EGNDIIYGGYDPSGSFIPPAEFHGDNFIDVGTGHNFAYGGPGNDVIKVSGEISEQGFNIL 343
Query: 4015 IGGTGDDTLYG 4047
IGG GDD + G
Sbjct: 344 IGGDGDDLIQG 354
Score = 55.8 bits (132), Expect = 3e-06
Identities = 79/290 (27%), Positives = 118/290 (40%), Gaps = 41/290 (14%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGD--D 4035
NDT+ G G D+ S+ + GG G+D ++ Y + + GGT D D
Sbjct: 53 NDTISGANGNDVIYGHHGDDFLSGEGDSDTIYGGFGNDAIRGGY---HDWIPGGTPDGAD 109
Query: 4036 TLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHD 4215
LYG D L GD D I G D+L FGE + ++ E D +D+G G D
Sbjct: 110 KLYGEEGDDMILAEGGD--DQIWGGPGNDRL-FGEH---GNDQIWGEDGDDYIDVGPGLD 163
Query: 4216 SI---RLKDWLTSNGTRNH----------------SADIEQIVFADGTLWT----PEXXX 4326
S D +TSN ++DI + D LW P
Sbjct: 164 SAWGGNGNDTITSNWMAGRKYLSGEDGNDTIFGAENSDIIEGGPGDDVLWGLRAYPSSVG 223
Query: 4327 XXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 4506
PGND + G + + GG G+D ++ + ++
Sbjct: 224 DAIDRIYGGPGNDLIYG---DSFYFPNDGLWSSVLQYTQDIIWGGLGNDTIQGM--AGND 278
Query: 4507 VLSGGTGDDTLYG-----------SAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRK 4653
+ GG G+D +YG + F + G GH+ G D + +S +
Sbjct: 279 TIYGGEGNDIIYGGYDPSGSFIPPAEFHGDNFIDVGTGHNFAYGGPGNDVIKVSGEISEQ 338
Query: 4654 EARFTRSGDDLSLLFNGS-----EDQVTVAG 4731
GD L+ G ED V + G
Sbjct: 339 GFNILIGGDGDDLIQGGDNSVPIEDLVVLPG 369
Score = 50.8 bits (119), Expect = 1e-04
Identities = 70/219 (31%), Positives = 95/219 (42%), Gaps = 24/219 (10%)
Frame = +1
Query: 2989 VSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVR 3168
+S + ++V+ G GDD L G +DT G G+D I +GG + G AD
Sbjct: 56 ISGANGNDVIYGHHGDDFLSGEGDSDT--IYGGFGNDAI--RGGYHDWIPGGTPDGADKL 111
Query: 3169 LLREGQDVVLDLGNGHDSIRLKDWLTSNGTR---NHSADIEQIVFADGTLWTPEXXXXXX 3339
EG D++L G G D I W R H D QI DG +
Sbjct: 112 YGEEGDDMILAEG-GDDQI----WGGPGNDRLFGEHGND--QIWGEDGDDYI--DVGPGL 162
Query: 3340 XXXXXXPGNDTL-KGWQ-GKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL------KVSY 3495
GNDT+ W G+ S+ +EGG GDDVL S
Sbjct: 163 DSAWGGNGNDTITSNWMAGRKYLSGEDGNDTIFGAENSDIIEGGPGDDVLWGLRAYPSSV 222
Query: 3496 WSADNVLSGGTGDDTLYGSAF--------ADTYLFNQ-----GDGHDTIIEQGGTDKLVF 3636
A + + GG G+D +YG +F + + Q G G+DTI G D +
Sbjct: 223 GDAIDRIYGGPGNDLIYGDSFYFPNDGLWSSVLQYTQDIIWGGLGNDTIQGMAGNDTIYG 282
Query: 3637 GEG 3645
GEG
Sbjct: 283 GEG 285
Score = 46.9 bits (109), Expect = 0.002
Identities = 86/346 (24%), Positives = 139/346 (39%), Gaps = 35/346 (10%)
Frame = +1
Query: 3508 NVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQD 3687
+V+ +GDD ++G F+ +DTI G D + G D L EG
Sbjct: 30 DVVWAKSGDDLVHGRNFSSL-----SGANDTISGANGNDVIYGHHG----DDFLSGEGDS 80
Query: 3688 VVLDLGNGHDSIR--LKDWL---TSNGT-RNHSADIEQIVFADG---TLWTPEXXXXXXX 3840
+ G G+D+IR DW+ T +G + + + + ++ A+G +W
Sbjct: 81 DTIYGGFGNDAIRGGYHDWIPGGTPDGADKLYGEEGDDMILAEGGDDQIW---------- 130
Query: 3841 XXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIG 4020
ND L G G D + GG G+D + ++ + L G
Sbjct: 131 ---GGPGNDRLFGEHGNDQIWGEDGDDYIDVGPGLDSAWGGNGNDTITSNWMAGRKYLSG 187
Query: 4021 GTGDDTLYGSAFAD---------------TYLFNKGDGHDTIIEQGGTDKLVFGEGILAA 4155
G+DT++G+ +D Y + GD D I G D L++G+
Sbjct: 188 EDGNDTIFGAENSDIIEGGPGDDVLWGLRAYPSSVGDAIDRIYGGPGND-LIYGDSFYFP 246
Query: 4156 DVRL----LREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXX 4323
+ L L+ QD++ G G+D+I Q + + T++ E
Sbjct: 247 NDGLWSSVLQYTQDIIWG-GLGNDTI-------------------QGMAGNDTIYGGE-- 284
Query: 4324 XXXXXXXXXXPGNDTLKGWQXXXXX----XXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 4491
GND + G N GG G+DV+KVS
Sbjct: 285 -----------GNDIIYGGYDPSGSFIPPAEFHGDNFIDVGTGHNFAYGGPGNDVIKVSG 333
Query: 4492 WSAD---NVLSGGTGDDTLYG 4545
++ N+L GG GDD + G
Sbjct: 334 EISEQGFNILIGGDGDDLIQG 354
Score = 43.4 bits (100), Expect = 0.017
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 9/198 (4%)
Frame = +1
Query: 4006 NVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQD 4185
+V+ +GDD ++G F+ +DTI G D + G D L EG
Sbjct: 30 DVVWAKSGDDLVHGRNFSSL-----SGANDTISGANGNDVIYGHHG----DDFLSGEGDS 80
Query: 4186 VVLDLGNGHDSIR--LKDWL---TSNGT-RNHSADIEQIVFADG---TLWTPEXXXXXXX 4338
+ G G+D+IR DW+ T +G + + + + ++ A+G +W
Sbjct: 81 DTIYGGFGNDAIRGGYHDWIPGGTPDGADKLYGEEGDDMILAEGGDDQIW---------- 130
Query: 4339 XXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSG 4518
PGND L G + GG G+D + ++ + LSG
Sbjct: 131 ---GGPGNDRLFGEHGNDQIWGEDGDDYIDVGPGLDSAWGGNGNDTITSNWMAGRKYLSG 187
Query: 4519 GTGDDTLYGSAFADTYLFNKGDGHDTI 4599
G+DT++G+ +D + G G D +
Sbjct: 188 EDGNDTIFGAENSD--IIEGGPGDDVL 212
Score = 36.0 bits (81), Expect = 2.9
Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSAD---NVLIGGTGDDTLYG 3051
GG GNDV+KVS ++ N+LIGG GDD + G
Sbjct: 322 GGPGNDVIKVSGEISEQGFNILIGGDGDDLIQG 354
>gi|1710800|sp|P55130|RT31_ACTPL RTX-III TOXIN DETERMINANT A FROM
SEROTYPE 2 (APX-IIIA) (CYTOLYSIN IIIA) (CLY-IIIA)
>gi|1073758|pir||S51784 toxin III - Actinobacillus
pleuropneumoniae (serotype 2) >gi|470685 (L12145) RTX
toxin [Actinobacillus pleuropneumoniae 2]
Length = 1049
Score = 59.7 bits (142), Expect = 2e-07
Identities = 43/118 (36%), Positives = 65/118 (54%), Gaps = 8/118 (6%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG---G 4614
N L GG GDD L S S ++L GG G+D L G +D Y++ G+ TI +QG
Sbjct: 822 NVLRGGKGDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKASD 879
Query: 4615 TDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQ--VTVAGWFNGS---GHQVESLVFQD 4779
+DKL + + LS R D+L N + + +T+ WF G H++E +V ++
Sbjct: 880 SDKL-YLSDLSFDNILVKRVNDNLEFRSNNNSNSGVLTIKDWFKGGNSYNHKIEQIVDKN 938
Query: 4780 GTVLSA 4797
G L+A
Sbjct: 939 GRKLTA 944
Score = 57.8 bits (137), Expect = 8e-07
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
GN+ L G G D N L GG GDD L S S ++L GG G+D
Sbjct: 801 GNNYLSGGDGND--------ELQVLGNGFNVLRGGKGDDKLYGS--SGSDLLDGGEGNDY 850
Query: 3541 LYGSAFADTYLFNQGDGHDTIIEQG---GTDKLVFGEGILAADVRLLREGQDVVLDLGNG 3711
L G +D Y++ G+ TI +QG +DKL + L+ D L++ D + N
Sbjct: 851 LEGGDGSDFYVYRSTSGNHTIYDQGKASDSDKLYLSD--LSFDNILVKRVNDNLEFRSNN 908
Query: 3712 HDS---IRLKDWLTSNGTRNHSADIEQIVFADG 3801
+ + + +KDW + NH IEQIV +G
Sbjct: 909 NSNSGVLTIKDWFKGGNSYNHK--IEQIVDKNG 939
Score = 56.2 bits (133), Expect = 2e-06
Identities = 47/119 (39%), Positives = 68/119 (56%), Gaps = 24/119 (20%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG GND L+V + NVL GG GDD LYGS+ +D Y
Sbjct: 802 NNYLSGGDGNDELQV-LGNGFNVLRGGKGDDKLYGSSGSDLLDGGEGNDYLEGGDGSDFY 860
Query: 3073 LFNQGDGHDTIIEQG---GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDS---IRLK 3234
++ G+ TI +QG +DKL + L+ D L++ D + N + + + +K
Sbjct: 861 VYRSTSGNHTIYDQGKASDSDKLYLSD--LSFDNILVKRVNDNLEFRSNNNSNSGVLTIK 918
Query: 3235 DWLTSNGTRNHSADIEQIVFADG 3303
DW + NH IEQIV +G
Sbjct: 919 DWFKGGNSYNHK--IEQIVDKNG 939
Score = 55.8 bits (132), Expect = 3e-06
Identities = 43/118 (36%), Positives = 63/118 (52%), Gaps = 6/118 (5%)
Frame = +1
Query: 3946 NRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG---G 4116
N L GG GDD L S S ++L GG G+D L G +D Y++ G+ TI +QG
Sbjct: 822 NVLRGGKGDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKASD 879
Query: 4117 TDKLVFGEGILAADVRLLREGQDVVLDLGNGHDS---IRLKDWLTSNGTRNHSADIEQIV 4287
+DKL + L+ D L++ D + N + + + +KDW + NH IEQIV
Sbjct: 880 SDKLYLSD--LSFDNILVKRVNDNLEFRSNNNSNSGVLTIKDWFKGGNSYNHK--IEQIV 935
Query: 4288 FADG 4299
+G
Sbjct: 936 DKNG 939
>gi|1710801|sp|P55131|RT32_ACTPL RTX-III TOXIN DETERMINANT A FROM
SEROTYPE 8 (APX-IIIA) (CYTOLYSIN IIIA) (CLY-IIIA)
>gi|477908|pir||B49219 toxin III - Actinobacillus
pleuropneumoniae (serotype 8) >gi|38958|emb|CAA48711|
(X68815) apxIIIA [Actinobacillus pleuropneumoniae]
>gi|558152|emb|CAA56358| (X80055) xIIIA [Actinobacillus
pleuropneumoniae]
Length = 1052
Score = 58.6 bits (139), Expect = 5e-07
Identities = 55/153 (35%), Positives = 72/153 (46%), Gaps = 9/153 (5%)
Frame = +1
Query: 3361 GNDTLKGWQGKD-IXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDD 3537
GND L G G + + N L GG GDD L S S ++L GG G+D
Sbjct: 793 GNDKLLGGNGNNYLSGGDGNDELQVLGNGFNVLRGGKGDDKLYGS--SGSDLLDGGEGND 850
Query: 3538 TLYGSAFADTYLFNQGDGHDTIIEQGGT---DKLVFGEGILAADVRLLREGQDVVLDLGN 3708
L G +D Y++ G+ TI +QG + DKL + + D RLL E D L L +
Sbjct: 851 YLEGGDGSDFYVYRSTSGNHTIYDQGKSSDLDKLYLSD--FSFD-RLLVEKVDDNLVLRS 907
Query: 3709 GHDS-----IRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3819
S + +KDW NH IEQIV +G T E
Sbjct: 908 NESSHNNGVLTIKDWFKEGNKYNHK--IEQIVDKNGRKLTAE 947
Score = 57.4 bits (136), Expect = 1e-06
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK 4623
N L GG GDD L S S ++L GG G+D L G +D Y++ G+ TI +QG +
Sbjct: 823 NVLRGGKGDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKSSD 880
Query: 4624 L--VFGAGLSRKEARFTRSGDDLSLLFNGSEDQ---VTVAGWF---NGSGHQVESLVFQD 4779
L ++ + S + D+L L N S +T+ WF N H++E +V ++
Sbjct: 881 LDKLYLSDFSFDRLLVEKVDDNLVLRSNESSHNNGVLTIKDWFKEGNKYNHKIEQIVDKN 940
Query: 4780 GTVLSAE 4800
G L+AE
Sbjct: 941 GRKLTAE 947
Score = 56.2 bits (133), Expect = 2e-06
Identities = 53/125 (42%), Positives = 69/125 (54%), Gaps = 26/125 (20%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADT------------------Y 3072
+N L GG GND L+V + NVL GG GDD LYGS+ +D Y
Sbjct: 803 NNYLSGGDGNDELQV-LGNGFNVLRGGKGDDKLYGSSGSDLLDGGEGNDYLEGGDGSDFY 861
Query: 3073 LFNQGDGHDTIIEQGGT---DKLVFGEGILAADVRLLREGQDVVLDLGNGHDS-----IR 3228
++ G+ TI +QG + DKL + + D RLL E D L L + S +
Sbjct: 862 VYRSTSGNHTIYDQGKSSDLDKLYLSD--FSFD-RLLVEKVDDNLVLRSNESSHNNGVLT 918
Query: 3229 LKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3321
+KDW NH IEQIV +G T E
Sbjct: 919 IKDWFKEGNKYNHK--IEQIVDKNGRKLTAE 947
Score = 55.8 bits (132), Expect = 3e-06
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Frame = +1
Query: 3946 NRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGT-- 4119
N L GG GDD L S S ++L GG G+D L G +D Y++ G+ TI +QG +
Sbjct: 823 NVLRGGKGDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKSSD 880
Query: 4120 -DKLVFGEGILAADVRLLREGQDVVLDLGNGHDS-----IRLKDWLTSNGTRNHSADIEQ 4281
DKL + + D RLL E D L L + S + +KDW NH IEQ
Sbjct: 881 LDKLYLSD--FSFD-RLLVEKVDDNLVLRSNESSHNNGVLTIKDWFKEGNKYNHK--IEQ 935
Query: 4282 IVFADGTLWTPE 4317
IV +G T E
Sbjct: 936 IVDKNGRKLTAE 947
Score = 36.0 bits (81), Expect = 2.9
Identities = 27/74 (36%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 4003 DNVLIGGTGDDTLYGSAFADTYLFNKGD-GHDTIIEQGGTDKLVFGEGILAADVRLLREG 4179
D++L G GDD LYG D +GD G+D + G DKL+ G G + +G
Sbjct: 758 DDLLNGNDGDDILYGDKGNDEL---RGDNGNDQLYGGEGNDKLLGGNG---NNYLSGGDG 811
Query: 4180 QDVVLDLGNGHDSIR 4224
D + LGNG + +R
Sbjct: 812 NDELQVLGNGFNVLR 826
Score = 34.4 bits (77), Expect = 8.5
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 4501 DNVLSGGTGDDTLYGSAFADTYLFNKGD-GHDTIIEQGGTDKLVFGAGLSRKEARFTRSG 4677
D++L+G GDD LYG D +GD G+D + G DKL+ G G +
Sbjct: 758 DDLLNGNDGDDILYGDKGNDEL---RGDNGNDQLYGGEGNDKLLGGNGNNYLSG--GDGN 812
Query: 4678 DDLSLLFNG 4704
D+L +L NG
Sbjct: 813 DELQVLGNG 821
>gi|311827|emb|CAA80500| (Z22886) leukotoxin A [Pasteurella
haemolytica]
Length = 200
Score = 57.8 bits (137), Expect = 8e-07
Identities = 37/117 (31%), Positives = 68/117 (57%), Gaps = 14/117 (11%)
Frame = +1
Query: 4465 GDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGL 4644
GDD++ + D+ + GG G+D L+G D ++ +GDG+D+I E G DKL F +
Sbjct: 2 GDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGNDKLSF-SDS 58
Query: 4645 SRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGS-------------GHQVESLVFQDG- 4782
+ K+ F + L ++ N +++VT+ WF + ++E ++ Q+G
Sbjct: 59 NLKDLTFEKVNHHL-VITNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIEEIIGQNGE 117
Query: 4783 TVLSAEVERLI 4815
+ S +V+ LI
Sbjct: 118 RITSKQVDELI 128
Score = 50.8 bits (119), Expect = 1e-04
Identities = 34/111 (30%), Positives = 60/111 (53%), Gaps = 8/111 (7%)
Frame = +1
Query: 3469 GDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGI 3648
GDD++ + D+ + GG G+D L+G D ++ QGDG+D+I E G DKL F +
Sbjct: 2 GDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGNDKLSFSDSN 59
Query: 3649 LAADVRLLREGQDVVLDLGNGHDSIRLKDWLT----SNGTRNHSA----DIEQIVFADG 3801
L D+ + +V+ + + +++W + RN+ A IE+I+ +G
Sbjct: 60 L-KDLTFEKVNHHLVI-TNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIEEIIGQNG 116
Score = 48.0 bits (112), Expect = 7e-04
Identities = 33/111 (29%), Positives = 60/111 (53%), Gaps = 8/111 (7%)
Frame = +1
Query: 3967 GDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGI 4146
GDD++ + D+ + GG G+D L+G D ++ +GDG+D+I E G DKL F +
Sbjct: 2 GDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGNDKLSFSDSN 59
Query: 4147 LAADVRLLREGQDVVLDLGNGHDSIRLKDWLT----SNGTRNHSA----DIEQIVFADG 4299
L D+ + +V+ + + +++W + RN+ A IE+I+ +G
Sbjct: 60 L-KDLTFEKVNHHLVI-TNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIEEIIGQNG 116
Score = 47.6 bits (111), Expect = 9e-04
Identities = 33/111 (29%), Positives = 60/111 (53%), Gaps = 8/111 (7%)
Frame = +1
Query: 2971 GNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGI 3150
G+D++ + D+ + GG G+D L+G D ++ QGDG+D+I E G DKL F +
Sbjct: 2 GDDIIDGG--NGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSITESEGNDKLSFSDSN 59
Query: 3151 LAADVRLLREGQDVVLDLGNGHDSIRLKDWLT----SNGTRNHSA----DIEQIVFADG 3303
L D+ + +V+ + + +++W + RN+ A IE+I+ +G
Sbjct: 60 L-KDLTFEKVNHHLVI-TNTKQEKVTIQNWFREAEFAKTIRNYVATRDDKIEEIIGQNG 116
>gi|6531347|gb|AAF15370.1|U66588_2 (U66588) PaxA [Pasteurella
aerogenes]
Length = 1049
Score = 56.2 bits (133), Expect = 2e-06
Identities = 56/153 (36%), Positives = 73/153 (47%), Gaps = 25/153 (16%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVS---------------- 3492
GND L+G G D +N L GG GDD L+V
Sbjct: 775 GNDELRGDNGNDQLYGGEGNDKLFGGNGNNYLSGGDGDDELQVLGNGFNVLRGGKGNDKL 834
Query: 3493 YWSA-DNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG---GTDKLVFGEGILAAD 3660
Y A + L GG GDD L G D Y++ G+ TI +QG +D L + L D
Sbjct: 835 YGGAGSDFLDGGEGDDYLAGGEGNDFYVYRSTSGNHTIYDQGKSSDSDTLYLSD--LTFD 892
Query: 3661 VRLLREGQDVVL-----DLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 3819
RLL E D L D + S+ +KDW + NH +EQIV +G T +
Sbjct: 893 -RLLVEKVDNNLVFKPSDHNSNRGSLTIKDWFKTGHGYNHK--LEQIVDKNGRKLTSD 947
Score = 52.7 bits (124), Expect = 3e-05
Identities = 55/152 (36%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVS----------------Y 3993
ND L+G G D +N L GG GDD L+V Y
Sbjct: 776 NDELRGDNGNDQLYGGEGNDKLFGGNGNNYLSGGDGDDELQVLGNGFNVLRGGKGNDKLY 835
Query: 3994 WSA-DNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG---GTDKLVFGEGILAADV 4161
A + L GG GDD L G D Y++ G+ TI +QG +D L + L D
Sbjct: 836 GGAGSDFLDGGEGDDYLAGGEGNDFYVYRSTSGNHTIYDQGKSSDSDTLYLSD--LTFD- 892
Query: 4162 RLLREGQDVVL-----DLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPE 4317
RLL E D L D + S+ +KDW + NH +EQIV +G T +
Sbjct: 893 RLLVEKVDNNLVFKPSDHNSNRGSLTIKDWFKTGHGYNHK--LEQIVDKNGRKLTSD 947
Score = 51.9 bits (122), Expect = 4e-05
Identities = 46/124 (37%), Positives = 62/124 (49%), Gaps = 8/124 (6%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG---G 3120
N L GG GND K+ + + L GG GDD L G D Y++ G+ TI +QG
Sbjct: 823 NVLRGGKGND--KLYGGAGSDFLDGGEGDDYLAGGEGNDFYVYRSTSGNHTIYDQGKSSD 880
Query: 3121 TDKLVFGEGILAADVRLLREGQDVVL-----DLGNGHDSIRLKDWLTSNGTRNHSADIEQ 3285
+D L + L D RLL E D L D + S+ +KDW + NH +EQ
Sbjct: 881 SDTLYLSD--LTFD-RLLVEKVDNNLVFKPSDHNSNRGSLTIKDWFKTGHGYNHK--LEQ 935
Query: 3286 IVFADGTLWTPE 3321
IV +G T +
Sbjct: 936 IVDKNGRKLTSD 947
Score = 48.4 bits (113), Expect = 5e-04
Identities = 39/119 (32%), Positives = 62/119 (51%), Gaps = 11/119 (9%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDK 4623
N L GG G+D K+ + + L GG GDD L G D Y++ G+ TI +QG K
Sbjct: 823 NVLRGGKGND--KLYGGAGSDFLDGGEGDDYLAGGEGNDFYVYRSTSGNHTIYDQG---K 877
Query: 4624 LVFGAGLSRKEARFTR---SGDDLSLLF-----NGSEDQVTVAGWF---NGSGHQVESLV 4770
L + F R D +L+F N + +T+ WF +G H++E +V
Sbjct: 878 SSDSDTLYLSDLTFDRLLVEKVDNNLVFKPSDHNSNRGSLTIKDWFKTGHGYNHKLEQIV 937
Query: 4771 FQDGTVLSAE 4800
++G L+++
Sbjct: 938 DKNGRKLTSD 947
>gi|131060|sp|P16316|PRTB_ERWCH SECRETED PROTEASE B PRECURSOR (PROB)
>gi|95595|pir||A33712 metalloproteinase B (EC 3.4.24.-)
precursor - Erwinia chrysanthemi >gi|148487 (M60395)
neutral protease large subunit [Erwinia chrysanthemi]
>gi|148494 (J04736) protease B precursor [Erwinia
chrysanthemi]
Length = 481
Score = 55.0 bits (130), Expect = 5e-06
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 21/116 (18%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY-------LFNKGDGHDTIIE--- 4605
GG+G+D+L + ADN+L GG GDD LYGS ADT +F G G D+ +
Sbjct: 347 GGSGNDILIGN--GADNILQGGAGDDVLYGSTGADTLTGGAGRDIFVYGSGQDSTVSAYD 404
Query: 4606 -----QGGTDKLVFGA-----GLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGH- 4752
Q G DK+ A LS + +FT G ++ L ++ + + W + +GH
Sbjct: 405 WITDFQTGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSTTNL--WLHEAGHS 462
Query: 4753 QVESLVFQDGTVLSAEV 4803
V+ LV G +++
Sbjct: 463 SVDFLVRIVGQTAQSDI 479
Score = 55.0 bits (130), Expect = 5e-06
Identities = 43/101 (42%), Positives = 51/101 (49%), Gaps = 10/101 (9%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV-- 3135
GG+GND+L + ADN+L GG GDD LYGS ADT G G D + G D V
Sbjct: 347 GGSGNDILIGN--GADNILQGGAGDDVLYGSTGADT--LTGGAGRDIFVYGSGQDSTVSA 402
Query: 3136 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 3264
F GI D+ R EGQ V D G + W +N T N
Sbjct: 403 YDWITDFQTGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSTTN 453
Score = 54.3 bits (128), Expect = 9e-06
Identities = 42/101 (41%), Positives = 51/101 (49%), Gaps = 10/101 (9%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV-- 3633
GG+G+D+L + ADN+L GG GDD LYGS ADT G G D + G D V
Sbjct: 347 GGSGNDILIGN--GADNILQGGAGDDVLYGSTGADT--LTGGAGRDIFVYGSGQDSTVSA 402
Query: 3634 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 3762
F GI D+ R EGQ V D G + W +N T N
Sbjct: 403 YDWITDFQTGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSTTN 453
Score = 53.1 bits (125), Expect = 2e-05
Identities = 42/101 (41%), Positives = 51/101 (49%), Gaps = 10/101 (9%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV-- 4131
GG+G+D+L + ADN+L GG GDD LYGS ADT G G D + G D V
Sbjct: 347 GGSGNDILIGN--GADNILQGGAGDDVLYGSTGADT--LTGGAGRDIFVYGSGQDSTVSA 402
Query: 4132 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 4260
F GI D+ R EGQ V D G + W +N T N
Sbjct: 403 YDWITDFQTGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSTTN 453
>gi|280131|pir||JS0763 triacylglycerol lipase (EC 3.1.1.3) - Serratia
marcescens >gi|216950|dbj|BAA02519| (D13253) lipase
[Serratia marcescens]
Length = 613
Score = 55.0 bits (130), Expect = 5e-06
Identities = 69/245 (28%), Positives = 104/245 (42%), Gaps = 15/245 (6%)
Frame = +1
Query: 3997 SADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 4176
S +IG G+D + G D YL + DG D + GG + + G+G D + +
Sbjct: 366 SGPTFIIGSDGNDLIKGGKGND-YLEGR-DGDDIFRDAGGYNLIAGGKGHNIFDTQQALK 423
Query: 4177 GQDVVLD-----LGNGHDSIRLKDWLTSNGTRN-----HSADIEQIVFADGTLWTPEXXX 4326
+V D L + I L D +++ ++ S +++ V A G L +
Sbjct: 424 NTEVAYDGNTLYLRDAKGGITLADDISTLRSKETSWLIFSKEVDHQVTAAG-LKSDSGLK 482
Query: 4327 XXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 4506
G+D L+ L G AG+D L + + +
Sbjct: 483 AYAAATTGGDGDDVLQARSHDAW------------------LFGNAGNDTL-IGHAGGNL 523
Query: 4507 VLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF-----GAGLSRKEARFTR 4671
GG+GDD L G +T+LF+ G D + TDKLVF +G R A T+
Sbjct: 524 TFVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNATDKLVFIGTEGASGNIRDYA--TQ 581
Query: 4672 SGDDLSLLFNGSEDQVTVAG 4731
DDL L F S QVT+ G
Sbjct: 582 QNDDLVLAFGHS--QVTLIG 599
Score = 51.5 bits (121), Expect = 6e-05
Identities = 63/243 (25%), Positives = 100/243 (40%), Gaps = 11/243 (4%)
Frame = +1
Query: 3001 SADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 3180
S +IG G+D + G D YL + DG D + GG + + G+G D + +
Sbjct: 366 SGPTFIIGSDGNDLIKGGKGND-YLEGR-DGDDIFRDAGGYNLIAGGKGHNIFDTQQALK 423
Query: 3181 GQDVVLD-----LGNGHDSIRLKDWLTSNGTRN-----HSADIEQIVFADGTLWTPEXXX 3330
+V D L + I L D +++ ++ S +++ V A G L +
Sbjct: 424 NTEVAYDGNTLYLRDAKGGITLADDISTLRSKETSWLIFSKEVDHQVTAAG-LKSDSGLK 482
Query: 3331 XXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 3510
G+D L+ L G AG+D L + + +
Sbjct: 483 AYAAATTGGDGDDVLQA------------------RSHDAWLFGNAGNDTL-IGHAGGNL 523
Query: 3511 VLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVF-GEGILAADVRLLREGQD 3687
GG+GDD L G +T+LF+ G D + TDKLVF G + ++R Q+
Sbjct: 524 TFVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNATDKLVFIGTEGASGNIRDYATQQN 583
Query: 3688 VVLDLGNGHDSIRL 3729
L L GH + L
Sbjct: 584 DDLVLAFGHSQVTL 597
Score = 50.0 bits (117), Expect = 2e-04
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
L G AGND L + + + +GG+GDD L G +T+LF+ G D + TDKLV
Sbjct: 506 LFGNAGNDTL-IGHAGGNLTFVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNATDKLV 564
Query: 3136 F-GEGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
F G + ++R Q+ L L GH + L
Sbjct: 565 FIGTEGASGNIRDYATQQNDDLVLAFGHSQVTL 597
Score = 49.6 bits (116), Expect = 2e-04
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Frame = +1
Query: 3505 DNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQ 3684
++++ GG G+D L G DG D + GG + + G+G D + +
Sbjct: 377 NDLIKGGKGNDYLEGR-----------DGDDIFRDAGGYNLIAGGKGHNIFDTQQALKNT 425
Query: 3685 DVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXN 3864
+V D GN ++ L+D + G + DI + + T W +
Sbjct: 426 EVAYD-GN---TLYLRD---AKGGITLADDISTLRSKE-TSWLIFSKEVDHQVTAAGLKS 477
Query: 3865 DT--------LKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIG 4020
D+ G G D+ L G AG+D L + + + +G
Sbjct: 478 DSGLKAYAAATTGGDGDDVLQARSHDAW---------LFGNAGNDTL-IGHAGGNLTFVG 527
Query: 4021 GTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF-GEGILAADVRLLREGQDVVLD 4197
G+GDD L G +T+LF+ G D + TDKLVF G + ++R Q+ L
Sbjct: 528 GSGDDILKGVGNGNTFLFSGDFGRDQLYGFNATDKLVFIGTEGASGNIRDYATQQNDDLV 587
Query: 4198 LGNGHDSIRL 4227
L GH + L
Sbjct: 588 LAFGHSQVTL 597
>gi|131066|sp|P16317|PRTC_ERWCH SECRETED PROTEASE C PRECURSOR (PROC)
>gi|95596|pir||A38307 metalloproteinase C (EC 3.4.24.-)
precursor - Erwinia chrysanthemi >gi|148488 (M60395)
neutral protease large subunit [Erwinia chrysanthemi]
>gi|148492 (M59229) metalloprotease C [Erwinia
chrysanthemi]
Length = 479
Score = 55.0 bits (130), Expect = 5e-06
Identities = 43/101 (42%), Positives = 53/101 (51%), Gaps = 10/101 (9%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV-- 3135
GG+GND+L + SADN+L GG G+D LYG A ADT G G DT + G D V
Sbjct: 345 GGSGNDILVGN--SADNILQGGAGNDVLYGGAGADT--LYGGAGRDTFVYGSGQDSTVAA 400
Query: 3136 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 3264
F +GI D+ R EGQ V D G + W +N N
Sbjct: 401 YDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 451
Score = 54.3 bits (128), Expect = 9e-06
Identities = 42/101 (41%), Positives = 53/101 (51%), Gaps = 10/101 (9%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV-- 3633
GG+G+D+L + SADN+L GG G+D LYG A ADT G G DT + G D V
Sbjct: 345 GGSGNDILVGN--SADNILQGGAGNDVLYGGAGADT--LYGGAGRDTFVYGSGQDSTVAA 400
Query: 3634 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 3762
F +GI D+ R EGQ V D G + W +N N
Sbjct: 401 YDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 451
Score = 53.5 bits (126), Expect = 2e-05
Identities = 39/101 (38%), Positives = 52/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GG+G+D+L + SADN+L GG G+D LYG A ADT G G DT + G D V
Sbjct: 345 GGSGNDILVGN--SADNILQGGAGNDVLYGGAGADT--LYGGAGRDTFVYGSGQDSTVAA 400
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQVT-VAGWFNGSGHQV 4758
A F + D + L +E Q++ V F G G +V
Sbjct: 401 YDWI---ADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEV 439
Score = 53.1 bits (125), Expect = 2e-05
Identities = 42/101 (41%), Positives = 53/101 (51%), Gaps = 10/101 (9%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV-- 4131
GG+G+D+L + SADN+L GG G+D LYG A ADT G G DT + G D V
Sbjct: 345 GGSGNDILVGN--SADNILQGGAGNDVLYGGAGADT--LYGGAGRDTFVYGSGQDSTVAA 400
Query: 4132 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 4260
F +GI D+ R EGQ V D G + W +N N
Sbjct: 401 YDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 451
Score = 48.8 bits (114), Expect = 4e-04
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGD-----GHDTIIE- 4605
N L+GGAG+D VL GG G DTLYG A DT+++ G +D I +
Sbjct: 359 NILQGGAGND-----------VLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADF 407
Query: 4606 QGGTDKLVFGA-----GLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGH-QVESL 4767
Q G DK+ A LS + +FT G ++ L ++ + + W + +GH V+ L
Sbjct: 408 QKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNL--WLHEAGHSSVDFL 465
Query: 4768 VFQDGTVLSAEV 4803
V G +++
Sbjct: 466 VRIVGQAAQSDI 477
>gi|1708221|sp|P55123|LKTA_PASSP LEUKOTOXIN >gi|457618 (L12148)
leukotoxin structural protein [Pasteurella
haemolytica-like sp.] >gi|1581688|prf||2117209B
leukotoxin [Pasteurella haemolytica-like organism]
Length = 947
Score = 55.0 bits (130), Expect = 5e-06
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Frame = +1
Query: 4360 NDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTL 4539
ND KG + ++RL GG G D++ D+ + GG GDD L
Sbjct: 716 NDIFKGSKFDDAFHGGDGVDNIDGNAGNDRLFGGKGFDIIDGG--DGDDFIDGGQGDDIL 773
Query: 4540 YGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQV 4719
+G D KG G+D+I + GG D+L F A + K+ F + L ++ N +++V
Sbjct: 774 HGGKGNDILCTVKG-GNDSISDSGGNDRLSF-ADSNLKDLTFEKVNHHL-MITNVKKEKV 830
Query: 4720 TVAGWFNGSGH-------------QVESLVFQDG-TVLSAEVERLI 4815
T+ WF + + ++E ++ + G + S +++ LI
Sbjct: 831 TIQNWFREADYAKTVHNYQATADEKIEEIIGRQGERITSKQIDELI 876
Score = 43.0 bits (99), Expect = 0.022
Identities = 49/191 (25%), Positives = 73/191 (37%), Gaps = 16/191 (8%)
Frame = +1
Query: 3079 NQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIR---LKDWLTS 3249
N GDG+D + GT ++ G G+ D G L + ++S++
Sbjct: 606 NLGDGNDDVFIGSGTTEVDGGNGL---DRVHYSRGDYGALTIDATNESVQGSYTVKRFVE 662
Query: 3250 NGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLK------GWQGKDIXXXX 3411
G H Q V E DTLK G DI
Sbjct: 663 TGKALHEVTATQSVLVGSREEKIEYRHSNNTQHAGYYTTDTLKSVEEIIGTSRNDIFKGS 722
Query: 3412 XXXXXXXXXXXSNRLEGGAGDDVL-------KVSYWSADNVLSGGTGDDTLYGSAFADTY 3570
+ ++G AG+D L + D+ + GG GDD L+G D
Sbjct: 723 KFDDAFHGGDGVDNIDGNAGNDRLFGGKGFDIIDGGDGDDFIDGGQGDDILHGGKGNDIL 782
Query: 3571 LFNQGDGHDTIIEQGGTDKLVFGEGIL 3651
+G G+D+I + GG D+L F + L
Sbjct: 783 CTVKG-GNDSISDSGGNDRLSFADSNL 808
Score = 37.5 bits (85), Expect = 0.98
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG 3117
++E N+ Y++ D + +IG + +D GS F D F+ GDG D I
Sbjct: 684 KIEYRHSNNTQHAGYYTTDTLKSVEEIIGTSRNDIFKGSKFDDA--FHGGDGVDNIDGNA 741
Query: 3118 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI---RLKDWLTS----NGTRNHSAD 3276
G D+L G+G D+ +G D + D G G D + + D L + N + + S
Sbjct: 742 GNDRLFGGKGF---DIIDGGDGDDFI-DGGQGDDILHGGKGNDILCTVKGGNDSISDSGG 797
Query: 3277 IEQIVFADGTL 3309
+++ FAD L
Sbjct: 798 NDRLSFADSNL 808
Score = 35.6 bits (80), Expect = 3.8
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Frame = +1
Query: 3949 RLEGGAGDDVLKVSYWSADNV-----LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG 4113
++E ++ Y++ D + +IG + +D GS F D F+ GDG D I
Sbjct: 684 KIEYRHSNNTQHAGYYTTDTLKSVEEIIGTSRNDIFKGSKFDDA--FHGGDGVDNIDGNA 741
Query: 4114 GTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSI---RLKDWLTS----NGTRNHSAD 4272
G D+L G+G D+ +G D + D G G D + + D L + N + + S
Sbjct: 742 GNDRLFGGKGF---DIIDGGDGDDFI-DGGQGDDILHGGKGNDILCTVKGGNDSISDSGG 797
Query: 4273 IEQIVFADGTL 4305
+++ FAD L
Sbjct: 798 NDRLSFADSNL 808
>gi|541037|pir||JN0891 metalloproteinase (EC 3.4.24.-) A - Erwinia
chrysanthemi
Length = 479
Score = 53.1 bits (125), Expect = 2e-05
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 20/116 (17%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY------LFNKGDGHDTIIE---- 4605
GG+G+D+L + ADNVL GG GDD LYGS DT +F G G D+
Sbjct: 346 GGSGNDLLVGN--GADNVLQGGAGDDVLYGSTGRDTLVGGRRDIFVYGSGQDSTSSVYDW 403
Query: 4606 ----QGGTDKLVF-----GAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGH-Q 4755
Q G DK+ G LS + +FT G ++ L ++ + + W + +GH
Sbjct: 404 INDFQSGVDKIDLSAFRNGGQLSFVQDQFTGKGQEVMLQWDAASSVTNL--WLHEAGHSS 461
Query: 4756 VESLVFQDGTVLSAEV 4803
V+ LV G +++
Sbjct: 462 VDFLVRIVGQATQSDI 477
Score = 45.3 bits (105), Expect = 0.004
Identities = 30/57 (52%), Positives = 36/57 (62%), Gaps = 14/57 (24%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTY------LFNQGDGHDTIIE---- 3111
GG+GND+L + ADNVL GG GDD LYGS DT +F G G D+
Sbjct: 346 GGSGNDLLVGN--GADNVLQGGAGDDVLYGSTGRDTLVGGRRDIFVYGSGQDSTSSVYDW 403
Query: 3112 ----QGGTDKL 3132
Q G DK+
Sbjct: 404 INDFQSGVDKI 414
Score = 44.5 bits (103), Expect = 0.008
Identities = 29/57 (50%), Positives = 36/57 (62%), Gaps = 14/57 (24%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY------LFNQGDGHDTIIE---- 3609
GG+G+D+L + ADNVL GG GDD LYGS DT +F G G D+
Sbjct: 346 GGSGNDLLVGN--GADNVLQGGAGDDVLYGSTGRDTLVGGRRDIFVYGSGQDSTSSVYDW 403
Query: 3610 ----QGGTDKL 3630
Q G DK+
Sbjct: 404 INDFQSGVDKI 414
Score = 43.0 bits (99), Expect = 0.022
Identities = 29/57 (50%), Positives = 36/57 (62%), Gaps = 14/57 (24%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTY------LFNKGDGHDTIIE---- 4107
GG+G+D+L + ADNVL GG GDD LYGS DT +F G G D+
Sbjct: 346 GGSGNDLLVGN--GADNVLQGGAGDDVLYGSTGRDTLVGGRRDIFVYGSGQDSTSSVYDW 403
Query: 4108 ----QGGTDKL 4128
Q G DK+
Sbjct: 404 INDFQSGVDKI 414
>gi|4467352|emb|CAB37652| (X80056) apxIIIBD [Actinobacillus
pleuropneumoniae]
Length = 223
Score = 52.7 bits (124), Expect = 3e-05
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Frame = +1
Query: 4465 GDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG---GTDKLVFG 4635
GDD L S S ++L GG G+D L G +D Y++ G+ TI +QG +DKL +
Sbjct: 3 GDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKASDSDKL-YL 59
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQ--VTVAGWFNGS---GHQVESLVFQDGTVLSA 4797
+ LS R D+L N + + +T+ WF G H++E +V ++G L+A
Sbjct: 60 SDLSFDNILVKRVNDNLEFRSNNNSNSGVLTIKDWFKGGNSYNHKIEQIVDKNGRKLTA 118
Score = 50.0 bits (117), Expect = 2e-04
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Frame = +1
Query: 3469 GDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG---GTDKLVFG 3639
GDD L S S ++L GG G+D L G +D Y++ G+ TI +QG +DKL
Sbjct: 3 GDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKASDSDKLYLS 60
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDS---IRLKDWLTSNGTRNHSADIEQIVFADG 3801
+ L+ D L++ D + N + + + +KDW + NH IEQIV +G
Sbjct: 61 D--LSFDNILVKRVNDNLEFRSNNNSNSGVLTIKDWFKGGNSYNHK--IEQIVDKNG 113
Score = 48.8 bits (114), Expect = 4e-04
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Frame = +1
Query: 3967 GDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG---GTDKLVFG 4137
GDD L S S ++L GG G+D L G +D Y++ G+ TI +QG +DKL
Sbjct: 3 GDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKASDSDKLYLS 60
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDS---IRLKDWLTSNGTRNHSADIEQIVFADG 4299
+ L+ D L++ D + N + + + +KDW + NH IEQIV +G
Sbjct: 61 D--LSFDNILVKRVNDNLEFRSNNNSNSGVLTIKDWFKGGNSYNHK--IEQIVDKNG 113
Score = 46.9 bits (109), Expect = 0.002
Identities = 38/111 (34%), Positives = 59/111 (52%), Gaps = 6/111 (5%)
Frame = +1
Query: 2971 GNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQG---GTDKLVFG 3141
G+D L S S ++L GG G+D L G +D Y++ G+ TI +QG +DKL
Sbjct: 3 GDDKLYGS--SGSDLLDGGEGNDYLEGGDGSDFYVYRSTSGNHTIYDQGKASDSDKLYLS 60
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDS---IRLKDWLTSNGTRNHSADIEQIVFADG 3303
+ L+ D L++ D + N + + + +KDW + NH IEQIV +G
Sbjct: 61 D--LSFDNILVKRVNDNLEFRSNNNSNSGVLTIKDWFKGGNSYNHK--IEQIVDKNG 113
>gi|541038|pir||JN0892 metalloproteinase (EC 3.4.24.-) B - Erwinia
chrysanthemi
Length = 478
Score = 52.3 bits (123), Expect = 3e-05
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 21/116 (18%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY-------LFNKGDGHDTIIE--- 4605
GG+G+D+L + ADNVL GG G+D LYG+A ADT F G G D+ +
Sbjct: 344 GGSGNDLLVGN--GADNVLQGGAGNDILYGAAGADTLSGGAGRDTFVYGSGQDSTVSAYD 401
Query: 4606 -----QGGTDKLVFGA-----GLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGH- 4752
Q G DK+ A LS + +FT G ++ L ++ + + W + +GH
Sbjct: 402 WINDFQSGADKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNL--WLHEAGHS 459
Query: 4753 QVESLVFQDGTVLSAEV 4803
V+ LV G +++
Sbjct: 460 SVDFLVRIVGQATQSDI 476
Score = 51.9 bits (122), Expect = 4e-05
Identities = 42/101 (41%), Positives = 52/101 (50%), Gaps = 10/101 (9%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV-- 3135
GG+GND+L + ADNVL GG G+D LYG+A ADT + G G DT + G D V
Sbjct: 344 GGSGNDLLVGN--GADNVLQGGAGNDILYGAAGADT--LSGGAGRDTFVYGSGQDSTVSA 399
Query: 3136 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 3264
F G D+ R EGQ V D G + W +N N
Sbjct: 400 YDWINDFQSGADKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 450
Score = 51.2 bits (120), Expect = 8e-05
Identities = 41/101 (40%), Positives = 52/101 (50%), Gaps = 10/101 (9%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV-- 3633
GG+G+D+L + ADNVL GG G+D LYG+A ADT + G G DT + G D V
Sbjct: 344 GGSGNDLLVGN--GADNVLQGGAGNDILYGAAGADT--LSGGAGRDTFVYGSGQDSTVSA 399
Query: 3634 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 3762
F G D+ R EGQ V D G + W +N N
Sbjct: 400 YDWINDFQSGADKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 450
Score = 50.0 bits (117), Expect = 2e-04
Identities = 41/101 (40%), Positives = 52/101 (50%), Gaps = 10/101 (9%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV-- 4131
GG+G+D+L + ADNVL GG G+D LYG+A ADT + G G DT + G D V
Sbjct: 344 GGSGNDLLVGN--GADNVLQGGAGNDILYGAAGADT--LSGGAGRDTFVYGSGQDSTVSA 399
Query: 4132 ------FGEGILAADVRLLR-EGQ-DVVLDLGNGHDSIRLKDWLTSNGTRN 4260
F G D+ R EGQ V D G + W +N N
Sbjct: 400 YDWINDFQSGADKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 450
Score = 39.1 bits (89), Expect = 0.33
Identities = 36/102 (35%), Positives = 50/102 (48%), Gaps = 13/102 (12%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIE------ 3111
N L+GGAGND +L G G DTL G A DT+++ G G D+ +
Sbjct: 358 NVLQGGAGND-----------ILYGAAGADTLSGGAGRDTFVY--GSGQDSTVSAYDWIN 404
Query: 3112 --QGGTDKLVF----GEGILA-ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG 3255
Q G DK+ EG L+ + +GQ+V+L + L WL G
Sbjct: 405 DFQSGADKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNL--WLHEAG 457
Score = 37.1 bits (84), Expect = 1.3
Identities = 35/102 (34%), Positives = 50/102 (48%), Gaps = 13/102 (12%)
Frame = +1
Query: 3946 NRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIE------ 4107
N L+GGAG+D +L G G DTL G A DT+++ G G D+ +
Sbjct: 358 NVLQGGAGND-----------ILYGAAGADTLSGGAGRDTFVY--GSGQDSTVSAYDWIN 404
Query: 4108 --QGGTDKLVF----GEGILA-ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG 4251
Q G DK+ EG L+ + +GQ+V+L + L WL G
Sbjct: 405 DFQSGADKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNL--WLHEAG 457
Score = 36.7 bits (83), Expect = 1.7
Identities = 35/102 (34%), Positives = 50/102 (48%), Gaps = 13/102 (12%)
Frame = +1
Query: 3448 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIE------ 3609
N L+GGAG+D +L G G DTL G A DT+++ G G D+ +
Sbjct: 358 NVLQGGAGND-----------ILYGAAGADTLSGGAGRDTFVY--GSGQDSTVSAYDWIN 404
Query: 3610 --QGGTDKLVF----GEGILA-ADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG 3753
Q G DK+ EG L+ + +GQ+V+L + L WL G
Sbjct: 405 DFQSGADKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNL--WLHEAG 457
>gi|508744 (U11258) extracellular lipase [Serratia marcescens]
Length = 613
Score = 51.9 bits (122), Expect = 4e-05
Identities = 67/245 (27%), Positives = 103/245 (41%), Gaps = 15/245 (6%)
Frame = +1
Query: 3997 SADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 4176
S +IG G+D + G D YL + DG D + GG + + G+G D + +
Sbjct: 367 SGPTFIIGSDGNDLIKGGKGND-YLEGR-DGDDIFRDAGGYNLIAGGKGHNIFDTQQALK 424
Query: 4177 GQDVVLD-----LGNGHDSIRLKDWLTSNGTRNHS-----ADIEQIVFADGTLWTPEXXX 4326
+V D L + I L D +++ ++ S +++ V A G +
Sbjct: 425 NTEVAYDGNTLYLRDAKGGITLADDISTLRSKETSWLIFNKEVDHQVTAAGL--KSDSGL 482
Query: 4327 XXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 4506
G+D L+ L G AG+D L + + +
Sbjct: 483 KAYAAATGGDGDDVLQARSHDAW------------------LFGNAGNDTL-IGHAGGNL 523
Query: 4507 VLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF-----GAGLSRKEARFTR 4671
GG+GDD L G +T+LF+ G D + +DKLVF +G R A T+
Sbjct: 524 TFVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNASDKLVFIGTEGASGNIRDYA--TQ 581
Query: 4672 SGDDLSLLFNGSEDQVTVAG 4731
DDL L F S QVT+ G
Sbjct: 582 QNDDLVLAFGHS--QVTLIG 599
Score = 48.4 bits (113), Expect = 5e-04
Identities = 32/92 (34%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
L G AGND L + + + +GG+GDD L G +T+LF+ G D + +DKLV
Sbjct: 506 LFGNAGNDTL-IGHAGGNLTFVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNASDKLV 564
Query: 3136 F-GEGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
F G + ++R Q+ L L GH + L
Sbjct: 565 FIGTEGASGNIRDYATQQNDDLVLAFGHSQVTL 597
Score = 48.4 bits (113), Expect = 5e-04
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 11/243 (4%)
Frame = +1
Query: 3001 SADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLRE 3180
S +IG G+D + G D YL + DG D + GG + + G+G D + +
Sbjct: 367 SGPTFIIGSDGNDLIKGGKGND-YLEGR-DGDDIFRDAGGYNLIAGGKGHNIFDTQQALK 424
Query: 3181 GQDVVLD-----LGNGHDSIRLKDWLTSNGTRNHS-----ADIEQIVFADGTLWTPEXXX 3330
+V D L + I L D +++ ++ S +++ V A G +
Sbjct: 425 NTEVAYDGNTLYLRDAKGGITLADDISTLRSKETSWLIFNKEVDHQVTAAGL--KSDSGL 482
Query: 3331 XXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADN 3510
G+D L+ L G AG+D L + + +
Sbjct: 483 KAYAAATGGDGDDVLQA------------------RSHDAWLFGNAGNDTL-IGHAGGNL 523
Query: 3511 VLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVF-GEGILAADVRLLREGQD 3687
GG+GDD L G +T+LF+ G D + +DKLVF G + ++R Q+
Sbjct: 524 TFVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNASDKLVFIGTEGASGNIRDYATQQN 583
Query: 3688 VVLDLGNGHDSIRL 3729
L L GH + L
Sbjct: 584 DDLVLAFGHSQVTL 597
Score = 48.0 bits (112), Expect = 7e-04
Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 1/241 (0%)
Frame = +1
Query: 3505 DNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQ 3684
++++ GG G+D L G DG D + GG + + G+G D + +
Sbjct: 378 NDLIKGGKGNDYLEGR-----------DGDDIFRDAGGYNLIAGGKGHNIFDTQQALKNT 426
Query: 3685 DVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXN 3864
+V D GN ++ L+D + G + DI + + T W +
Sbjct: 427 EVAYD-GN---TLYLRD---AKGGITLADDISTLRSKE-TSWLIFNKEVDHQVTAAGLKS 478
Query: 3865 DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLY 4044
D+ G + L G AG+D L + + + +GG+GDD L
Sbjct: 479 DS--GLKAYAAATGGDGDDVLQARSHDAWLFGNAGNDTL-IGHAGGNLTFVGGSGDDILK 535
Query: 4045 GSAFADTYLFNKGDGHDTIIEQGGTDKLVF-GEGILAADVRLLREGQDVVLDLGNGHDSI 4221
G +T+LF+ G D + +DKLVF G + ++R Q+ L L GH +
Sbjct: 536 GVGNGNTFLFSGDFGRDQLYGFNASDKLVFIGTEGASGNIRDYATQQNDDLVLAFGHSQV 595
Query: 4222 RL 4227
L
Sbjct: 596 TL 597
>gi|1465739 (U48223) cell-surface-associated polypeptide
[Synechococcus sp.]
Length = 835
Score = 51.9 bits (122), Expect = 4e-05
Identities = 81/380 (21%), Positives = 124/380 (32%), Gaps = 5/380 (1%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLI--GGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
GG G D L ++ A + L+ G +G+D + G+ G G+DTII +
Sbjct: 268 GGDGADTLSLTAARAGSELVAKGNSGNDKIDGATSESDETIFGGQGNDTIISSADGSRTY 327
Query: 3136 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWT 3315
+G+ DV + + ++ G G DSI + +T+ + H+
Sbjct: 328 YGD--KGDDVISIGTNEASMVSGGEGADSINVNTVVTAADEKFHTV-------------- 371
Query: 3316 PEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY 3495
G DT+ D + AGD V ++
Sbjct: 372 -----------IGGAGVDTIVAAGSTDAKYATSLQYSSFAEFFT------AGDVVDSIT- 413
Query: 3496 WSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD--KLVFGEGILAADVRL 3669
GD T + A+ F D D + GTD + + EG++ A
Sbjct: 414 ----------VGDGTYVKANVAEALSFIDIDSFDRVTMSAGTDGKRTIAAEGLIIATTDA 463
Query: 3670 LREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXX 3849
+ G +V D + D I D S T D
Sbjct: 464 VTTGSSIVFD-SSAEDYIAGIDLSASATTAGSLID--------------------NSAGN 502
Query: 3850 XXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTG 4029
LKG +G + + L GG G D + D +L+GG G
Sbjct: 503 GATQGMILKGTEGDNTILGGDGADQITGGSGGDSLTGGEGADTIDAGTEGTD-ILVGGDG 561
Query: 4030 DDTL-YGSAFADTYLFNKGDGHDTI 4101
DD L + + L GDG DTI
Sbjct: 562 DDYLDLNTDLSKDDLITGGDGTDTI 586
Score = 46.1 bits (107), Expect = 0.003
Identities = 62/284 (21%), Positives = 103/284 (35%), Gaps = 4/284 (1%)
Frame = +1
Query: 2956 LEGGAGNDVLK---VSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTI-IEQGGT 3123
++ AGN + + DN ++GG G D + G + D+ G+G DTI GT
Sbjct: 496 IDNSAGNGATQGMILKGTEGDNTILGGDGADQITGGSGGDS--LTGGEGADTIDAGTEGT 553
Query: 3124 DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADG 3303
D LV G+G D+ D++ G+G D+I S + +++E + +
Sbjct: 554 DILVGGDGDDYLDLNTDLSKDDLITG-GDGTDTIAFSHKSASTNILDRVSEVEVVKLEN- 611
Query: 3304 TLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVL 3483
+ T+ + + S +G
Sbjct: 612 ----------AKDNASITLLDTTIASGKSLTVTTNNASFTGKLTFNASAETDGSVN---- 657
Query: 3484 KVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADV 3663
++GG DT+ GSA ADT FN G GG D + G GI D
Sbjct: 658 ----------VTGGASADTITGSAGADT--FNGG---------GGVDSITGGLGIDFYDF 696
Query: 3664 RLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTL 3807
+ D + D G + ++ T+ S + E + F+D +
Sbjct: 697 STVANWGDTITDYGKSTATANAQN-TTALSNEAISLNGEALAFSDAAI 743
Score = 45.3 bits (105), Expect = 0.004
Identities = 65/283 (22%), Positives = 115/283 (39%), Gaps = 29/283 (10%)
Frame = +1
Query: 3454 LEGGAGDDVLKVSYWSADNVLSGGTGDDTL-----------YGSAFADTYLFNQGDGHDT 3600
++GGA D + + + + + GG D++ YG DT F T
Sbjct: 87 IKGGAAADYITIKGATTNTSVYGGKAADSITFDRAVVGGVVYGDTNKDTITFTDKVSGGT 146
Query: 3601 IIEQGGTD-KLVFGEGILAADVR--------LLREGQDVVLDLGNGHDSIRLKDWLTSNG 3753
I++ G D L F + I + VR + E D ++D G +D++ +
Sbjct: 147 IVDGGADDDSLTFNKRITSVTVRGGAARDAISVAESLDSLVDAGGDNDNLSISG------ 200
Query: 3754 TRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXX-- 3927
+HS I + +G ND++K +
Sbjct: 201 --SHSNLIAK--GGEGADTLDLTLAGTGNRFYGGKDNDSIKIDTAAAVAVHGDNDNDTIE 256
Query: 3928 -XXXXXSNRLEGGAGDDVLKVSYWSADNVLI--GGTGDDTLYGSAFADTYLFNKGDGHDT 4098
+ GG G D L ++ A + L+ G +G+D + G+ G G+DT
Sbjct: 257 IASVVSGASVFGGDGADTLSLTAARAGSELVAKGNSGNDKIDGATSESDETIFGGQGNDT 316
Query: 4099 IIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHS---- 4266
II + +G+ DV + + ++ G G DSI + +T+ + H+
Sbjct: 317 IISSADGSRTYYGD--KGDDVISIGTNEASMVSGGEGADSINVNTVVTAADEKFHTVIGG 374
Query: 4267 ADIEQIVFADGT 4302
A ++ IV A T
Sbjct: 375 AGVDTIVAAGST 386
Score = 39.9 bits (91), Expect = 0.19
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 57/289 (19%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTL-----------YGSAFADTYLFNKGDGHDT 4098
++GGA D + + + + + GG D++ YG DT F T
Sbjct: 87 IKGGAAADYITIKGATTNTSVYGGKAADSITFDRAVVGGVVYGDTNKDTITFTDKVSGGT 146
Query: 4099 IIEQGGTD-KLVFGEGILAADVR--------LLREGQDVVLDLGNGHDSIRLKDW---LT 4242
I++ G D L F + I + VR + E D ++D G +D++ + L
Sbjct: 147 IVDGGADDDSLTFNKRITSVTVRGGAARDAISVAESLDSLVDAGGDNDNLSISGSHSNLI 206
Query: 4243 SNGTRNHSADIEQIVFAD-GTLW-------TPEXXXXXXXXXXXXPGNDTLK------GW 4380
+ G AD + A G + + + NDT++ G
Sbjct: 207 AKG--GEGADTLDLTLAGTGNRFYGGKDNDSIKIDTAAAVAVHGDNDNDTIEIASVVSGA 264
Query: 4381 QXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFAD 4560
+G +G+D + + +D + GG G+DT+ SA
Sbjct: 265 SVFGGDGADTLSLTAARAGSELVAKGNSGNDKIDGATSESDETIFGGQGNDTIISSADGS 324
Query: 4561 -TYLFNKGD-------GHDTIIEQG-GTDKLVFGAGLSRKEARFTR----SGDDLSLLFN 4701
TY +KGD +++ G G D + ++ + +F +G D +++
Sbjct: 325 RTYYGDKGDDVISIGTNEASMVSGGEGADSINVNTVVTAADEKFHTVIGGAGVD-TIVAA 383
Query: 4702 GSED-------QVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIA 4818
GS D Q + F +G V+S+ DGT + A V ++
Sbjct: 384 GSTDAKYATSLQYSSFAEFFTAGDVVDSITVGDGTYVKANVAEALS 429
>gi|100210|pir||S25299 extensin precursor (clone Tom L-4) - tomato
>gi|170444 (M76671) extensin (class II) [Lycopersicon
esculentum]
Length = 322
Score = 50.4 bits (118), Expect = 1e-04
Identities = 34/109 (31%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Frame = -3
Query: 1048 PPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWH---RAPSPPATADRQPHRVCPAPAT 878
PPP HP T P+ P Y H +TP H + PSPP + P P +
Sbjct: 131 PPPTPSYEHPKT----PSPLPPTPSYEHPKTPPSHEHPKTPSPPTPSYEHPKTPSPPTPS 186
Query: 877 HQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPP 722
++H +P P T Y P P + PP PS P P PP
Sbjct: 187 YEHPKTPSPPPPTPSYEH-----PQPQSPPPPPTPSYEHPKTPSHPTPPTPP 233
Score = 41.4 bits (95), Expect = 0.066
Identities = 32/123 (26%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
Frame = -3
Query: 1090 HPDIPESTAAQPLW--PPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
HP P P + P P P P + +P P + TP + P PP +
Sbjct: 189 HPKTPSPPPPTPSYEHPQPQSPPPPPTPSYEHPKT----PSHPTPPTPPCNEPPPPPPNS 244
Query: 916 DRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRN 737
+P P + P +P P T +Y+ P P PP S+ P N
Sbjct: 245 HWEPKPSPPYTYSSPPPPSPSPPPPTYYYSSP----PPPSPSPPPPTYSSPPPPPPFYEN 300
Query: 736 LPHPP 722
+P PP
Sbjct: 301 IPLPP 305
>gi|4558791|gb|AAD22743.1| (AF069748) polyurethanase esterase A
[Pseudomonas chlororaphis]
Length = 617
Score = 49.6 bits (116), Expect = 2e-04
Identities = 61/241 (25%), Positives = 99/241 (40%), Gaps = 14/241 (5%)
Frame = +1
Query: 3505 DNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQ 3684
++++ GG+G+D L G A G+DT + GG + ++ G+G D++ +
Sbjct: 377 NDLIQGGSGNDYLEGRA-----------GNDTFRDSGGYNIILGGQGSNTLDLQQSVKNY 425
Query: 3685 DVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFAD-GTLW--------TPEXXXXXX 3837
D G ++ L+D +NG + + DI I + G LW
Sbjct: 426 SFASD---GAGTLYLRD---ANGGISMTRDIGAIQSKEPGFLWGLFKDDVIHQVTDQGLK 479
Query: 3838 XXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLI 4017
+++G G ++ ++ L GG G+D V +
Sbjct: 480 AGGQLTQYASSVRGDAGDNVLKAHAGGDWLFGLDGNDHLIGGQGND-----------VFV 528
Query: 4018 GGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF--GEGILAAD---VRLLREGQ 4182
GG G+D + +T+LF G D I+ G DKLVF G+L G
Sbjct: 529 GGAGNDLMEAGGGNNTFLFTGHFGQDRILGYQGGDKLVFMGVSGVLPDQDYRAHASSSGN 588
Query: 4183 DVVLDLGNGHDSIRL 4227
D VL G DS+ L
Sbjct: 589 DTVLTF--GQDSVTL 601
Score = 48.4 bits (113), Expect = 5e-04
Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 27/246 (10%)
Frame = +1
Query: 4012 LIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVV 4191
+IG G+D + G + D YL + G+DT + GG + ++ G+G D++ +
Sbjct: 371 IIGSDGNDLIQGGSGND-YLEGRA-GNDTFRDSGGYNIILGGQGSNTLDLQQSVKNYSFA 428
Query: 4192 LDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFAD-GTLWTPEXXXXXXXXXXXXPGNDT 4368
D G ++ L+D +NG + + DI I + G LW
Sbjct: 429 SD---GAGTLYLRD---ANGGISMTRDIGAIQSKEPGFLWG------------------- 463
Query: 4369 LKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSY---W-------------SA 4500
L ++ + G AGD+VLK W
Sbjct: 464 LFKDDVIHQVTDQGLKAGGQLTQYASSVRGDAGDNVLKAHAGGDWLFGLDGNDHLIGGQG 523
Query: 4501 DNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAGLS------RKEAR 4662
++V GG G+D + +T+LF G D I+ G DKLVF G+S A
Sbjct: 524 NDVFVGGAGNDLMEAGGGNNTFLFTGHFGQDRILGYQGGDKLVF-MGVSGVLPDQDYRAH 582
Query: 4663 FTRSGDDLSLLFNGSEDQVTVAG----WFNGSG 4749
+ SG+D L F +D VT+ G NGSG
Sbjct: 583 ASSSGNDTVLTF--GQDSVTLVGVSLEHLNGSG 613
Score = 47.6 bits (111), Expect = 9e-04
Identities = 66/256 (25%), Positives = 103/256 (39%), Gaps = 14/256 (5%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
G GND+++ GG+G+D L G A G+DT + GG + ++ G
Sbjct: 373 GSDGNDLIQ-----------GGSGNDYLEGRA-----------GNDTFRDSGGYNIILGG 410
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFAD-GTLW-- 3312
+G D++ + D G ++ L+D +NG + + DI I + G LW
Sbjct: 411 QGSNTLDLQQSVKNYSFASD---GAGTLYLRD---ANGGISMTRDIGAIQSKEPGFLWGL 464
Query: 3313 -TPEXXXXXXXXXXXXPGN-----DTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGD 3474
+ G +++G G ++ ++ L GG G+
Sbjct: 465 FKDDVIHQVTDQGLKAGGQLTQYASSVRGDAGDNVLKAHAGGDWLFGLDGNDHLIGGQGN 524
Query: 3475 DVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVF--GEGI 3648
D V GG G+D + +T+LF G D I+ G DKLVF G+
Sbjct: 525 D-----------VFVGGAGNDLMEAGGGNNTFLFTGHFGQDRILGYQGGDKLVFMGVSGV 573
Query: 3649 LAAD---VRLLREGQDVVLDLGNGHDSIRL 3729
L G D VL G DS+ L
Sbjct: 574 LPDQDYRAHASSSGNDTVLTF--GQDSVTL 601
Score = 40.6 bits (93), Expect = 0.11
Identities = 33/95 (34%), Positives = 43/95 (44%), Gaps = 5/95 (5%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
++ L GG GNDV +GG G+D + +T+LF G D I+ G D
Sbjct: 515 NDHLIGGQGNDVF-----------VGGAGNDLMEAGGGNNTFLFTGHFGQDRILGYQGGD 563
Query: 3127 KLVF--GEGILAAD---VRLLREGQDVVLDLGNGHDSIRL 3231
KLVF G+L G D VL G DS+ L
Sbjct: 564 KLVFMGVSGVLPDQDYRAHASSSGNDTVLTF--GQDSVTL 601
>gi|3873279 (AF099799) mannuronan C-5-epimerase AlgE6 [Azotobacter
vinelandii]
Length = 874
Score = 49.2 bits (115), Expect = 3e-04
Identities = 125/470 (26%), Positives = 176/470 (36%), Gaps = 46/470 (9%)
Frame = +1
Query: 3376 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSA 3555
+G G D+ +RL+GGAGDD+L GG G D L G
Sbjct: 382 QGTDGNDVLIGSDVGEQISGGAGDDRLDGGAGDDLL-----------DGGAGRDRLTGGL 430
Query: 3556 FADTYLFN-QGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLK 3732
ADT+ F + D H + + L F DV L + LGNG+ L
Sbjct: 431 GADTFRFALREDSHRSPLGTFSDLILDFDPSQDKIDVSALG-----FIGLGNGYAG-TLA 484
Query: 3733 DWLTSNGTR---------------------NHSADIE--QIVFADGTLWTPEXXXXXXXX 3843
L+++G R NH+A + IVFA TP
Sbjct: 485 VSLSADGLRTYLKSYDADAQGRSFELALDGNHAATLSAGNIVFAAA---TPVDPSAEAQP 541
Query: 3844 XXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGG 4023
+D L G + GG G D L Y D +L GG
Sbjct: 542 IVGSDLDDQLHG------------------TLLGEEISGGGGADQL-YGYGGGD-LLDGG 581
Query: 4024 TGDDTLYGSAFADTYLFN-KGDGH--------DTIIEQGGT-DKLVFGEGILAADVRLLR 4173
G D L G ADT+ F + D H D I++ T DKL + A L
Sbjct: 582 AGRDRLTGGEGADTFRFALREDSHRSAAGTFSDLILDFDPTQDKL----DVSALGFTGLG 637
Query: 4174 EGQDVVLDLGNGHDSIR--LKDWLTSNGTRNHSADIE----QIVFADGTLWTPEXXXXXX 4335
G L + D R LK + T R+ ++ + AD L+
Sbjct: 638 NGYAGTLAVSVSDDGTRTYLKSYETDAEGRSFEVSLQGNHAAALSADNILFATPVPVDPG 697
Query: 4336 XXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLS 4515
G+D S ++ GG G D ++ ++ +++L
Sbjct: 698 VEGTPVVGSD---------------LDDELHGTLGSEQILGGGGAD--QLYGYAGNDLLD 740
Query: 4516 GGTGDDTLYGSAFADTYLFN-KGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLSL 4692
GG G D L G ADT+ F + D H + + GT FG D L
Sbjct: 741 GGAGRDKLSGGEGADTFRFALREDSHRSPL---GT----FG---------------DRIL 778
Query: 4693 LFNGSEDQVTV-----AGWFNGSGHQVESLVFQDGT 4785
F+ S+D++ V +G NG + V DGT
Sbjct: 779 DFDPSQDRIDVSALGFSGLGNGYAGSLAVSVSDDGT 814
Score = 48.0 bits (112), Expect = 7e-04
Identities = 77/304 (25%), Positives = 113/304 (36%), Gaps = 8/304 (2%)
Frame = +1
Query: 3874 KGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSA 4053
+G G D+ +RL+GGAGDD+L GG G D L G
Sbjct: 382 QGTDGNDVLIGSDVGEQISGGAGDDRLDGGAGDDLLD-----------GGAGRDRLTGGL 430
Query: 4054 FADTYLFN-KGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLK 4230
ADT+ F + D H + + L F DV L + LGNG+ L
Sbjct: 431 GADTFRFALREDSHRSPLGTFSDLILDFDPSQDKIDVSALG-----FIGLGNGYAG-TLA 484
Query: 4231 DWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXX 4410
L+++G R + + AD + E GN
Sbjct: 485 VSLSADGLRTYLKSYD----ADAQGRSFELALDGNHAATLSAGN------------IVFA 528
Query: 4411 XXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGH 4590
+ + G DD L + + +SGG G D LYG D L + G G
Sbjct: 529 AATPVDPSAEAQPIVGSDLDDQLHGTLLGEE--ISGGGGADQLYGYGGGD--LLDGGAGR 584
Query: 4591 DTIIEQGGTDKLVFGAGLSRKEARFTRSG--DDLSLLFNGSEDQVTVA-----GWFNGSG 4749
D + G D F R+++ + +G DL L F+ ++D++ V+ G NG
Sbjct: 585 DRLTGGEGADTFRFAL---REDSHRSAAGTFSDLILDFDPTQDKLDVSALGFTGLGNGYA 641
Query: 4750 HQVESLVFQDGT 4785
+ V DGT
Sbjct: 642 GTLAVSVSDDGT 653
Score = 37.9 bits (86), Expect = 0.75
Identities = 71/279 (25%), Positives = 109/279 (38%), Gaps = 11/279 (3%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+ GG G D L Y D +L GG G D L G ADT+ F + D+ GT
Sbjct: 560 ISGGGGADQL-YGYGGGD-LLDGGAGRDRLTGGEGADTFRFALRE--DSHRSAAGT---- 611
Query: 3136 FGEGILAADVRLLREGQDV----VLDLGNGHD---SIRLKDWLTSNGTRNHSADIEQIVF 3294
F + IL D ++ DV LGNG+ ++ + D T +++ D E F
Sbjct: 612 FSDLIL--DFDPTQDKLDVSALGFTGLGNGYAGTLAVSVSDDGTRTYLKSYETDAEGRSF 669
Query: 3295 ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGD 3474
+ +L G +G + L GG D
Sbjct: 670 -EVSLQGNHAAALSADNILFATPVPVDPGVEGTPVVGSDLDDELHGTLGSEQILGGGGAD 728
Query: 3475 DVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFN-QGDGHDTIIEQGGTDKLVFGEGIL 3651
+ ++ +++L GG G D L G ADT+ F + D H + + G L F
Sbjct: 729 QLYG---YAGNDLLDGGAGRDKLSGGEGADTFRFALREDSHRSPLGTFGDRILDFDPSQD 785
Query: 3652 AADVRLLREGQDVVLDLGNGHD---SIRLKDWLTSNGTRNHSADIEQIVF 3792
DV L LGNG+ ++ + D T +++ AD + + F
Sbjct: 786 RIDVSALG-----FSGLGNGYAGSLAVSVSDDGTRTYLKSYEADAQGLSF 830
>gi|4468710|emb|CAB38101.1| (AJ225896) endo-1,3-1,4-beta glycanase
[Sinorhizobium meliloti]
Length = 465
Score = 48.8 bits (114), Expect = 4e-04
Identities = 41/125 (32%), Positives = 65/125 (51%), Gaps = 19/125 (15%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
SN + GG+G+ + GG G+D L G+ ADT+ F +G+G D I + G D
Sbjct: 110 SNIISGGSGSQTIN-----------GGAGNDVLTGAGGADTFAFKRGNGSDLISDFGSDD 158
Query: 3127 KL-VFGEGILAAD---VRLLREGQDVVLDLGNGHDSI---RLKDWLTSNG---------- 3255
+ + G G + D + +EG D+ L L +G + D L +N
Sbjct: 159 VVRLEGYGFTSFDHILANVAQEGLDLKLSLADGEYLVFANTSADQLHANQFSLALDRSVL 218
Query: 3256 TRNHSADIEQIVFADGT--LWTPE 3321
T+ S D + +DGT +W P+
Sbjct: 219 TQTFSDDFNTLQLSDGTSGVWDPK 242
Score = 48.8 bits (114), Expect = 4e-04
Identities = 41/125 (32%), Positives = 64/125 (50%), Gaps = 19/125 (15%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4122
SN + GG+G + GG G+D L G+ ADT+ F +G+G D I + G D
Sbjct: 110 SNIISGGSGSQTIN-----------GGAGNDVLTGAGGADTFAFKRGNGSDLISDFGSDD 158
Query: 4123 KL-VFGEGILAAD---VRLLREGQDVVLDLGNGHDSI---RLKDWLTSNG---------- 4251
+ + G G + D + +EG D+ L L +G + D L +N
Sbjct: 159 VVRLEGYGFTSFDHILANVAQEGLDLKLSLADGEYLVFANTSADQLHANQFSLALDRSVL 218
Query: 4252 TRNHSADIEQIVFADGT--LWTPE 4317
T+ S D + +DGT +W P+
Sbjct: 219 TQTFSDDFNTLQLSDGTSGVWDPK 242
Score = 48.8 bits (114), Expect = 4e-04
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 19/111 (17%)
Frame = +1
Query: 3487 VSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKL-VFGEGILAAD- 3660
+S S ++GG G+D L G+ ADT+ F +G+G D I + G D + + G G + D
Sbjct: 113 ISGGSGSQTINGGAGNDVLTGAGGADTFAFKRGNGSDLISDFGSDDVVRLEGYGFTSFDH 172
Query: 3661 --VRLLREGQDVVLDLGNGHDSI---RLKDWLTSNG----------TRNHSADIEQIVFA 3795
+ +EG D+ L L +G + D L +N T+ S D + +
Sbjct: 173 ILANVAQEGLDLKLSLADGEYLVFANTSADQLHANQFSLALDRSVLTQTFSDDFNTLQLS 232
Query: 3796 DGT--LWTPE 3819
DGT +W P+
Sbjct: 233 DGTSGVWDPK 242
Score = 44.5 bits (103), Expect = 0.008
Identities = 38/128 (29%), Positives = 59/128 (45%), Gaps = 4/128 (3%)
Frame = +1
Query: 4483 VSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKL-VFGAGLSRKE- 4656
+S S ++GG G+D L G+ ADT+ F +G+G D I + G D + + G G + +
Sbjct: 113 ISGGSGSQTINGGAGNDVLTGAGGADTFAFKRGNGSDLISDFGSDDVVRLEGYGFTSFDH 172
Query: 4657 --ARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIAAMAL 4830
A + G DL L E V + N S Q+ + F S ++R +
Sbjct: 173 ILANVAQEGLDLKLSLADGEYLV----FANTSADQLHANQF------SLALDRSVLTQTF 222
Query: 4831 SPAVTTMQASVG 4866
S T+Q S G
Sbjct: 223 SDDFNTLQLSDG 234
>gi|730410|sp|Q07295|PRTA_ERWCH SECRETED PROTEASE A PRECURSOR (PROA)
>gi|419548|pir||S30160 metalloproteinase (EC 3.4.24.-) A
- Erwinia chrysanthemi >gi|297898|emb|CAA49611| (X70011)
protease A [Erwinia chrysanthemi]
Length = 472
Score = 46.9 bits (109), Expect = 0.002
Identities = 35/97 (36%), Positives = 43/97 (44%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GG+GND+L + +ADN+L GG GDD LYG AD G G DT + +D V
Sbjct: 338 GGSGNDLLIGN--NADNILRGGAGDDILYGGGGADR--LYGGSGRDTFVYTAVSDSKV-- 391
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 3252
D +LD G D I L T N
Sbjct: 392 ------------AAPDWILDFQTGVDKIDLSALNTGN 416
Score = 46.1 bits (107), Expect = 0.003
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV-- 4629
GG+G+D+L + +ADN+L GG GDD LYG AD G G DT + +D V
Sbjct: 338 GGSGNDLLIGN--NADNILRGGAGDDILYGGGGADR--LYGGSGRDTFVYTAVSDSKVAA 393
Query: 4630 ------FGAGLSRKEARFTRSGDDLSLL--FNGSEDQV 4719
F G+ + + +G++L + F+GS ++
Sbjct: 394 PDWILDFQTGVDKIDLSALNTGNNLHFVNQFSGSGGEI 431
Score = 45.7 bits (106), Expect = 0.003
Identities = 34/97 (35%), Positives = 43/97 (44%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GG+G+D+L + +ADN+L GG GDD LYG AD G G DT + +D V
Sbjct: 338 GGSGNDLLIGN--NADNILRGGAGDDILYGGGGADR--LYGGSGRDTFVYTAVSDSKV-- 391
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 3750
D +LD G D I L T N
Sbjct: 392 ------------AAPDWILDFQTGVDKIDLSALNTGN 416
Score = 44.9 bits (104), Expect = 0.006
Identities = 34/97 (35%), Positives = 43/97 (44%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GG+G+D+L + +ADN+L GG GDD LYG AD G G DT + +D V
Sbjct: 338 GGSGNDLLIGN--NADNILRGGAGDDILYGGGGADR--LYGGSGRDTFVYTAVSDSKV-- 391
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 4248
D +LD G D I L T N
Sbjct: 392 ------------AAPDWILDFQTGVDKIDLSALNTGN 416
Score = 36.4 bits (82), Expect = 2.2
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLF-----NKGDGHDTIIE- 4605
N L GGAGDD +L GG G D LYG + DT+++ +K D I++
Sbjct: 352 NILRGGAGDD-----------ILYGGGGADRLYGGSGRDTFVYTAVSDSKVAAPDWILDF 400
Query: 4606 QGGTDKLVFGAGLSRKEARFTR--SGDDLSLLFN 4701
Q G DK+ A + F SG +L N
Sbjct: 401 QTGVDKIDLSALNTGNNLHFVNQFSGSGGEILLN 434
Score = 36.0 bits (81), Expect = 2.9
Identities = 25/61 (40%), Positives = 34/61 (54%), Gaps = 6/61 (9%)
Frame = +1
Query: 3946 NRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF-----NKGDGHDTIIE- 4107
N L GGAGDD +L GG G D LYG + DT+++ +K D I++
Sbjct: 352 NILRGGAGDD-----------ILYGGGGADRLYGGSGRDTFVYTAVSDSKVAAPDWILDF 400
Query: 4108 QGGTDKL 4128
Q G DK+
Sbjct: 401 QTGVDKI 407
>gi|3135220|dbj|BAA28268| (AB013895) metalloprotease [Pseudomonas
fluorescens]
Length = 476
Score = 46.5 bits (108), Expect = 0.002
Identities = 64/237 (27%), Positives = 96/237 (40%), Gaps = 18/237 (7%)
Frame = +1
Query: 4039 LYGSAFAD-----TYLFNKGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLG 4203
LYG+ ++ TY FN G D DKLVF V D G
Sbjct: 256 LYGANYSTRAGDTTYGFNSNTGRDFYSATSNADKLVFS-----------------VWD-G 297
Query: 4204 NGHDSIRLKDWLTSNGTRNHSADIEQIVFAD--GTLWTPEXXXXXXXXXXXXPGNDTLKG 4377
G+D++ S T+N ++ + F+D G + GND + G
Sbjct: 298 GGNDTLDF-----SGFTQNQKINLNEASFSDVGGLVGNVSIAKGVTIENFGGSGNDLIIG 352
Query: 4378 WQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFA 4557
+N ++GGAG+D ++ GG G D L+G A
Sbjct: 353 ------------------NNAANVIKGGAGND-----------IIYGGGGADQLWGGAGN 383
Query: 4558 DTYLF-----NKGDGHDTIIE-QGGTDK-----LVFGAGLSRKEARFTRSGDDLSLLFNG 4704
DT+++ +K D I + G+DK + GAGL+ A FT D L +
Sbjct: 384 DTFVYGASSDSKPGASDKIFDFTSGSDKIDLSGITKGAGLTFVNA-FTGHAGDAVLTYAA 442
Query: 4705 SEDQVTVAGWFNGSG 4749
+ T+A F+G G
Sbjct: 443 GTNLGTLAVDFSGHG 457
Score = 39.9 bits (91), Expect = 0.19
Identities = 56/214 (26%), Positives = 84/214 (39%), Gaps = 24/214 (11%)
Frame = +1
Query: 3487 VSYWSADNV------------LSGGTGDDT-----LYGSAFAD-----TYLFNQGDGHDT 3600
+SYWS N SG DD LYG+ ++ TY FN G D
Sbjct: 221 MSYWSESNTNQNFSKGGVEAYASGPLIDDIAAIQKLYGANYSTRAGDTTYGFNSNTGRDF 280
Query: 3601 IIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 3780
DKLVF V D G G+D++ S T+N ++
Sbjct: 281 YSATSNADKLVFS-----------------VWD-GGGNDTLDF-----SGFTQNQKINLN 317
Query: 3781 QIVFAD--GTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRL 3954
+ F+D G + ND + G +N +
Sbjct: 318 EASFSDVGGLVGNVSIAKGVTIENFGGSGNDLIIG------------------NNAANVI 359
Query: 3955 EGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKL 4128
+GGAG+D ++ GG G D L+G A DT+++ G + + G +DK+
Sbjct: 360 KGGAGND-----------IIYGGGGADQLWGGAGNDTFVY----GASSDSKPGASDKI 402
Score = 39.5 bits (90), Expect = 0.25
Identities = 48/196 (24%), Positives = 75/196 (37%), Gaps = 7/196 (3%)
Frame = +1
Query: 3043 LYGSAFAD-----TYLFNQGDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLG 3207
LYG+ ++ TY FN G D DKLVF V D G
Sbjct: 256 LYGANYSTRAGDTTYGFNSNTGRDFYSATSNADKLVFS-----------------VWD-G 297
Query: 3208 NGHDSIRLKDWLTSNGTRNHSADIEQIVFAD--GTLWTPEXXXXXXXXXXXXPGNDTLKG 3381
G+D++ S T+N ++ + F+D G + GND + G
Sbjct: 298 GGNDTLDF-----SGFTQNQKINLNEASFSDVGGLVGNVSIAKGVTIENFGGSGNDLIIG 352
Query: 3382 WQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFA 3561
+N ++GGAG+D ++ GG G D L+G A
Sbjct: 353 ------------------NNAANVIKGGAGND-----------IIYGGGGADQLWGGAGN 383
Query: 3562 DTYLFNQGDGHDTIIEQGGTDKL 3630
DT+++ G + + G +DK+
Sbjct: 384 DTFVY----GASSDSKPGASDKI 402
Score = 36.7 bits (83), Expect = 1.7
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
GG+GND++ + +A NV+ GG G+D +YG AD G G+DT + +D
Sbjct: 343 GGSGNDLIIGN--NAANVIKGGAGNDIIYGGGGADQLW--GGAGNDTFVYGASSD 393
>gi|3493595|gb|AAC33448.1| (AF064762) ZapE [Proteus mirabilis]
Length = 687
Score = 46.5 bits (108), Expect = 0.002
Identities = 57/220 (25%), Positives = 85/220 (37%), Gaps = 1/220 (0%)
Frame = +1
Query: 2983 LKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEGILAAD 3162
+ ++Y + IGG+G DT+ G++ + L GDG+DTI G D L G G
Sbjct: 427 ISIAYKTIIENAIGGSGHDTIIGNSANNELL--GGDGNDTIDGGLGNDHLYGGMG----- 479
Query: 3163 VRLLREGQDVVL-DLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXX 3339
D++ D+GN D+L
Sbjct: 480 -------NDILYGDIGN--------DYLYGG----------------------------- 495
Query: 3340 XXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLS 3519
G+D L G G DI +++L GG GDD L V Y+ + N
Sbjct: 496 ------IGDDILHGGMGNDILHGSMGNDYLYGNKGNDQLFGGDGDDTL-VDYYGS-NTFI 547
Query: 3520 GGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGE 3642
GG G+D L+ + A G+G+D GT+ L++GE
Sbjct: 548 GGKGNDLLFSISKAGHNELQGGEGNDIFYCGLGTN-LLYGE 587
Score = 44.5 bits (103), Expect = 0.008
Identities = 49/186 (26%), Positives = 73/186 (38%)
Frame = +1
Query: 3583 GDGHDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRN 3762
G GHDTII ++L+ G+G + +D G G+D + G N
Sbjct: 441 GSGHDTIIGNSANNELLGGDG-------------NDTIDGGLGNDHL-------YGGMGN 480
Query: 3763 HSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXX 3942
I++ D +D L G G DI
Sbjct: 481 ------DILYGD----------IGNDYLYGGIGDDILHGGMGNDILHGSMGNDYLYGNKG 524
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4122
+++L GG GDD L V Y+ + N IGG G+D L+ + A G+G+D GT+
Sbjct: 525 NDQLFGGDGDDTL-VDYYGS-NTFIGGKGNDLLFSISKAGHNELQGGEGNDIFYCGLGTN 582
Query: 4123 KLVFGE 4140
L++GE
Sbjct: 583 -LLYGE 587
Score = 43.0 bits (99), Expect = 0.022
Identities = 31/94 (32%), Positives = 45/94 (46%), Gaps = 7/94 (7%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS-------ADNVLIG 4020
ND L G G DI + L GG G+D+L S + ++ L G
Sbjct: 471 NDHLYGGMGNDILYGDIGNDYLYGGIGDDILHGGMGNDILHGSMGNDYLYGNKGNDQLFG 530
Query: 4021 GTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGEG 4143
G GDDTL ++T++ KG+ I + G ++L GEG
Sbjct: 531 GDGDDTLVDYYGSNTFIGGKGNDLLFSISKAGHNELQGGEG 571
Score = 43.0 bits (99), Expect = 0.022
Identities = 31/95 (32%), Positives = 46/95 (47%), Gaps = 7/95 (7%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS-------ADNVLS 3519
GND L G G DI + L GG G+D+L S + ++ L
Sbjct: 470 GNDHLYGGMGNDILYGDIGNDYLYGGIGDDILHGGMGNDILHGSMGNDYLYGNKGNDQLF 529
Query: 3520 GGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEG 3645
GG GDDTL ++T++ +G+ I + G ++L GEG
Sbjct: 530 GGDGDDTLVDYYGSNTFIGGKGNDLLFSISKAGHNELQGGEG 571
Score = 43.0 bits (99), Expect = 0.022
Identities = 30/95 (31%), Positives = 47/95 (48%), Gaps = 14/95 (14%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS-------ADNVLS 4515
G+DT+ G ++ L GG G+D+L + D++L
Sbjct: 443 GHDTIIGNSANNELLGGDGNDTIDGGLGNDHLYGGMGNDILYGDIGNDYLYGGIGDDILH 502
Query: 4516 GGTGDDTLYGSAFADTYLFNK-------GDGHDTIIEQGGTDKLVFGAG 4641
GG G+D L+GS D NK GDG DT+++ G++ + G G
Sbjct: 503 GGMGNDILHGSMGNDYLYGNKGNDQLFGGDGDDTLVDYYGSNTFIGGKG 551
Score = 43.0 bits (99), Expect = 0.022
Identities = 26/67 (38%), Positives = 43/67 (63%), Gaps = 15/67 (22%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWS-------ADNVLIGGTGDDTLYGSAFADTYLFNQ------- 3084
++ L GG GND+L + D++L GG G+D L+GS + YL+
Sbjct: 471 NDHLYGGMGNDILYGDIGNDYLYGGIGDDILHGGMGNDILHGS-MGNDYLYGNKGNDQLF 529
Query: 3085 -GDGHDTIIEQGGTDKLVFGEG 3147
GDG DT+++ G++ + G+G
Sbjct: 530 GGDGDDTLVDYYGSNTFIGGKG 551
Score = 37.5 bits (85), Expect = 0.98
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWS-------ADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQ 3114
L GG GND+L S + ++ L GG GDDTL ++T++ +G+ I +
Sbjct: 501 LHGGMGNDILHGSMGNDYLYGNKGNDQLFGGDGDDTLVDYYGSNTFIGGKGNDLLFSISK 560
Query: 3115 GGTDKLVFGEG 3147
G ++L GEG
Sbjct: 561 AGHNELQGGEG 571
Score = 36.0 bits (81), Expect = 2.9
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Frame = +1
Query: 4357 GNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWS-------ADNVLS 4515
GND L G + L GG G+D+L S + ++ L
Sbjct: 470 GNDHLYGGMGNDILYGDIGNDYLYGGIGDDILHGGMGNDILHGSMGNDYLYGNKGNDQLF 529
Query: 4516 GGTGDDTLYGSAFADTYLFNKGD---------GHDTIIEQGGTDKLVFGAGLSRKEARFT 4668
GG GDDTL ++T++ KG+ GH+ + QGG +F GL
Sbjct: 530 GGDGDDTLVDYYGSNTFIGGKGNDLLFSISKAGHNEL--QGGEGNDIFYCGLGTNLLYGE 587
Query: 4669 RSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIAAMALS 4833
+ D + L + + FN + + ++F D ++ ++ LS
Sbjct: 588 QGNDTFNFLCHKGAKSYNLIFDFNTN---EDKIIFVDQNYKKIDISKMKRVEQLS 639
Score = 35.2 bits (79), Expect = 5.0
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
+++L GG G+D L V Y+ + N IGG G+D L+ + A G+G+D GT+
Sbjct: 525 NDQLFGGDGDDTL-VDYYGS-NTFIGGKGNDLLFSISKAGHNELQGGEGNDIFYCGLGTN 582
Query: 3127 KLVFGE 3144
L++GE
Sbjct: 583 -LLYGE 587
>gi|1652953|dbj|BAA17871| (D90909) hemolysin [Synechocystis sp.]
Length = 1741
Score = 46.1 bits (107), Expect = 0.003
Identities = 134/514 (26%), Positives = 204/514 (39%), Gaps = 70/514 (13%)
Frame = +1
Query: 3022 GGTGDDTLYGS------AFADTYLFNQGDGHDTIIEQGGTDKLVFGEG--ILAA----DV 3165
GG GDDTL G F + L N +G+D + G D L GEG I++ D
Sbjct: 1041 GGAGDDTLVGGDGDPILGFGNDIL-NGDEGNDFLFGGKGNDNLQGGEGDDIMSGGEGDDF 1099
Query: 3166 RLLREGQDVVLDLGNGHD--------------SIR-LKDWLTSNGTRNHSADIEQIVFAD 3300
+ G DV+ DLG+ + IR ++DW + T N + A
Sbjct: 1100 FFVDAGFDVIEDLGDANSETGDQFQVSEDAEAEIRVVQDWEATGLTFN-------LGIAT 1152
Query: 3301 GTLWTPEXXXXXXXXXXXXPGND--TLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGD 3474
T+ P P + T+ G G D + + GG G+
Sbjct: 1153 LTIENPGGGSVDLSASNVPPNTNGYTVIGNIGDD---------EIIGSRDDDSIFGGRGE 1203
Query: 3475 DVLKVSYWSADNVLSGGTGDDTLYGSAFADTYL------------FNQGDGHDTIIEQGG 3618
D ++ D+++ G DD + G + L + G G+D I G
Sbjct: 1204 D--SIAGLGGDDIIEGNDDDDFISGDSLLLPLLPLEEILPFGNDDIDAGSGNDVI---AG 1258
Query: 3619 TDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDW-LTSNGTRNHSADIEQ-IVF 3792
+V G+ I D+ L G+D + + G G D I + DW + + G + +A +E+ +
Sbjct: 1259 DLLVVTGDDI---DLNLFNGGKDTI-EAGLGSD-ITVGDWSIGAFGDIDLNASLERTAIG 1313
Query: 3793 ADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGD 3972
D T+ T + ++ L G D+ + + G GD
Sbjct: 1314 GDDTITTKQGDNGIVFPIGQVAIDNFLVG----DLAAAVDGVGNDIFLTETLTVIG--GD 1367
Query: 3973 DVLKVSYWSAD--NVLIGGTGDDTLYGSAFADTYL----FNKGD--------GHDTIIEQ 4110
D + AD +V++G G L+G F D+ + F G G D+I +
Sbjct: 1368 DTMT----GADGLDVIVGDVG---LFGFEFNDSEINLTNFKLGQVNGSTVSAGDDSITGE 1420
Query: 4111 GGTDKLV--------FGEGILAADVRLLREGQDVVLDLGNGHDSIR---LKDWLTSNG-- 4251
GG D LV GI+ + + G+D G DSI D+L +
Sbjct: 1421 GGNDILVGDLFVGVINNNGIIIDGGKGFQLGKDGTTSFIGGDDSISGGDGNDFLAGDFVL 1480
Query: 4252 TRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXX 4431
SA + + D T P TL+G
Sbjct: 1481 VDQLSAPFDPLDPNDWTFVNPYA---------------TLQGQAGDSKAQAAQAAINLAQ 1525
Query: 4432 XXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADT 4563
R GG D+ L GG G+DT YG ADT
Sbjct: 1526 LRLEFRAVGG-------------DDELVGGRGNDTFYGGLGADT 1556
Score = 45.7 bits (106), Expect = 0.003
Identities = 104/420 (24%), Positives = 158/420 (36%), Gaps = 38/420 (9%)
Frame = +1
Query: 2947 SNRLEGGAGNDVL-------KVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTI 3105
++ + GG GNDV+ + ++ G GDD + + FN G G DT+
Sbjct: 990 AHTVRGGEGNDVILFGPIAGEPGNGDGQHLAFGDEGDDFIEMTGIGSVE-FNGGAGDDTL 1048
Query: 3106 IEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIR--LKDWLTSNGTRN--HSA 3273
+ G L FG IL D EG D + G G+D+++ D + S G +
Sbjct: 1049 VGGDGDPILGFGNDILNGD-----EGNDFLFG-GKGNDNLQGGEGDDIMSGGEGDDFFFV 1102
Query: 3274 DIEQIVFADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNR 3453
D V D E ++ W+ +
Sbjct: 1103 DAGFDVIEDLGDANSETGDQFQVSEDAEAEIRVVQDWEATGLTFNLGIATLTIEN----- 1157
Query: 3454 LEGGAGDDVLKVSYWSADNV--------LSGGTGDDTLYGSAFADTYLFNQGD------G 3591
GG D+ SA NV + G GDD + GS D+ +G+ G
Sbjct: 1158 -PGGGSVDL------SASNVPPNTNGYTVIGNIGDDEIIGSRDDDSIFGGRGEDSIAGLG 1210
Query: 3592 HDTIIEQGGTDKLVFGEGILAADV---RLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRN 3762
D IIE D + G+ +L + +L G D + D G+G+D I D L G
Sbjct: 1211 GDDIIEGNDDDDFISGDSLLLPLLPLEEILPFGNDDI-DAGSGNDVI-AGDLLVVTGD-- 1266
Query: 3763 HSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXX 3942
DI+ +F G DT++ G DI
Sbjct: 1267 ---DIDLNLFNGG--------------------KDTIEAGLGSDITVGDWSIGAFGDIDL 1303
Query: 3943 SNRLEGGA--GDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQ-- 4110
+ LE A GDD + DN ++ G + D G G+D + +
Sbjct: 1304 NASLERTAIGGDDTITTK--QGDNGIVFPIGQVAIDNFLVGDLAAAVDGVGNDIFLTETL 1361
Query: 4111 ---GGTDKLVFGEG--ILAADVRLLR-EGQDVVLDLGN 4206
GG D + +G ++ DV L E D ++L N
Sbjct: 1362 TVIGGDDTMTGADGLDVIVGDVGLFGFEFNDSEINLTN 1399
Score = 41.0 bits (94), Expect = 0.086
Identities = 87/362 (24%), Positives = 147/362 (40%), Gaps = 43/362 (11%)
Frame = +1
Query: 3139 GEGILAADVRLL---REGQDVVLDLGNGHDSIRL-KDWLTSNGTRNHSADIEQIV----F 3294
G + D++ R G D+ G+G+D I + +D T S D++ ++
Sbjct: 709 GREVFTGDLKAFFDDRPGGDITFLSGSGNDEISIARDAFTL------SEDLKDVISKGHI 762
Query: 3295 ADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLE----- 3459
DG E G+ T+ G +G D N +
Sbjct: 763 LDGGAGNDELTITGDAFSDTDAGH-TVIGGEGNDSILLTGVAEGPIAGHVVNSFDLINEV 821
Query: 3460 GGAGDDVLKVSYW----SADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3627
GGAGDD + +S SA +V+ GG G+D ++ D L G+G ++ G
Sbjct: 822 GGAGDDDINISGDAIGDSAGHVVFGGAGEDDIFIGF--DKTLAVSGNGAALGVDLAG--H 877
Query: 3628 LVFGEGILAADVRLLRE--------GQDVVLDLGNGHDSIRLK-DWLTSNGTR------- 3759
+VF G VR+ + G ++ G G D I + D LT++
Sbjct: 878 VVFA-GDDDDTVRITGDSFTSDSANGSGHSVEGGTGDDLIEISGDALTADPDSETIANPF 936
Query: 3760 ---NHSADIEQIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXX 3930
+ +D++ + AD + T E + + +
Sbjct: 937 FDDSEPSDLDLFIAADQPIPTTEEQYQVLLAQLGLPADYNPRNF-----------IRGVA 985
Query: 3931 XXXXSNRLEGGAGDDVL-------KVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDG 4089
++ + GG G+DV+ + ++ G GDD + + FN G G
Sbjct: 986 AISGAHTVRGGEGNDVILFGPIAGEPGNGDGQHLAFGDEGDDFIEMTGIGSVE-FNGGAG 1044
Query: 4090 HDTIIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIR 4224
DT++ G L FG IL D EG D + G G+D+++
Sbjct: 1045 DDTLVGGDGDPILGFGNDILNGD-----EGNDFLFG-GKGNDNLQ 1083
Score = 36.4 bits (82), Expect = 2.2
Identities = 56/198 (28%), Positives = 81/198 (40%), Gaps = 15/198 (7%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLV 3135
+E G G+D+ V WS IG GD L S G DTI + G + +V
Sbjct: 1280 IEAGLGSDIT-VGDWS-----IGAFGDIDLNASLERTAI-----GGDDTITTKQGDNGIV 1328
Query: 3136 FGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG---TRNHSADIEQIV----- 3291
F G +A D L+ + V +GN I L + LT G T + ++ IV
Sbjct: 1329 FPIGQVAIDNFLVGDLAAAVDGVGN---DIFLTETLTVIGGDDTMTGADGLDVIVGDVGL 1385
Query: 3292 ----FADGTLWTPEXXXXXXXXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLE 3459
F D + G+D++ G G DI ++
Sbjct: 1386 FGFEFNDSEINLTNFKLGQVNGSTVSAGDDSITGEGGNDILVGDLFVGVINNNGII--ID 1443
Query: 3460 GGAGDDVLK---VSYWSADNVLSGGTGDDTLYG 3549
GG G + K S+ D+ +SGG G+D L G
Sbjct: 1444 GGKGFQLGKDGTTSFIGGDDSISGGDGNDFLAG 1476
>gi|829594 (U25950) pro [Proteus mirabilis]
Length = 495
Score = 45.3 bits (105), Expect = 0.004
Identities = 33/90 (36%), Positives = 46/90 (50%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GG GND++ + ADN LIGG GDD +YG + +T G G DT+ G++ ++
Sbjct: 347 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 402
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
E AD L D ++D G D I L
Sbjct: 403 E---IAD--SLVTAADKIMDFKTGIDKIDL 427
Score = 43.4 bits (100), Expect = 0.017
Identities = 32/90 (35%), Positives = 46/90 (50%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GG G+D++ + ADN LIGG GDD +YG + +T G G DT+ G++ ++
Sbjct: 347 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 402
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRL 4227
E AD L D ++D G D I L
Sbjct: 403 E---IAD--SLVTAADKIMDFKTGIDKIDL 427
Score = 41.0 bits (94), Expect = 0.086
Identities = 31/90 (34%), Positives = 45/90 (49%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GG G+D++ + ADN L GG GDD +YG + +T G G DT+ G++ ++
Sbjct: 347 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 402
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
E AD L D ++D G D I L
Sbjct: 403 E---IAD--SLVTAADKIMDFKTGIDKIDL 427
Score = 37.9 bits (86), Expect = 0.75
Identities = 24/59 (40%), Positives = 32/59 (53%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF 4632
GG G+D++ + ADN L GG GDD +YG + +T G G DT+ GGT F
Sbjct: 347 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTL--HGGTGSNTF 399
Score = 37.9 bits (86), Expect = 0.75
Identities = 17/45 (37%), Positives = 28/45 (61%)
Frame = +1
Query: 3448 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQ 3582
N L GG GDD++ S +N + GG G DTL+G ++T+++ +
Sbjct: 361 NTLIGGEGDDIIYGH--SGNNTIYGGRGQDTLHGGTGSNTFIYKE 403
Score = 37.5 bits (85), Expect = 0.98
Identities = 17/45 (37%), Positives = 28/45 (61%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNK 4578
N L GG GDD++ S +N + GG G DTL+G ++T+++ +
Sbjct: 361 NTLIGGEGDDIIYGH--SGNNTIYGGRGQDTLHGGTGSNTFIYKE 403
>gi|1731424|sp|Q11137|ZAPA_PROMI EXTRACELLULAR METALLOPROTEASE
PRECURSOR
Length = 491
Score = 45.3 bits (105), Expect = 0.004
Identities = 33/90 (36%), Positives = 46/90 (50%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GG GND++ + ADN LIGG GDD +YG + +T G G DT+ G++ ++
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 398
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
E AD L D ++D G D I L
Sbjct: 399 E---IAD--SLVTAADKIMDFKTGIDKIDL 423
Score = 43.4 bits (100), Expect = 0.017
Identities = 32/90 (35%), Positives = 46/90 (50%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GG G+D++ + ADN LIGG GDD +YG + +T G G DT+ G++ ++
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 398
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRL 4227
E AD L D ++D G D I L
Sbjct: 399 E---IAD--SLVTAADKIMDFKTGIDKIDL 423
Score = 41.0 bits (94), Expect = 0.086
Identities = 31/90 (34%), Positives = 45/90 (49%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GG G+D++ + ADN L GG GDD +YG + +T G G DT+ G++ ++
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 398
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
E AD L D ++D G D I L
Sbjct: 399 E---IAD--SLVTAADKIMDFKTGIDKIDL 423
Score = 37.9 bits (86), Expect = 0.75
Identities = 24/59 (40%), Positives = 32/59 (53%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF 4632
GG G+D++ + ADN L GG GDD +YG + +T G G DT+ GGT F
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTL--HGGTGSNTF 395
Score = 37.9 bits (86), Expect = 0.75
Identities = 17/45 (37%), Positives = 28/45 (61%)
Frame = +1
Query: 3448 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQ 3582
N L GG GDD++ S +N + GG G DTL+G ++T+++ +
Sbjct: 357 NTLIGGEGDDIIYGH--SGNNTIYGGRGQDTLHGGTGSNTFIYKE 399
Score = 37.5 bits (85), Expect = 0.98
Identities = 17/45 (37%), Positives = 28/45 (61%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNK 4578
N L GG GDD++ S +N + GG G DTL+G ++T+++ +
Sbjct: 357 NTLIGGEGDDIIYGH--SGNNTIYGGRGQDTLHGGTGSNTFIYKE 399
>gi|3493596|gb|AAC33449.1| (AF064762) ZapA [Proteus mirabilis]
Length = 491
Score = 45.3 bits (105), Expect = 0.004
Identities = 33/90 (36%), Positives = 46/90 (50%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GG GND++ + ADN LIGG GDD +YG + +T G G DT+ G++ ++
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 398
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
E AD L D ++D G D I L
Sbjct: 399 E---IAD--SLVTAADKIMDFKTGIDKIDL 423
Score = 43.4 bits (100), Expect = 0.017
Identities = 32/90 (35%), Positives = 46/90 (50%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GG G+D++ + ADN LIGG GDD +YG + +T G G DT+ G++ ++
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 398
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRL 4227
E AD L D ++D G D I L
Sbjct: 399 E---IAD--SLVTAADKIMDFKTGIDKIDL 423
Score = 41.0 bits (94), Expect = 0.086
Identities = 31/90 (34%), Positives = 45/90 (49%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GG G+D++ + ADN L GG GDD +YG + +T G G DT+ G++ ++
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTLHGGTGSNTFIYK 398
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
E AD L D ++D G D I L
Sbjct: 399 E---IAD--SLVTAADKIMDFKTGIDKIDL 423
Score = 37.9 bits (86), Expect = 0.75
Identities = 24/59 (40%), Positives = 32/59 (53%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF 4632
GG G+D++ + ADN L GG GDD +YG + +T G G DT+ GGT F
Sbjct: 343 GGFGNDIIHGN--DADNTLIGGEGDDIIYGHSGNNT--IYGGRGQDTL--HGGTGSNTF 395
Score = 37.9 bits (86), Expect = 0.75
Identities = 17/45 (37%), Positives = 28/45 (61%)
Frame = +1
Query: 3448 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQ 3582
N L GG GDD++ S +N + GG G DTL+G ++T+++ +
Sbjct: 357 NTLIGGEGDDIIYGH--SGNNTIYGGRGQDTLHGGTGSNTFIYKE 399
Score = 37.5 bits (85), Expect = 0.98
Identities = 17/45 (37%), Positives = 28/45 (61%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNK 4578
N L GG GDD++ S +N + GG G DTL+G ++T+++ +
Sbjct: 357 NTLIGGEGDDIIYGH--SGNNTIYGGRGQDTLHGGTGSNTFIYKE 399
>gi|131089|sp|P19144|PRTX_ERWCH SECRETED PROTEASE C PRECURSOR (PROC)
>gi|95587|pir||A36137 metalloproteinase (EC 3.4.24.-) -
Erwinia chrysanthemi >gi|148490 (M37390) metalloprotease
C [Erwinia chrysanthemi]
Length = 478
Score = 44.5 bits (103), Expect = 0.008
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV-- 4629
GG+G+D+L + +ADN L GG GDD L+G + AD G G DT + +D V
Sbjct: 344 GGSGNDLLIGN--NADNTLRGGAGDDVLFGGSGADR--LYGGSGRDTFVYTAASDSKVAA 399
Query: 4630 ------FGAGLSRKEARFTRSGDDLSLL--FNGSEDQV 4719
F G + + +G++L + F+GS ++
Sbjct: 400 PDWLLDFQTGADKIDLSALNTGNNLHFVNQFSGSGGEI 437
Score = 44.5 bits (103), Expect = 0.008
Identities = 33/97 (34%), Positives = 43/97 (44%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GG+G+D+L + +ADN L GG GDD L+G + AD G G DT + +D V
Sbjct: 344 GGSGNDLLIGN--NADNTLRGGAGDDVLFGGSGADR--LYGGSGRDTFVYTAASDSKV-- 397
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 3750
D +LD G D I L T N
Sbjct: 398 ------------AAPDWLLDFQTGADKIDLSALNTGN 422
Score = 43.8 bits (101), Expect = 0.013
Identities = 33/97 (34%), Positives = 43/97 (44%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GG+G+D+L + +ADN L GG GDD L+G + AD G G DT + +D V
Sbjct: 344 GGSGNDLLIGN--NADNTLRGGAGDDVLFGGSGADR--LYGGSGRDTFVYTAASDSKV-- 397
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSN 4248
D +LD G D I L T N
Sbjct: 398 ------------AAPDWLLDFQTGADKIDLSALNTGN 422
Score = 37.9 bits (86), Expect = 0.75
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Frame = +1
Query: 4444 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLF-----NKGDGHDTIIE- 4605
N L GGAGDD VL GG+G D LYG + DT+++ +K D +++
Sbjct: 358 NTLRGGAGDD-----------VLFGGSGADRLYGGSGRDTFVYTAASDSKVAAPDWLLDF 406
Query: 4606 QGGTDKLVFGAGLSRKEA----RFTRSGDDLSLLFNGS 4707
Q G DK+ A + +F+ SG ++ L ++ S
Sbjct: 407 QTGADKIDLSALNTGNNLHFVNQFSGSGGEIMLNWDAS 444
Score = 37.9 bits (86), Expect = 0.75
Identities = 25/61 (40%), Positives = 35/61 (56%), Gaps = 6/61 (9%)
Frame = +1
Query: 3946 NRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF-----NKGDGHDTIIE- 4107
N L GGAGDDVL GG+G D LYG + DT+++ +K D +++
Sbjct: 358 NTLRGGAGDDVL-----------FGGSGADRLYGGSGRDTFVYTAASDSKVAAPDWLLDF 406
Query: 4108 QGGTDKL 4128
Q G DK+
Sbjct: 407 QTGADKI 413
Score = 36.7 bits (83), Expect = 1.7
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Frame = +1
Query: 2962 GGAGNDVL-------KVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGD-----GHDTI 3105
GG+GND+L + + D+VL GG+G D LYG + DT+++ D +
Sbjct: 344 GGSGNDLLIGNNADNTLRGGAGDDVLFGGSGADRLYGGSGRDTFVYTAASDSKVAAPDWL 403
Query: 3106 IE-QGGTDKL 3132
++ Q G DK+
Sbjct: 404 LDFQTGADKI 413
Score = 36.4 bits (82), Expect = 2.2
Identities = 24/61 (39%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Frame = +1
Query: 3448 NRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGD-----GHDTIIE- 3609
N L GGAGDD VL GG+G D LYG + DT+++ D +++
Sbjct: 358 NTLRGGAGDD-----------VLFGGSGADRLYGGSGRDTFVYTAASDSKVAAPDWLLDF 406
Query: 3610 QGGTDKL 3630
Q G DK+
Sbjct: 407 QTGADKI 413
>gi|5733435|gb|AAD49575.1|AF141295_1 (AF141295) metalloprotease
[Erwinia carotovora subsp. carotovora]
Length = 473
Score = 44.5 bits (103), Expect = 0.008
Identities = 34/101 (33%), Positives = 51/101 (49%), Gaps = 9/101 (8%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTII--------EQG 3117
GG+GND++ + A+N+L GG G+D +YG AD + G G D + +
Sbjct: 339 GGSGNDIIIGN--DANNILQGGAGNDVIYGGGGAD--ILTGGAGKDIFVYASASDSSYKS 394
Query: 3118 GTDKLVFGEGILAADVRLLREGQDV-VLDLGNGHDSIRLKDWLTSNGTRN 3264
G D F GI D+ L +D+ +D G + L DW + T N
Sbjct: 395 GYDITDFQRGIDKIDLSALNPNKDLHFVDALTGLGNEVLLDWDAGSNTTN 444
Score = 43.8 bits (101), Expect = 0.013
Identities = 33/101 (32%), Positives = 51/101 (49%), Gaps = 9/101 (8%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTII--------EQG 3615
GG+G+D++ + A+N+L GG G+D +YG AD + G G D + +
Sbjct: 339 GGSGNDIIIGN--DANNILQGGAGNDVIYGGGGAD--ILTGGAGKDIFVYASASDSSYKS 394
Query: 3616 GTDKLVFGEGILAADVRLLREGQDV-VLDLGNGHDSIRLKDWLTSNGTRN 3762
G D F GI D+ L +D+ +D G + L DW + T N
Sbjct: 395 GYDITDFQRGIDKIDLSALNPNKDLHFVDALTGLGNEVLLDWDAGSNTTN 444
Score = 42.6 bits (98), Expect = 0.029
Identities = 33/101 (32%), Positives = 51/101 (49%), Gaps = 9/101 (8%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTII--------EQG 4113
GG+G+D++ + A+N+L GG G+D +YG AD + G G D + +
Sbjct: 339 GGSGNDIIIGN--DANNILQGGAGNDVIYGGGGAD--ILTGGAGKDIFVYASASDSSYKS 394
Query: 4114 GTDKLVFGEGILAADVRLLREGQDV-VLDLGNGHDSIRLKDWLTSNGTRN 4260
G D F GI D+ L +D+ +D G + L DW + T N
Sbjct: 395 GYDITDFQRGIDKIDLSALNPNKDLHFVDALTGLGNEVLLDWDAGSNTTN 444
Score = 39.5 bits (90), Expect = 0.25
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKG---------------DGH 4590
GG+G+D++ + A+N+L GG G+D +YG AD G G+
Sbjct: 339 GGSGNDIIIGN--DANNILQGGAGNDVIYGGGGADILTGGAGKDIFVYASASDSSYKSGY 396
Query: 4591 DTIIEQGGTDKLVFGAGLSRKEARF----TRSGDDLSLLFNGSEDQVTVAGWFNGSGHQV 4758
D Q G DK+ A K+ F T G+++ L ++ + + W N +G
Sbjct: 397 DITDFQRGIDKIDLSALNPNKDLHFVDALTGLGNEVLLDWDAGSNTTNL--WLNFAGQTT 454
Query: 4759 ESLV 4770
V
Sbjct: 455 PDFV 458
>gi|151340 (M74125) lipase [Pseudomonas sp.]
Length = 474
Score = 44.1 bits (102), Expect = 0.010
Identities = 35/101 (34%), Positives = 52/101 (50%), Gaps = 4/101 (3%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF- 4632
G AG+D+++ + + G G+DT+ S+ +T+LF+ G D II TDKLVF
Sbjct: 373 GSAGNDLIQGG--KGADFIEAGKGNDTIRDSSGHNTFLFSGQFGQDRIIGYQPTDKLVFT 430
Query: 4633 ---GAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQV 4758
+G R A+ G D + F G D VT+ G SG +
Sbjct: 431 DVQSSGDYRDHAKVV--GGDTVISFGG--DSVTLVGVVGLSGEGI 471
Score = 42.6 bits (98), Expect = 0.029
Identities = 32/90 (35%), Positives = 48/90 (52%), Gaps = 2/90 (2%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
G AGND+++ + + G G+DT+ S+ +T+LF+ G D II TDKLVF
Sbjct: 373 GSAGNDLIQGG--KGADFIEAGKGNDTIRDSSGHNTFLFSGQFGQDRIIGYQPTDKLVFT 430
Query: 3142 EGILAADVRLLRE--GQDVVLDLGNGHDSIRL 3231
+ + D R + G D V+ G DS+ L
Sbjct: 431 DVQSSGDYRDHAKVVGGDTVISFGG--DSVTL 460
Score = 41.8 bits (96), Expect = 0.050
Identities = 31/90 (34%), Positives = 48/90 (52%), Gaps = 2/90 (2%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
G AG+D+++ + + G G+DT+ S+ +T+LF+ G D II TDKLVF
Sbjct: 373 GSAGNDLIQGG--KGADFIEAGKGNDTIRDSSGHNTFLFSGQFGQDRIIGYQPTDKLVFT 430
Query: 3640 EGILAADVRLLRE--GQDVVLDLGNGHDSIRL 3729
+ + D R + G D V+ G DS+ L
Sbjct: 431 DVQSSGDYRDHAKVVGGDTVISFGG--DSVTL 460
Score = 40.6 bits (93), Expect = 0.11
Identities = 31/90 (34%), Positives = 48/90 (52%), Gaps = 2/90 (2%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
G AG+D+++ + + G G+DT+ S+ +T+LF+ G D II TDKLVF
Sbjct: 373 GSAGNDLIQGG--KGADFIEAGKGNDTIRDSSGHNTFLFSGQFGQDRIIGYQPTDKLVFT 430
Query: 4138 EGILAADVRLLRE--GQDVVLDLGNGHDSIRL 4227
+ + D R + G D V+ G DS+ L
Sbjct: 431 DVQSSGDYRDHAKVVGGDTVISFGG--DSVTL 460
>gi|2114317|dbj|BAA20035| (D88685) tegument protein [Equine
herpesvirus 1]
Length = 503
Score = 44.1 bits (102), Expect = 0.010
Identities = 49/219 (22%), Positives = 84/219 (37%)
Frame = -2
Query: 1190 TLSRKAPM*WLPKNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYA 1011
T S K P PK TPAA A A P++ ++ A ++A P P + A
Sbjct: 132 TQSTKEP----PKPAVETPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSA 187
Query: 1010 LVQSCTICRLPSILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVV 831
+ + + P A A ++ A A+ ++SAA P+ ++A+A AAA +
Sbjct: 188 AAPAAAPAK-SAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPA------- 239
Query: 830 R*YLSLMSCTRRAPSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPG 651
++ A AP A+ P+K +A +K T
Sbjct: 240 --------------------KSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKDQTKSA 279
Query: 650 NSMMEPSALMATFK*PERCSDCAEIAWKDPATPKRRKSA 534
+ +P+ A + ++ D A+ KD A + + A
Sbjct: 280 AEVPKPAKDQAKDQAKDQAKDQAKDQAKDQAKDQAKDQA 318
>gi|6013395|gb|AAF01331.1| (AF188366) polyurethanase esterase B
[Pseudomonas chlororaphis]
Length = 567
Score = 44.1 bits (102), Expect = 0.010
Identities = 64/251 (25%), Positives = 104/251 (40%), Gaps = 19/251 (7%)
Frame = +1
Query: 3502 ADNVLSGGTGDDTLYGSAFADTY-------LFNQGDGHDTI-IEQGGTDKLVFGEGILAA 3657
++++L GG G+D L G A D + + + G GH+ + ++Q + + +G
Sbjct: 322 SNDLLHGGKGNDYLDGGAGDDRFRDDGGYNIIHGGQGHNVLELQQPLKNFSIANDGDGTL 381
Query: 3658 DVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADG----TLWTPEXX 3825
+R G + D+G L T + + D+ V ADG WT
Sbjct: 382 YIRDAYGGISMTRDVG------ALVSHETGSWWQLFGKDVSHSVTADGLQNGNQWT---- 431
Query: 3826 XXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSAD 4005
N +L G + L G GDD+L A+
Sbjct: 432 ----------AYNHSLNG---------DAYGNALVASVDGDWLFGHGGDDLLSSD--KAN 470
Query: 4006 NVLIGGTGDDTLYGSAFA-DTYLFNKGDGHDTIIEQGGTDKLVFGEGILAADV------R 4164
+GGTG+D ++ S +T+LF+ G D I TDKLVF G+ D
Sbjct: 471 VTFVGGTGNDVMHSSGGGGNTFLFSGNFGFDLIHGYQNTDKLVF-MGVPGVDAHYDYSQH 529
Query: 4165 LLREGQDVVLDLGNGHDSIRLKDWLTSNGT 4254
L + G D ++ + + +R+ W S T
Sbjct: 530 LSQNGNDTLVQVFG--EFLRVNPWWGSAWT 557
Score = 42.6 bits (98), Expect = 0.029
Identities = 68/246 (27%), Positives = 99/246 (39%), Gaps = 10/246 (4%)
Frame = +1
Query: 4000 ADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQG-GTDKLVFGEGILAADVRLLRE 4176
++++L GG G+D L G A D + + DG II G G + L + + + +
Sbjct: 322 SNDLLHGGKGNDYLDGGAGDDRF---RDDGGYNIIHGGQGHNVLELQQPLKNFSIANDGD 378
Query: 4177 GQDVVLDLGNGHDSIRLKDWLTSNGTRN----HSADIEQIVFADG----TLWTPEXXXXX 4332
G + D G R L S+ T + D+ V ADG WT
Sbjct: 379 GTLYIRDAYGGISMTRDVGALVSHETGSWWQLFGKDVSHSVTADGLQNGNQWTAY----- 433
Query: 4333 XXXXXXXPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVL 4512
N +L G + L G GDD+L A+
Sbjct: 434 ---------NHSLNG---------DAYGNALVASVDGDWLFGHGGDDLLSSD--KANVTF 473
Query: 4513 SGGTGDDTLYGSAFA-DTYLFNKGDGHDTIIEQGGTDKLVFGAGLSRKEARFTRSGDDLS 4689
GGTG+D ++ S +T+LF+ G D I TDKLVF G+ +A + S
Sbjct: 474 VGGTGNDVMHSSGGGGNTFLFSGNFGFDLIHGYQNTDKLVF-MGVPGVDAHYDYS---QH 529
Query: 4690 LLFNGSEDQVTVAGWF 4737
L NG++ V V G F
Sbjct: 530 LSQNGNDTLVQVFGEF 545
Score = 41.4 bits (95), Expect = 0.066
Identities = 62/251 (24%), Positives = 102/251 (39%), Gaps = 15/251 (5%)
Frame = +1
Query: 3004 ADNVLIGGTGDDTLYGSAFADTY-------LFNQGDGHDTI-IEQGGTDKLVFGEGILAA 3159
++++L GG G+D L G A D + + + G GH+ + ++Q + + +G
Sbjct: 322 SNDLLHGGKGNDYLDGGAGDDRFRDDGGYNIIHGGQGHNVLELQQPLKNFSIANDGDGTL 381
Query: 3160 DVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXX 3339
+R G + D+G L T + + D+ V ADG +
Sbjct: 382 YIRDAYGGISMTRDVG------ALVSHETGSWWQLFGKDVSHSVTADGLQNGNQWTAYNH 435
Query: 3340 XXXXXXPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLS 3519
GN + G + L G GDD+L A+
Sbjct: 436 SLNGDAYGNALVASVDG-------------------DWLFGHGGDDLLSSD--KANVTFV 474
Query: 3520 GGTGDDTLYGSAFA-DTYLFNQGDGHDTIIEQGGTDKLVFGEGILAADV------RLLRE 3678
GGTG+D ++ S +T+LF+ G D I TDKLVF G+ D L +
Sbjct: 475 GGTGNDVMHSSGGGGNTFLFSGNFGFDLIHGYQNTDKLVF-MGVPGVDAHYDYSQHLSQN 533
Query: 3679 GQDVVLDLGNGHDSIRLKDWLTSNGT 3756
G D ++ + + +R+ W S T
Sbjct: 534 GNDTLVQVFG--EFLRVNPWWGSAWT 557
Score = 39.1 bits (89), Expect = 0.33
Identities = 33/101 (32%), Positives = 51/101 (49%), Gaps = 7/101 (6%)
Frame = +1
Query: 2956 LEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFA-DTYLFNQGDGHDTIIEQGGTDKL 3132
L G G+D+L A+ +GGTG+D ++ S +T+LF+ G D I TDKL
Sbjct: 455 LFGHGGDDLLSSD--KANVTFVGGTGNDVMHSSGGGGNTFLFSGNFGFDLIHGYQNTDKL 512
Query: 3133 VFGEGILAADV------RLLREGQDVVLDLGNGHDSIRLKDWLTSNGT 3258
VF G+ D L + G D ++ + + +R+ W S T
Sbjct: 513 VF-MGVPGVDAHYDYSQHLSQNGNDTLVQVFG--EFLRVNPWWGSAWT 557
>gi|283045|pir||S28264 hydroxyproline-rich glycoprotein - maize
>gi|22333|emb|CAA44844| (X63134) hydroxyproline-rich
glycoprotein [Zea mays] >gi|228936|prf||1814452A Hyp-rich
glycoprotein [Zea mays]
Length = 303
Score = 43.8 bits (101), Expect = 0.013
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNH---------PSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAP 935
P+ P + +P PP H P P H P P+ TP + P
Sbjct: 47 PEKPPTKGPKPDKPPKEHKPPKEHGPKPEKPPKEHKPTPPTYTPSPK----PTPPTY-TP 101
Query: 934 SPPATADRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCI 755
+PP T P PAP H+ P+ TP P T + P P PP PS +
Sbjct: 102 TPPPTPKPTPPTYTPAPTPHKPTPKPTPTPPTYTPSPK---PPTPKPTPPTYTPSPKPPA 158
Query: 754 GPGRRNLPHPP 722
P PP
Sbjct: 159 TKPPTPKPTPP 169
Score = 36.4 bits (82), Expect = 2.2
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 1/108 (0%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQ 908
P P T A P P+ P T+ +P P P + +P PPAT
Sbjct: 109 PTPPTYTPAPTPHKPTPKPTPTPPTYTPSPKPPTPKPT-----PPTYTPSPKPPATKPPT 163
Query: 907 PHRVCPAPATHQHVPQ-QTPAPTTAWYADTCL*CPAPGARPPGECPSAR 764
P P P T+ P+ TP PT Y + P P PP PS +
Sbjct: 164 PK---PTPPTYTPSPKPPTPKPTPPTYTPSPK-PPTPKPTPPTYTPSPK 208
>gi|4063015 (AF083061) protease PrtA [Pseudomonas fluorescens]
Length = 477
Score = 42.6 bits (98), Expect = 0.029
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GGAG+D++ + +A NV+ GG G+D +YG G G D + G D VFG
Sbjct: 344 GGAGNDLIIGN--NAANVIKGGAGNDIIYG-----------GGGADQLWGGAGNDTFVFG 390
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSG 4749
+ K + D F D++ ++G G+G
Sbjct: 391 SSSDSKPGAADKIFD-----FTSGSDKIDLSGITKGAG 423
Score = 39.1 bits (89), Expect = 0.33
Identities = 30/90 (33%), Positives = 43/90 (47%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GGAGND++ + +A NV+ GG G+D +YG G G D + G D VFG
Sbjct: 344 GGAGNDLIIGN--NAANVIKGGAGNDIIYG-----------GGGADQLWGGAGNDTFVFG 390
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
++D + D + D +G D I L
Sbjct: 391 S---SSDSK--PGAADKIFDFTSGSDKIDL 415
Score = 38.3 bits (87), Expect = 0.57
Identities = 29/90 (32%), Positives = 43/90 (47%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GGAG+D++ + +A NV+ GG G+D +YG G G D + G D VFG
Sbjct: 344 GGAGNDLIIGN--NAANVIKGGAGNDIIYG-----------GGGADQLWGGAGNDTFVFG 390
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
++D + D + D +G D I L
Sbjct: 391 S---SSDSK--PGAADKIFDFTSGSDKIDL 415
Score = 37.1 bits (84), Expect = 1.3
Identities = 29/90 (32%), Positives = 43/90 (47%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GGAG+D++ + +A NV+ GG G+D +YG G G D + G D VFG
Sbjct: 344 GGAGNDLIIGN--NAANVIKGGAGNDIIYG-----------GGGADQLWGGAGNDTFVFG 390
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRL 4227
++D + D + D +G D I L
Sbjct: 391 S---SSDSK--PGAADKIFDFTSGSDKIDL 415
Score = 35.2 bits (79), Expect = 5.0
Identities = 21/62 (33%), Positives = 32/62 (50%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
+N ++GGAGND++ GG G D L+G A DT++F G + + G D
Sbjct: 357 ANVIKGGAGNDII-----------YGGGGADQLWGGAGNDTFVF----GSSSDSKPGAAD 401
Query: 3127 KL 3132
K+
Sbjct: 402 KI 403
>gi|1170792|sp|P41773|LIPB_PSEFL LIPASE PRECURSOR (TRIACYLGLYCEROL
LIPASE) >gi|281558|pir||A43942 lipase - Pseudomonas
fluorescens >gi|151342 (M86350) lipase [Pseudomonas
fluorescens]
Length = 476
Score = 42.6 bits (98), Expect = 0.029
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
G GND+++ + + + GG G+DT+ ++ +T+LF+ G+D +I TDKLVF
Sbjct: 373 GSDGNDLIQGG--NGADFIEGGKGNDTIRDNSGHNTFLFSGHFGNDRVIGYQPTDKLVFK 430
Query: 3142 EGILAADVR----------LLREGQDVVLDLGNGHDSI 3225
+ + D+R +L G D V +G GH +
Sbjct: 431 DVQGSTDLRDHAKVVGADTVLTFGADSVTLVGVGHGGL 468
Score = 41.8 bits (96), Expect = 0.050
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
G G+D+++ + + + GG G+DT+ ++ +T+LF+ G+D +I TDKLVF
Sbjct: 373 GSDGNDLIQGG--NGADFIEGGKGNDTIRDNSGHNTFLFSGHFGNDRVIGYQPTDKLVFK 430
Query: 3640 EGILAADVR----------LLREGQDVVLDLGNGHDSI 3723
+ + D+R +L G D V +G GH +
Sbjct: 431 DVQGSTDLRDHAKVVGADTVLTFGADSVTLVGVGHGGL 468
Score = 41.0 bits (94), Expect = 0.086
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV 4131
++GG G D ++ GG G+DT+ ++ +T+LF+ G+D +I TDKLV
Sbjct: 380 IQGGNGADFIE-----------GGKGNDTIRDNSGHNTFLFSGHFGNDRVIGYQPTDKLV 428
Query: 4132 FGEGILAADVR----------LLREGQDVVLDLGNGHDSI 4221
F + + D+R +L G D V +G GH +
Sbjct: 429 FKDVQGSTDLRDHAKVVGADTVLTFGADSVTLVGVGHGGL 468
Score = 40.2 bits (92), Expect = 0.15
Identities = 32/96 (33%), Positives = 52/96 (53%), Gaps = 4/96 (4%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF- 4632
G G+D+++ + + + GG G+DT+ ++ +T+LF+ G+D +I TDKLVF
Sbjct: 373 GSDGNDLIQGG--NGADFIEGGKGNDTIRDNSGHNTFLFSGHFGNDRVIGYQPTDKLVFK 430
Query: 4633 ---GAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNG 4743
G+ R A+ G D L F D VT+ G +G
Sbjct: 431 DVQGSTDLRDHAKVV--GADTVLTFGA--DSVTLVGVGHG 466
>gi|790691 (L39096) mannuronan C-5-epimerase [Azotobacter vinelandii]
Length = 553
Score = 42.6 bits (98), Expect = 0.029
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4620
++RL+GGAGDD+L GG G D L G A ADT++F+ + + TD
Sbjct: 408 ADRLDGGAGDDIL-----------DGGAGRDRLSGGAGADTFVFSARE------DSYRTD 450
Query: 4621 KLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG-WFNGSG 4749
VF +DL L F SED++ ++ F+G G
Sbjct: 451 TAVF---------------NDLILDFEASEDRIDLSALGFSGLG 479
Score = 40.2 bits (92), Expect = 0.15
Identities = 26/69 (37%), Positives = 36/69 (51%)
Frame = +1
Query: 3445 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3624
++RL+GGAGDD+L GG G D L G A ADT++F+ + + TD
Sbjct: 408 ADRLDGGAGDDIL-----------DGGAGRDRLSGGAGADTFVFSARE------DSYRTD 450
Query: 3625 KLVFGEGIL 3651
VF + IL
Sbjct: 451 TAVFNDLIL 459
Score = 39.9 bits (91), Expect = 0.19
Identities = 26/69 (37%), Positives = 36/69 (51%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4122
++RL+GGAGDD+L GG G D L G A ADT++F+ + + TD
Sbjct: 408 ADRLDGGAGDDILD-----------GGAGRDRLSGGAGADTFVFSARE------DSYRTD 450
Query: 4123 KLVFGEGIL 4149
VF + IL
Sbjct: 451 TAVFNDLIL 459
Score = 38.7 bits (88), Expect = 0.44
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +1
Query: 2950 NRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDK 3129
++L+GG+G D ++ + D++L GG G D L G A ADT++F+ + + TD
Sbjct: 400 DQLQGGSGAD--RLDGGAGDDILDGGAGRDRLSGGAGADTFVFSARE------DSYRTDT 451
Query: 3130 LVFGEGIL 3153
VF + IL
Sbjct: 452 AVFNDLIL 459
>gi|4115623|dbj|BAA36461.1| (AB015053) alkaline protease [Pseudomonas
fluorescens]
Length = 482
Score = 42.6 bits (98), Expect = 0.029
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GG+G+D+L + +A N+L GG G+D +YG G G D + G+D VFG
Sbjct: 349 GGSGNDLLIGN--AAANILKGGAGNDIIYG-----------GGGADQLWGGAGSDTFVFG 395
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSG 4749
+ K + D F D++ + G G+G
Sbjct: 396 SSSDSKPGAADKIFD-----FTSGSDKIDLTGITKGAG 428
Score = 41.0 bits (94), Expect = 0.086
Identities = 57/214 (26%), Positives = 83/214 (38%), Gaps = 22/214 (10%)
Frame = +1
Query: 3487 VSYWSADNV------------LSGGTGDDT-----LYGSAFAD-----TYLFNQGDGHDT 3600
+SYWS N SG DD LYG+ + TY FN G D
Sbjct: 226 MSYWSESNTNQNFSKGGVEAYSSGPLIDDIAAIQKLYGANYNTRAGDTTYGFNSNTGRDF 285
Query: 3601 IIEQGGTDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 3780
+ DKLVF V D G G+D++ S T+N ++
Sbjct: 286 LSATSSADKLVFS-----------------VWD-GGGNDTLDF-----SGFTQNQKINLN 322
Query: 3781 QIVFADGTLWTPEXXXXXXXXXXXXXXNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEG 3960
+ F+D + G G D+ +N L+G
Sbjct: 323 ETSFSD------VGGLVGNVSIAKGVTVENAFGGSGNDLLIGNAA---------ANILKG 367
Query: 3961 GAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKL 4128
GAG+D++ GG G D L+G A +DT++F G + + G DK+
Sbjct: 368 GAGNDII-----------YGGGGADQLWGGAGSDTFVF----GSSSDSKPGAADKI 408
Score = 39.5 bits (90), Expect = 0.25
Identities = 30/90 (33%), Positives = 44/90 (48%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GG+GND+L + +A N+L GG G+D +YG G G D + G+D VFG
Sbjct: 349 GGSGNDLLIGN--AAANILKGGAGNDIIYG-----------GGGADQLWGGAGSDTFVFG 395
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
++D + D + D +G D I L
Sbjct: 396 S---SSDSK--PGAADKIFDFTSGSDKIDL 420
Score = 38.7 bits (88), Expect = 0.44
Identities = 29/90 (32%), Positives = 44/90 (48%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GG+G+D+L + +A N+L GG G+D +YG G G D + G+D VFG
Sbjct: 349 GGSGNDLLIGN--AAANILKGGAGNDIIYG-----------GGGADQLWGGAGSDTFVFG 395
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
++D + D + D +G D I L
Sbjct: 396 S---SSDSK--PGAADKIFDFTSGSDKIDL 420
Score = 37.5 bits (85), Expect = 0.98
Identities = 29/90 (32%), Positives = 44/90 (48%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GG+G+D+L + +A N+L GG G+D +YG G G D + G+D VFG
Sbjct: 349 GGSGNDLLIGN--AAANILKGGAGNDIIYG-----------GGGADQLWGGAGSDTFVFG 395
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRL 4227
++D + D + D +G D I L
Sbjct: 396 S---SSDSK--PGAADKIFDFTSGSDKIDL 420
Score = 37.1 bits (84), Expect = 1.3
Identities = 22/62 (35%), Positives = 33/62 (52%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
+N L+GGAGND++ GG G D L+G A +DT++F G + + G D
Sbjct: 362 ANILKGGAGNDII-----------YGGGGADQLWGGAGSDTFVF----GSSSDSKPGAAD 406
Query: 3127 KL 3132
K+
Sbjct: 407 KI 408
>gi|82698|pir||JQ0985 hydroxyproline-rich glycoprotein precursor -
maize >gi|257041|bbs|115226 (S45164) hydroxyproline-rich
glycoprotein, HRGP [maize, Peptide, 328 aa] [Zea mays]
>gi|4007865|emb|CAA10387| (AJ131535) Hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays]
Length = 328
Score = 42.2 bits (97), Expect = 0.038
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNH---PSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
P+ P + +P PP H P P H P P+ P + P+PP
Sbjct: 49 PEKPPTKGPKPDKPPKEHGPKPEKPPKEHKPTPPTYTPSPKPT---PPTYTPTPTPPKPT 105
Query: 916 DRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSAR 764
P PAP H+ P+ TP P T Y T P P PP PS +
Sbjct: 106 ---PPTYTPAPTPHKPTPKPTPTPPT--YTPTPK-PPTPKPTPPTYTPSPK 150
Score = 34.8 bits (78), Expect = 6.5
Identities = 32/125 (25%), Positives = 40/125 (31%), Gaps = 3/125 (2%)
Frame = -3
Query: 1078 PESTAAQPLWPPPNHPS--SHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQP 905
P + P P P P+ P H P + P Y P + P T +P
Sbjct: 92 PPTYTPTPTPPKPTPPTYTPAPTPHKPTPKPTPTPPTYTPTPKPPTPKPTPPTYTPSPKP 151
Query: 904 HRVCPAPATHQHVPQ-QTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPH 728
P P T+ P+ TP PT Y P +PP P P P
Sbjct: 152 PTPKPTPPTYTPSPKPPTPKPTPPTY--------TPSPKPPATKPPTPKPTPPTYTPSPK 203
Query: 727 PPAAACLP 704
PP P
Sbjct: 204 PPTPKPTP 211
>gi|2983562 (AE000722) hemolysin [Aquifex aeolicus]
Length = 398
Score = 41.8 bits (96), Expect = 0.050
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Frame = +1
Query: 3121 TDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG-------TRNHSADI 3279
T KL G+ + D + E + ++D G+G D+I++ T+ G + N+ ++
Sbjct: 70 TYKLGSGDDTVIVDTNI--EANNDIIDGGDGTDTIKVD---TTGGAVTYAPASDNNLKNV 124
Query: 3280 EQIVFADGTLWTPEXXXXXXXXXXX-XPGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRL 3456
E+IV T GNDT+ G G + ++ L
Sbjct: 125 EKIVATGSNGATINLSNQTEGFEIVGSAGNDTITGGAGNNTIAGGAGNDTIAGGAGNDTL 184
Query: 3457 EGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY 3570
GGAG+D +++GG G DTL G AD +
Sbjct: 185 TGGAGND-----------IITGGKGQDTLTGGNGADVF 211
Score = 39.5 bits (90), Expect = 0.25
Identities = 37/155 (23%), Positives = 58/155 (36%), Gaps = 1/155 (0%)
Frame = +1
Query: 4177 GQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXP 4356
G +V LG+G D++ + + +N D + D T P
Sbjct: 66 GANVTYKLGSGDDTVIVDTNIEANNDIIDGGDGTDTIKVDTT----------GGAVTYAP 115
Query: 4357 GNDT-LKGWQXXXXXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDD 4533
+D LK + + G AG+D ++ + +N ++GG G+D
Sbjct: 116 ASDNNLKNVEKIVATGSNGATINLSNQTEGFEIVGSAGNDT--ITGGAGNNTIAGGAGND 173
Query: 4534 TLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFGAG 4641
T+ G A DT G G+D I G D L G G
Sbjct: 174 TIAGGAGNDT--LTGGAGNDIITGGKGQDTLTGGNG 207
Score = 39.5 bits (90), Expect = 0.25
Identities = 24/62 (38%), Positives = 32/62 (50%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
G AGND ++ + +N + GG G+DT+ G A DT G G+D I G D L G
Sbjct: 150 GSAGNDT--ITGGAGNNTIAGGAGNDTIAGGAGNDT--LTGGAGNDIITGGKGQDTLTGG 205
Query: 3142 EG 3147
G
Sbjct: 206 NG 207
Score = 39.5 bits (90), Expect = 0.25
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Frame = +1
Query: 3181 GQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIEQIVFADGTLWTPEXXXXXXXXXXXXP 3360
G +V LG+G D++ + + +N D + D T P
Sbjct: 66 GANVTYKLGSGDDTVIVDTNIEANNDIIDGGDGTDTIKVDTT----------GGAVTYAP 115
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEG-----GAGDDVLKVSYWSADNVLSGG 3525
+D K++ SN+ EG AG+D ++ + +N ++GG
Sbjct: 116 ASDN----NLKNVEKIVATGSNGATINLSNQTEGFEIVGSAGNDT--ITGGAGNNTIAGG 169
Query: 3526 TGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFGEG 3645
G+DT+ G A DT G G+D I G D L G G
Sbjct: 170 AGNDTIAGGAGNDT--LTGGAGNDIITGGKGQDTLTGGNG 207
Score = 38.7 bits (88), Expect = 0.44
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Frame = +1
Query: 3619 TDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG-------TRNHSADI 3777
T KL G+ + D + E + ++D G+G D+I++ T+ G + N+ ++
Sbjct: 70 TYKLGSGDDTVIVDTNI--EANNDIIDGGDGTDTIKVD---TTGGAVTYAPASDNNLKNV 124
Query: 3778 EQIVFADGTLWTPEXXXXXXXXXXXXXX-NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRL 3954
E+IV T NDT+ G G + ++ L
Sbjct: 125 EKIVATGSNGATINLSNQTEGFEIVGSAGNDTITGGAGNNTIAGGAGNDTIAGGAGNDTL 184
Query: 3955 EGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTY 4068
GGAG+D ++ GG G DTL G AD +
Sbjct: 185 TGGAGND-----------IITGGKGQDTLTGGNGADVF 211
Score = 38.3 bits (87), Expect = 0.57
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Frame = +1
Query: 4117 TDKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNG-------TRNHSADI 4275
T KL G+ + D + E + ++D G+G D+I++ T+ G + N+ ++
Sbjct: 70 TYKLGSGDDTVIVDTNI--EANNDIIDGGDGTDTIKVD---TTGGAVTYAPASDNNLKNV 124
Query: 4276 EQIVFADGTLWTPEXXXXXXXXXXX-XPGNDTLKGWQXXXXXXXXXXXXXXXXXXXSNRL 4452
E+IV T GNDT+ G ++ L
Sbjct: 125 EKIVATGSNGATINLSNQTEGFEIVGSAGNDTITGGAGNNTIAGGAGNDTIAGGAGNDTL 184
Query: 4453 EGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTY 4566
GGAG+D++ +GG G DTL G AD +
Sbjct: 185 TGGAGNDII-----------TGGKGQDTLTGGNGADVF 211
Score = 37.5 bits (85), Expect = 0.98
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
G AG+D ++ + +N + GG G+DT+ G A DT G G+D I G D L G
Sbjct: 150 GSAGNDT--ITGGAGNNTIAGGAGNDTIAGGAGNDT--LTGGAGNDIITGGKGQDTLTGG 205
Query: 4138 EG 4143
G
Sbjct: 206 NG 207
>gi|416833|sp|Q02910|CPN_DROME CALPHOTIN >gi|422433|pir||A47282
calcium-binding protein calphotin - fruit fly (Drosophila
melanogaster) >gi|157032 (L02111) calcium-binding protein
[Drosophila melanogaster]
Length = 865
Score = 41.8 bits (96), Expect = 0.050
Identities = 29/91 (31%), Positives = 41/91 (44%)
Frame = -2
Query: 1160 LPKNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRL 981
+P V + AA V A AAP+ V +P A + P PP A VQ T+ +
Sbjct: 6 IPSPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATV-TI 64
Query: 980 PSILPLAYAALASCAITASDSRSAATPSLPS 888
P+ P+A A++ A A +A TP S
Sbjct: 65 PAPAPIAAASVTPVASVAPPVVAAPTPPAAS 95
>gi|283032|pir||S22456 hydroxyproline-rich glycoprotein - perennial
teosinte >gi|22092|emb|CAA45514| (X64173)
hydroxyproline-rich glycoprotein [Zea diploperennis]
Length = 350
Score = 41.8 bits (96), Expect = 0.050
Identities = 35/122 (28%), Positives = 44/122 (35%), Gaps = 9/122 (7%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNH---------PSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAP 935
P+ P + +P PP H P P H P P+ P + P
Sbjct: 43 PEKPPTKGPKPEKPPKEHKPPKEHGPKPEKPPKEHKPTPPTYTPSPKPT---PPTYTPTP 99
Query: 934 SPPATADRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCI 755
+PP T P PAP H+ P P PT Y + P P PP PS +
Sbjct: 100 TPP-TPKPTPPTYTPAPTPHKPTPTPKPTPTPPTYTPSPK-PPTPKPTPPTYAPSPKPPA 157
Query: 754 GPGRRNLPHPP 722
P PP
Sbjct: 158 TKPPTPKPTPP 168
Score = 36.0 bits (81), Expect = 2.9
Identities = 32/108 (29%), Positives = 38/108 (34%), Gaps = 1/108 (0%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQ 908
P P T PP PS P T P P + +P PPAT
Sbjct: 117 PHKPTPTPKPTPTPPTYTPSPKPPTPKPTP--------------PTYAPSPKPPATKPPT 162
Query: 907 PHRVCPAPATHQHVPQ-QTPAPTTAWYADTCL*CPAPGARPPGECPSAR 764
P P P T+ P+ TP PT Y P+P PP PS +
Sbjct: 163 PK---PTPPTYTPSPKPPTPKPTPPTYT------PSPKPTPPTYTPSPK 202
Score = 34.4 bits (77), Expect = 8.5
Identities = 36/131 (27%), Positives = 45/131 (33%), Gaps = 1/131 (0%)
Frame = -3
Query: 1096 SGHPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
S P P+ T PP PS P P+ P+ P + +P PPAT
Sbjct: 173 SPKPPTPKPT------PPTYTPSPKPTPPTYTPSPKPPTPKPT---PPTYTPSPKPPATK 223
Query: 916 DRQPHRVCPAPATHQHVPQ-QTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRR 740
P P P T+ P+ TP PT Y P +PP P+ P
Sbjct: 224 PPTPK---PTPPTYTPSPKPPTPKPTPPTY--------TPSPKPPATKPTP-----PTYT 267
Query: 739 NLPHPPAAACLP 704
P PP P
Sbjct: 268 PSPKPPTPKPTP 279
>gi|1492050 (U60315) MC107L [Molluscum contagiosum virus subtype 1]
Length = 421
Score = 41.8 bits (96), Expect = 0.050
Identities = 47/175 (26%), Positives = 57/175 (31%), Gaps = 6/175 (3%)
Frame = -3
Query: 1234 TSPLTAPRYGAAGRTPYPEKRRCNGCLRTCLXXXXXXXXXXXXXXQSGHPDIPESTAAQP 1055
T P+ A AA P P G TC P +P +
Sbjct: 102 TCPMPATAPAAAQACPMPGPVSSLGTT-TCPMPESTSACSALATTLPTRPPVPPRPSILS 160
Query: 1054 LWPPPNHPSSHP-----DTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQPHRVCP 890
+ P P +P + + P R +P APSP D CP
Sbjct: 161 IRVPEQLPRRNPLDPTLNMLLAKPPPPVAAARLRFALSPDGEPAPSPARDTD-----TCP 215
Query: 889 APATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECP-SARGCIGPGRRNLPHPPAAA 713
APAT P +P A T CPAP P P +A C P P PA A
Sbjct: 216 APATAPACPAPATSPACPAPA-TAPACPAPATAPACPAPATAPAC--PAPATAPACPAPA 272
Query: 712 C 710
C
Sbjct: 273 C 273
>gi|6119851|gb|AAF04257.1| (AF139114) subtilisin-like serine protease
[Neospora caninum]
Length = 865
Score = 41.4 bits (95), Expect = 0.066
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQ-SAGCPRYCHWRTPHWH-RAPSPPATAD 914
P P A+ P PP+ HP NP + S P +W+ PH H P+PP +
Sbjct: 556 PSHPPPEASPPESSPPDRQHPHPHPPRPNPPEASPPEPSPPNWQHPHPHPPRPNPPEASP 615
Query: 913 RQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNL 734
+ P+P QH P P PGA PP P +
Sbjct: 616 PE-----PSPPNWQHPHPHPPRPN------------PPGASPPESSPP------NWQHPH 652
Query: 733 PHPP 722
PHPP
Sbjct: 653 PHPP 656
Score = 36.7 bits (83), Expect = 1.7
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWH-RAPSPPATAD- 914
P+ PE++ +P P HP HP + P S P +W+ PH H P+PP +
Sbjct: 583 PNPPEASPPEPSPPNWQHPHPHPPRP-NPPEASPPEPSPPNWQHPHPHPPRPNPPGASPP 641
Query: 913 -------RQPHRVCPAPATHQHVPQQTPAP 845
+ PH P P + P Q+ P
Sbjct: 642 ESSPPNWQHPHPHPPRPNPPEASPPQSSPP 671
>gi|4826998|ref|NP_005057.1|| splicing factor proline/glutamine rich
(polypyrimidine tract-binding protein-associated)
>gi|1709851|sp|P23246|PSF_HUMAN PTB-ASSOCIATED SPLICING
FACTOR (PSF) >gi|423054|pir||A46302 PTB-associated
splicing factor, long form - human
>gi|38458|emb|CAA50283| (X70944) PTB-associated splicing
factor [Homo sapiens]
Length = 707
Score = 41.4 bits (95), Expect = 0.066
Identities = 35/122 (28%), Positives = 44/122 (35%), Gaps = 4/122 (3%)
Frame = -3
Query: 1078 PESTAAQPLWPPPNHPSSHPDTHWSN----PAQSAGCPRYCHWRTPHWHRAPSPPATADR 911
P P PPP+ P HP H P Q + P P +PPA++
Sbjct: 72 PPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA 131
Query: 910 QPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLP 731
P + A P TP P A + AP PP PS+ P + P
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTS-------APPGAPPPTPPSSGVPTTPPQAGGP 184
Query: 730 HPPAAA 713
PP AA
Sbjct: 185 PPPPAA 190
>gi|5305316|gb|AAD41583.1|AF057703_1 (AF057703) structural toxin
protein RtxA [Legionella pneumophila]
Length = 1208
Score = 41.4 bits (95), Expect = 0.066
Identities = 37/116 (31%), Positives = 57/116 (48%), Gaps = 12/116 (10%)
Frame = +1
Query: 2953 RLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGD---GHDTIIE---- 3111
+L GG GNDVL + + ++ + GG G+DT+ G DT+ + GD G DTI +
Sbjct: 1058 QLNGGNGNDVLHGT--TGNDFIRGGQGNDTMTGGGGVDTFFWLSGDEDGGVDTITDFKAN 1115
Query: 3112 --QGGTDKLVFGEGILAADVRLLREGQDVVLDLG---NGHDSIRLKDWLTSNGTRNHSAD 3276
+D V L +D L D L++ G +I+ + NG N A
Sbjct: 1116 PVDKSSDASVLNLSDLLSDADLETNSLDNYLNVSTTEEGDTAIK----VDPNGNGNFDAP 1171
Query: 3277 IEQIVFAD 3300
+ I+ D
Sbjct: 1172 AQTIILED 1179
Score = 40.6 bits (93), Expect = 0.11
Identities = 25/76 (32%), Positives = 39/76 (50%)
Frame = +1
Query: 3862 NDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTL 4041
+DT+ G QG D ++ G G+DV+ S ++V++GGTG+DTL
Sbjct: 516 HDTIGGGQGND------------------QIYGQEGNDVIDGG--SGNDVIVGGTGNDTL 555
Query: 4042 YGSAFADTYLFNKGDG 4089
G + AD ++ KG G
Sbjct: 556 TGGSGADQFVLVKGQG 571
Score = 40.2 bits (92), Expect = 0.15
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Frame = +1
Query: 3451 RLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGD---GHDTIIE---- 3609
+L GG G+DVL + + ++ + GG G+DT+ G DT+ + GD G DTI +
Sbjct: 1058 QLNGGNGNDVLHGT--TGNDFIRGGQGNDTMTGGGGVDTFFWLSGDEDGGVDTITDFKAN 1115
Query: 3610 --QGGTDKLVFGEGILAADVRLLREGQDVVLDLG---NGHDSIRLKDWLTSNGTRNHSAD 3774
+D V L +D L D L++ G +I+ + NG N A
Sbjct: 1116 PVDKSSDASVLNLSDLLSDADLETNSLDNYLNVSTTEEGDTAIK----VDPNGNGNFDAP 1171
Query: 3775 IEQIVFAD 3798
+ I+ D
Sbjct: 1172 AQTIILED 1179
Score = 40.2 bits (92), Expect = 0.15
Identities = 19/49 (38%), Positives = 33/49 (66%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDG 3093
++++ G GNDV+ S ++V++GGTG+DTL G + AD ++ +G G
Sbjct: 525 NDQIYGQEGNDVIDGG--SGNDVIVGGTGNDTLTGGSGADQFVLVKGQG 571
Score = 39.5 bits (90), Expect = 0.25
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Frame = +1
Query: 3949 RLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGD---GHDTIIE---- 4107
+L GG G+DVL + + ++ + GG G+DT+ G DT+ + GD G DTI +
Sbjct: 1058 QLNGGNGNDVLHGT--TGNDFIRGGQGNDTMTGGGGVDTFFWLSGDEDGGVDTITDFKAN 1115
Query: 4108 --QGGTDKLVFGEGILAADVRLLREGQDVVLDLG---NGHDSIRLKDWLTSNGTRNHSAD 4272
+D V L +D L D L++ G +I+ + NG N A
Sbjct: 1116 PVDKSSDASVLNLSDLLSDADLETNSLDNYLNVSTTEEGDTAIK----VDPNGNGNFDAP 1171
Query: 4273 IEQIVFAD 4296
+ I+ D
Sbjct: 1172 AQTIILED 1179
Score = 39.5 bits (90), Expect = 0.25
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +1
Query: 3361 GNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDDT 3540
G+DT+ G QG D ++ G G+DV+ S ++V+ GGTG+DT
Sbjct: 515 GHDTIGGGQGND------------------QIYGQEGNDVIDGG--SGNDVIVGGTGNDT 554
Query: 3541 LYGSAFADTYLFNQGDG 3591
L G + AD ++ +G G
Sbjct: 555 LTGGSGADQFVLVKGQG 571
Score = 37.9 bits (86), Expect = 0.75
Identities = 19/49 (38%), Positives = 32/49 (64%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDG 4587
++++ G G+DV+ S ++V+ GGTG+DTL G + AD ++ KG G
Sbjct: 525 NDQIYGQEGNDVIDGG--SGNDVIVGGTGNDTLTGGSGADQFVLVKGQG 571
Score = 37.9 bits (86), Expect = 0.75
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +1
Query: 4447 RLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKL 4626
+L GG G+DVL + + ++ + GG G+DT+ G DT+ + GD E GG D +
Sbjct: 1058 QLNGGNGNDVLHGT--TGNDFIRGGQGNDTMTGGGGVDTFFWLSGD------EDGGVDTI 1109
>gi|100753|pir||S13383 hydroxyproline-rich glycoprotein - sorghum
>gi|228939|prf||1814452D Hyp-rich glycoprotein [Sorghum
bicolor]
Length = 283
Score = 41.4 bits (95), Expect = 0.066
Identities = 31/105 (29%), Positives = 37/105 (34%), Gaps = 1/105 (0%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNH-PSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADR 911
P + P+ PP H PS P T P P+ P + P PPAT
Sbjct: 165 PPVYTPNPKPPVTKPPTHTPSPKPPTSKPTPPVYTPSPKPPKPSPPTYTPTPKPPATKPP 224
Query: 910 QPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECP 773
P P H +P+ TP PT PAP PP P
Sbjct: 225 TSTPTHPKPTPHTPIPKPTP-PTYK---------PAPKPSPPAPTP 260
Score = 37.1 bits (84), Expect = 1.3
Identities = 55/234 (23%), Positives = 72/234 (30%)
Frame = -3
Query: 1078 PESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQPHR 899
P P++PPP +S P T+ +P A P + P PPAT P
Sbjct: 96 PSPKPKSPVYPPPPK-ASTPPTYTPSPKPPA--------TKPPTYPTPKPPATKPPTPPV 146
Query: 898 VCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPPA 719
P+P P TP PT Y P +PP P P P PP
Sbjct: 147 YTPSPKPPVTKP-PTPKPTPPVY--------TPNPKPPVTKP-------PTHTPSPKPPT 190
Query: 718 AACLPSRSAQSIAGCLNVAPHRVIXXXXXXXXXXPLNSQRDALIVLKSPGRTPPPPSAAN 539
+ P S K P +PP +
Sbjct: 191 SKPTPPVYTPS----------------------------------PKPPKPSPPTYTPTP 216
Query: 538 QR*ATHPPR*YWGCSTSAAVRFD*TPHSPRHRRSGCAPHPPCHSQSGRRSCPKP 377
+ AT PP TS TPH+P + P PP + + + S P P
Sbjct: 217 KPPATKPP-------TSTPTHPKPTPHTPIPK-----PTPPTYKPAPKPSPPAP 258
>gi|4826415|emb|CAB42873.1| (Y19002) zinc-binding metalloprotease
[Erwinia amylovora]
Length = 478
Score = 41.4 bits (95), Expect = 0.066
Identities = 30/90 (33%), Positives = 43/90 (47%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GGAGNDV+ + +ADNV+ GG G+D +YG G G D + G D VF
Sbjct: 340 GGAGNDVIVGN--AADNVIKGGAGNDVIYG-----------GGGQDQLWGGSGNDIFVFS 386
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
+ ++ + D + D +G D I L
Sbjct: 387 DLKDSSS-----KSPDQIRDFESGKDKIDL 411
Score = 40.6 bits (93), Expect = 0.11
Identities = 29/90 (32%), Positives = 43/90 (47%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GGAG+DV+ + +ADNV+ GG G+D +YG G G D + G D VF
Sbjct: 340 GGAGNDVIVGN--AADNVIKGGAGNDVIYG-----------GGGQDQLWGGSGNDIFVFS 386
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
+ ++ + D + D +G D I L
Sbjct: 387 DLKDSSS-----KSPDQIRDFESGKDKIDL 411
Score = 39.9 bits (91), Expect = 0.19
Identities = 36/108 (33%), Positives = 51/108 (46%), Gaps = 8/108 (7%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF- 4632
GGAG+DV+ + +ADNV+ GG G+D +YG G G D + G D VF
Sbjct: 340 GGAGNDVIVGN--AADNVIKGGAGNDVIYG-----------GGGQDQLWGGSGNDIFVFS 386
Query: 4633 ----GAGLSRKEARFTRSGD---DLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQD 4779
+ S + R SG DLS G + + + SG E+L+ D
Sbjct: 387 DLKDSSSKSPDQIRDFESGKDKIDLSFFNQGDKGSDFIHFVDHFSGQAGEALLSYD 442
Score = 39.5 bits (90), Expect = 0.25
Identities = 29/90 (32%), Positives = 43/90 (47%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GGAG+DV+ + +ADNV+ GG G+D +YG G G D + G D VF
Sbjct: 340 GGAGNDVIVGN--AADNVIKGGAGNDVIYG-----------GGGQDQLWGGSGNDIFVFS 386
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRL 4227
+ ++ + D + D +G D I L
Sbjct: 387 DLKDSSS-----KSPDQIRDFESGKDKIDL 411
>gi|4115630|dbj|BAA36468.1| (AB015053) extracellular lipase
[Pseudomonas fluorescens]
Length = 476
Score = 41.0 bits (94), Expect = 0.086
Identities = 32/90 (35%), Positives = 48/90 (52%), Gaps = 2/90 (2%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
G GND+++ + + GG G+DT+ ++ +T+LF G D +I TDKLVF
Sbjct: 373 GSDGNDLIQGG--KGVDFIEGGKGNDTIRDNSGHNTFLFGGQFGQDRVIGYQPTDKLVFR 430
Query: 3142 EGILAADVRLLRE--GQDVVLDLGNGHDSIRL 3231
+ +AD R + G D VL G DS+ L
Sbjct: 431 DVEGSADWRDHAKVVGSDTVLSF--GADSVTL 460
Score = 40.2 bits (92), Expect = 0.15
Identities = 32/92 (34%), Positives = 47/92 (50%), Gaps = 2/92 (2%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV 4131
++GG G D ++ GG G+DT+ ++ +T+LF G D +I TDKLV
Sbjct: 380 IQGGKGVDFIE-----------GGKGNDTIRDNSGHNTFLFGGQFGQDRVIGYQPTDKLV 428
Query: 4132 FGEGILAADVRLLRE--GQDVVLDLGNGHDSIRL 4227
F + +AD R + G D VL G DS+ L
Sbjct: 429 FRDVEGSADWRDHAKVVGSDTVLSF--GADSVTL 460
Score = 40.2 bits (92), Expect = 0.15
Identities = 31/90 (34%), Positives = 48/90 (52%), Gaps = 2/90 (2%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
G G+D+++ + + GG G+DT+ ++ +T+LF G D +I TDKLVF
Sbjct: 373 GSDGNDLIQGG--KGVDFIEGGKGNDTIRDNSGHNTFLFGGQFGQDRVIGYQPTDKLVFR 430
Query: 3640 EGILAADVRLLRE--GQDVVLDLGNGHDSIRL 3729
+ +AD R + G D VL G DS+ L
Sbjct: 431 DVEGSADWRDHAKVVGSDTVLSF--GADSVTL 460
Score = 39.1 bits (89), Expect = 0.33
Identities = 31/92 (33%), Positives = 47/92 (50%), Gaps = 4/92 (4%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVF- 4632
G G+D+++ + + GG G+DT+ ++ +T+LF G D +I TDKLVF
Sbjct: 373 GSDGNDLIQGG--KGVDFIEGGKGNDTIRDNSGHNTFLFGGQFGQDRVIGYQPTDKLVFR 430
Query: 4633 ---GAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG 4731
G+ R A+ G D L F D VT+ G
Sbjct: 431 DVEGSADWRDHAKVV--GSDTVLSFGA--DSVTLVG 462
>gi|2429362 (AF020261) proline rich protein [Santalum album]
Length = 326
Score = 41.0 bits (94), Expect = 0.086
Identities = 33/115 (28%), Positives = 45/115 (38%), Gaps = 4/115 (3%)
Frame = -3
Query: 1048 PPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQPHRVCPAPATHQH 869
P P PS P +P+ A P P + +PSPP P V P P
Sbjct: 182 PSPGPPSCSPSP--KSPSPPASSPPRSRPGPPDYTTSPSPPT-----PRSVPPTPPASPS 234
Query: 868 VPQQTPAPTTAWYADTCL*CPAPGARPPGECPS----ARGCIGPGRRNLPHPPAAACLP 704
P P+P + + + P P RPP PS + P R + PP+ A +P
Sbjct: 235 PPTAKPSPPSRGSSPSPPTSPTPTPRPPSYSPSPTPPSSRPSPPLRSPILTPPSPAAVP 293
Score = 40.6 bits (93), Expect = 0.11
Identities = 39/131 (29%), Positives = 48/131 (35%), Gaps = 8/131 (6%)
Frame = -3
Query: 1093 GHPDIPESTAAQPLW---PPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPA 923
G+P+ P S W PP +P S P T + P P R+PSPP
Sbjct: 94 GNPNSPASLIPWRRWDHTPPLFNPPSDPPTPYGTP--------------PTVRRSPSPPE 139
Query: 922 TADRQPHRVCPA--PATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGP 749
+A P PA P P TP P+P PP PS + P
Sbjct: 140 SASPSPSPGPPAATPTPRPSSPTSTPPTDGETPRPPGPRSPSPSPGPPSCSPSPKSPSPP 199
Query: 748 GR---RNLPHPPAAACLPS 701
R+ P PP PS
Sbjct: 200 ASSPPRSRPGPPDYTTSPS 218
>gi|4507313|ref|NP_003160.1|| suppressor of Ty (S.cerevisiae) 5
homolog >gi|1845267 (U56402) SUPT5H [Homo sapiens]
Length = 1087
Score = 41.0 bits (94), Expect = 0.086
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = -3
Query: 1057 PLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSP-----PATADRQPHRVC 893
P +P P+ P +P NP Q+ G P + + APSP P+ + + H+V
Sbjct: 860 PGYPDPSSPQVNPQY---NP-QTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVA 915
Query: 892 PAPATHQ--HVP-QQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPP 722
P+PA +Q H P P P+ Y +P P G P G PG N PH P
Sbjct: 916 PSPAGYQNTHSPASYHPTPSPMAYQ------ASPSPSPVGYSPMTPGAPSPGGYN-PHTP 968
Query: 721 AA 716
+
Sbjct: 969 GS 970
>gi|2065177|emb|CAA73326| (Y12790) Supt5h protein [Homo sapiens]
>gi|4104824 (AF040253) transcription factor Tat-CT1 [Homo
sapiens]
Length = 1087
Score = 41.0 bits (94), Expect = 0.086
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = -3
Query: 1057 PLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSP-----PATADRQPHRVC 893
P +P P+ P +P NP Q+ G P + + APSP P+ + + H+V
Sbjct: 860 PGYPDPSSPQVNPQY---NP-QTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVA 915
Query: 892 PAPATHQ--HVP-QQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPP 722
P+PA +Q H P P P+ Y +P P G P G PG N PH P
Sbjct: 916 PSPAGYQNTHSPASYHPTPSPMAYQ------ASPSPSPVGYSPMTPGAPSPGGYN-PHTP 968
Query: 721 AA 716
+
Sbjct: 969 GS 970
>gi|2723380|dbj|BAA24075.1| (AB000516) DSIF p160 [Homo sapiens]
Length = 1087
Score = 41.0 bits (94), Expect = 0.086
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = -3
Query: 1057 PLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSP-----PATADRQPHRVC 893
P +P P+ P +P NP Q+ G P + + APSP P+ + + H+V
Sbjct: 860 PGYPDPSSPQVNPQY---NP-QTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVA 915
Query: 892 PAPATHQ--HVP-QQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPP 722
P+PA +Q H P P P+ Y +P P G P G PG N PH P
Sbjct: 916 PSPAGYQNTHSPASYHPTPSPMAYQ------ASPSPSPVGYSPMTPGAPSPGGYN-PHTP 968
Query: 721 AA 716
+
Sbjct: 969 GS 970
>gi|4884836|gb|AAD31829.1| (AF131877) NapG oxidoreductase
[Streptomyces collinus]
Length = 341
Score = 41.0 bits (94), Expect = 0.086
Identities = 44/133 (33%), Positives = 54/133 (40%), Gaps = 17/133 (12%)
Frame = -3
Query: 1078 PESTAAQPLWPP---------PNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPP 926
P ST+A W P PS+ T S PA P P +PSP
Sbjct: 168 PWSTSAGTSWTPRPPCSARPRSTRPSAPSRTTSSTPASGPRLP------APRGAASPSPS 221
Query: 925 A-TADRQPHRVCP------APATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSA 767
A R R CP APA APT + + P+PG PP CPS
Sbjct: 222 APVGPRTRRRTCPWSGSRAAPAPPNCAAPSASAPTGSPSPSS----PSPGRAPPAGCPSP 277
Query: 766 RGCIGPG-RRNLPHPPAAACLPSRSAQSIA 680
+G R L PA P+ ++IA
Sbjct: 278 AEPVGAEYGRQLDGVPALLADPAGRGRAIA 307
>gi|2498942|sp|Q62203|SP62_MOUSE SPLICEOSOME ASSOCIATED PROTEIN 62
(SAP 62) (SF3A66) >gi|633251|emb|CAA58703| (X83733)
spliceosome SAP62 [Mus musculus]
Length = 485
Score = 41.0 bits (94), Expect = 0.086
Identities = 40/123 (32%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
Frame = -3
Query: 1090 HPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADR 911
HP P P PP P HP +P SAG H + P H P PA +
Sbjct: 358 HPPTPGVHPPAPGVHPPA-PGVHPPAPGVHPPPSAGV----HPQAPGVH--PPAPAVHPQ 410
Query: 910 QPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGA--RPPGECPSARGCIGPGRRN 737
P PAP H P P P + APG +PPG PS PG
Sbjct: 411 APGVHPPAPGIHPQAPGVHPQPPPGVHP------AAPGVHPQPPGVHPS-----NPGVHP 459
Query: 736 LPHPP 722
P PP
Sbjct: 460 APMPP 464
>gi|2754752 (U88539) chromatin structural protein homolog Supt5hp [Mus
musculus]
Length = 1082
Score = 41.0 bits (94), Expect = 0.086
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = -3
Query: 1057 PLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSP-----PATADRQPHRVC 893
P +P P+ P +P NP Q+ G P + + APSP P+ + + H+V
Sbjct: 854 PGYPDPSSPQVNPQY---NP-QTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVA 909
Query: 892 PAPATHQ--HVP-QQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPP 722
P+PA +Q H P P P+ Y +P P G P G PG N PH P
Sbjct: 910 PSPAGYQNTHSPASYHPTPSPMAYQ------ASPSPSPVGYSPMTPGAPSPGGYN-PHTP 962
Query: 721 AA 716
+
Sbjct: 963 GS 964
>gi|4191720 (AF083061) thermostable lipase TliA [Pseudomonas
fluorescens]
Length = 476
Score = 40.6 bits (93), Expect = 0.11
Identities = 31/90 (34%), Positives = 47/90 (51%), Gaps = 2/90 (2%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
G GND+++ + + GG G+DT+ ++ +T+LF+ G D II TD+LVF
Sbjct: 373 GSDGNDLIQGG--KGADFIEGGKGNDTIRDNSGHNTFLFSGHFGQDRIIGYQPTDRLVFQ 430
Query: 3142 EGILAADVR--LLREGQDVVLDLGNGHDSIRL 3231
+ D+R G D VL G DS+ L
Sbjct: 431 GADGSTDLRDHAKAVGADTVLSF--GADSVTL 460
Score = 39.9 bits (91), Expect = 0.19
Identities = 31/92 (33%), Positives = 46/92 (49%), Gaps = 2/92 (2%)
Frame = +1
Query: 3952 LEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLV 4131
++GG G D ++ GG G+DT+ ++ +T+LF+ G D II TD+LV
Sbjct: 380 IQGGKGADFIE-----------GGKGNDTIRDNSGHNTFLFSGHFGQDRIIGYQPTDRLV 428
Query: 4132 FGEGILAADVR--LLREGQDVVLDLGNGHDSIRL 4227
F + D+R G D VL G DS+ L
Sbjct: 429 FQGADGSTDLRDHAKAVGADTVLSF--GADSVTL 460
Score = 39.9 bits (91), Expect = 0.19
Identities = 30/90 (33%), Positives = 47/90 (51%), Gaps = 2/90 (2%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
G G+D+++ + + GG G+DT+ ++ +T+LF+ G D II TD+LVF
Sbjct: 373 GSDGNDLIQGG--KGADFIEGGKGNDTIRDNSGHNTFLFSGHFGQDRIIGYQPTDRLVFQ 430
Query: 3640 EGILAADVR--LLREGQDVVLDLGNGHDSIRL 3729
+ D+R G D VL G DS+ L
Sbjct: 431 GADGSTDLRDHAKAVGADTVLSF--GADSVTL 460
Score = 38.7 bits (88), Expect = 0.44
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
G G+D+++ + + GG G+DT+ ++ +T+LF+ G D II TD+LVF
Sbjct: 373 GSDGNDLIQGG--KGADFIEGGKGNDTIRDNSGHNTFLFSGHFGQDRIIGYQPTDRLVFQ 430
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQVTVAG 4731
+ R + + D VT+ G
Sbjct: 431 GADGSTDLRDHAKAVGADTVLSFGADSVTLVG 462
>gi|140154|sp|P21485|YA32_PSEAE HYPOTHETICAL 13.0 KD PROTEIN IN ALGR3
3'REGION >gi|77644|pir||JQ0150 hypothetical 13K protein -
Pseudomonas aeruginosa
Length = 122
Score = 40.6 bits (93), Expect = 0.11
Identities = 38/126 (30%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Frame = +2
Query: 1949 AAAQCAICKKLPACRLPYWRRCRRCSLAPPRAH---CARR*I-----R*SRCGPAPQPCA 2104
A+ C+ C + R+P C PP CARR I R C A CA
Sbjct: 4 ASPACSRCCAASSARMPATACC------PPTGASRTCARRSIPWIAWRWITCSTATVACA 57
Query: 2105 AARNPWKPPERATA----RCITTAWWSPEA*PPRAKRPFCPG*KSSTPGLGRSLAFWKSS 2272
+R W PP+R T R W +P PP R C
Sbjct: 58 RSRRHWPPPKRRTTVLPWRACIPNWTTPTVTPPMHGRASC-------------------- 97
Query: 2273 TAPAWSASKTARSAWSGG 2326
W S +A S WS G
Sbjct: 98 ----WPDSASAASRWSAG 111
>gi|150987 (M32077) alginate regulatory protein P [Pseudomonas
aeruginosa]
Length = 352
Score = 40.6 bits (93), Expect = 0.11
Identities = 29/104 (27%), Positives = 43/104 (40%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPS 975
K + PAA + A P + P A +AKP KP P+
Sbjct: 252 KTAAAKPAAKPAAKPAAKPAAKPVAKSAAAKPAAKPAAKPAAKP-----------AAKPA 300
Query: 974 ILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPN 843
P+A A+ TA ++ AATPS P+ +++A A +G N
Sbjct: 301 AKPVAAKPAATKPATAPAAKPAATPSAPAAASSAASATPAAGSN 344
Score = 36.7 bits (83), Expect = 1.7
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 4/176 (2%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTI--CRL 981
K V + PAA + A P P A +AKP KP ++
Sbjct: 152 KTVAAKPAAKPAAKPAAKPAAKPATKTAAGKPAAKPTAKPAAKPAAKPAAKTAAAKPAAK 211
Query: 980 PSILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCT 801
P+ P+A A A TA+ ++ AA P+ +A+ AA + +
Sbjct: 212 PAAKPVAKPAAKPAAKTAA-AKPAAKPAAKPVAKPTAKPAAKTAAAKPAAK---PAAKPA 267
Query: 800 RRAPSR*VSKRAGMYRARAP*S-PASTSGGLP-SKPVSAKYCWLSKRGTPPGNSMMEPSA 627
+ ++ V+K A A P + PA+ P +KPV+AK P PSA
Sbjct: 268 AKPAAKPVAKSAAAKPAAKPAAKPAAKPAAKPAAKPVAAKPAATKPATAPAAKPAATPSA 327
>gi|4757846|ref|NP_004317.1|| B-cell CLL/lymphoma 9
>gi|2570024|emb|CAA73942| (Y13620) BCL9 [Homo sapiens]
Length = 1394
Score = 40.6 bits (93), Expect = 0.11
Identities = 48/143 (33%), Positives = 68/143 (46%), Gaps = 20/143 (13%)
Frame = -2
Query: 1226 PDSSPIWCSWSNTLSRKAPM*--WLPKN-----VPSTPAATVNTEATAAPIGPSRYTGVN 1068
P SP W S S K P+ +P N ++PA N E+ P +
Sbjct: 927 PAPSPGWTS-----SPKPPLQSPGIPPNHKAPLTMASPAMLGNVESGGPPPPTASQPASV 981
Query: 1067 SSPTALASAKPPIKPPRYALVQ---SCTICRL-----PSILPLAYAALASCAITASDSRS 912
+ P +L S+ P PP L Q S + R+ PS PL + A+ + A + DS
Sbjct: 982 NIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIKTVASSDDDSPP 1041
Query: 911 AATPSLPSTRN-----ASARAAADSGPNNCVVR*YLSLMSCTR 798
A +P+LPS N + + SGPN V LS M T+
Sbjct: 1042 ARSPNLPSMNNMPGMGINTQNPRISGPNPVVPMPTLSPMGMTQ 1084
>gi|4584086|emb|CAB40552.1| (AJ132828) p210 protein [Spermatozopsis
similis]
Length = 609
Score = 40.6 bits (93), Expect = 0.11
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 13/131 (9%)
Frame = -3
Query: 1072 STAAQPLWPPPNHPSSH-----------PDTHWSNPAQSAG--CPRYCHWRTPHWHRAPS 932
S A P + PP P+S+ P T+ PAQ P Y P +AP+
Sbjct: 39 SQPAPPAYAPPPQPASYAPQPAQQQAPAPPTYAPPPAQQQAPQAPAYAP-PAPAQQQAPA 97
Query: 931 PPATADRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIG 752
P A P V PAP Q P Q P W PAP A P + G +
Sbjct: 98 PQAPQAYAPAPVAPAP---QAPPPQQPPQQQQW-------APAPAAPPGAALLQSAGALA 147
Query: 751 PGRRNLPHPPAAACLPSRSAQSIA 680
+ AA + SR A A
Sbjct: 148 GPAPSAGQVAAAQAVLSRQAAPAA 171
>gi|6007542|gb|AAF00951.1|AF183139_1 (AF183139) trucnated type 2 EBNA2
[Cercopithecine herpesvirus 15]
Length = 464
Score = 40.6 bits (93), Expect = 0.11
Identities = 40/124 (32%), Positives = 47/124 (37%)
Frame = -3
Query: 1096 SGHPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
+ HP P+ T PL PP HP HP P Q P RTP W P PP +
Sbjct: 199 TAHPAPPKPTP--PLASPP-HPVHHPPVPHPTPPQPITVPLITLERTP-WRPGPPPPGPS 254
Query: 916 DRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRN 737
QP P P + V Q P T P PP P+A + PG +
Sbjct: 255 HLQP---TPRPGAPRVVTQPVCRPGV--MVPTLALPPLSAPLPP---PAASNPV-PGFVH 305
Query: 736 LPHP 725
LP P
Sbjct: 306 LPPP 309
>gi|2078483 (U43200) antifreeze glycopeptide AFGP polyprotein
precursor [Boreogadus saida]
Length = 507
Score = 40.6 bits (93), Expect = 0.11
Identities = 63/256 (24%), Positives = 92/256 (35%), Gaps = 5/256 (1%)
Frame = -2
Query: 1145 PSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPSILP 966
P+T AAT T ATAA S + A+A P P T R
Sbjct: 140 PAT-AATPATAATAATAATSATAATAARAATPATAATPATP--------ATAARAARAAT 190
Query: 965 LAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRRAPS 786
A AA A+ A TA+ + +AAT + +T +ARAA + + + AP+
Sbjct: 191 PATAATAATAATAATAATAATAATAATPARAARAATPATAPTPATAATPATAATAATAPT 250
Query: 785 R*VSKRAGMYRARAP*SPAS-TSGGLPSKP----VSAKYCWLSKRGTPPGNSMMEPSALM 621
RA RA P + A+ + P+ P +A + TP + A
Sbjct: 251 AATPARAA--RAATPATAATLATAATPATPATPATAATDATAATAATPARAATPATPATA 308
Query: 620 ATFK*PERCSDCAEIAWKDPATPKRRKSAIGNPSTEVILGLFNKRGSSV*LNTPFTEAPP 441
AT P + A A A R + P+T ++ T T A P
Sbjct: 309 ATPATPATAATAATAATAATAATPARAARAATPATAATPATAATAATAATAATAATAATP 368
Query: 440 VRVRTSPTVSFTKRAEIVSQA 378
R + T + A + A
Sbjct: 369 ARAARAATPATAATAATAATA 389
Score = 36.7 bits (83), Expect = 1.7
Identities = 60/243 (24%), Positives = 93/243 (37%), Gaps = 3/243 (1%)
Frame = -2
Query: 1145 PSTPAATVNTEATAAPIG-PSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPSIL 969
P+T AAT T ATAA P+R ++ T +A P S T
Sbjct: 110 PAT-AATAATAATAATAETPARAATPATAATPATAATPATAATAATAATSATAATAARAA 168
Query: 968 PLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRRAP 789
A AA + TA+ + AATP+ +T +A AA + + + T P
Sbjct: 169 TPATAATPATPATAARAARAATPATAATAATAATAATAA----------TAATAATAATP 218
Query: 788 SR*VSKRAGMYRARAP*SPA--STSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSALMAT 615
+R ++ A A P + A +T+ + P +A ++ TP + + +A AT
Sbjct: 219 AR-AARAATPATAPTPATAATPATAATAATAPTAATPARAARAATPATAATLATAATPAT 277
Query: 614 FK*PERCSDCAEIAWKDPATPKRRKSAIGNPSTEVILGLFNKRGSSV*LNTPFTEAPPVR 435
P + A A ATP R + P+T ++ T T A P R
Sbjct: 278 PATPATAATDATAA--TAATPARAATP-ATPATAATPATPATAATAATAATAATAATPAR 334
Query: 434 VRTSPT 417
+ T
Sbjct: 335 AARAAT 340
Score = 34.4 bits (77), Expect = 8.5
Identities = 30/96 (31%), Positives = 41/96 (42%)
Frame = -2
Query: 1133 AATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPSILPLAYA 954
AAT T ATAA + ++P A A P P A + A A
Sbjct: 374 AATPATAATAATAATAATAATAATPARAARAATPATPATPATPATP-----------ATA 422
Query: 953 ALASCAITASDSRSAATPSLPSTRNASARAAADSGP 846
A A+ A TA+ + +AAT + +T ARAA + P
Sbjct: 423 ATAATAATAATAATAATAATAATAPTPARAARAATP 458
>gi|1333636 (L47321) glycoprotein 150 [Murine herpesvirus 68]
>gi|1850850|emb|CAA70266| (Y09060) serine threonine rich
glycoprotein [murine herpesvirus 68] >gi|2317953 (U97553)
glycoprotein 150 [murine herpesvirus 68]
>gi|6625614|gb|AAF19315.1|AF105037_47 (AF105037) 51
[murid herpesvirus 4]
Length = 483
Score = 40.2 bits (92), Expect = 0.15
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Frame = -3
Query: 1081 IPESTA-AQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQP 905
+P+ TA A+P P P P P T + PA + P P + P ++ +P
Sbjct: 287 VPQPTAPAEPSKPEPTPPVDPPATEPNTPADPS-TPESTPPTDPPAPQPTPPAEPSNPEP 345
Query: 904 HRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHP 725
PAT ++P P + AD PAP PP E PS P + P P
Sbjct: 346 TPPVDPPATPPNIPADPSTPESTPPADP----PAPQPTPPAE-PSTPEPSTPAKAPAPEP 400
Query: 724 PAAACLPSRSAQS 686
PS + ++
Sbjct: 401 TPPPSGPSMTPEA 413
>gi|126743|sp|P27816|MAP4_HUMAN MICROTUBULE-ASSOCIATED PROTEIN 4
>gi|107082|pir||A33183 microtubule-associated protein 4 -
human >gi|187383 (M64571) microtubule-associated protein
4 [Homo sapiens]
Length = 1152
Score = 40.2 bits (92), Expect = 0.15
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Frame = -2
Query: 1139 TPAATVNTEATAAPIGPSRYT--GVNSSPTALASAKPPIKPPRYALVQSCTICRLPS--I 972
T + T+ T+ P P+ T G+N P +LAS P PP+ V S LPS +
Sbjct: 712 TSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSLASGLVPAAPPKRPAVASARPSILPSKDV 771
Query: 971 LPLAYAALASCAITASDSRSAATPSLPS--------TRNASARAAADSGPNN 840
P A + AS S+ A+ P+ S + +A A A +GP++
Sbjct: 772 KPKPIADAKAPEKRASPSKPASAPASRSGSKSTQTVAKTTTAAAVASTGPSS 823
>gi|4505099|ref|NP_002366.1|| microtubule-associated protein 4
>gi|641916 (U19727) microtubule-associated protein 4
[Homo sapiens]
Length = 1152
Score = 40.2 bits (92), Expect = 0.15
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Frame = -2
Query: 1139 TPAATVNTEATAAPIGPSRYT--GVNSSPTALASAKPPIKPPRYALVQSCTICRLPS--I 972
T + T+ T+ P P+ T G+N P +LAS P PP+ V S LPS +
Sbjct: 712 TSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSLASGLVPAAPPKRPAVASARPSILPSKDV 771
Query: 971 LPLAYAALASCAITASDSRSAATPSLPS--------TRNASARAAADSGPNN 840
P A + AS S+ A+ P+ S + +A A A +GP++
Sbjct: 772 KPKPIADAKAPEKRASPSKPASAPASRSGSKSTQTVAKTTTAAAVASTGPSS 823
>gi|322759|pir||PQ0479 pistil extensin-like protein (clone pMG14) -
common tobacco (fragment) >gi|19927|emb|CAA78393|
(Z14015) pistil extensin like protein [Nicotiana tabacum]
Length = 393
Score = 40.2 bits (92), Expect = 0.15
Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPN-HPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADR 911
P P+ + QP PPP+ P P S+P+ + P P +PSP +
Sbjct: 121 PSPPDQSTKQPPPPPPSKQPPPPPPVKASSPSPAKQPPPP---PPPVKSPSPSPAKQSPP 177
Query: 910 QPHRVCPAPATHQHVPQQTP------APTTAWYADTCL*CPAPGARP----PGECPSARG 761
P P+PAT + Q P P Y P+P A P P P+A
Sbjct: 178 PPRAPSPSPATQPPIKQPPPPSAKKSPPPPVAYPPVMAPSPSPAAEPPIIAPFPSPTANL 237
Query: 760 CIGPGRRNLPHPPAAACLP 704
+ P R P PP LP
Sbjct: 238 PLIPRR---PAPPVVKPLP 253
>gi|539639|pir||A53253 microtubule-associated protein 4 - human
(fragment)
Length = 982
Score = 40.2 bits (92), Expect = 0.15
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Frame = -2
Query: 1139 TPAATVNTEATAAPIGPSRYT--GVNSSPTALASAKPPIKPPRYALVQSCTICRLPS--I 972
T + T+ T+ P P+ T G+N P +LAS P PP+ V S LPS +
Sbjct: 611 TSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSLASGLVPAAPPKRPAVASARPSILPSKDV 670
Query: 971 LPLAYAALASCAITASDSRSAATPSLPS--------TRNASARAAADSGPNN 840
P A + AS S+ A+ P+ S + +A A A +GP++
Sbjct: 671 KPKPIADAKAPEKRASPSKPASAPASRSGSKSTQTVAKTTTAAAVASTGPSS 722
>gi|1706520|sp|P54258|DRPL_RAT ATROPHIN-1
(DENTATORUBRAL-PALLIDOLUYSIAN ATROPHY PROTEIN)
>gi|1049102 (U31777) atrophin-1 [Rattus norvegicus]
Length = 1183
Score = 40.2 bits (92), Expect = 0.15
Identities = 63/232 (27%), Positives = 83/232 (35%), Gaps = 18/232 (7%)
Frame = -3
Query: 1096 SGHPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
SG P P+ AA PP+ HP P S+G P + P+ P A
Sbjct: 230 SGPPMGPKGGAAASSVGPPSGGKQHPPPTTPIPISSSG----ASGAPP--AKPPNTPVGA 283
Query: 916 DRQPHRVCPAPATHQHV-PQQTPAPTTAWYADTCL*CPAPGARP-PGECPSARGCIGPGR 743
P P PAT HV P P P + P GA+P PG PS +G G
Sbjct: 284 GNLPS--APPPATFPHVTPNLPPPPALRPLNNASASPPGMGAQPIPGHLPSPH-AMGQGM 340
Query: 742 RNLPHPPAAACLPSRSAQSIAGCLNVAPHRVI---------XXXXXXXXXXPLNSQRDAL 590
LP P + S + + AP + SQ A
Sbjct: 341 SGLPPGPEKGPTLAPSPHPLPPASSSAPGPPMRYPYSSCSSSSVAASSSSSAATSQYPAS 400
Query: 589 IVLKSPGRTPPPPSAANQR*ATHPPR*YWGCSTSAAVRFD*TPHSP-------RHRRSGC 431
L S + PPP++ + + PP+ S AV P P + +
Sbjct: 401 QTLPSYPHSFPPPTSMSV--SNQPPKYTQPSLPSQAVWSQGPPPPPPPYGRLLPNNNTHP 458
Query: 430 APHPPCHSQS 401
P PP QS
Sbjct: 459 GPFPPTGGQS 468
Score = 34.8 bits (78), Expect = 6.5
Identities = 41/133 (30%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQ 908
P S + QP P PS WS P + H P PP
Sbjct: 412 PPTSMSVSNQP--PKYTQPSLPSQAVWSQGPPPPPPPYGRLLPNNNTHPGPFPPTGGQST 469
Query: 907 PHRVCPAPATHQHVPQQ--TPAPTTAWYADTCL*CPAPGARP-PGECPSARGC----IGP 749
H PAPA H H QQ P P + P PGA P P E ++ + P
Sbjct: 470 AHP--PAPAHHHHQQQQQPQPQPQPQQHHHGNSGPPPPGAYPHPLESSNSHHAHPYNMSP 527
Query: 748 GRRNL-PHPPAAACLPSRSAQ 689
+L P+PP A LP Q
Sbjct: 528 SLGSLRPYPPGPAHLPPSHGQ 548
Score = 27.8 bits (60), Expect(2) = 5.0
Identities = 31/105 (29%), Positives = 42/105 (39%), Gaps = 9/105 (8%)
Frame = -3
Query: 1000 PAQSAGCPRYCHWRTPHWHRAPSPPA--------TADRQPHRVCPA-PATHQHVPQQTPA 848
P G P TP +R SPPA + P + PA P++ +P A
Sbjct: 648 PGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSSLSSLPPPPAA 707
Query: 847 PTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPPAAACLPSRSAQS 686
PTT L P E + + P R P PP +PS ++QS
Sbjct: 708 PTTG----PPLTATQIKQEPAEEYETPESPVPPARSPSP-PPKVVDVPSHASQS 756
Score = 25.8 bits (55), Expect(2) = 5.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -2
Query: 1142 STPAATVNTEA----TAAPIGPSRYTGVNSSPTALASAKPP 1032
ST ATV + TA+P GP +Y+ SP + +A PP
Sbjct: 608 STVIATVASSPAGYKTASPPGPPQYSKRAPSPGSYKTATPP 648
>gi|482295|pir||A36128 regulatory protein algP - Pseudomonas
aeruginosa (isolate cystic fibrosis)
Length = 352
Score = 39.9 bits (91), Expect = 0.19
Identities = 29/104 (27%), Positives = 43/104 (40%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPS 975
K + PAA + A P + P A +AKP KP P+
Sbjct: 252 KTAAAKPAAKPAAKPAAKPAAKHVAKPAAAKPAAKPAAKPAAKP-----------AAKPA 300
Query: 974 ILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPN 843
P+A A+ TA ++ AATPS P+ +++A A +G N
Sbjct: 301 AKPVAAKPAAAKPATAPAAKPAATPSAPAAASSAASATPAAGSN 344
>gi|81286|pir||S22697 extensin - Volvox carteri (fragment)
>gi|21992|emb|CAA46283| (X65165) extensin [Volvox
carteri]
Length = 464
Score = 39.9 bits (91), Expect = 0.19
Identities = 37/132 (28%), Positives = 48/132 (36%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQ 908
P P P PPP SS P P+ S PR +PSPP +
Sbjct: 289 PPPPPPPRVSPSPPPPQPVSSPPPPPPPRPSPSPPPPR----------SSPSPPPPSPPP 338
Query: 907 PHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPH 728
P P P+ P+ +P+P + P P A PP P A P R P
Sbjct: 339 PSPPPPRPSPSPPPPRSSPSPPPPVVSPP---PPPPRASPPP--PPASSPPPPPRPPPPS 393
Query: 727 PPAAACLPSRSA 692
PP + P+ +A
Sbjct: 394 PPPSPPPPATAA 405
Score = 38.3 bits (87), Expect = 0.57
Identities = 37/125 (29%), Positives = 41/125 (32%), Gaps = 2/125 (1%)
Frame = -3
Query: 1096 SGHPDIPESTAAQP--LWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPA 923
S P P S+ + P PPP+ P P P S P P RA PP
Sbjct: 319 SPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPPPPRSSPSPPPPVVSPPPPPPRASPPPP 378
Query: 922 TADRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGR 743
A P P P + P P P TA A PP PS GP
Sbjct: 379 PASSPPPPPRPPPPSP---PPSPPPPATA------------AANPPSPAPSRSRAGGPPL 423
Query: 742 RNLPHPP 722
P PP
Sbjct: 424 GTRPPPP 430
Score = 37.9 bits (86), Expect = 0.75
Identities = 35/122 (28%), Positives = 44/122 (35%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQ 908
P P + P PPP SS P PA + PR +P +P P T+
Sbjct: 222 PPPPPRVSTSP--PPPARVSSSPP-----PATRSPPPRRITSPSPVLTASPPLPKTSPPP 274
Query: 907 PHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPH 728
P RV P+P P P P + P P + PP P P R+ P
Sbjct: 275 PPRVPPSPPPPVASPPPPPPPRVSPSPPP----PQPVSSPPPPPPPRPSPSPPPPRSSPS 330
Query: 727 PP 722
PP
Sbjct: 331 PP 332
>gi|995557|emb|CAA61623| (X89453) DRPLA [Rattus norvegicus]
Length = 1182
Score = 39.9 bits (91), Expect = 0.19
Identities = 53/195 (27%), Positives = 71/195 (36%), Gaps = 11/195 (5%)
Frame = -3
Query: 1096 SGHPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
SG P P+ AA PP+ HP P S+G P + P+ P A
Sbjct: 230 SGPPMGPKGGAAASSVGPPSGGKQHPPPTTPIPISSSG----ASGAPP--AKPPNTPVGA 283
Query: 916 DRQPHRVCPAPATHQHV-PQQTPAPTTAWYADTCL*CPAPGARP-PGECPSARGCIGPGR 743
P P PAT HV P P P + P GA+P PG PS +G G
Sbjct: 284 GNLPS--APPPATFPHVTPNLPPPPALRPLNNASASPPGMGAQPIPGHLPSPH-AMGQGM 340
Query: 742 RNLPHPPAAACLPSRSAQSIAGCLNVAPHRVI---------XXXXXXXXXXPLNSQRDAL 590
LP P + S + + AP + SQ A
Sbjct: 341 SGLPPGPEKGPTLAPSPHPLPPASSSAPGPPMRYPYSSCSSSSVAASSSSSAATSQYPAS 400
Query: 589 IVLKSPGRTPPPPSAANQR*ATHPPR 512
L S + PPP++ + + PP+
Sbjct: 401 QTLPSYPHSFPPPTSMSV--SNQPPK 424
>gi|1002380 (U24189) RRM-type RNA binding protein [Caenorhabditis
elegans]
Length = 398
Score = 39.5 bits (90), Expect = 0.25
Identities = 32/112 (28%), Positives = 44/112 (38%), Gaps = 10/112 (8%)
Frame = -3
Query: 1057 PLWPPPNHPSSHPDTHWSNPAQSAGCPRY----------CHWRTPHWHRAPSPPATADRQ 908
PL P N P + P H + A + G P Y ++ + P PP+
Sbjct: 225 PLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQGQYPPVPPPPPSVTPMP 284
Query: 907 PHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPH 728
P P P T P+ P P++ + P P PPG P PG +P
Sbjct: 285 P----PMPPTPGMTPRPPPPPSSGMW-------PPPPPPPPGRTPGP-----PGMPGMPP 328
Query: 727 PP 722
PP
Sbjct: 329 PP 330
>gi|730411|sp|Q07162|PRTG_ERWCH SECRETED PROTEASE G PRECURSOR (PROG)
>gi|1073289|pir||S48132 metalloproteinase G (EC 3.4.24.-)
- Erwinia chrysanthemi >gi|297861|emb|CAA50501| (X71365)
protease G [Erwinia chrysanthemi]
Length = 475
Score = 39.5 bits (90), Expect = 0.25
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFAD-----------TYLFNK---GDGHD 4593
GG+G DV+ + +DN + GG G+D LYG AD Y + K D
Sbjct: 341 GGSGHDVIVGNL--SDNRIDGGAGNDVLYGDGGADILTGGAGKDIFVYAWEKDSLSSAPD 398
Query: 4594 TIIE-QGGTDKLVFGAGLSRKEARFTR--SGDDLSLLFNGSEDQVTVAGWFNGSGHQ 4755
TI + Q G D++ A + RF SG ++ N W + SGH+
Sbjct: 399 TITDFQRGEDRIDLSAFNKNHDLRFVDNFSGKGNEVVLNWDSQSHQTNMWLHLSGHE 455
Score = 37.9 bits (86), Expect = 0.75
Identities = 29/90 (32%), Positives = 39/90 (43%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3639
GG+G DV+ + +DN + GG G+D LYG AD I GG K +F
Sbjct: 341 GGSGHDVIVGNL--SDNRIDGGAGNDVLYGDGGAD-------------ILTGGAGKDIF- 384
Query: 3640 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3729
+ A + L D + D G D I L
Sbjct: 385 --VYAWEKDSLSSAPDTITDFQRGEDRIDL 412
Score = 37.5 bits (85), Expect = 0.98
Identities = 29/90 (32%), Positives = 40/90 (44%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKLVFG 3141
GG+G+DV+ + +DN + GG G+D LYG AD I GG K +F
Sbjct: 341 GGSGHDVIVGNL--SDNRIDGGAGNDVLYGDGGAD-------------ILTGGAGKDIF- 384
Query: 3142 EGILAADVRLLREGQDVVLDLGNGHDSIRL 3231
+ A + L D + D G D I L
Sbjct: 385 --VYAWEKDSLSSAPDTITDFQRGEDRIDL 412
Score = 36.7 bits (83), Expect = 1.7
Identities = 29/90 (32%), Positives = 39/90 (43%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4137
GG+G DV+ + +DN + GG G+D LYG AD I GG K +F
Sbjct: 341 GGSGHDVIVGNL--SDNRIDGGAGNDVLYGDGGAD-------------ILTGGAGKDIF- 384
Query: 4138 EGILAADVRLLREGQDVVLDLGNGHDSIRL 4227
+ A + L D + D G D I L
Sbjct: 385 --VYAWEKDSLSSAPDTITDFQRGEDRIDL 412
>gi|2274845|dbj|BAA21534| (D88461) N-WASP [Rattus rattus]
Length = 501
Score = 39.5 bits (90), Expect = 0.25
Identities = 36/119 (30%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPA----- 923
P P S P PPP H S P PA+ G P R P P PP+
Sbjct: 275 PPPPPSRGGPPPPPPPPHSSGPPPP----PARGRGAPPPPPSRAPTAAPPPPPPSRPGVV 330
Query: 922 TADRQPHRVCPAP--ATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGP 749
P+R+ P P A P P P A + P P PP P G
Sbjct: 331 VPPPPPNRMYPPPPPALPSSAPSGPPPPPPLSMAGSTAPPPPPPPPPPPGPPPPPGLPSD 390
Query: 748 GRRNLP 731
G +P
Sbjct: 391 GDHQVP 396
Score = 35.6 bits (80), Expect = 3.8
Identities = 33/109 (30%), Positives = 38/109 (34%), Gaps = 2/109 (1%)
Frame = -3
Query: 1048 PPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAP--SPPATADRQPHRVCPAPATH 875
PPP P H PA+ G P P RAP +PP +P V P P +
Sbjct: 284 PPPPPPPPHSSGPPPPPARGRGAP------PPPPSRAPTAAPPPPPPSRPGVVVPPPPPN 337
Query: 874 QHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPP 722
+ P PA L AP PP S G P P PP
Sbjct: 338 RMYPPPPPA----------LPSSAPSGPPPPPPLSMAGSTAPPPPPPPPPP 378
>gi|100215|pir||S14970 extensin class I (clone w17-1) - tomato
>gi|1345531|emb|CAA39212| (X55681) extensin (class I)
[Lycopersicon esculentum]
Length = 132
Score = 39.5 bits (90), Expect = 0.25
Identities = 32/122 (26%), Positives = 49/122 (39%), Gaps = 3/122 (2%)
Frame = -3
Query: 1087 PDIPESTAAQPLW---PPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
P P + P + PPP PS P ++ +P + P P+++++P PP
Sbjct: 15 PPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPP-----PPYYYKSPPPP--- 66
Query: 916 DRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRN 737
D P P P ++ P +P+P P P PP S+ P N
Sbjct: 67 DPSP----PPPYYYKSPPPPSPSP------------PPPSPSPPPPTYSSPPPPPPFYEN 110
Query: 736 LPHPP 722
+P PP
Sbjct: 111 IPLPP 115
>gi|3811372 (AF099925) No definition line found [Caenorhabditis
elegans]
Length = 482
Score = 39.1 bits (89), Expect = 0.33
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 1366 VLDLDGDGIETVAAGKNILFDHDG-DGITHASGWVKSDDGLLVLDRNGNGRIDNGSELFG 1542
V+D D G T+ K + F+H G D T A + ++D+ N +G++DN E G
Sbjct: 269 VVDADNSGTLTLDEAKRVAFEHYGFDEATLAPFFGQADE-------NEDGQLDN-VEFAG 320
Query: 1543 ADTVLANGHKATSGFEALRDLDSNGDGLFNAADA 1644
+V+ + ++ +D+NGDGL + A+A
Sbjct: 321 FRSVI-RARSVRDAMDKMKRIDTNGDGLVSNAEA 353
>gi|4680231|gb|AAD27584.1|AF118275_1 (AF118275) atrophin-related
protein ARP [Homo sapiens]
Length = 995
Score = 39.1 bits (89), Expect = 0.33
Identities = 42/133 (31%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Frame = -3
Query: 1090 HPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQ----SAGCPRY-CHWRTPHWHRAPSPP 926
H I ++ A P PP HP HP H P Q SAG P H + P + P P
Sbjct: 226 HTHIQQAPALHPQRPPSPHPPPHPSPH--PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP 283
Query: 925 ATADRQPHRVCPAPATHQHVPQ-----QTPAPTT--AWYADTCL*CPAPGARPPGECPSA 767
+ P P P +P Q P T+ A Y T L PA + + P
Sbjct: 284 HSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPR 343
Query: 766 RGCIGPGRRNLPH--PPAAACLPSRSA 692
+ P +PH PP +P A
Sbjct: 344 EQPLPPAPLAMPHIKPPPTTPIPQLPA 370
>gi|3413878|dbj|BAA32303| (AB007927) KIAA0458 protein [Homo sapiens]
Length = 1268
Score = 39.1 bits (89), Expect = 0.33
Identities = 42/133 (31%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Frame = -3
Query: 1090 HPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQ----SAGCPRY-CHWRTPHWHRAPSPP 926
H I ++ A P PP HP HP H P Q SAG P H + P + P P
Sbjct: 529 HTHIQQAPALHPQRPPSPHPPPHPSPH--PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP 586
Query: 925 ATADRQPHRVCPAPATHQHVPQ-----QTPAPTT--AWYADTCL*CPAPGARPPGECPSA 767
+ P P P +P Q P T+ A Y T L PA + + P
Sbjct: 587 HSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPR 646
Query: 766 RGCIGPGRRNLPH--PPAAACLPSRSA 692
+ P +PH PP +P A
Sbjct: 647 EQPLPPAPLAMPHIKPPPTTPIPQLPA 673
>gi|3372354 (AF041104) atrophin-1 like protein [Homo sapiens]
Length = 1012
Score = 39.1 bits (89), Expect = 0.33
Identities = 42/133 (31%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Frame = -3
Query: 1090 HPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQ----SAGCPRY-CHWRTPHWHRAPSPP 926
H I ++ A P PP HP HP H P Q SAG P H + P + P P
Sbjct: 243 HTHIQQAPALHPQRPPSPHPPPHPSPH--PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP 300
Query: 925 ATADRQPHRVCPAPATHQHVPQ-----QTPAPTT--AWYADTCL*CPAPGARPPGECPSA 767
+ P P P +P Q P T+ A Y T L PA + + P
Sbjct: 301 HSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPR 360
Query: 766 RGCIGPGRRNLPH--PPAAACLPSRSA 692
+ P +PH PP +P A
Sbjct: 361 EQPLPPAPLAMPHIKPPPTTPIPQLPA 387
>gi|3411015 (AF016005) atrophin-1 related protein [Homo sapiens]
Length = 1012
Score = 39.1 bits (89), Expect = 0.33
Identities = 42/133 (31%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Frame = -3
Query: 1090 HPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQ----SAGCPRY-CHWRTPHWHRAPSPP 926
H I ++ A P PP HP HP H P Q SAG P H + P + P P
Sbjct: 243 HTHIQQAPALHPQRPPSPHPPPHPSPH--PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP 300
Query: 925 ATADRQPHRVCPAPATHQHVPQ-----QTPAPTT--AWYADTCL*CPAPGARPPGECPSA 767
+ P P P +P Q P T+ A Y T L PA + + P
Sbjct: 301 HSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPR 360
Query: 766 RGCIGPGRRNLPH--PPAAACLPSRSA 692
+ P +PH PP +P A
Sbjct: 361 EQPLPPAPLAMPHIKPPPTTPIPQLPA 387
>gi|6688241|emb|CAB65124.1| (AJ007421) spalt-like zinc finger protein
[Homo sapiens]
Length = 1272
Score = 39.1 bits (89), Expect = 0.33
Identities = 63/284 (22%), Positives = 104/284 (36%), Gaps = 5/284 (1%)
Frame = -2
Query: 1157 PKNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLP 978
P +P A ++ A AA I S ++P A A+P +P A
Sbjct: 227 PSQLPGLAALPLSAGAPAAAIAGSG----PAAPAAFEGAQPLSRPESGASTPG------G 276
Query: 977 SILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTR 798
P A AA ++ A+ + + A S S++ SA P SL+
Sbjct: 277 PAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPG--------SLLGAAP 328
Query: 797 RAPSR*V--SKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSAL 624
PS + + +G+ S A+T+ L K+ ++G PP S+ EP A
Sbjct: 329 GLPSPLLPQTSASGVIFPNPLVSIAATANALDPLSALMKH----RKGKPPNVSVFEPKAS 384
Query: 623 MATFK*PERCSDCAEIAWKDPATPKRRKSAIGNP--STEVILGLFNKRGS-SV*LNTPFT 453
+C CA++ D A +S G + F+ +G+ V
Sbjct: 385 AEDPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKE 444
Query: 452 EAPPVRVRTSPTVSFTKRAEIVSQAPFGRRVPSNVLSPNRNWLEGLPHL 306
+ P +++ P + S P+G +P P WL+ P L
Sbjct: 445 KYPHIQMNPYPVPEYLDNVPTCSGIPYGMSLPPE--KPVTTWLDSKPVL 491
>gi|3811371 (AF099925) contains similarity to EF-hand calcium-binding
domain (Pfam: efhand.hmm, scores: 10.54, 15.90, 11.36,
14.61, 12.26) [Caenorhabditis elegans]
Length = 567
Score = 39.1 bits (89), Expect = 0.33
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 1366 VLDLDGDGIETVAAGKNILFDHDG-DGITHASGWVKSDDGLLVLDRNGNGRIDNGSELFG 1542
V+D D G T+ K + F+H G D T A + ++D+ N +G++DN E G
Sbjct: 269 VVDADNSGTLTLDEAKRVAFEHYGFDEATLAPFFGQADE-------NEDGQLDN-VEFAG 320
Query: 1543 ADTVLANGHKATSGFEALRDLDSNGDGLFNAADA 1644
+V+ + ++ +D+NGDGL + A+A
Sbjct: 321 FRSVI-RARSVRDAMDKMKRIDTNGDGLVSNAEA 353
>gi|544262|sp|Q03211|EXLP_TOBAC PISTIL-SPECIFIC EXTENSIN-LIKE PROTEIN
PRECURSOR (PELP) >gi|322761|pir||JQ1696 pistil
extensin-like protein precursor (clone pMG15) - common
tobacco >gi|19929|emb|CAA78397| (Z14019) pistil extensin
like protein [Nicotiana tabacum]
Length = 426
Score = 38.7 bits (88), Expect = 0.44
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPP----NHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPAT 920
P P+ +A QP PPP + P P +P+ + P P +APSP +
Sbjct: 158 PSPPDQSAKQPPQPPPAKQPSPPPPPPPVKAPSPSPAKQPPP-----PPPPVKAPSP-SP 211
Query: 919 ADRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARP----PGECPSARGCIG 752
A + P + P P + P P P A Y P+P A P P P A +
Sbjct: 212 ATQPPTKQPPPPPRAKKSPLLPPPPPVA-YPPVMTPSPSPAAEPPIIAPFPSPPANPPLI 270
Query: 751 PGRRNLPHPPAAACLP 704
P R P PP LP
Sbjct: 271 PRR---PAPPVVKPLP 283
>gi|728867|sp|P40602|APG_ARATH ANTER-SPECIFIC PROLINE-RICH PROTEIN APG
PRECURSOR >gi|99694|pir||S21961 proline-rich protein APG
- Arabidopsis thaliana >gi|22599|emb|CAA42925| (X60377)
APG [Arabidopsis thaliana]
Length = 534
Score = 38.7 bits (88), Expect = 0.44
Identities = 38/134 (28%), Positives = 48/134 (35%), Gaps = 1/134 (0%)
Frame = -3
Query: 1096 SGHPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATA 917
S P P + +P+ PP P P A P C P P PP
Sbjct: 66 SPKPVAPPGPSPKPVAPPGPSPCPSPPPKPQPKPPPAPSPSPCPSPPPKPQPKPVPPPAC 125
Query: 916 DRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRN 737
P + P PA P PAP A + CP+P +PP P GP +
Sbjct: 126 PPTPPKPQPKPAP---PPAPKPAPPP---APKPVPCPSP-PKPPAPTPKPVPPHGPPPKP 178
Query: 736 LPHP-PAAACLPSRS 695
P P PA + P+ S
Sbjct: 179 APAPTPAPSPKPAPS 193
>gi|999638|pdb|1SRP| Serratia Protease (E.C.3.4.24.40) (Serralysin)
Complexed With Zinc
Length = 471
Score = 38.7 bits (88), Expect = 0.44
Identities = 29/87 (33%), Positives = 41/87 (46%)
Frame = +1
Query: 4456 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKLVFG 4635
GG+G+DV+ + +A+NVL GG G+D L+G AD G G D + +D
Sbjct: 333 GGSGNDVIVGN--AANNVLKGGAGNDVLFGGGGADELW--GGAGKDIFVFSAASDS---A 385
Query: 4636 AGLSRKEARFTRSGDDLSLLFNGSEDQ 4716
G S F + D + L F E Q
Sbjct: 386 PGASDWIRDFQKGIDKIDLSFFNKEAQ 412
Score = 37.1 bits (84), Expect = 1.3
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 2962 GGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3126
GG+GNDV+ + +A+NVL GG G+D L+G AD G G D + +D
Sbjct: 333 GGSGNDVIVGN--AANNVLKGGAGNDVLFGGGGADELW--GGAGKDIFVFSAASD 383
Score = 36.4 bits (82), Expect = 2.2
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 3460 GGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFNQGDGHDTIIEQGGTD 3624
GG+G+DV+ + +A+NVL GG G+D L+G AD G G D + +D
Sbjct: 333 GGSGNDVIVGN--AANNVLKGGAGNDVLFGGGGADELW--GGAGKDIFVFSAASD 383
Score = 35.2 bits (79), Expect = 5.0
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 3958 GGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFNKGDGHDTIIEQGGTD 4122
GG+G+DV+ + +A+NVL GG G+D L+G AD G G D + +D
Sbjct: 333 GGSGNDVIVGN--AANNVLKGGAGNDVLFGGGGADELW--GGAGKDIFVFSAASD 383
>gi|4092666 (AF083132) putative 13.1 kDa E3 protein [Porcine
adenovirus 3]
Length = 128
Score = 38.3 bits (87), Expect = 0.57
Identities = 44/139 (31%), Positives = 53/139 (37%), Gaps = 5/139 (3%)
Frame = -3
Query: 1072 STAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHW--HRAPSPPATADRQPHR 899
ST A WPPP+ S+ P S G P R P W + SPPATA R
Sbjct: 18 STTAATCWPPPSSCSA----RCGPPRPSCGKPS----RPPLWLLPQNKSPPATAPAASRR 69
Query: 898 VCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGAR---PPGECPSARGCIGPGRRNLPH 728
C TP P+ +C P P A PPG+ S G + P
Sbjct: 70 WC----------STTPPPS------SCPGGPHPPAHRHGPPGQLDS-----GSDAQQEPR 108
Query: 727 PPAAACLPSRSAQSIAGCLNVAPH 656
P AA +A + G L PH
Sbjct: 109 PAAA------TAPHLCGTLRRGPH 126
>gi|2281443 (U89164) endo-1,3-1,4-beta-glycanase homolog
[Sinorhizobium meliloti]
Length = 465
Score = 38.3 bits (87), Expect = 0.57
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 13/74 (17%)
Frame = +1
Query: 3502 ADNVLSGGTG---------DDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKL-VFGEGIL 3651
ADN++ GG+G +D L G+ ADT++F +G+G D I + D + + G G
Sbjct: 109 ADNIIKGGSGTQTIDGRGGNDVLIGAGGADTFVFARGNGSDLITDFNYDDIVRLDGYGFT 168
Query: 3652 AAD---VRLLREGQDVVLDLGNGHDSI 3723
+ + + +EG D+ L L +G +
Sbjct: 169 SFEQILSNVAQEGADLRLHLADGESLV 195
Score = 37.5 bits (85), Expect = 0.98
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 13/74 (17%)
Frame = +1
Query: 4000 ADNVLIGGTG---------DDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKL-VFGEGIL 4149
ADN++ GG+G +D L G+ ADT++F +G+G D I + D + + G G
Sbjct: 109 ADNIIKGGSGTQTIDGRGGNDVLIGAGGADTFVFARGNGSDLITDFNYDDIVRLDGYGFT 168
Query: 4150 AAD---VRLLREGQDVVLDLGNGHDSI 4221
+ + + +EG D+ L L +G +
Sbjct: 169 SFEQILSNVAQEGADLRLHLADGESLV 195
Score = 37.1 bits (84), Expect = 1.3
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 13/74 (17%)
Frame = +1
Query: 3004 ADNVLIGGTG---------DDTLYGSAFADTYLFNQGDGHDTIIEQGGTDKL-VFGEGIL 3153
ADN++ GG+G +D L G+ ADT++F +G+G D I + D + + G G
Sbjct: 109 ADNIIKGGSGTQTIDGRGGNDVLIGAGGADTFVFARGNGSDLITDFNYDDIVRLDGYGFT 168
Query: 3154 AAD---VRLLREGQDVVLDLGNGHDSI 3225
+ + + +EG D+ L L +G +
Sbjct: 169 SFEQILSNVAQEGADLRLHLADGESLV 195
Score = 36.4 bits (82), Expect = 2.2
Identities = 34/123 (27%), Positives = 61/123 (48%), Gaps = 13/123 (10%)
Frame = +1
Query: 4498 ADNVLSGGTG---------DDTLYGSAFADTYLFNKGDGHDTIIEQGGTDKL-VFGAGLS 4647
ADN++ GG+G +D L G+ ADT++F +G+G D I + D + + G G +
Sbjct: 109 ADNIIKGGSGTQTIDGRGGNDVLIGAGGADTFVFARGNGSDLITDFNYDDIVRLDGYGFT 168
Query: 4648 RKE---ARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGHQVESLVFQDGTVLSAEVERLIA 4818
E + + G DL L E V + N + ++++ F+ ++R +
Sbjct: 169 SFEQILSNVAQEGADLRLHLADGESLV----FANTTADELQAHQFR------LSLDRSVL 218
Query: 4819 AMALSPAVTTMQASVG 4866
+ S T+Q G
Sbjct: 219 SQTFSDEFNTLQLRNG 234
>gi|1652714|dbj|BAA17634| (D90907) hypothetical protein [Synechocystis
sp.]
Length = 3016
Score = 38.3 bits (87), Expect = 0.57
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLY----GSAFADTYLFNQGDGHDTIIEQ 3114
++ L GG GND+L S N L GG GDDT + AF + DG+D +
Sbjct: 2235 NDSLFGGLGNDILDTSGDRGTNNLNGGDGDDTFFLGQGDKAFGN-------DGNDRFFMR 2287
Query: 3115 GGTDKLVFG----EGILAADVRLLREGQDVVLDLGNGHDSIRLK 3234
G L+ G + AD+ + +LD G D+I LK
Sbjct: 2288 GSGRNLISGGAGADHFWIADID-FTNSFNAILDFELGIDTIGLK 2330
Score = 37.9 bits (86), Expect = 0.75
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = +1
Query: 3445 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLY----GSAFADTYLFNQGDGHDTIIEQ 3612
++ L GG G+D+L S N L+GG GDDT + AF + DG+D +
Sbjct: 2235 NDSLFGGLGNDILDTSGDRGTNNLNGGDGDDTFFLGQGDKAFGN-------DGNDRFFMR 2287
Query: 3613 GGTDKLVFG----EGILAADVRLLREGQDVVLDLGNGHDSIRLK 3732
G L+ G + AD+ + +LD G D+I LK
Sbjct: 2288 GSGRNLISGGAGADHFWIADID-FTNSFNAILDFELGIDTIGLK 2330
Score = 36.4 bits (82), Expect = 2.2
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLY----GSAFADTYLFNKGDGHDTIIEQ 4110
++ L GG G+D+L S N L GG GDDT + AF + DG+D +
Sbjct: 2235 NDSLFGGLGNDILDTSGDRGTNNLNGGDGDDTFFLGQGDKAFGN-------DGNDRFFMR 2287
Query: 4111 GGTDKLVFG----EGILAADVRLLREGQDVVLDLGNGHDSIRLK 4230
G L+ G + AD+ + +LD G D+I LK
Sbjct: 2288 GSGRNLISGGAGADHFWIADID-FTNSFNAILDFELGIDTIGLK 2330
Score = 35.2 bits (79), Expect = 5.0
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLY----GSAFADTYLFNKGDGHDTIIEQ 4608
++ L GG G+D+L S N L+GG GDDT + AF + DG+D +
Sbjct: 2235 NDSLFGGLGNDILDTSGDRGTNNLNGGDGDDTFFLGQGDKAFGN-------DGNDRFFMR 2287
Query: 4609 GGTDKLVFG 4635
G L+ G
Sbjct: 2288 GSGRNLISG 2296
>gi|94816|pir||A35630 regulatory protein algR3 - Pseudomonas
aeruginosa
Length = 340
Score = 38.3 bits (87), Expect = 0.57
Identities = 44/179 (24%), Positives = 67/179 (36%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPS 975
K V + AA + A P + + P A +AKP KP A + P+
Sbjct: 152 KTVAANAAAKPAAKPAAKPAAKTAAAKPAAKPAAKPAAKPAAKPA--AKTAAAKPAAKPA 209
Query: 974 ILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRR 795
P+A A + A TA+ ++ AA P+ +A+ AA + + +
Sbjct: 210 AKPVAKPAANAAAKTAA-AKPAAKPAAKPVAKPAAKPAAKTAAAKPAAK------PAAKH 262
Query: 794 APSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSALMA 618
+K A A A PA+ +KPV+AK P N+ PSA A
Sbjct: 263 VAKPAAAKPAAKPAANAAAKPAAKPA---AKPVAAKPAAAKPATAPAANAAATPSATAA 318
Score = 34.8 bits (78), Expect = 6.5
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Frame = -2
Query: 1136 PAATVNTEATAAPIGPSRYTGVNSSPTAL-----ASAKPPIKPPRYALVQSCTICRLPSI 972
PAA + A P + + P A A+AKP KP A + P+
Sbjct: 233 PAAKPVAKPAAKPAAKTAAAKPAAKPAAKHVAKPAAAKPAAKPAANAAAKPAA---KPAA 289
Query: 971 LPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPN 843
P+A A+ TA + +AATPS + +++A A +G N
Sbjct: 290 KPVAAKPAAAKPATAPAANAAATPSATAAASSAASATPAAGSN 332
>gi|602878|emb|CAA58234| (X83232) flagellin [Legionella pneumophila]
Length = 475
Score = 37.9 bits (86), Expect = 0.75
Identities = 75/301 (24%), Positives = 116/301 (37%), Gaps = 4/301 (1%)
Frame = +1
Query: 901 GVAADLLSLAVMAHDANAAYASGNIEGSRQIVQDWTSAYLGGLMGGLAEAKAVGLLLTPV 1080
G AA +++A+ A + +S N G+ QD TSAY A+A A+
Sbjct: 182 GAAATDITIAIGGGAATSINSSANFTGALN-GQDATSAY--------AKAAAIN------ 226
Query: 1081 YLDGPIGAAVASVLTVAAGVEGTFLGSHYIGAFLDKVFDQLHHIGELSGARLYDWVTQIG 1260
D IG L+V A GT +GA IG +G Y+
Sbjct: 227 --DAGIGG-----LSVTASTSGT----QAVGA-----------IGGTAGDT-YNLTINGV 263
Query: 1261 DLFRRLNQTLHTDNASLLDLLHDLFRNSRDERDPLVLDLDGDGIETVAA-GKNILFDHDG 1437
++ L+ N+ L D + N + +V L+G + AA G+NI G
Sbjct: 264 AIYTNLDVATALTNSDLRDAI-----NGVSNQTGVVASLNGGNMTLTAADGRNITVTESG 318
Query: 1438 DGITHASGWVKSDDGLLVLDRNGNGRIDNGSELFGADTVLANGHKATSGFEALRDLDSNG 1617
G T + DGL V +GR+ + DT+ G A G A D+ G
Sbjct: 319 TGFTAGT------DGLTVTGGAFDGRLRGTLSISAVDTIAIGGTVANIGLSANISKDTVG 372
Query: 1618 -DGL-FNAADARFTDV-RVWRDLNQDGHSQANELFTLSNLGIASITLTPTDTQRVNLGNG 1788
D L + R T + R+ LN ++AN + L N ++I + ++
Sbjct: 373 IDSLDVSTGSGRQTAIKRIDAALNSVNSNRAN-MGALQNRFESTIANLENVSDNLSAARS 431
Query: 1789 NVMDA 1803
+ DA
Sbjct: 432 RIQDA 436
>gi|77658|pir||JQ0148 hypothetical 34.4K protein - Pseudomonas
aeruginosa
Length = 351
Score = 37.9 bits (86), Expect = 0.75
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = -2
Query: 1136 PAATVNTEATAAPIGPSRYTGVNSSPTAL-----ASAKPPIKPPRYALVQSCTICRLPSI 972
PAA + A P + + P A A+AKP KP A + P+
Sbjct: 244 PAAKPVAKPAAKPAAKTAAAKPAAKPAAKHVAKPAAAKPAAKPAANAAAKPAA---KPAA 300
Query: 971 LPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPN 843
P+A A+ TA + +AATPS P+ +++A A +G N
Sbjct: 301 KPVAAKPAAAKPATAPAANAAATPSAPAAASSAASATPAAGSN 343
Score = 37.5 bits (85), Expect = 0.98
Identities = 43/176 (24%), Positives = 66/176 (37%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPS 975
K V + AA + A P + + P A +AKP KP A + P+
Sbjct: 163 KTVAANAAAKPAAKPAAKPAAKTAAAKPAAKPAAKPAAKPAAKPA--AKTAAAKPAAKPA 220
Query: 974 ILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRR 795
P+A A + A TA+ ++ AA P+ +A+ AA + + +
Sbjct: 221 AKPVAKPAANAAAKTAA-AKPAAKPAAKPVAKPAAKPAAKTAAAKPAAK------PAAKH 273
Query: 794 APSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSA 627
+K A A A PA+ +KPV+AK P N+ PSA
Sbjct: 274 VAKPAAAKPAAKPAANAAAKPAAKPA---AKPVAAKPAAAKPATAPAANAAATPSA 326
Score = 34.8 bits (78), Expect = 6.5
Identities = 38/155 (24%), Positives = 58/155 (36%), Gaps = 2/155 (1%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTI--CRL 981
K + PAA + A P + P A +AKP KP A ++
Sbjct: 184 KTAAAKPAAKPAAKPAAKPAAKPAAKTAAAKPAAKPAAKPVAKPAANAAAKTAAAKPAAK 243
Query: 980 PSILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCT 801
P+ P+A A A TA+ +A + + A+A+ AA N +
Sbjct: 244 PAAKPVAKPAAKPAAKTAAAKPAAKPAAKHVAKPAAAKPAAKPAAN-------AAAKPAA 296
Query: 800 RRAPSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSA 690
+ A +K A A A PA+ + PS P +A
Sbjct: 297 KPAAKPVAAKPAAAKPATA---PAANAAATPSAPAAA 330
>gi|6320628|ref|NP_010708.1|HKR1| Type 1 membrane protein with EF hand
motif; Hkr1p >gi|2131284|pir||S69703 HKR1 protein
precursor - yeast (Saccharomyces cerevisiae) >gi|927691
(U33007) Hkr1p; YDR420W; CAI: 0.10 [Saccharomyces
cerevisiae]
Length = 1802
Score = 37.9 bits (86), Expect = 0.75
Identities = 76/292 (26%), Positives = 118/292 (40%), Gaps = 6/292 (2%)
Frame = -2
Query: 1262 SPI*VTQSYNLAPDSSPIWCSWSNTLSRKAPM*WLPK--NVPSTPAATVNTEATAAPIGP 1089
+P+ V+ +Y +P S+P S + T S AP+ + PS PAA +++ T++P P
Sbjct: 510 APVAVSSTYTSSP-SAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAA-ISSTYTSSPSAP 567
Query: 1088 ----SRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPSILPLAYAALASCAITASD 921
S YT S+P A++S P + S T PS A AA++S T+S
Sbjct: 568 VAVSSTYTSSPSAPVAISSTY--TSSPSVPVAVSSTYTSSPS----APAAISS-TYTSSP 620
Query: 920 SRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRRAPSR*VSKRAGMYRARAP 741
S A S T + SA AA S Y S S S S + AP
Sbjct: 621 SAPVAVSS-TYTSSPSAPAAISST--------YTSSPSVPVAVSSTYTSSPS------AP 665
Query: 740 *SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSALMATFK*PERCSDCAEIAWKDP 561
+ +ST PS PV+ + S P S S+ A P S + P
Sbjct: 666 AAISSTYTSSPSVPVAVSSTYTSSPSAPAAISSTYTSSPSA----PVAVSSTYTSSPSAP 721
Query: 560 ATPKRRKSAIGNPSTEVILGLFNKRGSSV*LNTPFTEAPPVRVRTSPTVSFTKRAEIV 387
A ++ + V + + +++ +T +P V S T + + A +V
Sbjct: 722 AAISSTYTSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSALVV 779
>gi|113633|sp|P15276|ALGP_PSEAE TRANSCRIPTIONAL REGULATORY PROTEIN
ALGP (ALGINATE REGULATORY PROTEIN ALGR3) >gi|151046
(M30145) alginate regulatory protein AlgR3 [Pseudomonas
aeruginosa]
Length = 340
Score = 37.9 bits (86), Expect = 0.75
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = -2
Query: 1136 PAATVNTEATAAPIGPSRYTGVNSSPTAL-----ASAKPPIKPPRYALVQSCTICRLPSI 972
PAA + A P + + P A A+AKP KP A + P+
Sbjct: 233 PAAKPVAKPAAKPAAKTAAAKPAAKPAAKHVAKPAAAKPAAKPAANAAAKPAA---KPAA 289
Query: 971 LPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPN 843
P+A A+ TA + +AATPS P+ +++A A +G N
Sbjct: 290 KPVAAKPAAAKPATAPAANAAATPSAPAAASSAASATPAAGSN 332
Score = 37.5 bits (85), Expect = 0.98
Identities = 43/176 (24%), Positives = 66/176 (37%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPS 975
K V + AA + A P + + P A +AKP KP A + P+
Sbjct: 152 KTVAANAAAKPAAKPAAKPAAKTAAAKPAAKPAAKPAAKPAAKPA--AKTAAAKPAAKPA 209
Query: 974 ILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRR 795
P+A A + A TA+ ++ AA P+ +A+ AA + + +
Sbjct: 210 AKPVAKPAANAAAKTAA-AKPAAKPAAKPVAKPAAKPAAKTAAAKPAAK------PAAKH 262
Query: 794 APSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSA 627
+K A A A PA+ +KPV+AK P N+ PSA
Sbjct: 263 VAKPAAAKPAAKPAANAAAKPAAKPA---AKPVAAKPAAAKPATAPAANAAATPSA 315
Score = 34.8 bits (78), Expect = 6.5
Identities = 38/155 (24%), Positives = 58/155 (36%), Gaps = 2/155 (1%)
Frame = -2
Query: 1154 KNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTI--CRL 981
K + PAA + A P + P A +AKP KP A ++
Sbjct: 173 KTAAAKPAAKPAAKPAAKPAAKPAAKTAAAKPAAKPAAKPVAKPAANAAAKTAAAKPAAK 232
Query: 980 PSILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCT 801
P+ P+A A A TA+ +A + + A+A+ AA N +
Sbjct: 233 PAAKPVAKPAAKPAAKTAAAKPAAKPAAKHVAKPAAAKPAAKPAAN-------AAAKPAA 285
Query: 800 RRAPSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSA 690
+ A +K A A A PA+ + PS P +A
Sbjct: 286 KPAAKPVAAKPAAAKPATA---PAANAAATPSAPAAA 319
>gi|2564958 (AF030001) tenascin X [Mus musculus]
Length = 4006
Score = 37.5 bits (85), Expect = 0.98
Identities = 33/102 (32%), Positives = 39/102 (37%), Gaps = 10/102 (9%)
Frame = -3
Query: 4366 CHCRGCPAW*GPCCS---------RSPESRACRRQTRSV-QCRRYGCGCHWKSTSPSNGC 4217
C C P W GP CS SP S++C +C R C C + PS C
Sbjct: 143 CACSCEPGWGGPTCSDPTDTKTPTSSPPSKSCPEDCNDQGRCVRGRCVCFPGYSGPS--C 200
Query: 4216 CRGRCPGPAPHLALRVVTGHQRQESPHQTPACQYRPAQ*SCRGRLLC*IGMC 4061
CPG R V G + P C R +C R C G C
Sbjct: 201 SWPSCPGDCQGRG-RCVKGVCVCRAGFSGPDCSQRSCPRNCNQRGRCEEGRC 251
>gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans]
Length = 961
Score = 37.5 bits (85), Expect = 0.98
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 5/161 (3%)
Frame = -2
Query: 1202 SWSNTLSRKAPM*WLPKNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKP 1023
S ++T S P P PST +++ T +P + S ++L S P+
Sbjct: 392 STTSTTSTTTPT---PSPSPSTASSSTTETVTPSPKPSPSESSTTSETSSLPSTSTPVVS 448
Query: 1022 PRYALVQSCTICRLPSILPLAYAALASCAITASDSRSAATPSLPSTRNASARA-----AA 858
+ ++ T P + + +S ++S S + TPS STR S + +
Sbjct: 449 ETPSETKTPTSSSAPPLSSSSPVGGSSSTASSSTSTPSETPSASSTRAVSETSTHISTST 508
Query: 857 DSGPNNCVVR*YLSLMSCTRRAPSR*VSKRAGMYRARAP*SPASTS 720
SGP + S+ + + PS +S + + P P ++S
Sbjct: 509 SSGPETSLTGSSTSVPATSSSVPSSAISPSSTPVISETPRPPVTSS 554
>gi|2950243|emb|CAB10894| (Z98204) extensin [Hordeum vulgare]
Length = 330
Score = 37.5 bits (85), Expect = 0.98
Identities = 36/129 (27%), Positives = 45/129 (33%)
Frame = -3
Query: 1078 PESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQPHR 899
P A +P PP P+ P PAQ P ++ P P+PPA P
Sbjct: 205 PSPPAPKPTPPPYKPPTPTP------PAQKPPTPTPPAYKPP----TPTPPAHKPPTPTP 254
Query: 898 VCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPPA 719
PAT + P PT + T P P +PP P A P L H P
Sbjct: 255 PAHKPATPTPPAHKPPTPTPPAHKPT---TPTPAYKPPTPTPPADK--PPTPTPLAHKPP 309
Query: 718 AACLPSRSA 692
P+ A
Sbjct: 310 TPTPPAYKA 318
Score = 36.7 bits (83), Expect = 1.7
Identities = 54/227 (23%), Positives = 79/227 (34%), Gaps = 8/227 (3%)
Frame = -3
Query: 1090 HPDIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADR 911
H P + A P + PP + P + P A P+ P +H P P +
Sbjct: 41 HAKPPVGSQAPPTYSPPTAKPTPPAPKPAPPTY-APIPKPPKPSPPAYHPTPKPAPPTYK 99
Query: 910 QPHRVCPAPATHQHVPQ-QTPAPTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNL 734
P + P+P ++ P+ PA A PAP PP P+ + P +
Sbjct: 100 PPTQPKPSPPAYKPAPKVSPPAYKPAPKVSPPAYKPAPKVSPPAYKPAPK-VSPPAYKPS 158
Query: 733 P--HPPAAACLPSRSAQSIAGCLNVAPHRVIXXXXXXXXXXPLNSQRDALIVLKSPGRTP 560
P PPA P S + V+P + +P TP
Sbjct: 159 PKVSPPAYKPAPKVSPPAYKPAPKVSPPAYKPAPKVSPPAYKPVPKPSP----PAPKPTP 214
Query: 559 PP-----PSAANQR*ATHPPR*YWGCSTSAAVRFD*TPHSPRHRRSGCAPHPPCH 410
PP P+ Q+ T P Y + + TP P H+ + P PP H
Sbjct: 215 PPYKPPTPTPPAQKPPTPTPPAYKPPTPTPPAHKPPTPTPPAHKPA--TPTPPAH 267
>gi|6459930|gb|AAF11681.1|AE002048_1 (AE002048) conserved hypothetical
protein [Deinococcus radiodurans]
Length = 528
Score = 37.5 bits (85), Expect = 0.98
Identities = 43/98 (43%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +2
Query: 1988 CRLPYWRRCRRCSLAPPRAHCARR*IR*S-RCGPAPQPCAAA--RNPWKPPERATA-RCI 2155
CRL RRCRR A R A R S RCGP+ C AA R+P P RA A R
Sbjct: 393 CRLSAPRRCRR---ATKRCRTATGCGRTSPRCGPSSGSCRAATRRSPRTSPRRARASRAS 449
Query: 2156 TTAWWSPEA*PPRAKRPFCPG*KS--STPG-LGRSLAFWKSSTAP 2281
+P A A P P K+ STPG RS A SS +P
Sbjct: 450 RPTIPAPAANSASAAPPNSPTRKTNWSTPGWCPRSAASTPSSRSP 494
>gi|2804289|dbj|BAA24436| (AB010266) tenascin-X [Mus musculus]
Length = 4114
Score = 37.5 bits (85), Expect = 0.98
Identities = 33/102 (32%), Positives = 39/102 (37%), Gaps = 10/102 (9%)
Frame = -3
Query: 4366 CHCRGCPAW*GPCCS---------RSPESRACRRQTRSV-QCRRYGCGCHWKSTSPSNGC 4217
C C P W GP CS SP S++C +C R C C + PS C
Sbjct: 143 CACSCEPGWGGPTCSDPTDTKTPTSSPPSKSCPEDCNDQGRCVRGRCVCFPGYSGPS--C 200
Query: 4216 CRGRCPGPAPHLALRVVTGHQRQESPHQTPACQYRPAQ*SCRGRLLC*IGMC 4061
CPG R V G + P C R +C R C G C
Sbjct: 201 SWPSCPGDCQGRG-RCVKGVCVCRAGFSGPDCSQRSCPRNCNQRGRCEEGRC 251
>gi|2642493 (AF023910) DNA topoisomerase I [Physarum polycephalum]
Length = 1015
Score = 37.1 bits (84), Expect = 1.3
Identities = 29/114 (25%), Positives = 44/114 (38%)
Frame = -2
Query: 1190 TLSRKAPM*WLPKNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYA 1011
T S+ A P S PA+T A A P P++ P A A+ KP P +
Sbjct: 68 TTSKPAATTPKPAATTSKPASTTPKPAAAIPKSPAKPAATTPKPAAAATGKPAASP---S 124
Query: 1010 LVQSCTICRLPSILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSG 849
+ P+ P A A A TA + + P+ + + AS+ +G
Sbjct: 125 TAKPAATTSKPAASPAKPAGTAKPAGTAKPAATTPKPAAGAAKPASSTPKPAAG 178
>gi|5420389|emb|CAB46680.1| (AJ243460) proteophosphoglycan [Leishmania
major]
Length = 383
Score = 37.1 bits (84), Expect = 1.3
Identities = 38/175 (21%), Positives = 70/175 (39%)
Frame = -2
Query: 1151 NVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPSI 972
+ PS+ ++ + +++AP S +SS +S+ P A S + S
Sbjct: 2 SAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASS 61
Query: 971 LPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRRA 792
++ +S +S S +++ S PS ++SA +++ S P+ S S +
Sbjct: 62 SSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSAS 121
Query: 791 PSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSA 627
S S + A + +P+S+S PS S P +S PSA
Sbjct: 122 SSSAPSSSSSAPSASSSSAPSSSSSSAPS---------ASSSSAPSSSSSSAPSA 167
>gi|1170299|sp|P41809|HKR1_YEAST HANSENULA MRAKII KILLER
TOXIN-RESISTANT PROTEIN 1 PRECURSOR >gi|545660|bbs|144411
(S69101) Hkr1p [Saccharomyces cerevisiae, YNN295,
Peptide, 1802 aa] [Saccharomyces cerevisiae]
Length = 1802
Score = 37.1 bits (84), Expect = 1.3
Identities = 66/215 (30%), Positives = 94/215 (43%), Gaps = 9/215 (4%)
Frame = -2
Query: 1262 SPI*VTQSYNLAPDSSPIWCSWSNTLSRKAPM*WLPK--NVPSTPAATVNTEATAAPIGP 1089
+P+ V+ +Y +P S+P S + T S AP+ + PS PAA +++ T++P P
Sbjct: 566 APVAVSSTYTSSP-SAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAA-ISSTYTSSPSAP 623
Query: 1088 ----SRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPSILPLAYAALASCAITASD 921
S YT S+P A++S P + S T PS A AA++S T+S
Sbjct: 624 VAVSSTYTSSPSAPAAISSTY--TSSPSVPVAVSSTYTSSPS----APAAISS-TYTSSP 676
Query: 920 SRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRRAPSR*VSKRAGMYRARAP 741
S A S T + SA AA S Y S S S S + AP
Sbjct: 677 SVPVAVSS-TYTSSPSAPAAISST--------YTSSPSAPVAVSSTYTSSPS------AP 721
Query: 740 *SPASTSGGLPSKPVSAKYCWLSKRGTPPGNS---MMEPSALMA 618
+ +ST PS PV+ + S P S PSA +A
Sbjct: 722 AAISSTYTSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVA 765
Score = 34.8 bits (78), Expect = 6.5
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Frame = -2
Query: 1259 PI*VTQSYNLAPDSSPIWCS-WSNTLSRKAPM*WLPKNVPSTPAATVNTEATAAPIGP-- 1089
P+ V+ +Y +P +S + S ++++ S + + PS PAA +++ T++P P
Sbjct: 455 PVAVSSTYTSSPSASVVVPSAYASSPSVPVAVSSTYTSSPSAPAA-ISSTYTSSPSAPVA 513
Query: 1088 --SRYTGVNSSPTALASAKPPIKPPRYALVQSCTIC-RLPSILPLAYAALASCAITASDS 918
S YT S+P A++S A+ + T P+ + Y + S + S S
Sbjct: 514 VSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVS-S 572
Query: 917 RSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRRAPSR*VSKRAGMYRARAP* 738
++PS P+ +S ++ S P V Y S S S S + AP
Sbjct: 573 TYTSSPSAPAA-ISSTYTSSPSAP-VAVSSTYTSSPSAPAAISSTYTSSPS------APV 624
Query: 737 SPASTSGGLPSKPVSAKYCWLSKRGTPPG------NSMMEPSALMATF 612
+ +ST PS P + + S P +S P+A+ +T+
Sbjct: 625 AVSSTYTSSPSAPAAISSTYTSSPSVPVAVSSTYTSSPSAPAAISSTY 672
>gi|5123653|emb|CAB45342.1| (AL079345) putative membrane protein
[Streptomyces coelicolor A3(2)]
Length = 464
Score = 37.1 bits (84), Expect = 1.3
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Frame = -3
Query: 889 APATHQHVPQQTPAPTTAWYADTCL*CPAP---GARP-PGECPSARGCIGPGRRNLPHPP 722
AP+ VP TP P T A + P P A P PG P AR GP RR +P
Sbjct: 114 APSAAPPVPDTTPVPATPVPAAPVMATPVPVTPDATPAPGSVPPARDASGPARRRVPR-- 171
Query: 721 AAACLPSRSAQSIAGCLNVAPHRVIX-XXXXXXXXXPLNSQRDALI--VLKSPGRTPPPP 551
AA + +++ + + + V +Q A + PG T P P
Sbjct: 172 -AALYAATGVVAVSAAVALVANLVASPDDDGRHGPAGAVAQTSASVSGTATGPGSTSPGP 230
Query: 550 SAA 542
SA+
Sbjct: 231 SAS 233
>gi|2981221 (AF053091) eyelid [Drosophila melanogaster]
Length = 2715
Score = 37.1 bits (84), Expect = 1.3
Identities = 63/253 (24%), Positives = 92/253 (35%), Gaps = 33/253 (13%)
Frame = -3
Query: 1090 HP-DIPESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATAD 914
HP P + P PP P++ H + Q P H + H P+PP
Sbjct: 66 HPYGAPPPPGSGPGGPPGPDPAAVMHYHHLHQQQQQHPPPP-HMQQQQHHGGPAPPPPGG 124
Query: 913 RQPHRVCPAPATHQ---HVPQQTPAPTTAWY-ADTCL*C-----PAPGARPPGEC---PS 770
H AP + H+P P P Y AD + P PG +PP + P
Sbjct: 125 APEH----APGVKEEYTHLPPPHPHPAYGRYHADPNMDPYRYGQPLPGGKPPQQQQPHPQ 180
Query: 769 ARGCIGPGRRNLPH-PPAAACLPSRSAQSIAGCLNVA----------PHRVIXXX----X 635
+ PG P+ PP +P + Q LN HR
Sbjct: 181 QQPPQQPGPGGSPNRPPQQRYIPGQPPQGPTPTLNSLLQSSNPPPPPQHRYANTYDPQQA 240
Query: 634 XXXXXXPLNSQRDALIVLKSPGRTPPPPSA-----ANQR*ATHPPR*YWGCSTSAAVRFD 470
+Q+ PG PPPP Q+ PP + + ++
Sbjct: 241 AASAAAAAAAQQQQAGGPPPPGHGPPPPQHQPSPYGGQQGGWAPPPRPYSPQLGPSQQYR 300
Query: 469 *TPHSPRHRRSGCAPHPPCHSQSGRRSCPKPHSEDACHRTFFRQTG 332
P P + G +P+PP H Q+ P + + +Q G
Sbjct: 301 TPP--PTNTSRGQSPYPPAHGQNSGSYPSSPQQQQQQQQQQQQQAG 344
>gi|1944583|emb|CAB08095| (Z94121) hypothetical protein Rv3906c
[Mycobacterium tuberculosis]
Length = 169
Score = 37.1 bits (84), Expect = 1.3
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Frame = +1
Query: 1357 DPLVLDLDGDGIETVAAGKNILFDHDGDGIT-HASGWVKSD---DGLLVLDRNGNG--RI 1518
D + LDLDGDG+ A L D DGD + HA V +D + + D +G +
Sbjct: 30 DAIGLDLDGDGLRDDA-----LADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAV 84
Query: 1519 DNGSEL--FGADTVLANGHKAT--SGFEALRD--LDSNGDGL 1626
D G +L +G D V G GF L D LD++GDGL
Sbjct: 85 DRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGL 126
>gi|1213537 (U50193) coded for by C. elegans cDNA cm02b2;
alternatively spliced version of ZK328.5b; similar to
nucleoporin and DNA-directed RNA polymerase
[Caenorhabditis elegans]
Length = 1166
Score = 36.7 bits (83), Expect = 1.7
Identities = 30/86 (34%), Positives = 46/86 (52%), Gaps = 5/86 (5%)
Frame = +1
Query: 4510 LSGGTGDDTLYGSAFAD-TYLFNKGDGHDTIIEQG----GTDKLVFGAGLSRKEARFTRS 4674
L GGT DD+ S + T FN+ GHD+IIE+G KL A L + +RF R+
Sbjct: 492 LGGGTLDDSREESCIGNMTTEFNES-GHDSIIEEGQQPEKKPKLELLADLEYESSRFIRN 550
Query: 4675 GDDLSLLFNGSEDQVTVAGWFNGSGHQVESL 4767
+L ++ ++ A F+G GH + +
Sbjct: 551 LQELKVMPKANDP----AHRFHGGGHSAKMI 577
>gi|79833|pir||JQ0405 hypothetical 119.5K protein (uvrA region) -
Micrococcus luteus
Length = 1106
Score = 36.7 bits (83), Expect = 1.7
Identities = 34/101 (33%), Positives = 44/101 (42%), Gaps = 3/101 (2%)
Frame = +3
Query: 2031 HHPGHTARGVRSGDRAVGQHLNHAQQRGIPGSL---RRGPPHGVLPRLGGPRKRSLPGRS 2201
H PGHT R +R+G R + A R P R PP PR R+R+ G
Sbjct: 600 HPPGHTDR-LRAGRRPLRPR--RAVHRPAPAGQPPPHRDPPAPAGPRQHPHRRRARRGHD 656
Query: 2202 GRFALDKRAARPAWADHWHFGKVQRLPHGQRAKRPDQHGRADLR 2333
R LD R RP+ G+ LP G + + +H R LR
Sbjct: 657 RRGGLD-RGHRPSRGRVRRRGRALGLPGGSQGEHAVRHRRLPLR 699
>gi|1213538 (U50193) coded for by C. elegans cDNA yk6a12.3; coded for
by C. elegans cDNA yk1f6.3; coded for by C. elegans cDNA
yk20a9.3; coded for by C. elegans cDNA yk6b3.3; coded for
by C. elegans cDNA yk5f6.3; coded for by C. elegans cDNA
yk5f6.5; co...
Length = 1665
Score = 36.7 bits (83), Expect = 1.7
Identities = 30/86 (34%), Positives = 46/86 (52%), Gaps = 5/86 (5%)
Frame = +1
Query: 4510 LSGGTGDDTLYGSAFAD-TYLFNKGDGHDTIIEQG----GTDKLVFGAGLSRKEARFTRS 4674
L GGT DD+ S + T FN+ GHD+IIE+G KL A L + +RF R+
Sbjct: 991 LGGGTLDDSREESCIGNMTTEFNES-GHDSIIEEGQQPEKKPKLELLADLEYESSRFIRN 1049
Query: 4675 GDDLSLLFNGSEDQVTVAGWFNGSGHQVESL 4767
+L ++ ++ A F+G GH + +
Sbjct: 1050 LQELKVMPKANDP----AHRFHGGGHSAKMI 1076
>gi|77605|pir||A41463 alkaline metalloproteinase (EC 3.4.24.-)
precursor - Pseudomonas aeruginosa
Length = 476
Score = 36.4 bits (82), Expect = 2.2
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 3078
+N L+GGAGND+L GG G D L+G A ADT+++
Sbjct: 354 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 386
Score = 34.4 bits (77), Expect = 8.5
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 4074
+N L+GGAG+D+L GG G D L+G A ADT+++
Sbjct: 354 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 386
>gi|1616941|dbj|BAA13503| (D87921) alkaline proteinase [Pseudomonas
aeruginosa]
Length = 476
Score = 36.4 bits (82), Expect = 2.2
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 3078
+N L+GGAGND+L GG G D L+G A ADT+++
Sbjct: 354 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 386
Score = 34.4 bits (77), Expect = 8.5
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 4074
+N L+GGAG+D+L GG G D L+G A ADT+++
Sbjct: 354 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 386
>gi|1296845|emb|CAA66196| (X97581) spalt protein [Mus musculus]
Length = 1323
Score = 36.4 bits (82), Expect = 2.2
Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 6/280 (2%)
Frame = -2
Query: 1145 PSTPAATVNTEATAAPIGP---SRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPS 975
P+T +A + AA GP S+ S+P SA PP A C+ P
Sbjct: 245 PATASAGSGSTLPAAFDGPQHLSQPASGTSTPCCSTSAAPPDSGAHPA----CSTGPAPG 300
Query: 974 ILPLAYAALASCAITASDSRSAATPSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRR 795
A AA +S A ++A+TP P+ ++A + PN + +
Sbjct: 301 ----AVAAASSTVGNAVQPQNASTP--PALGPGPLLSSASNLPNPLLPQ----------- 343
Query: 794 APSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMMEPSALMAT 615
+ + + S A+T+ L K+ ++G PP S+ EP A
Sbjct: 344 ------TSSSSVIFPNPLVSIAATANALDPLSALMKH----RKGKPPNVSVFEPKASAED 393
Query: 614 FK*PERCSDCAEIAWKDPATPKRRKSAIGNP--STEVILGLFNKRGS-SV*LNTPFTEAP 444
+C CA++ D A +S G + F+ +G+ V + P
Sbjct: 394 PFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYP 453
Query: 443 PVRVRTSPTVSFTKRAEIVSQAPFGRRVPSNVLSPNRNWLEGLPHL 306
+++ P + + S P+G +P P WL+ P L
Sbjct: 454 HIQMNPYPVPEYLDKCPTCSGIPYGMSLPPE--KPVTTWLDSKPVL 497
>gi|6322209|ref|NP_012284.1|MUC1| cell surface flocculin with
structure similar to serine/threonine-rich GPI-anchored
cell wall proteins; Muc1p >gi|728850|sp|P08640|AMYH_YEAST
GLUCOAMYLASE S1/S2 PRECURSOR (GLUCAN
1,4-ALPHA-GLUCOSIDASE) (1,4-ALPHA-D-GLUCAN
GLUCOHYDROLASE) >gi|626156|pir||S48478 glucan
1,4-alpha-glucosidase (EC 3.2.1.3) - yeast (Saccharomyces
cerevisiae) >gi|557822|emb|CAA86176| (Z38061) mal5, sta1,
len: 1367, CAI: 0.3, AMYH_YEAST P08640 GLUCOAMYLASE S1
(EC 3.2.1.3) [Saccharomyces cerevisiae] >gi|1304387
(U30626) glucoamylase [Saccharomyces cerevisiae var.
diastaticus]
Length = 1367
Score = 36.4 bits (82), Expect = 2.2
Identities = 65/271 (23%), Positives = 110/271 (39%), Gaps = 12/271 (4%)
Frame = -2
Query: 1223 DSSPIWCSWSNTLSRKAPM*WLPKNVPSTPAATVNTEATAAPI-GPSRYTGVNSS----P 1059
+SS + S T S AP+ S P + TE+++AP+ PS T +SS
Sbjct: 416 ESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTS 475
Query: 1058 TALASAKPPIKPPRYALVQSCTICRLPSILPLAYAALASCAITASDSRSAATPSLPSTRN 879
+ S+ P+ P + +S + S + A + + + + ++S SA P+ S+
Sbjct: 476 STTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTT 535
Query: 878 ASARAAADSGPNNCVVR*YLSLMSCTRRAPSR*VSKRAGMYRARAP*SPASTSGGLPSKP 699
S+ A S + S T + S V+ + +P+S++ S P
Sbjct: 536 ESSSAPVTSSTTESSSAPVPTPSSSTTESSSTPVTSSTTESSSAPVPTPSSSTTESSSAP 595
Query: 698 V---SAKYCWLSKRGTP-PGNSMMEPSALMATFK*PERCSDCAEIAWKDPATPKRRKSAI 531
V S+ S P P +S E S+ T E S A + +T + + +
Sbjct: 596 VPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTE--SSSAPVPTPSSSTTESSSAPV 653
Query: 530 GNPSTEVILGLFNKRGSSV*LNTP---FTEAPPVRVRTSPTVS 411
PS+ SS + TP TE+ V +S T S
Sbjct: 654 PTPSSS------TTESSSAPVPTPSSSTTESSSAPVTSSTTES 690
Score = 35.2 bits (79), Expect = 5.0
Identities = 34/126 (26%), Positives = 54/126 (41%), Gaps = 1/126 (0%)
Frame = -2
Query: 1247 TQSYNLAPDSSPIWCSWSNTLSRKAPM*WLPKNVPSTPAATVNTEATAAPI-GPSRYTGV 1071
T + AP +P S S T S AP+ S P + TE+++AP+ PS T
Sbjct: 348 TTESSSAPVPTP---SSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTE 404
Query: 1070 NSSPTALASAKPPIKPPRYALVQSCTICRLPSILPLAYAALASCAITASDSRSAATPSLP 891
+SS +S P + + + S + +A + + T S S TPS
Sbjct: 405 SSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSS 464
Query: 890 STRNASA 870
+T ++SA
Sbjct: 465 TTESSSA 471
>gi|5917666|gb|AAD55980.1|AF159297_1 (AF159297) extensin-like protein
[Zea mays]
Length = 1315
Score = 36.4 bits (82), Expect = 2.2
Identities = 50/181 (27%), Positives = 62/181 (33%), Gaps = 7/181 (3%)
Frame = -3
Query: 1057 PLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQPHRVCPAPAT 878
P PP + P + PA A P TPH SP + P PAPA
Sbjct: 414 PGGPPSSSVPGKPPSVPGKPAAPAPMP------TPHTPPDVSPEPLPEPSP---VPAPA- 463
Query: 877 HQHVPQQTP---APTTAWYADTCL*CPAPGARPPGECPSARGCIGPGRRNLP----HPPA 719
P + P +P Y T P P PPG P P R P PPA
Sbjct: 464 ----PMRMPTLRSPPADEYIPTP---PVPAKSPPGTSP-------PASRGAPPLQAQPPA 509
Query: 718 AACLPSRSAQSIAGCLNVAPHRVIXXXXXXXXXXPLNSQRDALIVLKSPGRTPPPPSAAN 539
A+ P+ +S S A +VL P +TP PP+
Sbjct: 510 ASSPPATPVKS--------------------------SPPPAAVVLPPPAKTPSPPAPV- 542
Query: 538 QR*ATHPP 515
A+ PP
Sbjct: 543 ---ASPPP 547
>gi|1421342|pdb|1AKL| Alkaline Protease From Pseudomonas Aeruginosa
Ifo3080
Length = 470
Score = 36.4 bits (82), Expect = 2.2
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 3078
+N L+GGAGND+L GG G D L+G A ADT+++
Sbjct: 346 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 378
Score = 36.0 bits (81), Expect = 2.9
Identities = 31/104 (29%), Positives = 50/104 (47%), Gaps = 14/104 (13%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLF-----NKGDGHDTI-- 4599
+N L+GGAG+D+L GG G D L+G A ADT+++ + DT+
Sbjct: 346 ANVLKGGAGNDILY-----------GGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRD 394
Query: 4600 -------IEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGH 4752
I+ G D V G + + F L ++ + ++A F+G H
Sbjct: 395 FVSGQDKIDLSGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAH 452
Score = 34.4 bits (77), Expect = 8.5
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 4074
+N L+GGAG+D+L GG G D L+G A ADT+++
Sbjct: 346 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 378
>gi|416632|sp|Q03023|APRA_PSEAE ALKALINE METALLOPROTEINASE PRECURSOR
(AP) >gi|281506|pir||S26699 alkaline proteinase -
Pseudomonas aeruginosa >gi|1311334|pdb|1KAP|P Pseudomonas
aeruginosa >gi|45283|emb|CAA45858| (X64558) alkaline
protease [Pseudomonas aeruginosa]
Length = 479
Score = 36.4 bits (82), Expect = 2.2
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 3078
+N L+GGAGND+L GG G D L+G A ADT+++
Sbjct: 355 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 387
Score = 36.0 bits (81), Expect = 2.9
Identities = 31/104 (29%), Positives = 50/104 (47%), Gaps = 14/104 (13%)
Frame = +1
Query: 4441 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLF-----NKGDGHDTI-- 4599
+N L+GGAG+D+L GG G D L+G A ADT+++ + DT+
Sbjct: 355 ANVLKGGAGNDILY-----------GGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRD 403
Query: 4600 -------IEQGGTDKLVFGAGLSRKEARFTRSGDDLSLLFNGSEDQVTVAGWFNGSGH 4752
I+ G D V G + + F L ++ + ++A F+G H
Sbjct: 404 FVSGQDKIDLSGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAH 461
Score = 34.4 bits (77), Expect = 8.5
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLF 4074
+N L+GGAG+D+L GG G D L+G A ADT+++
Sbjct: 355 ANVLKGGAGNDIL-----------YGGLGADQLWGGAGADTFVY 387
>gi|485464|pir||S29309 hypothetical protein 4 (phaC2 3' region) -
Pseudomonas aeruginosa (fragment)
Length = 217
Score = 36.0 bits (81), Expect = 2.9
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 8/178 (4%)
Frame = -2
Query: 1085 RYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLPSILPLAYAALASCAITASDSRSAA 906
+ TGV+ P A A+AKP KP A + T P+ P A AA A A+ +A
Sbjct: 40 KLTGVSVKPAAKAAAKPAAKPA--AKPAAKTAAAKPAAKPAAKAAAKPAAKPAAKKTAAK 97
Query: 905 T----PSLPSTRNASARAAADSGPNNCVVR*YLSLMSCTRRAPSR*VSKRAGMYRARAP* 738
T P+ +A+AAA + + A ++ +K A A
Sbjct: 98 TAAAKPAAKPAAKPTAKAAAKPATKPAA---KAAAKPAAKPAAAKPAAKPAAKPAAATAA 154
Query: 737 SPASTSGGLPS--KPVSAKYCWLSKRGTP--PGNSMMEPSALMATFK*PERCSDCAEIAW 570
PA+ P+ KP + K P P S P+A AT P + A
Sbjct: 155 KPAAKPAAKPAAKKPAAKKPAAKPAAAKPAAPAASSSAPAAPAAT---PAASAPAANA-- 209
Query: 569 KDPATP 552
PATP
Sbjct: 210 --PATP 213
>gi|6580770|gb|AAF18276.1| (AF088897) pyruvate formate lyase
activating enzyme [Zymomonas mobilis]
Length = 270
Score = 36.0 bits (81), Expect = 2.9
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 18/84 (21%)
Frame = +1
Query: 2380 YLALPPRQLSATFDAFAEAYAKLKESIYIRLVLEPRLTDYLSGL-RLTD----------- 2523
Y AL +L T AFA+ A LK+ +++R VL P LTD + + L D
Sbjct: 164 YKALTGVELQPTL-AFAKRLAALKKPVWLRYVLVPGLTDNFNEIANLADFAATLGNIERV 222
Query: 2524 ------NNGVMAWDASGLEAKLDQTWQHNKAQALQDVMDLYR 2631
G W ASGL KL T Q ++DV ++R
Sbjct: 223 DVLPFHKMGEYKWKASGLAYKLGDT-QPPSPALVEDVRGIFR 263
>gi|5823131|gb|AAD53049.1|AF127245_1 (AF127245) Smcx [Mus musculus]
Length = 1551
Score = 36.0 bits (81), Expect = 2.9
Identities = 26/110 (23%), Positives = 47/110 (42%)
Frame = +1
Query: 7 LTAEQANALLGSITTQEQLRDLINQLDIHSSGSITVLYSGDTANGVSNSQILQGMLHNGD 186
L +E+ ALLG +L +L +L S ++ Y D G N +QG+L NGD
Sbjct: 1296 LASEEVTALLG------RLAELRQRLQAESKPEESLAYPSDGGEGTGNMPKVQGLLENGD 1349
Query: 187 DIRVIDTTEAAKFLNVDPKDPNSNTALYQKLQQIIGDRPDRWGSPSNQFL 336
+ T K + D +++ +L + + P+ +P + +
Sbjct: 1350 SV-----TSPEKVATEEGSDLELLSSILPQLSGPVLELPEATRAPLEELM 1394
>gi|731160|sp|P41228|X169_CRIGR XE169 PROTEIN
>gi|2137060|pir||I48129 Xe169 (escapes X-inactivation)
protein - hamster (fragment) >gi|535461 (L29564)
homologous to gene in mice and humans [Cricetulus sp.]
Length = 180
Score = 36.0 bits (81), Expect = 2.9
Identities = 20/62 (32%), Positives = 31/62 (49%)
Frame = +1
Query: 7 LTAEQANALLGSITTQEQLRDLINQLDIHSSGSITVLYSGDTANGVSNSQILQGMLHNGD 186
L +E+ ALLG +L +L +L S ++ YS D G + +QG+L NGD
Sbjct: 91 LASEEVTALLG------RLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKVQGLLENGD 144
Query: 187 DI 192
+
Sbjct: 145 SV 146
>gi|6681229|ref|NP_031907.1|| dentatorubral pallidoluysian atrophy
>gi|1549217|dbj|BAA13450| (D87744) DRPLA protein [Mus
musculus]
Length = 1175
Score = 36.0 bits (81), Expect = 2.9
Identities = 67/239 (28%), Positives = 89/239 (37%), Gaps = 56/239 (23%)
Frame = -3
Query: 1090 HPDIPESTAAQPL---------WPPPNHPSSHPDTHWSN-----------------PAQS 989
HP +P + P+ PPP P +HP + N A S
Sbjct: 186 HPSVPPTGYHAPMEPPTSRLFQGPPPGAPPTHPQLYPGNASGGVLSGPPMGPKGGAAASS 245
Query: 988 AGCPRYCHWRTPHWHRAP--------SPPATADRQP-----HRVCPAPATHQHV-PQQTP 851
G P P P +PPA P P PA+ HV P P
Sbjct: 246 VGAPSGGKQHPPPTTPIPISSSGASGAPPAKPPSAPVGGGSLPSAPPPASFPHVTPNLPP 305
Query: 850 APTTAWYADTCL*CPAPGARP-PGECPSARGCIGPGRRNLPHPPAAACLPSRSAQSIAGC 674
P + P GA+P PG PS +G G LP P + S +
Sbjct: 306 PPALRPLNNASASPPGMGAQPIPGHLPSPH-AMGQGMSGLPPGPEKGPTLAPSPHPLPPA 364
Query: 673 LNVAPHRVI---------XXXXXXXXXXPLNSQRDALIVLKSPGRTPPPPSAANQR*ATH 521
+ AP + SQ A L S + PPP++ + +
Sbjct: 365 SSSAPGPPMRYPYSSSSSSAAASSSSSSSSASQYPASQALPSYPHSFPPPTSMSV--SNQ 422
Query: 520 PPR*YWGCSTSAAVRFD*TPHSPRHRR------SGCAPHPPCHSQSGRRSCPKPH 374
PP+ S AV P P + R + P PP QS H
Sbjct: 423 PPKYTQPSLPSQAVWSQGPPPPPPYGRLLGNNNTHPGPFPPTGGQSTAHPAAPTH 477
Score = 32.1 bits (71), Expect(2) = 8.2
Identities = 28/86 (32%), Positives = 34/86 (38%), Gaps = 6/86 (6%)
Frame = -3
Query: 946 HRAPSPPATADRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARP-PGECPS 770
H P PP H P HQ PQQ + P PGA P P E +
Sbjct: 457 HPGPFPPTGGQSTAHPAAPTHHHHQQQPQQQHHHGNSG-------APPPGAYPHPLESSN 509
Query: 769 ARGC----IGPGRRNL-PHPPAAACLPSRSAQ 689
+ + P +L P+PP AA LP Q
Sbjct: 510 SHHAHPYNMSPSLGSLRPYPPGAAHLPPPHGQ 541
Score = 20.8 bits (42), Expect(2) = 8.2
Identities = 12/43 (27%), Positives = 19/43 (43%)
Frame = -2
Query: 1148 VPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPP 1020
+PS P + + + P +YT + A+ S PP PP
Sbjct: 404 LPSYPHSFPPPTSMSVSNQPPKYTQPSLPSQAVWSQGPPPPPP 446
>gi|2289904 (AC002397) DRPLA [Mus musculus]
Length = 1175
Score = 36.0 bits (81), Expect = 2.9
Identities = 67/239 (28%), Positives = 89/239 (37%), Gaps = 56/239 (23%)
Frame = -3
Query: 1090 HPDIPESTAAQPL---------WPPPNHPSSHPDTHWSN-----------------PAQS 989
HP +P + P+ PPP P +HP + N A S
Sbjct: 186 HPSVPPTGYHAPMEPPTSRLFQGPPPGAPPTHPQLYPGNASGGVLSGPPMGPKGGAAASS 245
Query: 988 AGCPRYCHWRTPHWHRAP--------SPPATADRQP-----HRVCPAPATHQHV-PQQTP 851
G P P P +PPA P P PA+ HV P P
Sbjct: 246 VGAPSGGKQHPPPTTPIPISSSGASGAPPAKPPSAPVGGGSLPSAPPPASFPHVTPNLPP 305
Query: 850 APTTAWYADTCL*CPAPGARP-PGECPSARGCIGPGRRNLPHPPAAACLPSRSAQSIAGC 674
P + P GA+P PG PS +G G LP P + S +
Sbjct: 306 PPALRPLNNASASPPGMGAQPIPGHLPSPH-AMGQGMSGLPPGPEKGPTLAPSPHPLPPA 364
Query: 673 LNVAPHRVI---------XXXXXXXXXXPLNSQRDALIVLKSPGRTPPPPSAANQR*ATH 521
+ AP + SQ A L S + PPP++ + +
Sbjct: 365 SSSAPGPPMRYPYSSSSSSAAASSSSSSSSASQYPASQALPSYPHSFPPPTSMSV--SNQ 422
Query: 520 PPR*YWGCSTSAAVRFD*TPHSPRHRR------SGCAPHPPCHSQSGRRSCPKPH 374
PP+ S AV P P + R + P PP QS H
Sbjct: 423 PPKYTQPSLPSQAVWSQGPPPPPPYGRLLANNNTHPGPFPPTGGQSTAHPAAPTH 477
Score = 28.2 bits (61), Expect(2) = 3.9
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Frame = -3
Query: 1000 PAQSAGCPRYCHWRTPHWHRAPSPPA--------TADRQPHRVCPA-PATHQHVPQQTPA 848
P G P TP +R SPPA + P + PA P++ +P A
Sbjct: 640 PGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSSLSSLPPPPAA 699
Query: 847 PTTA--WYADTCL*CPAPGARPPGECPSARGCIGPGRRNLPHPPAAACLPSRSAQS 686
PTT A PA PP E P + P R P PP +PS ++QS
Sbjct: 700 PTTGPPLTATQIKQEPAEEYEPP-ESP-----VPPARSPSP-PPKVVDVPSHASQS 748
Score = 25.8 bits (55), Expect(2) = 3.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -2
Query: 1142 STPAATVNTEA----TAAPIGPSRYTGVNSSPTALASAKPP 1032
ST ATV + TA+P GP +Y+ SP + +A PP
Sbjct: 600 STVIATVASSPAGYKTASPPGPPQYSKRAPSPGSYKTATPP 640
>gi|6682831|dbj|BAA88899.1| (AB020964) complement component C7
[Paralichthys olivaceus]
Length = 805
Score = 35.6 bits (80), Expect = 3.8
Identities = 26/84 (30%), Positives = 33/84 (38%), Gaps = 14/84 (16%)
Frame = -3
Query: 4366 CHCRGCPAW*GPCCSRSPESRACRRQTRSVQCRR--------------YGCGCHWKSTSP 4229
CHCR C P S S CR T C+ + C W S S
Sbjct: 440 CHCRPCQNNGQPLLSGSVCRCVCRPGTSGPACQTGAVIGEQPGLIHGGWSCWSSWGSCSG 499
Query: 4228 SNGCCRGRCPGPAPHLALRVVTGHQRQESPHQTPACQY 4115
C PAP + TG + ++ P + P QY
Sbjct: 500 GRMSRTRSCNNPAPSRGGQHCTGLRAEQKPCEDPQIQY 537
>gi|3800851 (AF081671) VU91D calmodulin [synthetic construct]
Length = 149
Score = 35.6 bits (80), Expect = 3.8
Identities = 33/95 (34%), Positives = 48/95 (49%), Gaps = 25/95 (26%)
Frame = +1
Query: 1420 LFDHDGDGITHAS-------------GWVKSDDGLLVLDRNGNGRIDNGSELFGADTVLA 1560
LFD DGDG +S + +D + +D +GN +I+ L L
Sbjct: 19 LFDKDGDGTISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLK 78
Query: 1561 NGHKATSGFEALRDLDSNGDGLFNAAD---------ARFTDVRV---WRDLNQDGHSQAN 1704
+ EA + D NGDGL +AA+ + TD V R+ + DG Q N
Sbjct: 79 SNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMIREADVDGDGQVN 138
>gi|549135|sp|P35448|TSP1_XENLA THROMBOSPONDIN 1 PRECURSOR
Length = 1173
Score = 35.6 bits (80), Expect = 3.8
Identities = 22/79 (27%), Positives = 33/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 3361 RGCPAW*GPCCSRSPESRACRRQTRSVQCRRYGCGCHWKSTSPSNGCCRG-------RCP 3203
R C + PC S ++R+C+ Q + ++ G HW S + C C
Sbjct: 407 RSCDSLNNPCEGSSVQTRSCQIQDCDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCN 466
Query: 3202 GPAPHLALRVVTGHQRQESPHQTPAC 3125
P P L + G R+ P Q C
Sbjct: 467 SPVPQLNGKQCEGEGRENKPCQKDPC 492
Score = 35.6 bits (80), Expect = 3.8
Identities = 22/79 (27%), Positives = 33/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 4357 RGCPAW*GPCCSRSPESRACRRQTRSVQCRRYGCGCHWKSTSPSNGCCRG-------RCP 4199
R C + PC S ++R+C+ Q + ++ G HW S + C C
Sbjct: 407 RSCDSLNNPCEGSSVQTRSCQIQDCDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCN 466
Query: 4198 GPAPHLALRVVTGHQRQESPHQTPAC 4121
P P L + G R+ P Q C
Sbjct: 467 SPVPQLNGKQCEGEGRENKPCQKDPC 492
>gi|1722853|sp||X169_MOUSE_2 [Segment 2 of 2] XE169 PROTEIN (SMCX
PROTEIN) >gi|535684 (L29563) Xe169 [Mus musculus]
Length = 180
Score = 35.6 bits (80), Expect = 3.8
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 7 LTAEQANALLGSITTQEQLRDLINQLDIHSSGSITVLYSGDTANGVSNSQILQGMLHNGD 186
L +E+ ALLG +L +L +L S ++ Y D G N +QG+L NGD
Sbjct: 91 LASEEVTALLG------RLAELRQRLQAESKPEESLAYPSDGGEGTGNMPKVQGLLENGD 144
Query: 187 DI 192
+
Sbjct: 145 SV 146
>gi|1869859|emb|CAB06722.1| (Z86099) very large tegument protein
[human herpesvirus 2]
Length = 3122
Score = 35.6 bits (80), Expect = 3.8
Identities = 43/181 (23%), Positives = 62/181 (33%), Gaps = 16/181 (8%)
Frame = -3
Query: 1087 PDIPESTAAQPLWPPPNHPSSHPDTHWS-----NPAQSAGCPRYCHWRTPHWHRAPSPPA 923
P+ P + P P HP+ PD W+ P P PH P PA
Sbjct: 304 PEAPRGASGPPDTPQAGHPNRPPDDVWAAALEGTPPAKPSAPDAAASGPPHAAPPPQTPA 363
Query: 922 ------TADRQPHRVCPAPATHQHVPQQTPAP---TTAWYADTCL*CPAPGARPPGECPS 770
D + V P T P W + + G RP + P
Sbjct: 364 GDAAEEAEDLRVLEVGAVPVGRHRARYSTGLPKRRRPTWTPPSSVEDLTSGERPAPKAPP 423
Query: 769 ARGCIGPGRRNLP--HPPAAACLPSRSAQSIAGCLNVAPHRVIXXXXXXXXXXPLNSQRD 596
A+ +++ P P AA +P+ S IA + AP P +
Sbjct: 424 AKA----KKKSAPKKKAPVAAEVPASSPTPIAATVPPAPDTPPQSGQGGGDDGPASPSSP 479
Query: 595 ALIVLKSPGRTPPPPSA 545
+++ R P PP A
Sbjct: 480 SVLETLGARRPPEPPGA 496
>gi|3559957|emb|CAA20595.1| (AL031514) putative ATP/GTP binding
protein [Streptomyces coelicolor A3(2)]
Length = 606
Score = 35.2 bits (79), Expect = 5.0
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Frame = +1
Query: 2191 QGEAAVL--------PWIKEQHARLGPIIGILEKFNGSRMVSEQNGQISMVGRTFAWQRV 2346
QGE VL PW+ ++G G G++ V WQRV
Sbjct: 291 QGEPVVLDGVSTAYQPWVSSGGLQIG------RSLVGGAWGEHFRGRLDEVN---VWQRV 341
Query: 2347 VRPDGHSEEAMYL--ALPPRQLSATFDAFAEAYAKLKESIYIRLVLEPRLTDYLSGLRLT 2520
+ PD +++A L +P +L A +DA + +KE + P LT +G L
Sbjct: 342 LTPDEITQQAQLLEEGVPANELVAQWDAASSTGTTVKE---LSSYPAPSLTLSAAGAVLD 398
Query: 2521 DNNGVMAWDAS 2553
+ N + D S
Sbjct: 399 EENNALVLDGS 409
>gi|100935|pir||S21825 vicilin-like storage protein Glb1-S, embryo -
maize >gi|22287|emb|CAA41810| (X59084) vicilin-like
embryo storage protein [Zea mays]
Length = 540
Score = 35.2 bits (79), Expect = 5.0
Identities = 33/111 (29%), Positives = 42/111 (37%)
Frame = +2
Query: 2003 WRRCRRCSLAPPRAHCARR*IR*SRCGPAPQPCAAARNPWKPPERATARCITTAWWSPEA 2182
WR C + C R R + CG P+ A AR P R+ +R TA W+
Sbjct: 228 WRGCSGGMGRTRGSSCVPRRSRPASCGATPRRAATARTG--PCRRSASRAAPTASWTSG- 284
Query: 2183 *PPRAKRPFCPG*KSSTPGLGRSLAFWKSSTAPAWSASKTARSAWSGGPSP 2335
P +ST SST P +AS T+ S S PSP
Sbjct: 285 ----------PASPTSTG----------SSTRPTRAASTTSPSTTSASPSP 315
>gi|4885111|ref|NP_005176.1|| calmodulin-like 3
>gi|115502|sp|P27482|CALL_HUMAN CALMODULIN-RELATED
PROTEIN NB-1 (CALMODULIN-LIKE PROTEIN) (CLP)
>gi|71690|pir||MCHUNB calmodulin-related protein NB-1 -
human >gi|29650|emb|CAA31809| (X13461) hGH6
calmodulin-like protein [Homo sapiens] >gi|189081
(M58026) NB-1 [Homo sapiens]
Length = 149
Score = 35.2 bits (79), Expect = 5.0
Identities = 32/89 (35%), Positives = 47/89 (51%), Gaps = 17/89 (19%)
Frame = +1
Query: 1420 LFDHDGDGI--THASGWVKSD-----------DGLLVLDRNGNGRIDNGSELFGADTVLA 1560
LFD DGDG T G V D + +DR+GNG +D E G ++A
Sbjct: 19 LFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVD-FPEFLG---MMA 74
Query: 1561 NGHKATSGFEALRD----LDSNGDGLFNAADARFTDVRVWRDLNQD 1686
K T E +R+ D +G+G +AA+ R R+ L+ +
Sbjct: 75 RKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE 120
>gi|4262551|gb|AAD14686| (AF116268) G-protein XLAS [Mus musculus]
Length = 756
Score = 35.2 bits (79), Expect = 5.0
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 6/203 (2%)
Frame = -2
Query: 1157 PKNVPSTPAATVNTEATAAPIGPSRYTGVNSSPTALASAKPPIKPPRYALVQSCTICRLP 978
P+ + PA + + AAP+ P+ + + ++ P P V + T
Sbjct: 81 PEELEEAPAVRADPDGGAAPVAPA-----TPAESESEGSRDPAAEPASEAVPATTAESAS 135
Query: 977 SILPLAYAALASCAITASDSRSAA-----TPSLPSTRNA-SARAAADSGPNNCVVR*YLS 816
P+ A+ A++A+ + AA TP P+TR SARA +G V +
Sbjct: 136 GAAPVTQVEPAAAAVSATLAEPAARAAPITPKEPTTRAVPSARAHPAAG----AVPGAPA 191
Query: 815 LMSCTRRAPSR*VSKRAGMYRARAP*SPASTSGGLPSKPVSAKYCWLSKRGTPPGNSMME 636
+ + R A +R ++ AR+ + + LP++ +A + R G S
Sbjct: 192 MSASARAAAARAAYAGPLVWGARSLSATPAARASLPARAAAAARAASAARAVAAGRS-AS 250
Query: 635 PSALMATFK*PERCSDCAEIAWKDPATPK 549
+ A + P EI DP TP+
Sbjct: 251 AAPSRAHLRPPS-----PEIQVADPPTPR 274
>gi|3023166|gb|AAC12650.1| (AF055579) glycosidase OleR [Streptomyces
antibioticus]
Length = 769
Score = 35.2 bits (79), Expect = 5.0
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = -1
Query: 1761 VRRREGDGGNAQVREGEQFVGLGV---AILIEIAPHAHVRKAGVGGIEQAITVTIQITQR 1591
+R R G G + GE+ VG+ V A L P V AG GG+ T+T+ +T
Sbjct: 366 IRERAGAGSTVRYSTGEETVGVPVPQSAPLPRPRPSGEVFPAGGGGVLYDGTITVPVTGS 425
Query: 1590 F----KAGGGFVTVRQDG 1549
+ +A GG V DG
Sbjct: 426 YRIAARAQGGNAYVELDG 443
>gi|128484|sp|P15728|NODO_RHILV NODULATION PROTEIN O
>gi|95235|pir||S08385 nodO protein - Rhizobium
leguminosarum plasmid pIJ1089 >gi|280034|pir||A43721
nodule formation protein nodO - Rhizobium leguminosarum
bv. viciae plasmid pRL1JI >gi|46253|emb|CAA35178|
(X17285) nodO (AA 1-284) [Rhizobium leguminosarum]
>gi|152374 (M29532) nodO protein [Rhizobium
leguminosarum]
Length = 284
Score = 34.8 bits (78), Expect = 6.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +1
Query: 3358 PGNDTLKGWQGKDIXXXXXXXXXXXXXXXSNRLEGGAGDDVLKVSYWSADNVLSGGTGDD 3537
P ND + G + D + + G G D++ S +V+ GDD
Sbjct: 16 PENDIIDGGKKNDWIDAGNGDDRIKAGDGQDSITAGPGHDIVWAGKGS--DVIHADGGDD 73
Query: 3538 TLYGSAFADTYLFN-------QGDGHDTIIEQGGTDKLVFGEG 3645
LY A Y+ + G+G D + G+D LV G+G
Sbjct: 74 LLYSDASYPLYVTDPHRVIPHSGEGDDVLYAGPGSDILVAGDG 116
>gi|3386544|gb|AAC28389| (AF079528) IER5 [Mus musculus]
>gi|3411233|gb|AAC31197| (AF079527) IER5 [Mus musculus]
Length = 308
Score = 34.8 bits (78), Expect = 6.5
Identities = 35/83 (42%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Frame = +2
Query: 2084 PAPQ----PCAAARNPWKPPERATARCITTAWWSPEA*P-PRAKRP---FCPG*KSSTP- 2236
P PQ P A + W P AR AW PE P P+ +RP PG SS P
Sbjct: 67 PPPQQPGEPVAGPPSGWGEPPPPVARA---AWPEPEPQPQPQPQRPSVCHTPGAGSSEPV 123
Query: 2237 ----GLGRSLAFWKS-STAPAWSASKTARSAWSGGPS 2332
G G +L + S A AW + R+A SGG S
Sbjct: 124 AAVAGSGEALRGGEEDSAAAAWGRVERPRAASSGGGS 160
>gi|4507349|ref|NP_003176.1|| TATA box binding protein
(TBP)-associated factor, RNA polymerase II, C1, 130kD
>gi|3024681|sp|O00268|T2D3_HUMAN TRANSCRIPTION
INITIATION FACTOR TFIID 135 KD SUBUNIT (TAFII-135)
(TAFII135) (TAFII-130) (TAFII130)
>gi|2058326|emb|CAA72189| (Y11354) subunit of RNA
polymerase II transcription factor TFIID [Homo sapiens]
Length = 1083
Score = 34.8 bits (78), Expect = 6.5
Identities = 39/129 (30%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Frame = -3
Query: 940 APSPPATADRQPHRVCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARP--------P 785
AP+ PA A P PAPAT P P TA A P P A P
Sbjct: 260 APAAPAAAPPPPP---PAPATLARPPGHPAGPPTAAPA-----VPPPAAAQNGGSAGAAP 311
Query: 784 GECPSARGCIGPGRRNLPHPPAAACLPSRSAQSIAGCLNVAP--HRVIXXXXXXXXXXPL 611
P+A G G + P AAA P A+S + AP + + +
Sbjct: 312 APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASM 371
Query: 610 NSQRDALIVLKSPGRTPPP 554
L SP PPP
Sbjct: 372 VIGPTMQGALPSPAAVPPP 390
>gi|552806 (M36911) cytochrome c oxidase subunit I [Podospora
anserina]
Length = 787
Score = 34.4 bits (77), Expect = 8.5
Identities = 16/45 (35%), Positives = 27/45 (59%)
Frame = +1
Query: 481 LPRLLNNPNITSVDGLPIADLRRLGVAGSFQAISAQSEHLSGYLK 615
+P ++ NP++ + + AD +GVAGS + SA E ++ YLK
Sbjct: 454 MPSMIPNPDLAEMYYVSYADDWLIGVAGSSETASAMKESMAAYLK 498
>gi|394780|emb|CAA50739| (X71923) tenascin-X precursor [Homo sapiens]
Length = 750
Score = 34.4 bits (77), Expect = 8.5
Identities = 37/102 (36%), Positives = 39/102 (37%), Gaps = 17/102 (16%)
Frame = -3
Query: 4366 CHCRGCPAW*GPCCS---------RSPESRA------CRRQTRSVQCRRYGCGCHWKSTS 4232
C C P W GP CS SP S + C Q R C R C C T
Sbjct: 157 CTCSCEPGWGGPTCSDPTDAEIPPSSPPSASGSCPDDCNDQGR---CVRGRCVCFPGYTG 213
Query: 4231 PSNG--CCRGRCPGPAPHLALRVVTGHQRQESPHQTPACQYRPAQ*SCRGRLLC*IGMC 4061
PS G C G C G R V G + P C R C R C G C
Sbjct: 214 PSCGWPSCPGDCQGRG-----RCVQGVCVCRAGFSGPDCSQRSCPRGCSQRGRCEGGRC 267
>gi|539698|pir||A40701 tenascin-X precursor - human
Length = 3566
Score = 34.4 bits (77), Expect = 8.5
Identities = 37/102 (36%), Positives = 39/102 (37%), Gaps = 17/102 (16%)
Frame = -3
Query: 4366 CHCRGCPAW*GPCCS---------RSPESRA------CRRQTRSVQCRRYGCGCHWKSTS 4232
C C P W GP CS SP S + C Q R C R C C T
Sbjct: 154 CTCSCEPGWGGPTCSDPTDAEIPPSSPPSASGSCPDDCNDQGR---CVRGRCVCFPGYTG 210
Query: 4231 PSNG--CCRGRCPGPAPHLALRVVTGHQRQESPHQTPACQYRPAQ*SCRGRLLC*IGMC 4061
PS G C G C G R V G + P C R C R C G C
Sbjct: 211 PSCGWPSCPGDCQGRG-----RCVQGVCVCRAGFSGPDCSQRSCPRGCSQRGRCEGGRC 264
>gi|1841546|gb|AAB47488.1|AAB47488 (U89337) tenascin X [Homo sapiens]
Length = 4289
Score = 34.4 bits (77), Expect = 8.5
Identities = 37/102 (36%), Positives = 39/102 (37%), Gaps = 17/102 (16%)
Frame = -3
Query: 4366 CHCRGCPAW*GPCCS---------RSPESRA------CRRQTRSVQCRRYGCGCHWKSTS 4232
C C P W GP CS SP S + C Q R C R C C T
Sbjct: 154 CTCSCEPGWGGPTCSDPTDAEIPPSSPPSASGSCPDDCNDQGR---CVRGRCVCFPGYTG 210
Query: 4231 PSNG--CCRGRCPGPAPHLALRVVTGHQRQESPHQTPACQYRPAQ*SCRGRLLC*IGMC 4061
PS G C G C G R V G + P C R C R C G C
Sbjct: 211 PSCGWPSCPGDCQGRG-----RCVQGVCVCRAGFSGPDCSQRSCPRGCSQRGRCEGGRC 264
>gi|1084362|pir||S53504 extensin-like protein S3 - alfalfa >gi|535586
(L36120) proline rich protein [Medicago sativa]
Length = 228
Score = 34.4 bits (77), Expect = 8.5
Identities = 46/175 (26%), Positives = 60/175 (34%), Gaps = 2/175 (1%)
Frame = -3
Query: 1078 PESTAAQPLWPPPNHPSSHPDTHWSNPAQSAGCPRYCHWRTPHWHRAPSPPATADRQPHR 899
P S+ A P PP N P P T ++P P P +P PPA + P +
Sbjct: 30 PNSSPAPPT-PPANTP---PTTPQASPPPVQSSPPPVQSSPPPVQSSP-PPAQSTPPPVQ 84
Query: 898 VCPAPATHQHVPQQTPAPTTAWYADTCL*CPAPGARPPGECP--SARGCIGPGRRNLPHP 725
P P + QQ+P PT P P + PP P S P P
Sbjct: 85 SSPPPVSAPPPVQQSPPPTPL-TPPPVQSTPPPASPPPASPPPFSPPPATPPPATPPPAT 143
Query: 724 PAAACLPSRSAQSIAGCLNVAPHRVIXXXXXXXXXXPLNSQRDALIVLKSPGRTPPP 554
P A P+ + A AP + L S+ L + SP P P
Sbjct: 144 PPPALTPTPLSSPPATTPAPAPAK-------------LKSKAPTLAPVLSPSDAPAP 187
>gi|3873283 (AF099801) mannuronan C-5-epimerase-related protein AlgY
[Azotobacter vinelandii]
Length = 532
Score = 34.4 bits (77), Expect = 8.5
Identities = 36/112 (32%), Positives = 46/112 (40%), Gaps = 1/112 (0%)
Frame = +1
Query: 3445 SNRLEGGAGDDVLKVSYWSADNVLSGGTGDDTLYGSAFADTYLFN-QGDGHDTIIEQGGT 3621
+ +L GGAG D+L GG G D L G ADT+ F+ + D + T E
Sbjct: 391 NEQLLGGAGADLL-----------DGGAGRDRLTGGEEADTFRFSAREDSYRTASENFAD 439
Query: 3622 DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 3780
L F G D+ L LGNG D L + S GTR + E
Sbjct: 440 RILDFEAGTDRIDLSALG-----FSGLGNGRDG-TLAVQVNSAGTRTYLKSFE 486
Score = 34.4 bits (77), Expect = 8.5
Identities = 36/112 (32%), Positives = 46/112 (40%), Gaps = 1/112 (0%)
Frame = +1
Query: 3943 SNRLEGGAGDDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFN-KGDGHDTIIEQGGT 4119
+ +L GGAG D+L GG G D L G ADT+ F+ + D + T E
Sbjct: 391 NEQLLGGAGADLLD-----------GGAGRDRLTGGEEADTFRFSAREDSYRTASENFAD 439
Query: 4120 DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 4278
L F G D+ L LGNG D L + S GTR + E
Sbjct: 440 RILDFEAGTDRIDLSALG-----FSGLGNGRDG-TLAVQVNSAGTRTYLKSFE 486
Score = 34.4 bits (77), Expect = 8.5
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +1
Query: 2947 SNRLEGGAGNDVLKVSYWSADNVLIGGTGDDTLYGSAFADTYLFN-QGDGHDTIIEQGGT 3123
++ L GGA N+ L + ++L GG G D L G ADT+ F+ + D + T E
Sbjct: 382 NDTLIGGAANEQLLGG--AGADLLDGGAGRDRLTGGEEADTFRFSAREDSYRTASENFAD 439
Query: 3124 DKLVFGEGILAADVRLLREGQDVVLDLGNGHDSIRLKDWLTSNGTRNHSADIE 3282
L F G D+ L LGNG D L + S GTR + E
Sbjct: 440 RILDFEAGTDRIDLSALG-----FSGLGNGRDG-TLAVQVNSAGTRTYLKSFE 486
>gi|3800845 (AF081668) VU91A calmodulin [synthetic construct]
Length = 147
Score = 34.4 bits (77), Expect = 8.5
Identities = 31/76 (40%), Positives = 42/76 (54%), Gaps = 17/76 (22%)
Frame = +1
Query: 1420 LFDHDGDGI--THASGWV-----------KSDDGLLVLDRNGNGRIDNGSELFGADTVLA 1560
LFD DGDG T G V + D + +D +GNG ID L ++A
Sbjct: 19 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL----NLMA 74
Query: 1561 NGHKATSGFEALRD----LDSNGDGLFNAADAR 1647
K T E L++ D NGDGL +AA+ +
Sbjct: 75 RKMKDTDSEEELKEAFKVFDKNGDGLISAAELK 107
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.316 0.136 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1213989399
Number of Sequences: 443958
Number of extensions: 28931874
Number of successful extensions: 104047
Number of sequences better than 10.0: 511
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 98055
Number of HSP's gapped (non-prelim): 2992
length of query: 1637
length of database: 136,619,797
effective HSP length: 59
effective length of query: 1577
effective length of database: 110,426,275
effective search space: 174142235675
effective search space used: 174142235675
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 77 (34.4 bits)