BLASTX 2.0.10 [Aug-26-1999]
Query= XF-05E12-GL49
(198 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|6225361|sp|O34171|FLII_AGRT1 FLAGELLUM-SPECIFIC ATP SYNTHASE... 31 1.0
gi|6226815|sp|O54249|FLII_RHIME FLAGELLUM-SPECIFIC ATP SYNTHASE... 30 2.3
gi|1109865|gb|AAA83178.1| (U41540) Contains similarity to Pfam ... 30 2.3
gi|3645984|emb|CAA20887.1| (AL031581) /prediction=(method:""gen... 30 2.3
gi|1709211|sp|P54697|MYSJ_DICDI MYOSIN IJ HEAVY CHAIN >gi|11507... 28 9.0
>gi|6225361|sp|O34171|FLII_AGRT1 FLAGELLUM-SPECIFIC ATP SYNTHASE
>gi|2459709|gb|AAB71785.1| (U95165) FliI [Agrobacterium
tumefaciens]
Length = 473
Score = 31.3 bits (69), Expect = 1.0
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 73 TRQAVERFTPVESELLSRLKGLLEDYEEVRD 165
+R A + +TP + +L+SRLK L+ +EE RD
Sbjct: 377 SRLAKKAWTPDQEKLVSRLKALVHRFEETRD 407
>gi|6226815|sp|O54249|FLII_RHIME FLAGELLUM-SPECIFIC ATP SYNTHASE
>gi|2916791|emb|CAA11957| (AJ224445) flagellar export
apparatus protein [Sinorhizobium meliloti]
Length = 467
Score = 30.1 bits (66), Expect = 2.3
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 73 TRQAVERFTPVESELLSRLKGLLEDYEEVRD 165
+R A + +TP + +L++RLK L+ +EE RD
Sbjct: 370 SRLARKAWTPDQEKLVARLKSLIHRFEETRD 400
>gi|1109865|gb|AAA83178.1| (U41540) Contains similarity to Pfam
domain: PF00566 (TBC), Score=117.6, E-value=7.8e-32, N=1
[Caenorhabditis elegans]
Length = 1142
Score = 30.1 bits (66), Expect = 2.3
Identities = 11/37 (29%), Positives = 22/37 (58%)
Frame = +1
Query: 70 TTRQAVERFTPVESELLSRLKGLLEDYEEVRDALEQD 180
T+ A+ER T ++L K L+ +YE++++ +D
Sbjct: 783 TSANAIERLTRQNMDILEENKNLMREYEQIKEMYRRD 819
>gi|3645984|emb|CAA20887.1| (AL031581)
/prediction=(method:""genefinder"", version:""084"",
score:""69.21""); /prediction=(method:""genscan"",
version:""1.0""); /match=(desc:""GH16756.5prime GH
Drosophila melanogaster head pOT2 Drosophila
melanogaster c...
Length = 408
Score = 30.1 bits (66), Expect = 2.3
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Frame = +1
Query: 46 DSELVNDLTTRQAVERFTPVESELLSRLKGLLEDYEEVRDALEQ----DGDAQ 192
D E+ NDLTT + + +E + S+ K ++ EE +DA +Q DG Q
Sbjct: 57 DMEIDNDLTTSERMPTVAELEQPMDSKTKREKKEEEEQKDAQDQKPLEDGSVQ 109
>gi|1709211|sp|P54697|MYSJ_DICDI MYOSIN IJ HEAVY CHAIN >gi|1150766
(U42409) myosin heavy chain [Dictyostelium discoideum]
Length = 2245
Score = 28.2 bits (61), Expect = 9.0
Identities = 13/43 (30%), Positives = 25/43 (57%)
Frame = +1
Query: 52 ELVNDLTTRQAVERFTPVESELLSRLKGLLEDYEEVRDALEQD 180
EL + + Q + T +E + +LKG LE+Y++ + L+Q+
Sbjct: 1243 ELTDHKSKLQIQLQLTEQSNEKIKKLKGKLEEYQDEKKQLQQE 1285
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45392115
Number of Sequences: 443958
Number of extensions: 632614
Number of successful extensions: 1765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1760
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 136,619,797
effective HSP length: 44
effective length of query: 21
effective length of database: 117,085,645
effective search space: 2458798545
effective search space used: 2458798545
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 61 (28.2 bits)