BLASTX 2.0.10 [Aug-26-1999]
Query= XF-05E12-GL26
(678 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1729783|emb|CAA70931| (Y09798) colR [Pseudomonas fluorescens] 272 2e-72
gi|2222756|emb|CAB09978| (Z97182) tcrA [Mycobacterium tuberculo... 158 5e-38
gi|1408184 (U56083) two component response regulator [Mycobacte... 154 6e-37
gi|1176110|sp|P45337|YGIX_HAEIN PROBABLE TRANSCRIPTIONAL REGULA... 147 9e-35
gi|729183|sp|Q02540|COPR_PSESM TRANSCRIPTIONAL ACTIVATOR PROTEI... 146 1e-34
gi|6458452|gb|AAF10321.1|AE001930_2 (AE001930) response regulat... 146 2e-34
gi|2632045|emb|CAA05604| (AJ002571) YkoG [Bacillus subtilis] >g... 145 4e-34
gi|1653824|dbj|BAA18735| (D90916) regulatory components of sens... 145 4e-34
gi|2916942|emb|CAA17580| (AL021999) hypothetical protein Rv0981... 144 8e-34
gi|2500741|sp|Q44006|CZCR_ALCEU TRANSCRIPTIONAL ACTIVATOR PROTE... 144 8e-34
gi|5777378|emb|CAB53386.1| (AJ132741) transcriptional regulator... 143 1e-33
gi|2120818|pir||S58232 PopP protein - Rhizobium leguminosarum >... 143 1e-33
gi|4980903|gb|AAD35484.1|AE001719_10 (AE001719) response regula... 143 1e-33
gi|3511129 (AF060858) regulatory protein CopR [Salmonella dublin] 143 1e-33
gi|3913940|sp|O31395|IRLR_BURPS TRANSCRIPTIONAL ACTIVATOR PROTE... 142 3e-33
gi|4455703|emb|CAB36688.1| (AL035500) putative two-component re... 142 3e-33
gi|2598275|emb|CAA73687| (Y13235) FeuP protein [Brucella suis] 141 4e-33
gi|5921515|emb|CAB56468.1| (Y14018) czrR protein [Pseudomonas a... 140 1e-32
gi|6117972|gb|AAF03932.1|AF139908_2 (AF139908) LisR [Listeria m... 140 1e-32
gi|1001644|dbj|BAA10375| (D64002) regulatory components of sens... 139 2e-32
gi|2500750|sp|P76340|YEDW_ECOLI PROBABLE TRANSCRIPTIONAL REGULA... 138 4e-32
gi|1736638|dbj|BAA15796| (D90835) Transcriptional activator pro... 138 4e-32
gi|4206626 (AF067954) putative transcriptional regulator respon... 138 5e-32
gi|6045171|dbj|BAA85309.1| (AB033420) ORFR [Pseudomonas syringae] 137 8e-32
gi|2500749|sp|P77380|YLCA_ECOLI PROBABLE TRANSCRIPTIONAL REGULA... 137 8e-32
gi|1723888|sp|P52076|YGIX_ECOLI PROBABLE TRANSCRIPTIONAL REGULA... 137 8e-32
gi|6174678|dbj|BAA85986.1| (AB024522) gcrR [Streptococcus mutans] 136 2e-31
gi|543777|sp|Q04942|AFQ1_STRCO TRANSCRIPTIONAL REGULATORY PROTE... 135 3e-31
gi|1834375|emb|CAA70859| (Y09666) RagA [Bradyrhizobium japonicum] 134 7e-31
gi|1208484|dbj|BAA10652| (D64004) regulatory components of sens... 134 9e-31
gi|2815358|emb|CAA16481| (AL021530) puative turgor pressure reg... 134 9e-31
gi|6531667|gb|AAF15533.1|AF196490_3 (AF196490) phosphate regulo... 133 1e-30
gi|3599371 (AF082668) CsrR [Streptococcus pyogenes] 132 2e-30
gi|6458493|gb|AAF10359.1|AE001933_3 (AE001933) response regulat... 131 5e-30
gi|1652523|dbj|BAA17444| (D90906) regulatory components of sens... 131 5e-30
gi|6002654|gb|AAF00081.1|AF095713_1 (AF095713) response regulat... 131 6e-30
gi|2072713|emb|CAB08347| (Z95121) mtrA [Mycobacterium tuberculo... 130 1e-29
gi|509815 (U01971) MtrA [Mycobacterium tuberculosis] 130 1e-29
gi|729232|sp|Q03756|CUTR_STRCO TRANSCRIPTIONAL REGULATORY PROTE... 130 1e-29
gi|4539212|emb|CAB39870.1| (AL049497) putative two component re... 129 2e-29
gi|1055347 (U38917) response regulator PhoB [Synechococcus WH7803] 129 2e-29
gi|387603 (M95680) putative [Fremyella diplosiphon] 129 3e-29
gi|417621|sp|Q01473|RCAC_FREDI RCAC PROTEIN >gi|282227|pir||S27... 129 3e-29
gi|2769532|emb|CAA11074| (AJ223073) phosphate regulatory protei... 127 7e-29
gi|4982229|gb|AAD36722.1|AE001807_13 (AE001807) response regula... 126 2e-28
gi|1575577 (U67196) DNA-binding response regulator [Thermotoga ... 126 2e-28
gi|4481749|gb|AAD21216| (AF007865) BacR [Bacillus licheniformis] 126 2e-28
gi|2687343|emb|CAA15884| (AL020958) two-component system regula... 125 3e-28
gi|6466297|gb|AAF12879.1|AF022186_1 (AF022186) unknown [Cyanidi... 125 3e-28
gi|135529|sp|P22104|TCTD_SALTY TRANSCRIPTIONAL REGULATORY PROTE... 125 3e-28
gi|1314043|emb|CAA97378| (Z73101) hypothetical protein Rv0903c ... 125 4e-28
gi|1073570|pir||S52257 pcoR protein - Escherichia coli >gi|6191... 125 4e-28
gi|538802|pir||B40656 regulatory protein pmrA - Salmonella typh... 124 6e-28
gi|1869995|emb|CAB06846| (Z92539) hypothetical protein Rv1033c ... 124 6e-28
gi|4726009|emb|CAB41738.1| (AL049731) putative two component re... 124 8e-28
gi|1736640|dbj|BAA15797| (D90836) Transcriptional activator pro... 124 8e-28
gi|1731207|sp|Q11156|RGX3_MYCTU SENSORY TRANSDUCTION PROTEIN RE... 123 1e-27
gi|6685724|sp|Q52990|PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTION... 123 1e-27
gi|1575690 (U70379) response regulator [Synechococcus PCC7942] 123 2e-27
gi|2190436|emb|CAA73956| (Y13627) RegX3 [Mycobacterium bovis BCG] 123 2e-27
gi|548535|sp|P36556|BASR_SALTY TRANSCRIPTIONAL REGULATORY PROTE... 122 2e-27
gi|466194|sp|P35163|RESD_BACSU TRANSCRIPTIONAL REGULATORY PROTE... 122 2e-27
gi|2440114|emb|CAB16701| (Z99494) two-component regulator [Myco... 122 2e-27
gi|1805445|dbj|BAA09007| (D50453) homologue of alkaline phospha... 122 3e-27
gi|6460139|gb|AAF11874.1|AE002064_5 (AE002064) response regulat... 122 4e-27
gi|2145537|pir||S70164 pcoR protein - Escherichia coli plasmid ... 122 4e-27
gi|6467529|gb|AAF13177.1|AF181078_1 (AF181078) response regulat... 121 5e-27
gi|2960189|emb|CAA18087.1| (AL022121) hypothetical protein Rv37... 121 5e-27
gi|400783|sp|P13792|PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS T... 121 7e-27
gi|2293270 (AF008220) signal transduction regulator [Bacillus s... 121 7e-27
gi|6460836|gb|AAF12540.1|AE001826_9 (AE001826) response regulat... 120 9e-27
gi|4768853|gb|AAD29647.1|AF124757_7 (AF124757) phosphate regula... 119 2e-26
gi|4104599 (AF036965) putative response regulator [Lactobacillu... 119 3e-26
gi|3401948|dbj|BAA32131| (AB011413) Orf3 [Streptomyces griseus] 119 3e-26
gi|584828|sp|P30843|BASR_ECOLI TRANSCRIPTIONAL REGULATORY PROTE... 118 3e-26
gi|1360982|pir||S56341 basR protein - Escherichia coli >gi|5369... 118 3e-26
gi|5830529|emb|CAB54572.1| (AJ006394) response regulator [Strep... 118 3e-26
gi|730805|sp|P39663|SPHR_SYNP7 ALKALINE PHOSPHATASE SYNTHESIS T... 118 3e-26
gi|2961074 (AF029846) TctD [Salmonella typhi] 118 4e-26
gi|2952543 (AF051939) response regulator CtrA [Brucella abortus] 118 4e-26
gi|1617255|emb|CAA47148| (X66587) phoP [Yersinia pseudotubercul... 118 6e-26
gi|3860641|emb|CAA14542| (AJ235270) TRANSCRIPTIONAL ACTIVATOR P... 118 6e-26
gi|73046|pir||RGBSAP alkaline phosphatase regulatory protein - ... 117 1e-25
gi|3980223|emb|CAA10325.1| (AJ131213) response regulator [Strep... 117 1e-25
gi|6689205|emb|CAB65399.1| (AJ012052) VicR protein [Staphylococ... 117 1e-25
gi|6448492|emb|CAB61229.1| (Y15706) vanr protein [Bacillus circ... 117 1e-25
gi|5114230|gb|AAD40237.1|AF136709_1 (AF136709) response regulat... 117 1e-25
gi|6687469|emb|CAB64972.1| (AJ012050) VicR protein [Enterococcu... 117 1e-25
gi|1550635|emb|CAB02400| (Z80226) phoP [Mycobacterium tuberculo... 116 1e-25
gi|5830538|emb|CAB54578.1| (AJ006397) response regulator [Strep... 116 2e-25
gi|1621018|emb|CAA70004| (Y08758) PhoP protein [Yersinia pestis] 116 2e-25
gi|4530445|gb|AAD22036.1| (AF118229) response regulator PnpR [S... 115 4e-25
gi|4104695 (AF039082) putative response regulator; RrF [Lactoco... 115 5e-25
gi|987095|emb|CAA60455| (X86780) response regulator [Streptomyc... 115 5e-25
gi|4433393|gb|AAD20723| (AF051157) response regulator homolog O... 114 7e-25
gi|1151107 (U39559) cell cycle transcriptional regulator [Caulo... 114 9e-25
gi|1652041|dbj|BAA16966| (D90902) regulatory components of sens... 114 9e-25
gi|3849845|emb|CAA11808| (AJ224003) response regulator [Carnoba... 114 9e-25
gi|5830523|emb|CAB54568.1| (AJ006392) response regulator [Strep... 113 1e-24
gi|586808|sp|P37478|YYCF_BACSU HYPOTHETICAL 27.2 KD SENSORY TRA... 113 1e-24
gi|130127|sp|P14146|PHOP_SALTY VIRULENCE TRANSCRIPTIONAL REGULA... 113 1e-24
gi|130126|sp|P23836|PHOP_ECOLI TRANSCRIPTIONAL REGULATORY PROTE... 113 1e-24
gi|4104608 (AF036968) putative response regulator [Lactobacillu... 113 1e-24
gi|6460240|gb|AAF11967.1|AE002072_9 (AE002072) DNA-binding resp... 113 1e-24
gi|1001828|dbj|BAA10709| (D64005) regulatory components of sens... 113 2e-24
gi|586203|sp|Q06239|VANR_ENTFC REGULATORY PROTEIN VANR >gi|2822... 112 3e-24
gi|1731135|sp|P54443|YRKP_BACSU HYPOTHETICAL 26.8 KD SENSORY TR... 112 3e-24
gi|1351749|sp|P48259|YC27_CYAPA PROBABLE TRANSCRIPTIONAL REGULA... 112 3e-24
gi|6136611|sp|O78428|YC27_GUITH PROBABLE TRANSCRIPTIONAL REGULA... 112 3e-24
gi|1175624|sp|P42244|YCBL_BACSU HYPOTHETICAL 25.8 KD SENSORY TR... 111 4e-24
gi|3724162|emb|CAA09795| (AJ011832) PhoP protein [Yersinia ente... 111 4e-24
gi|129159|sp|P28835|YC27_PORAE PROBABLE TRANSCRIPTIONAL REGULAT... 111 6e-24
gi|2984736|gb|AAC08021.1| (AF053960) response regulator protein... 110 1e-23
gi|2500744|sp|Q47744|VANR_ENTFA REGULATORY PROTEIN VANRB >gi|12... 110 1e-23
gi|3282774|gb|AAC25063.1| (AF043352) response regulator homolog... 110 1e-23
gi|1001717|dbj|BAA10554| (D64004) regulatory components of sens... 109 2e-23
gi|3913255|sp|Q54954|CIAR_STRPN TRANSCRIPTIONAL REGULATORY PROT... 109 2e-23
gi|5830517|emb|CAB54564.1| (AJ005926) response regulator [Strep... 109 2e-23
gi|1870001|emb|CAB06852| (Z92539) kdpE [Mycobacterium tuberculo... 109 3e-23
gi|2982999 (AE000683) transcriptional regulator (PhoB-like) [Aq... 108 4e-23
gi|4104602 (AF036966) putative response regulator [Lactobacillu... 108 5e-23
gi|6460051|gb|AAF11793.1|AE002057_1 (AE002057) phosphate regulo... 108 6e-23
gi|3288064|emb|CAB09801| (Z97065) RisA protein [Bordetella bron... 107 8e-23
gi|130120|sp|P23620|PHOB_PSEAE PHOSPHATE REGULON TRANSCRIPTIONA... 107 8e-23
gi|1731206|sp|P54884|YV17_MYCLE HYPOTHETICAL SENSORY TRANSDUCTI... 107 8e-23
gi|6689352|emb|CAB65451.1| (AJ012051) VicR protein [Streptococc... 107 8e-23
gi|130119|sp|P08402|PHOB_ECOLI PHOSPHATE REGULON TRANSCRIPTIONA... 107 1e-22
gi|1172482|sp|P45606|PHOB_SHIDY PHOSPHATE REGULON TRANSCRIPTION... 107 1e-22
gi|541208|pir||S41887 ompR protein - Salmonella typhi 107 1e-22
gi|3236110|emb|CAA04532| (AJ001103) arcA [Lactococcus lactis] 106 1e-22
gi|129158|sp|P03025|OMPR_ECOLI TRANSCRIPTIONAL REGULATORY PROTE... 106 2e-22
gi|2108342|emb|CAA70146| (Y08950) OmpR protein [Yersinia entero... 106 2e-22
gi|4336895|gb|AAD18001| (AF110496) putative His-Asp response re... 106 2e-22
gi|1747435 (U39673) KdpE [Clostridium acetobutylicum] 105 3e-22
gi|1172483|sp|P45607|PHOB_SHIFL PHOSPHATE REGULON TRANSCRIPTION... 105 3e-22
gi|2313252|gb|AAD07234.1| (AE000537) response regulator (ompR) ... 105 4e-22
gi|1172481|sp|P45605|PHOB_KLEPN PHOSPHATE REGULON TRANSCRIPTION... 105 4e-22
gi|4104605 (AF036967) putative response regulator [Lactobacillu... 104 6e-22
gi|129160|sp|P08981|OMPR_SALTY TRANSCRIPTIONAL REGULATORY PROTE... 104 7e-22
gi|4154653 (AE001453) putative TRANSCRIPTIONAL REGULATOR [Helic... 104 7e-22
gi|4583523|gb|AAD25108.1|AF140356_1 (AF140356) VncR [Streptococ... 104 7e-22
gi|5353563|gb|AAD42180.1|AF130997_1 (AF130997) response regulat... 104 1e-21
gi|1070667|pir||RGECOR osmosensor response regulator ompR - Esc... 104 1e-21
gi|79509|pir||S22632 petR protein - Rhodobacter capsulatus >gi|... 103 2e-21
gi|6127220|gb|AAF04314.1| (AF150928) putative 2-component regul... 102 2e-21
gi|1001817|dbj|BAA10698| (D64005) regulatory components of sens... 102 3e-21
gi|5759261|gb|AAD51056.1|AF175293_1 (AF175293) response regulat... 102 3e-21
gi|2502067 (AF026542) ScnR [Streptococcus pyogenes] 101 5e-21
gi|6137054|emb|CAB59609.1| (AL132662) putative response regulat... 101 8e-21
gi|1176993|sp|P42421|YXDJ_BACSU HYPOTHETICAL 26.6 KD SENSORY TR... 100 1e-20
gi|4103328 (AF022772) response regulator [Erwinia carotovora su... 100 1e-20
gi|485521|pir||S33662 rprY protein - Bacteroides fragilis 99 3e-20
gi|4981814|gb|AAD36333.1|AE001781_4 (AE001781) phosphate regulo... 99 3e-20
gi|1653736|dbj|BAA18647| (D90916) transcriptional regulatory pr... 99 3e-20
gi|3367760|emb|CAA20085| (AL031155) putative two-component regu... 98 7e-20
gi|2126761|pir||I40084 gtcR protein - Bacillus brevis >gi|46874... 96 2e-19
gi|299503|bbs|129436 RprY=inner membrane signal-transducing pro... 96 2e-19
gi|1705849|sp|Q07783|CHVI_AGRTU PROBABLE TRANSCRIPTIONAL REGULA... 95 6e-19
gi|3025460 (U58131) PhoP [Clostridium acetobutylicum] 94 8e-19
gi|3860984|emb|CAA14884| (AJ235271) PETR PROTEIN (ompR) [Ricket... 94 1e-18
gi|625683|pir||A49903 phosphate regulatory protein ChvI - Agrob... 93 2e-18
gi|6093700|sp|P31079|PETR_RHOCA PETR PROTEIN 91 7e-18
gi|2613088|gb|AAB84278.1| (AF030316) OmpR [Yersinia enterocolit... 91 9e-18
gi|2613084|gb|AAB84276.1| (AF030314) OmpR [Shigella flexneri] 89 3e-17
gi|602401 (U07746) OmpR [Xenorhabdus nematophilus] 88 8e-17
gi|1169089|sp|P44895|CPXR_HAEIN TRANSCRIPTIONAL REGULATORY PROT... 88 8e-17
gi|1621045 (U50932) GltR [Pseudomonas aeruginosa] 87 1e-16
gi|2500753|sp|P55701|Y4XI_RHISN PROBABLE TRANSCRIPTIONAL REGULA... 86 2e-16
gi|1172480|sp|P45189|PHOB_HAEIN PHOSPHATE REGULON TRANSCRIPTION... 86 2e-16
gi|2613090|gb|AAB84279.1| (AF030317) OmpR [Proteus vulgaris] 86 3e-16
gi|2613086|gb|AAB84277.1| (AF030315) OmpR [Enterobacter cloacae] 85 4e-16
gi|2632486|emb|CAB11994| (Z99105) similar to two-component resp... 84 1e-15
gi|1666499|emb|CAA70482| (Y09296) response regulator of two-com... 83 3e-15
gi|281708|pir||S28674 hypothetical protein 2 - Rhizobium sp. (s... 82 6e-15
gi|2126074|pir||I69716 torCAD response regulator - Escherichia ... 80 1e-14
gi|2507607|sp|P38684|TORR_ECOLI TORCAD OPERON TRANSCRIPTIONAL R... 80 2e-14
gi|2073506|emb|CAA72451| (Y11777) transcriptional regulatory pr... 78 9e-14
gi|4511977|gb|AAD21537.1| (AF088896) aerobic respiration contro... 77 2e-13
gi|2314190|gb|AAD08088.1| (AE000612) response regulator [Helico... 76 3e-13
gi|4154918 (AE001473) putative TRANSCRIPTIONAL REGULATOR [Helic... 75 6e-13
gi|5830532|emb|CAB54574.1| (AJ006395) response regulator [Strep... 72 5e-12
gi|2853598 (AF031898) CheY [Pseudomonas putida] 72 5e-12
gi|2914154|pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V... 71 1e-11
gi|2914156|pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V... 71 1e-11
gi|230455|pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) ... 70 2e-11
gi|515285|pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2C... 70 2e-11
gi|116292|sp|P06657|CHEY_SALTY CHEMOTAXIS PROTEIN CHEY >gi|7260... 70 2e-11
gi|2500739|sp|Q51455|CHEY_PSEAE CHEMOTAXIS PROTEIN CHEY >gi|948... 69 3e-11
gi|1688294 (U78087) CheY [Burkholderia pseudomallei] 69 3e-11
gi|230822|pdb|3CHY| CheY >gi|576050|pdb|1CHN| Chey Complexed ... 68 8e-11
gi|1421458|pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 St... 68 8e-11
gi|116291|sp|P06143|CHEY_ECOLI CHEMOTAXIS PROTEIN CHEY >gi|7260... 68 8e-11
gi|999670|pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inse... 68 8e-11
gi|6435696|pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, ... 68 1e-10
gi|145525 (M13463) cheY peptide [Escherichia coli] 67 1e-10
gi|2073556 (U62023) sensor/regulator protein RpfA [Erwinia caro... 67 2e-10
gi|1942868|pdb|5CHY| Structure Of Chemotaxis Protein Chey 66 3e-10
gi|1421405|pdb|1YMU|A Chain A, Signal Transduction Protein Chey... 66 3e-10
gi|1065051|pdb|1VLZ|A Escherichia coli >gi|1065052|pdb|1VLZ|B E... 66 4e-10
gi|1421407|pdb|1YMV| Signal Transduction Protein Chey Mutant W... 66 4e-10
gi|1172506|sp|P46384|PILG_PSEAE PILG PROTEIN >gi|538678|pir||A4... 66 4e-10
gi|2983588 (AE000724) transcriptional regulator (NtrC family) [... 66 4e-10
gi|2781290|pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced... 65 5e-10
gi|1710787|sp|P52108|RSTA_ECOLI TRANSCRIPTIONAL REGULATORY PROT... 63 2e-09
gi|585207|sp|Q05943|GLNR_STRCO TRANSCRIPTIONAL REGULATORY PROTE... 55 8e-07
gi|2916876|emb|CAA17624.1| (AL022004) hypothetical protein Rv08... 53 2e-06
gi|1170464|sp|P43016|IAGA_SALTI INVASION PROTEIN IAGA >gi|79114... 45 5e-04
gi|1170465|sp|P43015|IAGA_SALTY INVASION PROTEIN IAGA (PROTEIN ... 45 5e-04
gi|2145544|pir||S70816 hilA protein - Salmonella typhimurium (f... 44 0.001
gi|6318173|emb|CAB60259.1| (AJ250862) MrsR1 protein [Bacillus s... 32 6.2
gi|117936|sp|P14922|SSN6_YEAST GLUCOSE REPRESSION MEDIATOR PROT... 31 8.2
gi|6319589|ref|NP_009670.1|CYC8| Transcription regulatory prote... 31 8.2
>gi|1729783|emb|CAA70931| (Y09798) colR [Pseudomonas fluorescens]
Length = 227
Score = 272 bits (688), Expect = 2e-72
Identities = 129/220 (58%), Positives = 166/220 (74%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL++EDN DI ANL DYL +G+ VD A DG++GLHLA +D IVLD+ LPG+DG
Sbjct: 1 MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+C++LR +AR TPV+MLTARD LD++L GF SGADDYLIKPFAL E+ R+ A+ RR
Sbjct: 61 TLCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+G R L+ GDL Y+LDTLEV R GKLL+LNP GLK+L LM+ +P V+ R+ LE +W
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180
Query: 541 GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
G++ PDSDSLR H+H LR V+DK D PL+ T HG+GYR+
Sbjct: 181 GDDCPDSDSLRSHVHQLRQVIDKRSDKPLLHTVHGVGYRL 220
>gi|2222756|emb|CAB09978| (Z97182) tcrA [Mycobacterium tuberculosis]
Length = 253
Score = 158 bits (395), Expect = 5e-38
Identities = 95/220 (43%), Positives = 127/220 (57%), Gaps = 1/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
VRILV+ED + A L L E GH VD ADG + ++DA+VLD+ LPG+DG
Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EVC +LR + R TPVLMLTAR ++ +++ G D GADDYL KPF L E+ RL ALSRRG
Sbjct: 83 EVCARLRRQ-RVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRG 141
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ LE GDL + V R ++L+ +L+AL+ V TR L R W
Sbjct: 142 PIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCW 201
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
S+ + V+I LR +D+PF V ++T G GYR+
Sbjct: 202 DAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
>gi|1408184 (U56083) two component response regulator [Mycobacterium
tuberculosis]
Length = 234
Score = 154 bits (386), Expect = 6e-37
Identities = 94/220 (42%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
V ILV+ED + A L L E GH VD ADG + ++DA+VLD+ LPG+DG
Sbjct: 4 VHILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGIDGF 63
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EVC +LR + R TPVLMLTAR + +++ G D GADDYL KPF L E+ RL ALSRRG
Sbjct: 64 EVCARLRRQ-RVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRG 122
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ LE GDL + V R ++L+ +L+AL+ V TR L R W
Sbjct: 123 PIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCW 182
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
S+ + V+I LR +D+PF V ++T G GYR+
Sbjct: 183 DAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 223
>gi|1176110|sp|P45337|YGIX_HAEIN PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN HI1708 >gi|1075368|pir||F64137 transcriptional
regulatory protein (basR) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1574562 (U32843)
transcriptional regulatory protein (ygiX) [Haemophilus
influenzae Rd]
Length = 221
Score = 147 bits (367), Expect = 9e-35
Identities = 90/220 (40%), Positives = 130/220 (58%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL+IED++ I L L + G AVD+ DG TG+ +DA+VLDL LP +DG+
Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EV ++ R+ + PVL+LTARD+LD ++ G SGADDYL KPFAL EV RL AL RR
Sbjct: 61 EVLQQWRSN-HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 537
G V+E ++ + + V + + L K+L+ M V++R +E ++
Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179
Query: 538 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
W EE+ S +L VHI+ LR + K F I+T HG+GY +
Sbjct: 180 SWDEEI-SSGALDVHIYNLRQKLGKQF----IRTVHGVGYAL 216
>gi|729183|sp|Q02540|COPR_PSESM TRANSCRIPTIONAL ACTIVATOR PROTEIN
COPR >gi|420851|pir||B47080 transcriptional activator
protein copR - Pseudomonas syringae >gi|151181 (L05176)
transcriptional activator [Pseudomonas syringae]
Length = 227
Score = 146 bits (366), Expect = 1e-34
Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+++LV ED L L E G VD G + A+ +D ++LD+ +PG+DG
Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EV R+LR A + PVL LTARD +D+++ G + GADDYL+KPFAL E+ R+ L RRG
Sbjct: 61 EVIRRLRT-AGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRG 119
Query: 361 KGLQTRV-LETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
LQ + L+ GDL+ +L R GK ++L +L+ LM V+++ + ++V
Sbjct: 120 SSLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 179
Query: 538 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
W D++ + V I LRA +D F+V L+ T G+GY + D
Sbjct: 180 WDMNFDSDTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLEAQD 225
>gi|6458452|gb|AAF10321.1|AE001930_2 (AE001930) response regulator
[Deinococcus radiodurans]
Length = 225
Score = 146 bits (364), Expect = 2e-34
Identities = 84/216 (38%), Positives = 128/216 (58%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+LVIED DIA + L G+A + A DGVTGL D ++LDL LP +DG+EV
Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R++R + TP+++LTA+D + +K+ G DSGADDYLIKPF+++E+ R+ A RR
Sbjct: 67 ARRIRKTSN--TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNP 124
Query: 367 LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGE 546
T + DL NLD E+ R G+ ++L+ ++L+ L V +R ++E +VW E
Sbjct: 125 AVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWPE 184
Query: 547 ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
S+ + V+I LR +++ + LI T G+GY
Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGY 220
>gi|2632045|emb|CAA05604| (AJ002571) YkoG [Bacillus subtilis]
>gi|2633679|emb|CAB13182| (Z99110) similar to
two-component response regulator [YkoH] [Bacillus
subtilis]
Length = 228
Score = 145 bits (362), Expect = 4e-34
Identities = 85/218 (38%), Positives = 133/218 (60%), Gaps = 5/218 (2%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
IL++ED IA L LE G++V +G GL A + ++LD+ LPG+ G+EV
Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R+LR + QTPV++LTARDS+ +K+TG D GA+DY+ KPF ++E+ R+ A R+ G
Sbjct: 66 LRRLR-KTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ-NG 123
Query: 367 LQTRVLET----GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+T + T DL N T EVRR K ++L P +L +++ V+TR+ + +
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183
Query: 535 VWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
VWG + + D++ + V+I +R +D P++ LI T G+GY I
Sbjct: 184 VWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226
>gi|1653824|dbj|BAA18735| (D90916) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 234
Score = 145 bits (362), Expect = 4e-34
Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL++ED+ +A L + L ++ + VD A D A E+D ++LD+ LP +DGI
Sbjct: 1 MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+C+K R+ + P+LM+TARD++++K+TG D+GADDY++KP L E+ R+ AL RRG
Sbjct: 61 TLCQKWRSHSYLM-PILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
VLE G + + T EV ++L L IL+ L+ V++R + +W
Sbjct: 120 CATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIW 179
Query: 541 G-EELPDSDSLRVHIHGLRAVVDKP-FDVPLIQTRHGIGYRIA 663
E P+ D+++VH+ LR + I+T HGIGYR+A
Sbjct: 180 KLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLA 222
>gi|2916942|emb|CAA17580| (AL021999) hypothetical protein Rv0981
[Mycobacterium tuberculosis]
Length = 230
Score = 144 bits (359), Expect = 8e-34
Identities = 85/218 (38%), Positives = 128/218 (57%), Gaps = 4/218 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
VRILV++D+ + +L L G++V+ A DGV L + DA+VLD+ +P +DG+
Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGL 62
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EVCR+LR P+L+LTARDS+ ++ G D+GADDYL KPFAL+E+ R+ AL RR
Sbjct: 63 EVCRQLRGTG-DDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
Query: 361 K---GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
K ++ + DL + T EV R + + L T +L+ L+ V+TR +
Sbjct: 122 KPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILE 181
Query: 532 RVWGEELPDS-DSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
VWG + P S ++L V++ LR + + LI T G+GY
Sbjct: 182 EVWGFDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGY 223
>gi|2500741|sp|Q44006|CZCR_ALCEU TRANSCRIPTIONAL ACTIVATOR PROTEIN
CZCR >gi|1403127|emb|CAA67086| (X98451) czcR [Ralstonia
eutropha]
Length = 225
Score = 144 bits (359), Expect = 8e-34
Identities = 83/218 (38%), Positives = 125/218 (57%), Gaps = 1/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV+ED A L L E G VD A +G GLH+A ++D I+LD+ LPGMDG
Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
V + +R+++ +TPVL LTA D + +++ GF+ GADDYL+KPFA E+ R+ R+
Sbjct: 61 TVIKSIRSKS--ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
++ L DL+ ++ V R ++L +L LM V++R + ++VW
Sbjct: 119 TSKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVW 178
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
G D++ + V I LR+ VD PFD LI T G+GY
Sbjct: 179 GVNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGY 217
>gi|5777378|emb|CAB53386.1| (AJ132741) transcriptional regulatory
protein, putative [Bordetella pertussis]
Length = 223
Score = 143 bits (358), Expect = 1e-33
Identities = 83/220 (37%), Positives = 131/220 (58%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LVIED++ + L ++L ++G+AVD+ +G L +D ++LDLNLPGM G+
Sbjct: 1 MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDKVLGALAGQPYDLLLLDLNLPGMSGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+V R+LR + Q PVL+LTARD LD+++ G D+GADDY+ KPF L E+ R+ AL RR
Sbjct: 61 DVLRQLRQDGN-QVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRR 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL--ETR 534
G +E G L ++ EVR G L L+ L +L+ LM + VVT++ +
Sbjct: 120 SGQAQPQIEVGPLVFDTVGREVRANGTRLALSVRELSVLEMLMARSGRVVTKRQIVNSLS 179
Query: 535 VWGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
W + + +++ V+++ LR ++ IQT G GY +
Sbjct: 180 AWDADFSE-NAVEVYVYRLRKRLEG--SGASIQTVRGFGYML 218
>gi|2120818|pir||S58232 PopP protein - Rhizobium leguminosarum
>gi|929822|emb|CAA62008| (X89983) FeuP [Rhizobium
leguminosarum]
Length = 223
Score = 143 bits (357), Expect = 1e-33
Identities = 86/223 (38%), Positives = 126/223 (55%), Gaps = 1/223 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RILV+ED+ ++ L D L+E G+ VD A DG G L +DAI+LD+ LP MDG+
Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
V K R R PVL+LTARD +K+ G D+GADDY+ KPF ++EV R+ AL RR
Sbjct: 61 TVLEKWRGAGRG-VPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRA 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
G + + G + + + + G L+L ++L LM VV+R +L ++
Sbjct: 120 AGHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMY 179
Query: 541 GEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 669
++ DS+++ V + LR K V LI+T G+GYRI P
Sbjct: 180 DQDFDRDSNTIEVFVGRLR----KKMGVDLIETVRGLGYRIQAP 219
>gi|4980903|gb|AAD35484.1|AE001719_10 (AE001719) response regulator
[Thermotoga maritima]
Length = 225
Score = 143 bits (357), Expect = 1e-33
Identities = 85/218 (38%), Positives = 127/218 (57%), Gaps = 1/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
VR+LV+ED D+A + + L++ VD DG G+++A+ FD ++LD+ LP DG
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 62
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
E+ + +R E+ TPVLMLTA ++ ++ G + GADDYL KPF L+E+ R+ AL RR
Sbjct: 63 EILKSMR-ESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
++ L GDL + T + R K + L +IL+ L+ VVT+++L+ +W
Sbjct: 122 SESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLW 181
Query: 541 G-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
++ SD LR HI LR VDK F +I T GIGY
Sbjct: 182 SFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGY 220
>gi|3511129 (AF060858) regulatory protein CopR [Salmonella dublin]
Length = 248
Score = 143 bits (357), Expect = 1e-33
Identities = 84/220 (38%), Positives = 129/220 (58%), Gaps = 1/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL+IEDN + L E G+ VD+A DG GLHLA+ + I+LD+ LPG+DG
Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+V R LR Q+P + LTARDS+++++ G ++GA+DYL+KPF+ E+ R+ A R+
Sbjct: 83 QVLRALR--TAHQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQH 140
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ TR+ G L+ + V R GK + L +L L +V R + + VW
Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
G +++++ V I LRA VD+PF+ LI T G+GYR+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 240
>gi|3913940|sp|O31395|IRLR_BURPS TRANSCRIPTIONAL ACTIVATOR PROTEIN
IRLR >gi|2245588 (AF005358) IrlR [Burkholderia
pseudomallei]
Length = 229
Score = 142 bits (354), Expect = 3e-33
Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 1/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL++ED + L E G D+ DGVTGLH A E+D I+LD+ LPG DG
Sbjct: 1 MRILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
V +LR TPVL LTARD + +++ G + GADDY++KPF E+ R+ ++ RRG
Sbjct: 61 TVLERLRRA--HSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRG 118
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ ++ VL DLE +L + R+G ++ L +L LM ++ R + ++VW
Sbjct: 119 QARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVW 178
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
D++ + I LR+ +D ++ LI T G+GY
Sbjct: 179 DMNFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGY 217
>gi|4455703|emb|CAB36688.1| (AL035500) putative two-component
response regulator [Mycobacterium leprae]
Length = 253
Score = 142 bits (354), Expect = 3e-33
Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 4/218 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
VRIL ++D+ + +L L G++V+ A DGV L + DA+VLD+ +P +DG+
Sbjct: 26 VRILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGL 85
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EVCR+LR+ P+L+LTARDS+ ++ G D+GADDYL KPFAL+E+ R+ AL RR
Sbjct: 86 EVCRQLRSTG-DDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRT 144
Query: 361 K---GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
K ++ + DL + T EV R + + L T +L+ L+ V+TR +
Sbjct: 145 KPDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILE 204
Query: 532 RVWGEELPDS-DSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
VWG + P S ++L V++ LR + + LI T G+GY
Sbjct: 205 EVWGFDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGY 246
>gi|2598275|emb|CAA73687| (Y13235) FeuP protein [Brucella suis]
Length = 229
Score = 141 bits (353), Expect = 4e-33
Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL++ED+ D+ L + + G+ VD A DG G +L +DA+VLD+ LP MDGI
Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
V + R R PVLMLTARD +K+ G D+GADDY+ KPF ++EV RL AL RR
Sbjct: 61 SVVERWRRSGRT-IPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRA 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
G + G L + T + G +L+L ++L +M VV+R +L ++
Sbjct: 120 AGHASSEFVCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLY 179
Query: 541 GEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
++ DS+++ V + LR K V LI+T G+GYR+
Sbjct: 180 DQDFDRDSNTIEVFVGRLR----KKMGVDLIETVRGMGYRM 216
>gi|5921515|emb|CAB56468.1| (Y14018) czrR protein [Pseudomonas
aeruginosa]
Length = 224
Score = 140 bits (349), Expect = 1e-32
Identities = 83/218 (38%), Positives = 120/218 (54%), Gaps = 2/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL+IED A L L E G+ VD A DG+ GLH+A+ H ++ ++LD+NLPG+DG
Sbjct: 1 MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGW 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 357
++ R+LR R V+MLT L +K+ G D GADD+++KPF E+ R+ +L RR
Sbjct: 61 DLLRRLRE--RSSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRH 118
Query: 358 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+ VL DLE + R + L +L LM V+TR + + +
Sbjct: 119 DQAPMQDVLRVADLELDASRHRAFRGRVRINLTTKEFALLHLLMRRNGDVITRTQIISLI 178
Query: 538 WGEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
W DS+ + V I LRA +D FD+ LI T G+GY
Sbjct: 179 WDMNFDNDSNVVEVAICRLRAKIDDGFDLKLIHTIRGVGY 218
>gi|6117972|gb|AAF03932.1|AF139908_2 (AF139908) LisR [Listeria
monocytogenes]
Length = 226
Score = 140 bits (349), Expect = 1e-32
Identities = 85/221 (38%), Positives = 134/221 (60%), Gaps = 6/221 (2%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL++ED ++A + L+ + A DG GL LA+ E+DAI+LDL LP ++G+E
Sbjct: 3 RILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVE 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VCR++R KQTP++M+TARD L + +GADDY++KPFA++E+ RL +L RR +
Sbjct: 63 VCRRVRQV--KQTPIIMITARDLLSIVYPDWITGADDYIVKPFAIEELLARLRSLLRRVE 120
Query: 364 GLQTRVLETGDLEYNLDTLE-----VRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 528
+ +T L+Y +E V+R +++ L ++L LME V+TR+ L
Sbjct: 121 NAEQSAKQT-TLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLL 179
Query: 529 TRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
+VWG E +++ + V++ LR +D P + IQT G GY + T
Sbjct: 180 NKVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVMRT 226
>gi|1001644|dbj|BAA10375| (D64002) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 224
Score = 139 bits (348), Expect = 2e-32
Identities = 76/217 (35%), Positives = 125/217 (57%), Gaps = 1/217 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
R+LV+E+ +A + L+ G+ V A DG+ G A D I+++ LPGM G+E
Sbjct: 4 RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+CR+LR E + P++++TA+D ++ ++ G D+GADDY++KPF E R+ RR
Sbjct: 64 LCRRLR-EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTH 122
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
VL+ DL +N T E++R +L+ L ++L L+ V+TR+ + RVWG
Sbjct: 123 TTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWG 182
Query: 544 EE-LPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
+ + DS+ + V+I LR ++ + LIQT G+GY
Sbjct: 183 YDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220
>gi|2500750|sp|P76340|YEDW_ECOLI PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN YEDW >gi|1788280 (AE000288) putative 2-component
transcriptional regulator [Escherichia coli]
Length = 239
Score = 138 bits (345), Expect = 4e-32
Identities = 82/218 (37%), Positives = 125/218 (56%), Gaps = 1/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL+IEDN + L E G+ +D +DG GL+LA+ ++ I+LD+ LPGMDG
Sbjct: 17 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++ + LR KQTPV+ LTARDS+D+++ G DSGA+DYL+KPF+ E+ R+ A R+
Sbjct: 77 QILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 134
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
L + LE L + + V R + L ++L L ++ R + + +W
Sbjct: 135 HALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 193
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
G D++++ V I LRA VD PF LI T G+GY
Sbjct: 194 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 232
>gi|1736638|dbj|BAA15796| (D90835) Transcriptional activator protein
CopR. [Escherichia coli]
Length = 260
Score = 138 bits (345), Expect = 4e-32
Identities = 82/218 (37%), Positives = 125/218 (56%), Gaps = 1/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL+IEDN + L E G+ +D +DG GL+LA+ ++ I+LD+ LPGMDG
Sbjct: 38 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++ + LR KQTPV+ LTARDS+D+++ G DSGA+DYL+KPF+ E+ R+ A R+
Sbjct: 98 QILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 155
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
L + LE L + + V R + L ++L L ++ R + + +W
Sbjct: 156 HALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 214
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
G D++++ V I LRA VD PF LI T G+GY
Sbjct: 215 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 253
>gi|4206626 (AF067954) putative transcriptional regulator responder
SilR [Salmonella typhimurium]
Length = 228
Score = 138 bits (344), Expect = 5e-32
Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 4/225 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED+ L L E G VD A +G+TG HLA+ E+D ++LD+ LP ++G
Sbjct: 1 MKILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++ R LR+ A K PVL+LTA ++++++ G + GADDYL+KPFA E+ R+ L RRG
Sbjct: 61 DIIRMLRS-AGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119
Query: 361 KGLQTR-VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE-TR 534
+ T L+ DL +L + +V R G + L +L+ + V+ R +
Sbjct: 120 NTMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAFFM 179
Query: 535 VWGEEL--PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 675
VW E D++++ V + LRA +D + L QT G+GY + PDA
Sbjct: 180 VWVHEFLTADTNAIDVAVKRLRAKIDNDYGTKLNQTVRGVGYMLEIPDA 228
>gi|6045171|dbj|BAA85309.1| (AB033420) ORFR [Pseudomonas syringae]
Length = 228
Score = 137 bits (342), Expect = 8e-32
Identities = 82/224 (36%), Positives = 124/224 (54%), Gaps = 4/224 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+++LV ED L L E G VD G + A+ +D ++LD+ +PG+DG
Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EV R+LR A + PVL LTARD +D+++ G + GADDYL+KPFA E+ R+ L RRG
Sbjct: 61 EVIRRLRT-AGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRG 119
Query: 361 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+QT L+ GDL+ +L R GK + L +L+ LM V+++ + +
Sbjct: 120 SSSLPVQTS-LQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIAS 178
Query: 532 RVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
+VW D++ + V I LRA +D F+ L+ T G+GY + D
Sbjct: 179 QVWDMNFDSDTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLDAQD 226
>gi|2500749|sp|P77380|YLCA_ECOLI PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN YLCA >gi|1778486 (U82598) CopR homolog
[Escherichia coli] >gi|1786784 (AE000162) putative
2-component transcriptional regulator [Escherichia coli]
>gi|4062195|dbj|BAA35205| (D90699) Transcriptional
activator protein copR. [Escherichia coli]
>gi|4062201|dbj|BAA35211| (D90700) Transcriptional
activator protein copR. [Escherichia coli]
Length = 227
Score = 137 bits (342), Expect = 8e-32
Identities = 76/224 (33%), Positives = 127/224 (55%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+++L++ED L L E G VD A +G+ G HLA+ ++D I+LD+ LP ++G
Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++ R LR+ A K P+L+LTA ++++++ G + GADDYL+KPFA E+ R+ L RRG
Sbjct: 61 DIVRMLRS-ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119
Query: 361 KG-LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+ + DL +L + +V R G + L +L+ + V+ R + ++V
Sbjct: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179
Query: 538 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
W D++++ V + LR +D F+ LIQT G+GY + PD
Sbjct: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225
>gi|1723888|sp|P52076|YGIX_ECOLI PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN YGIX >gi|882555 (U28377) ORF_o219 [Escherichia
coli] >gi|1789402 (AE000384) putative 2-component
transcriptional regulator [Escherichia coli]
Length = 219
Score = 137 bits (342), Expect = 8e-32
Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL+IED+ I + L + G +VD+ G G +DA++LDL LPGMDG
Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++ R+ R + +++ PVL+LTARD+L ++ G GADDYL KPFAL EV RL AL RR
Sbjct: 61 DILREWREKGQRE-PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 537
G + L G++ + G+ L L P +L+ LM V++R+ +E ++
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179
Query: 538 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
W EE+ S+++ VH+H LR + F I+T HGIGY +
Sbjct: 180 TWDEEV-TSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216
>gi|6174678|dbj|BAA85986.1| (AB024522) gcrR [Streptococcus mutans]
Length = 230
Score = 136 bits (338), Expect = 2e-31
Identities = 85/218 (38%), Positives = 129/218 (58%), Gaps = 6/218 (2%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
IL+IED +A + L+ G+ V+ DG +GL A+ +FD I+LDL LP MDG EV
Sbjct: 5 ILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLMLPEMDGYEV 64
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R+L+ E K T V+++TARDS+ + +TG D GAD Y++KPFA++E+ R+ A+ RR
Sbjct: 65 IRRLQLE--KTTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDI 122
Query: 367 LQTRVLETGDLEYNLDTLEVR-----RRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ + D Y L+V R G+ + L +L AL+E V+TR++L
Sbjct: 123 EKAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLA 182
Query: 532 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
RVW ++ +++ + V+I LR +D P IQT G+GY I
Sbjct: 183 RVWKYDQEAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYII 226
>gi|543777|sp|Q04942|AFQ1_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN
AFSQ1 >gi|322268|pir||A45270 sensory response regulator
homolog AfsQ1 - Streptomyces coelicolor
>gi|216983|dbj|BAA01502| (D10654) AfsQ1 [Streptomyces
coelicolor]
Length = 225
Score = 135 bits (337), Expect = 3e-31
Identities = 86/221 (38%), Positives = 123/221 (54%), Gaps = 2/221 (0%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+L+IED+ I L L +GH V AA G GL L D IVLD+ LPG+DG EV
Sbjct: 4 LLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
CR++R Q P+++LTAR+ + + G +SGADDY++KP + ++ R+ A+ RRG+
Sbjct: 64 CRRIRRT--DQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121
Query: 367 LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGE 546
T G L + + V + G+ LQL PT L++L L ++RQ L VW
Sbjct: 122 ESTDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEH 181
Query: 547 E-LPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRIATP 669
+ L DS + + LRA V D P LI+T G+GYR+ P
Sbjct: 182 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224
>gi|1834375|emb|CAA70859| (Y09666) RagA [Bradyrhizobium japonicum]
Length = 226
Score = 134 bits (334), Expect = 7e-31
Identities = 82/217 (37%), Positives = 124/217 (56%), Gaps = 2/217 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL+IED+++ A + L +RG V +A DGV GL A DA+++D LPGMDG+
Sbjct: 3 RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMDGLA 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V LR + + +TPVL+L+A ++D+++ G G DDYL KPFA+ E+ R+ AL RR
Sbjct: 63 VIEALRKD-QVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPT 121
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
+ +L G LE +L RR + L+L P ++L+ +M ++TR L VW
Sbjct: 122 DSRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWN 181
Query: 544 EEL--PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
+ ++ + VH+ LR VD P +V LI G G+
Sbjct: 182 YKFVPATTNLIDVHMGRLRHKVDGPGEVQLIHNVRGSGF 220
>gi|1208484|dbj|BAA10652| (D64004) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 241
Score = 134 bits (333), Expect = 9e-31
Identities = 88/217 (40%), Positives = 126/217 (57%), Gaps = 9/217 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL+I+D+ I+ + LE G+ V A DG+ G LAV + D I+LDL LP +DG
Sbjct: 3 RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 184 VCRKLRNEARK-QTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
VC++LR + R PVLMLTA + +K+ GFDSGADDYL KPF ++E+ R+ AL RR
Sbjct: 63 VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122
Query: 361 KGL-----QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 525
+ + +L G L + E GK ++L ++L L++ V+ D+
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182
Query: 526 ETRVWGEELPDSD--SLRVHIHGLRAVVD-KPFDVPLIQTRHGIGY 654
VWG E PD D ++RVHI LR ++ P I+T +G GY
Sbjct: 183 LREVWGYE-PDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227
>gi|2815358|emb|CAA16481| (AL021530) puative turgor pressure
regulator [Streptomyces coelicolor]
Length = 227
Score = 134 bits (333), Expect = 9e-31
Identities = 86/218 (39%), Positives = 124/218 (56%), Gaps = 6/218 (2%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
R+LVI+D I L L+ R + VD A DG T L LA D +VLDL LP MDG+E
Sbjct: 3 RVLVIDDEPQIVRALVINLKARHYEVDAAHDGATALQLAAARHPDVVVLDLGLPDMDGVE 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V R LR R P+L+L+AR S D K+ D+GADDY+ KPF + E+ RL A RR +
Sbjct: 63 VIRGLRGWTR--VPILVLSARHSSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAE 120
Query: 364 ----GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
G V++T + +L +V R G+ ++L PT +L+ L+ T +V+++ L
Sbjct: 121 PVPGGEDEVVVDTPEFTVDLAAKKVNRGGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQ 180
Query: 532 RVWGEEL-PDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYR 657
VWG +++ LRV++ LR ++ P T G+GYR
Sbjct: 181 EVWGPSYGTETNYLRVYMAQLRRKLEADPAHPRHFITEPGMGYR 224
>gi|6531667|gb|AAF15533.1|AF196490_3 (AF196490) phosphate regulon
response regulator PhoB [Caulobacter crescentus]
Length = 230
Score = 133 bits (332), Expect = 1e-30
Identities = 79/218 (36%), Positives = 125/218 (57%), Gaps = 3/218 (1%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+LV+ED +A L L++ G+ V A DG L +A D ++LD LP + GIEV
Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEV 64
Query: 187 CRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
CR+LR A + P++MLTAR +++ G D+GADDY++KPF++ E+ R+ A+ RR +
Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124
Query: 364 -GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
GL + GD+ + V+R GK + L PT ++L LM+ V +R+ L VW
Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
G ++ ++ ++ VHI LR ++ D I+T GY +
Sbjct: 185 GSDVYVEARTVDVHIGRLRKELNGTTDADPIRTVRSAGYSL 225
>gi|3599371 (AF082668) CsrR [Streptococcus pyogenes]
Length = 228
Score = 132 bits (330), Expect = 2e-30
Identities = 85/219 (38%), Positives = 126/219 (56%), Gaps = 5/219 (2%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+IL+IED ++A + L+ G+ V +G GL A+ EFD I+LDL LP MDG E
Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V R+L+ E K T ++M+TARDS+ + + G D GADDY++KPFA++E+ R+ A+ RR
Sbjct: 64 VTRRLQTE--KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQD 121
Query: 364 -GLQTRVLETG---DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ +V G DL N V R + L +L LM V+TR++L +
Sbjct: 122 IESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLS 181
Query: 532 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
VW +E +++ + V+I LR +D P IQT G+GY I
Sbjct: 182 NVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225
>gi|6458493|gb|AAF10359.1|AE001933_3 (AE001933) response regulator,
OmpR/PhoB family [Deinococcus radiodurans]
Length = 222
Score = 131 bits (327), Expect = 5e-30
Identities = 82/222 (36%), Positives = 123/222 (54%), Gaps = 1/222 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL+IEDN DI + LE+ G+ V A DG+TGL A + D ++LDL LP DG E
Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFDGAE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V R+LR + P+++LTA D++D K+ ++GADDY+ KPF +E+ R+ R +
Sbjct: 64 VARRLRKTS--SVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ 121
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
V+ G LE + G ++L+P +L L V +RQ++E VW
Sbjct: 122 --HGEVITIGALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN 179
Query: 544 EELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 669
ELP +S+ + VH+ +RA + +I+T GIGY + TP
Sbjct: 180 GELPSNSNVVDVHMANMRAKLRDLDGYGVIRTVRGIGYALKTP 222
>gi|1652523|dbj|BAA17444| (D90906) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 234
Score = 131 bits (327), Expect = 5e-30
Identities = 76/216 (35%), Positives = 131/216 (60%), Gaps = 11/216 (5%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
IL+++D + + L L +GH +D A G TGL +A+ ++D ++LD LP + G+E+
Sbjct: 4 ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
CR++R TPVL LTA+D+LD+++ G D+G DDYLIKPF L+E+ R+ AL RR
Sbjct: 64 CRQIRILGHS-TPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQSH 122
Query: 367 LQTRVLETGDLEYNL-----DTLEVRR-----RGKLLQLNPTGLKILQALMEATPAVVTR 516
+T G ++ NL +L+V +G+ + L+ + +L ++A +++
Sbjct: 123 GETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSH 182
Query: 517 QDLETRVW-GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
+++ + +W GE P S+ L + LR +++P LI + +G GY
Sbjct: 183 EEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGY 229
>gi|6002654|gb|AAF00081.1|AF095713_1 (AF095713) response regulator
MucR [Streptococcus pyogenes]
Length = 228
Score = 131 bits (326), Expect = 6e-30
Identities = 85/219 (38%), Positives = 126/219 (56%), Gaps = 5/219 (2%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+IL+IED ++A + L+ G+ V +G GL A+ EFD I+LDL LP MDG E
Sbjct: 4 KILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMDGFE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V R+L+ E K T ++M+TARDS+ + + G D GADDY++KPFA++E+ R+ A+ RR
Sbjct: 64 VTRRLQTE--KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQD 121
Query: 364 -GLQTRVLETG---DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ +V G DL N V R + L +L LM V+TR++L +
Sbjct: 122 IESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLS 181
Query: 532 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
VW +E +++ + V+I LR +D P IQT G+GY I
Sbjct: 182 NVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225
>gi|2072713|emb|CAB08347| (Z95121) mtrA [Mycobacterium tuberculosis]
Length = 228
Score = 130 bits (324), Expect = 1e-29
Identities = 81/222 (36%), Positives = 119/222 (53%), Gaps = 2/222 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV++D++ +A L L G DG L D ++LDL LPGM+GI+
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VCR LR A P++MLTA+ + + G +SGADDY++KPF +E+ R+ A RR
Sbjct: 67 VCRVLR--ADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 124
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
+L D+E ++ +V R G+ + L P +L AL V TR L +VWG
Sbjct: 125 DEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG 184
Query: 544 EELP-DSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 669
P D+ + VH+ LRA V+K P + ++ T G+GY+ P
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGPP 228
>gi|509815 (U01971) MtrA [Mycobacterium tuberculosis]
Length = 225
Score = 130 bits (324), Expect = 1e-29
Identities = 81/222 (36%), Positives = 119/222 (53%), Gaps = 2/222 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV++D++ +A L L G DG L D ++LDL LPGM+GI+
Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VCR LR A P++MLTA+ + + G +SGADDY++KPF +E+ R+ A RR
Sbjct: 64 VCRVLR--ADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 121
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
+L D+E ++ +V R G+ + L P +L AL V TR L +VWG
Sbjct: 122 DEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG 181
Query: 544 EELP-DSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 669
P D+ + VH+ LRA V+K P + ++ T G+GY+ P
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGPP 225
>gi|729232|sp|Q03756|CUTR_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN
CUTR (DEFECTIVE MELC1 SUPPRESSOR PROTEIN)
>gi|98986|pir||S15274 cutR protein - Streptomyces
lividans >gi|581687|emb|CAA41599| (X58793) cutR protein
[Streptomyces lividans] >gi|2815348|emb|CAA16471|
(AL021530) two-component regulator CutR [Streptomyces
coelicolor]
Length = 217
Score = 130 bits (324), Expect = 1e-29
Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 1/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV+ED +A + L AVD DG L V+++D +VLD +LP + G
Sbjct: 1 MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+VCRK+ E T VLMLTA + +++ G + GADDYL KPFA E+ R+ AL RR
Sbjct: 61 DVCRKIV-ELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRT 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
VLE ++ + + EV R GK +QL P +L+ LM + AVV+ + L + W
Sbjct: 120 SVPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAW 179
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
E P ++ +RV + LR + +P P+I T G GYRI
Sbjct: 180 DENTDPFTNVVRVTVMTLRRKLGEP---PVIVTVPGSGYRI 217
>gi|4539212|emb|CAB39870.1| (AL049497) putative two component
response regulator [Streptomyces coelicolor]
Length = 221
Score = 129 bits (322), Expect = 2e-29
Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 2/221 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL++ED IA+ + L G ADG A+ FD +VLD+ LPG DG
Sbjct: 3 RILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGLPGRDGFT 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLN-ALSRRG 360
V R+LR EAR TPV++LTARDS+ + + G + GADD++ KPF +E+ R+ L
Sbjct: 63 VLRELR-EARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ + VL +G L +L T R G+ + L +L+ + V++R+ + + VW
Sbjct: 122 RAPEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
G + P S+ + V++ LR K ++T G+GYR+ T
Sbjct: 182 GYDFDPGSNIVDVYVRALR----KKLGARQVETVRGMGYRLPT 220
>gi|1055347 (U38917) response regulator PhoB [Synechococcus WH7803]
Length = 234
Score = 129 bits (321), Expect = 2e-29
Identities = 81/218 (37%), Positives = 128/218 (58%), Gaps = 11/218 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHE---FDAIVLDLNLPGMD 174
++LV+ED+ I + + L G V +G + L D +VLDL LPG+
Sbjct: 5 KLLVVEDDDSIRETVEEALRAEGFEVKSCGNGADAMALLSAPNTEGVDLLVLDLMLPGLG 64
Query: 175 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 354
G+++CR+LR + TPVL+++ARDS +++ G + GADDYL+KPF L+E+ R AL R
Sbjct: 65 GLDLCRQLR-KLNNHTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLR 123
Query: 355 RGKGLQT------RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 516
R + + + +V++TG+L V R G+ L L+P KIL+ L+ V +R
Sbjct: 124 RSQQIASVPSEDRQVVQTGNLCLYAQECRVTRDGEDLTLSPKEYKILELLIRNPKRVWSR 183
Query: 517 QDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYR 657
L R+WG + + D+ ++ VHI LR + ++P I+T G GYR
Sbjct: 184 DQLLERIWGIDFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYR 232
>gi|387603 (M95680) putative [Fremyella diplosiphon]
Length = 651
Score = 129 bits (320), Expect = 3e-29
Identities = 78/223 (34%), Positives = 118/223 (51%), Gaps = 4/223 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED+ + L L + VD DG G E+D I+LD+ LP +DGI
Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+C++ R + P+L+LTA+D++ K+ G D+GADDY++KPF E+ R+ AL RRG
Sbjct: 61 SLCKRFRAQGYT-VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRG 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+L GDL N T EV G L L +L+ L+ V + ++L ++W
Sbjct: 120 SNNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179
Query: 541 -GEELPDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIATP 669
E+ P ++R H+ LR P D I T HG GY + P
Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHD--FIATMHGRGYYLKAP 224
Score = 55.0 bits (130), Expect = 6e-07
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
++++++D+ D L L+ G V AD + DA+VLD+N+P ++G E
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRL 339
+C+ LR++ ++ PVL L+ + F G DDYL KP E+ R+
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI 639
>gi|417621|sp|Q01473|RCAC_FREDI RCAC PROTEIN >gi|282227|pir||S27576
rcaC protein - Calothrix sp >gi|423999|pir||A47210
complementary chromatic adaptation protein RcaC -
Fremyella diplosiphon
Length = 632
Score = 129 bits (320), Expect = 3e-29
Identities = 78/223 (34%), Positives = 118/223 (51%), Gaps = 4/223 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED+ + L L + VD DG G E+D I+LD+ LP +DGI
Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+C++ R + P+L+LTA+D++ K+ G D+GADDY++KPF E+ R+ AL RRG
Sbjct: 61 SLCKRFRAQGYT-VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRG 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+L GDL N T EV G L L +L+ L+ V + ++L ++W
Sbjct: 120 SNNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179
Query: 541 -GEELPDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIATP 669
E+ P ++R H+ LR P D I T HG GY + P
Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHD--FIATMHGRGYYLKAP 224
Score = 54.7 bits (129), Expect = 8e-07
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
++++++D+ D L L+ G V AD + DA+VLD+N+P ++G E
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKP 309
+C+ LR++ ++ PVL L+ + F G DDYL KP
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKP 629
>gi|2769532|emb|CAA11074| (AJ223073) phosphate regulatory protein
[Bradyrhizobium japonicum]
Length = 235
Score = 127 bits (317), Expect = 7e-29
Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 3/219 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RI+V+ED + L LE G+ V+ G H D IVLD LPG+ GIE
Sbjct: 4 RIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLSGIE 63
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+CR+LR KQ P++MLTAR ++ G +GADDY++KPF++ E+ R+ L RR
Sbjct: 64 LCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123
Query: 361 KGLQ-TRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+ VL GD+E + D V R G+ + L PT ++L+ +E V +R+ L V
Sbjct: 124 SPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183
Query: 538 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
WG ++ D ++ VHI LR +++ + I+T G GY +
Sbjct: 184 WGRDIYIDERTVDVHIGRLRKLLNLGREQDPIRTVRGAGYAL 225
>gi|4982229|gb|AAD36722.1|AE001807_13 (AE001807) response regulator
DrrA [Thermotoga maritima]
Length = 247
Score = 126 bits (313), Expect = 2e-28
Identities = 79/222 (35%), Positives = 131/222 (58%), Gaps = 9/222 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ I +G L + G+ V A DG L +A + D ++D+ LPG+DG E
Sbjct: 13 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 72
Query: 184 VCRKLRN-EARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 357
+ RK+R+ E K TPV+ L+A+ +K+ G + GADDY+ KPF+++E+ R+ A+ RR
Sbjct: 73 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 132
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
K + + + DLE +++ EV+ RGK + L P ++L+ L E V +R
Sbjct: 133 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 192
Query: 523 LETRVWG-EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 669
L ++WG + D+ ++ VHI LR +++ P + I T G GY+ P
Sbjct: 193 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDP 243
>gi|1575577 (U67196) DNA-binding response regulator [Thermotoga
maritima]
Length = 239
Score = 126 bits (313), Expect = 2e-28
Identities = 79/222 (35%), Positives = 131/222 (58%), Gaps = 9/222 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ I +G L + G+ V A DG L +A + D ++D+ LPG+DG E
Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64
Query: 184 VCRKLRN-EARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 357
+ RK+R+ E K TPV+ L+A+ +K+ G + GADDY+ KPF+++E+ R+ A+ RR
Sbjct: 65 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
K + + + DLE +++ EV+ RGK + L P ++L+ L E V +R
Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184
Query: 523 LETRVWG-EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 669
L ++WG + D+ ++ VHI LR +++ P + I T G GY+ P
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDP 235
>gi|4481749|gb|AAD21216| (AF007865) BacR [Bacillus licheniformis]
Length = 238
Score = 126 bits (313), Expect = 2e-28
Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 9/219 (4%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+ + +D +I L YL+ + VD A DG L L + + ++LD+ +P +DGI
Sbjct: 4 IRVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 357
EVCR++RN P+LMLTA+D +K+ G GADDY+ KPF++ EV R+ A+ RR
Sbjct: 64 EVCRRMRNHT--NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRF 121
Query: 358 ------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 519
+ + +++ L +L T V G+ + L ++L+ V T+
Sbjct: 122 LVLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKT 181
Query: 520 DLETRVWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYR 657
L W ++ + D +++ VHI LR ++ P D IQT GIGY+
Sbjct: 182 QLFRNAWSDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYK 229
>gi|2687343|emb|CAA15884| (AL020958) two-component system regulator
[Streptomyces coelicolor]
Length = 228
Score = 125 bits (312), Expect = 3e-28
Identities = 80/225 (35%), Positives = 122/225 (53%), Gaps = 8/225 (3%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAV--VHEFDAIVLDLNLPGMD 174
+R+L++ED++ +AA L L G V A G L V V F ++LDL LP D
Sbjct: 1 MRLLLVEDDNHVAAALSAILARHGFDVTHARSGEEALQALVPEVDGFGVVLLDLGLPDQD 60
Query: 175 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 354
G EVC K+R R TPV+M+TAR + +++ G + GADDY++KP+ E+ R++A+SR
Sbjct: 61 GYEVCGKIRK--RTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSR 118
Query: 355 R-----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 519
R G V+ G + L T +V G ++QL +L L + V R+
Sbjct: 119 RTAHEDATGSTETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRRE 178
Query: 520 DLETRVWGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 675
+ + VW + +L VH+ LR+ + P LI+T G+GYR+ P A
Sbjct: 179 QIISEVWRTSWEGTGRTLEVHVASLRSKLHMP---ALIETVRGVGYRLVAPTA 228
>gi|6466297|gb|AAF12879.1|AF022186_1 (AF022186) unknown [Cyanidium
caldarium]
Length = 249
Score = 125 bits (311), Expect = 3e-28
Identities = 75/216 (34%), Positives = 129/216 (59%), Gaps = 18/216 (8%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+L+++D ++I L L G++V A +G L + H D I+LD+ +P +DG V
Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYGV 73
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
C+++R E+ P++MLTA + + +K+TG + GADDY+IKPF+ +E+E R+ ++ RR
Sbjct: 74 CQEIRKES--DIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR--- 128
Query: 367 LQTR-----------VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 513
+QTR + +TG L +L+ ++ + +L++L +L+ L+ + +
Sbjct: 129 IQTRNAKLKPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELLVSQSGKAFS 188
Query: 514 RQDLETRVWG------EELPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGY 654
R + VWG E + D+ + VHI LRA + D P + LI T G GY
Sbjct: 189 RSKILKEVWGYKLSKHEPIADTRIVDVHISRLRAKLEDDPTNPTLILTARGTGY 242
>gi|135529|sp|P22104|TCTD_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN
TCTD >gi|96863|pir||A33861 trans-activating
transcriptional regulatory protein tctD - Salmonella
typhimurium >gi|295218 (M28368) membrane associated
regulatory protein [Salmonella typhimurium]
Length = 224
Score = 125 bits (311), Expect = 3e-28
Identities = 87/224 (38%), Positives = 129/224 (56%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+ EDN ++A L L + G AVD DG+ HL + VLD+N+PGMDG+
Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60
Query: 181 EVCRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 357
EV ++LR R QT PVL+LTAR ++ +++ G + GADDYL KPF L+E++ RL AL RR
Sbjct: 61 EVVQRLRK--RGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
Query: 358 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
G V + G+L ++ D +G+ L L P +L LM V+RQ L +V
Sbjct: 119 SAGQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQV 177
Query: 538 WG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
+ + +S+ ++IH LR + + DV I T G+GY + D
Sbjct: 178 FSLNDEVSPESIELYIHRLRKKL-QGSDV-RITTLRGLGYVLERGD 221
>gi|1314043|emb|CAA97378| (Z73101) hypothetical protein Rv0903c
[Mycobacterium tuberculosis]
Length = 236
Score = 125 bits (310), Expect = 4e-28
Identities = 81/217 (37%), Positives = 118/217 (54%), Gaps = 4/217 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
R+LV++D+SD+ A+L L G V A DG L A + DAIVLD+N+P +DG+
Sbjct: 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V LR PV +L+AR S+D+++ G ++GADDYL+KPF L E+ R+ AL RR
Sbjct: 72 VVTALR-AMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 130
Query: 364 GLQTRVLET---GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
T ET G LE ++ R G + L +L L E AV++R L
Sbjct: 131 STATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLEL 190
Query: 535 VWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
VWG + D++ + V I LR ++ L+ T G+G+
Sbjct: 191 VWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGF 231
>gi|1073570|pir||S52257 pcoR protein - Escherichia coli
>gi|619132|emb|CAA58529| (X83541) pcoR [Escherichia
coli]
Length = 226
Score = 125 bits (310), Expect = 4e-28
Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 1/217 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL++ED L L E G+ D +G GL A ++D I+LD+ LP +DG +
Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+ LR E+ + PVL LTA+D++ +K+ G + GADDYLIKPF E+ R+ L RR +
Sbjct: 63 IISALR-ESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
V D+ ++ V R GK + L +L+ L++ T V+ R + + VW
Sbjct: 122 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181
Query: 544 EEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
D++ + V + LR+ +D F+ LI T G GY
Sbjct: 182 MNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGY 219
>gi|538802|pir||B40656 regulatory protein pmrA - Salmonella
typhimurium (strain LT2)
Length = 222
Score = 124 bits (309), Expect = 6e-28
Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED++ + L + G+A D + H + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++R + + PVL+LTARD+L++++TG D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLTRIRQK-KYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 537
L G+L N+ + R G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 538 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
W E P +++L VHIH LR V K I+T G GY + +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----SRIRTVRGFGYMLVATE 220
>gi|1869995|emb|CAB06846| (Z92539) hypothetical protein Rv1033c
[Mycobacterium tuberculosis] >gi|2979514|gb|AAC06144.1|
(U88959) response regulator homolog TrcR [Mycobacterium
tuberculosis]
Length = 257
Score = 124 bits (309), Expect = 6e-28
Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 4/224 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+++D + + L G V+ A DG + D +VLD+ LP +DG+
Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 91
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
E+ R++R E+ TP L LTARDS+ +++TG SGADDY+ KPF+L+E+ RL L RR
Sbjct: 92 EILRRVR-ESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 150
Query: 361 KGLQ---TRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
L+ L GDL + + EV R G + L+ T ++L+ LM ++R ++
Sbjct: 151 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 210
Query: 532 RVWGEELPDSDSL-RVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
RVW + S+ ++I LR +D + P+I T GIGY + P+
Sbjct: 211 RVWNYDFAGRTSIVDLYISYLRKKIDSDRE-PMIHTVRGIGYMLRPPE 257
>gi|4726009|emb|CAB41738.1| (AL049731) putative two component
response regulator [Streptomyces coelicolor]
Length = 213
Score = 124 bits (308), Expect = 8e-28
Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
Frame = +1
Query: 76 AVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSL 255
A D A DG T L L V+ +D VLD ++PG G E+ ++ P+LMLTA D L
Sbjct: 8 AADIAGDGDTALELLSVNAYDIAVLDRDIPGPSGDEIAERIVASGSGM-PILMLTAADRL 66
Query: 256 DNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKGLQTRVLETGDLEYNLDTLEVRRR 435
D+K +GF GADDYL KPF LQE+ +RL AL RR + V E L + EV R
Sbjct: 67 DDKASGFGLGADDYLTKPFELQELALRLRALDRRRAHSRPPVREIAGLRLDPFRREVYRG 126
Query: 436 GKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEEL-PDSDSLRVHIHGLRAVVDKP 612
G+ + L +L+ L+ A VV+ ++L R W E P ++++R+ + LR + +P
Sbjct: 127 GRYVALTRKQFAVLEVLVAAEGGVVSAEELLERAWDENADPFTNAVRITVSALRKRLGEP 186
Query: 613 FDVPLIQTRHGIGYRIAT 666
+I T G+GYRI T
Sbjct: 187 ---GIIATVPGVGYRIDT 201
>gi|1736640|dbj|BAA15797| (D90836) Transcriptional activator protein
CopR. [Escherichia coli]
Length = 238
Score = 124 bits (308), Expect = 8e-28
Identities = 74/202 (36%), Positives = 116/202 (56%), Gaps = 1/202 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL+IEDN + L E G+ +D +DG GL+LA+ ++ I+LD+ LPGMDG
Sbjct: 38 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++ + LR KQTPV+ LTARDS+D+++ G DSGA+DYL+KPF+ E+ R+ A R+
Sbjct: 98 QILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 155
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
L + LE L + + V R + L ++L L ++ R + + +W
Sbjct: 156 HALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 214
Query: 541 GEEL-PDSDSLRVHIHGLRAVVD 606
G D++++ V I LRA VD
Sbjct: 215 GINFDSDTNTVDVAIRRLRAKVD 237
>gi|1731207|sp|Q11156|RGX3_MYCTU SENSORY TRANSDUCTION PROTEIN REGX3
>gi|1449289|emb|CAB00952| (Z77162) regX3 [Mycobacterium
tuberculosis] >gi|2190480|emb|CAA73958| (Y13628) RegX3
[Mycobacterium tuberculosis]
Length = 227
Score = 123 bits (307), Expect = 1e-27
Identities = 77/218 (35%), Positives = 123/218 (56%), Gaps = 6/218 (2%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+L++ED +A L L + G DG L D ++LDL LPGM G +V
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 360
C++LR AR PV+M+TARDS +K+ G + GADDY+ KP++ +E+ R+ A+ RRG
Sbjct: 64 CKQLR--ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121
Query: 361 --KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+ VLE+G + +++ V G + L +L+ LM + V+TR L R
Sbjct: 122 DDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 181
Query: 535 VWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRI 660
VWG + + D+ +L VH+ LR+ ++ P + + T G+GY++
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225
>gi|6685724|sp|Q52990|PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|152404 (M96261) phosphate
regulatory protein [Sinorhizobium meliloti]
Length = 227
Score = 123 bits (306), Expect = 1e-27
Identities = 75/219 (34%), Positives = 121/219 (55%), Gaps = 3/219 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+I V+ED ++ L LE G VD G D ++LD LPG+ GIE
Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+CR+LR ++ P++MLTAR ++ G +GADDY++KPF+ E+ R+ A+ RR
Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123
Query: 361 K-GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
K + + +L GD+E + +T V RR + ++L PT ++L+ LM + V +R L V
Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183
Query: 538 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
WG ++ D ++ VH+ LR ++ +I+T G GY +
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSL 225
>gi|1575690 (U70379) response regulator [Synechococcus PCC7942]
Length = 223
Score = 123 bits (305), Expect = 2e-27
Identities = 76/220 (34%), Positives = 126/220 (56%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L++ED D+ L L + ++VD+ +G + + + A+VLD +PG G+
Sbjct: 1 MRLLLLEDEPDLGHALHKALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGCSGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
E+C++LR +A+ TPVL+LTARD L + + G D+GADDYL+KPF L E+ R+ AL RR
Sbjct: 61 EICQRLR-QAQDSTPVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRS 119
Query: 361 KGLQTRVLETG-DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
QT +L+ G L+ T++V + L ++L+ALM +++R L ++
Sbjct: 120 PQTQTPLLQVGVRLDPAQATVQVDDYSP-MPLTAREFQLLEALMHHPGQILSRDQLLDQL 178
Query: 538 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
W + P S+ + + LR + LI+T +G GYR+
Sbjct: 179 WPMDAEPSSNVVAAQVRLLRRKLATYQADLLIETVYGFGYRL 220
>gi|2190436|emb|CAA73956| (Y13627) RegX3 [Mycobacterium bovis BCG]
Length = 227
Score = 123 bits (305), Expect = 2e-27
Identities = 77/218 (35%), Positives = 123/218 (56%), Gaps = 6/218 (2%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+L++ED +A L L + G DG L D ++LDL LPGM G +V
Sbjct: 4 VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 360
C++LR AR PV+M+TARDS +K+ G + GADDY+ KP++ +E+ R+ A+ RRG
Sbjct: 64 CKQLR--ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121
Query: 361 --KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+ VLE+G + +++ V G + L +L+ LM + V+TR L R
Sbjct: 122 DDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 181
Query: 535 VWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRI 660
VWG + + D+ +L VH+ LR+ ++ P + + T G+GY++
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225
>gi|548535|sp|P36556|BASR_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN
BASR/PMRA >gi|295211 (L13395) pmrA [Salmonella
typhimurium]
Length = 222
Score = 122 bits (304), Expect = 2e-27
Identities = 78/224 (34%), Positives = 119/224 (52%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED++ + L + G+A D + H + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++R + + PVL+LTA D+L++++TG D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLTRIRQK-KYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 537
L G+L N+ + R G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 538 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
W E P +++L VHIH LR V K I+T G GY + +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----SRIRTVRGFGYMLVATE 220
>gi|466194|sp|P35163|RESD_BACSU TRANSCRIPTIONAL REGULATORY PROTEIN
RESD >gi|629124|pir||S45559 hypothetical protein X17 -
Bacillus subtilis >gi|410141 (L09228) ORFX17 [Bacillus
subtilis] >gi|2634747|emb|CAB14244| (Z99116)
two-component response regulator [Bacillus subtilis]
Length = 240
Score = 122 bits (304), Expect = 2e-27
Identities = 79/218 (36%), Positives = 120/218 (54%), Gaps = 11/218 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D + I L YLE +A+D A +G + + +D I+LDL +PG DGIE
Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VCR++R +K TP++MLTA+ N++ GF++G DDY++KPF+ +EV +R+ AL RR
Sbjct: 68 VCRQIRE--KKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAS 125
Query: 364 GLQ--------TRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 519
VL L + D V G + L P ++L L + V R+
Sbjct: 126 QTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDRE 185
Query: 520 DLETRVWGEE-LPDSDSLRVHIHGLRAVVDK--PFDVPLIQTRHGIGYR 657
L VW E D ++ H+ LR ++K P I T G+GY+
Sbjct: 186 KLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYK 234
>gi|2440114|emb|CAB16701| (Z99494) two-component regulator
[Mycobacterium leprae]
Length = 233
Score = 122 bits (304), Expect = 2e-27
Identities = 80/217 (36%), Positives = 116/217 (52%), Gaps = 4/217 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
R+LV++D+SD+ A+L L G V A DG L A DAIVLD+N+P +DG+
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVS 68
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V LR PV +L+AR S+D+++ G ++GADDYL+KPF L E+ R+ AL RR
Sbjct: 69 VVTALR-AMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127
Query: 364 GLQTRVLET---GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
T ET G LE ++ R G + L +L L E V++R L
Sbjct: 128 ATATSSSETIAVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLEL 187
Query: 535 VWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
VWG + D++ + V I LR ++ L+ T G+G+
Sbjct: 188 VWGYDFAADTNVVDVFIGYLRRKLEANSGPRLLHTVRGVGF 228
>gi|1805445|dbj|BAA09007| (D50453) homologue of alkaline phosphatase
synthesis transcriptional regulatory protein PhoP of B.
subtilis [Bacillus subtilis] >gi|2632676|emb|CAB12183|
(Z99106) similar to two-component response regulator
[YclK] [Bacillus subtilis]
Length = 227
Score = 122 bits (303), Expect = 3e-27
Identities = 76/219 (34%), Positives = 121/219 (54%), Gaps = 10/219 (4%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL+IEDN + + + G +F DG+ G +D I+LD+ LP MDG+
Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+CRK+R + P++MLTA+D+ +++ GF+ GADDY+ KPF+ + R+ A+ RR
Sbjct: 61 TICRKIRETST--VPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRY 118
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLL------QLNPTGLKILQALMEATPAVVTRQD 522
K V++ +E T+ + R LL L P +L L++ V +R+
Sbjct: 119 KATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178
Query: 523 LETRVWGEEL-PDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYR 657
L +VWG + D ++ VHI LR A DKPF + T G+GY+
Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPF----LYTVWGVGYK 223
>gi|6460139|gb|AAF11874.1|AE002064_5 (AE002064) response regulator
[Deinococcus radiodurans]
Length = 220
Score = 122 bits (302), Expect = 4e-27
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 3/219 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L++ED+ IA L E G+AV +A G GL A++ EF +VLD+ LPG+DG
Sbjct: 1 MRLLLVEDDPRIAEPTAAALREAGYAVTWAQTGPEGLEAAMLGEFPLVVLDVMLPGLDGF 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
E+ +LR EA +P+L LTAR + +++ G D G D YL+KPFA+ E+ +L AL+RR
Sbjct: 61 EIAGQLR-EAEVDSPILFLTARGEVSDRVQGLDLGGDAYLVKPFAMPELLAQLRALTRRE 119
Query: 361 KGLQTRVLETGDLEYNLDTL--EVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+G + LDT+ V G+ + + ++L AL A +TR++L R
Sbjct: 120 RGQSAPRVSFAGGRGGLDTVARTVTWDGQEVAVTGREYELLSALALAPERWLTREELLDR 179
Query: 535 VWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 657
VWG E ++ + V++ LR + I + G GYR
Sbjct: 180 VWGPEFGGEARIVDVYVRYLR----RKLAPEAISSERGRGYR 217
>gi|2145537|pir||S70164 pcoR protein - Escherichia coli plasmid
pRJ1004
Length = 226
Score = 122 bits (302), Expect = 4e-27
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 1/217 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL++ED L L E G+ D +G GL A ++D I+LD+ LP +DG +
Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+ LR E+ + PVL LTA+D++ +K+ G + GA DYLIKPF E+ R+ L RR +
Sbjct: 63 IISALR-ESGHEEPVLFLTAKDNVRDKVKGLELGAADYLIKPFDFTELVARVRTLLRRAR 121
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
V D+ ++ V R GK + L +L+ L++ T V+ R + + VW
Sbjct: 122 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181
Query: 544 EEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
D++ + V + LR+ +D F+ LI T G GY
Sbjct: 182 MNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGY 219
>gi|6467529|gb|AAF13177.1|AF181078_1 (AF181078) response regulator
homolog [Rhodobacter capsulatus]
Length = 237
Score = 121 bits (301), Expect = 5e-27
Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL++ED+ + ++ L V G G+ LA ++++D I+LDLNLP M+G+
Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EV R+LR AR TP+L+LT D +NK+ GF GADDY+ KPF +E+ R++A+ RR
Sbjct: 61 EVLRQLRL-ARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRS 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
KG ++ TG + NLD V GK + L ++L+ L +T++ ++
Sbjct: 120 KGHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179
Query: 541 -GEELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
G + P+ + V I LR + + I+T G GY + PD
Sbjct: 180 GGMDEPELKIIDVFICKLRKKLAEVTGGENYIETVWGRGYVLRDPD 225
>gi|2960189|emb|CAA18087.1| (AL022121) hypothetical protein Rv3765c
[Mycobacterium tuberculosis]
Length = 234
Score = 121 bits (301), Expect = 5e-27
Identities = 77/218 (35%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
V +LV++D +A + L G + A DG + + A D +VLD+ LP M G+
Sbjct: 9 VTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGL 68
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+V KLR+E PVL+LTA+D++++++ G +G DDY+ KPF+++EV +RL AL RR
Sbjct: 69 DVLHKLRSE-NPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRR- 126
Query: 361 KGLQT----RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 528
G+ T L GDL + D+ EV R G+ + L T ++L+ +M + V+++ +
Sbjct: 127 TGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQIL 186
Query: 529 TRVWGEELPD-SDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
RVW + S+ + ++I LR +D + P+I T G GY
Sbjct: 187 DRVWSYDFGGRSNIVELYISYLRKKIDNGRE-PMIHTLRGAGY 228
>gi|400783|sp|P13792|PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS
TRANSCRIPTIONAL REGULATORY PROTEIN PHOP
>gi|40056|emb|CAA47908| (X67676) phoP [Bacillus
subtilis]
Length = 240
Score = 121 bits (300), Expect = 7e-27
Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 12/222 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I L LE G+ V A+DG L A + D IVLD+ LP +DGIE
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC++LR + + P+LMLTA+D +K+ G + GADDY+ KPF+ +EV R+ A+ RR +
Sbjct: 64 VCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122
Query: 364 ------GLQTRVLE----TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 513
++ +E GDL+ D E + L+L P ++L L V+T
Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182
Query: 514 RQDLETRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVPL-IQTRHGIGYRIATP 669
R L + VW + D+ + VHI LR ++ P+ I+T G+GY++ P
Sbjct: 183 RDLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEP 236
>gi|2293270 (AF008220) signal transduction regulator [Bacillus
subtilis] >gi|2635376|emb|CAB14871| (Z99118)
two-component response regulator [Bacillus subtilis]
Length = 240
Score = 121 bits (300), Expect = 7e-27
Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 12/222 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I L LE G+ V A+DG L A + D IVLD+ LP +DGIE
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC++LR + + P+LMLTA+D +K+ G + GADDY+ KPF+ +EV R+ A+ RR +
Sbjct: 64 VCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122
Query: 364 ------GLQTRVLE----TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 513
++ +E GDL+ D E + L+L P ++L L V+T
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182
Query: 514 RQDLETRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVPL-IQTRHGIGYRIATP 669
R L + VW + D+ + VHI LR ++ P+ I+T G+GY++ P
Sbjct: 183 RDLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEP 236
>gi|6460836|gb|AAF12540.1|AE001826_9 (AE001826) response regulator
[Deinococcus radiodurans]
Length = 219
Score = 120 bits (299), Expect = 9e-27
Identities = 79/220 (35%), Positives = 121/220 (54%), Gaps = 3/220 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L++ED+ IA LEE GH + DGV GL A FDA++LD+ LPG+ G
Sbjct: 1 MRLLLVEDDPRIALPTVRALEEAGHEAAWEPDGVRGLAAARAGAFDALLLDVMLPGLGGF 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
E+ R+LR + P++ LTAR L +++ G D G D YL+KPF L E+ L A+ RR
Sbjct: 61 ELARELR-AGGAEVPIVFLTARSDLADRVEGLDLGGDAYLVKPFELPELLAVLRAVVRRR 119
Query: 361 KGLQTRVLETGDLEYNLDT--LEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+ + +E + LDT +V +G+L L +L+AL + TR++L T+
Sbjct: 120 AAMCSARIEFAGGQGRLDTSGRQVWWQGELTGLTAREYALLEALTLSRERWFTREELLTK 179
Query: 535 VWGEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
VWG E D + V++ LR + +Q+ G+GYR+
Sbjct: 180 VWGPEFSGDMRVVDVYVSYLR----RKLAPEAVQSSRGLGYRV 218
>gi|4768853|gb|AAD29647.1|AF124757_7 (AF124757) phosphate regulatory
protein PhoB [Zymomonas mobilis]
Length = 231
Score = 119 bits (296), Expect = 2e-26
Identities = 78/224 (34%), Positives = 127/224 (55%), Gaps = 6/224 (2%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L++ED+ +A L + ++ V DG L LA + D ++LD + G GI
Sbjct: 4 LRLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGI 63
Query: 181 EVCRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 357
EVCR+LR P++MLTAR D+++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123
Query: 358 GK-GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+ L L D+E +L + V+R G + + PT ++L+ LME V +R+ L
Sbjct: 124 IRPALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183
Query: 535 VWGEELPDSD----SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
+WG+ DSD ++ VHI LR +++ LI+T GY + T +
Sbjct: 184 IWGQ---DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALDTDE 230
>gi|4104599 (AF036965) putative response regulator [Lactobacillus
sakei]
Length = 237
Score = 119 bits (295), Expect = 3e-26
Identities = 75/221 (33%), Positives = 122/221 (54%), Gaps = 9/221 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
ILV++D I L LE+ V A DG L +A+ +FD I+LDL LP +DGI V
Sbjct: 4 ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGIAV 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK- 363
+K+R EA+ +TP+++LTA+D+ +K+ G + GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 TKKIR-EAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTTQ 122
Query: 364 ------GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 525
+ + GDL + + ++ L L P ++L M V +R+ L
Sbjct: 123 PIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREKL 182
Query: 526 ETRVWGEELP-DSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATP 669
VWG + P ++ + + + LR + D P ++T G GY++ P
Sbjct: 183 LNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDP 232
>gi|3401948|dbj|BAA32131| (AB011413) Orf3 [Streptomyces griseus]
Length = 224
Score = 119 bits (295), Expect = 3e-26
Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 1/221 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L++ED+ D+ +G L + G A D A+D L + +D +VLD +P D +
Sbjct: 1 MRVLLVEDDDDLRDVIGAGLRDGGFAWDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
R A PVL LTA DSLD +L G +SGADDYL KPF+++E+ +R+ LSRR
Sbjct: 61 APLEG-RRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRA 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
L D+ ++ EVRR G LL L+P +LQ L+ VVTR L W
Sbjct: 120 SARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCW 179
Query: 541 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 663
E P S+ + + GLR + P L+ T G G+ ++
Sbjct: 180 DEMADPVSNVVDAVVAGLRRKLGSP---GLVHTVRGQGFLLS 218
>gi|584828|sp|P30843|BASR_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
BASR/PMRA >gi|478428|pir||JX0284 response-regulator BasR
protein - Escherichia coli >gi|216538|dbj|BAA03143|
(D14055) BasR [Escherichia coli]
Length = 222
Score = 118 bits (294), Expect = 3e-26
Identities = 78/220 (35%), Positives = 115/220 (51%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED++ + L + G+A D + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDTVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++R + + PVL+LTARD+L +K+ G D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLARIRQK-KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 537
L G+L N+ +V G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 538 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
W E P +++L VHIH LR V K I+T G GY +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216
>gi|1360982|pir||S56341 basR protein - Escherichia coli >gi|536957
(U14003) basR gene product [Escherichia coli]
>gi|1790552 (AE000483) transcriptional regulatory
protein, member of 2-component regulatory system,
[Escherichia coli]
Length = 222
Score = 118 bits (294), Expect = 3e-26
Identities = 78/220 (35%), Positives = 115/220 (51%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED++ + L + G+A D + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
++R + + PVL+LTARD+L +K+ G D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLARIRQK-KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 537
L G+L N+ +V G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 538 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
W E P +++L VHIH LR V K I+T G GY +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216
>gi|5830529|emb|CAB54572.1| (AJ006394) response regulator
[Streptococcus pneumoniae]
Length = 235
Score = 118 bits (294), Expect = 3e-26
Identities = 78/218 (35%), Positives = 122/218 (55%), Gaps = 11/218 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
++L+++D I L +L + G + +G L LA FD I+LD+ LP +DG+E
Sbjct: 4 QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC++LR + K TP++M++A+ +K+ + GADDYL KPF+ +E+ R+ A+ RR K
Sbjct: 64 VCKRLRAKGVK-TPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTK 122
Query: 364 GLQ-----TRVLET----GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 516
G Q + + G L+ + EV + KLL L P ++L LM+ +TR
Sbjct: 123 GEQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTR 182
Query: 517 QDLETRVWGEELPDSDSL-RVHIHGLR-AVVDKPFDVPLIQTRHGIGYR 657
+ L R+WG + L VHI LR + D P I+T G GY+
Sbjct: 183 ERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYK 231
>gi|730805|sp|P39663|SPHR_SYNP7 ALKALINE PHOSPHATASE SYNTHESIS
TRANSCRIPTIONAL REGULATORY PROTEIN SPHR
>gi|421362|pir||S32931 sensor protein sphS -
Synechococcus sp. (PCC 7942) >gi|391921|dbj|BAA02453|
(D13172) SphR [Synechococcus sp.]
Length = 257
Score = 118 bits (294), Expect = 3e-26
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 14/219 (6%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHL---------AVVHEFDAIVLDL 156
RILV+ED + I + L++ G VD AADG T L+ +V D +VLDL
Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84
Query: 157 NLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVR 336
LP ++G++ CR LR + P+LML+A+D+ +++ G + GADDYL KPF +E+ R
Sbjct: 85 MLPAVNGLDFCRLLRRQG-VTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143
Query: 337 LNALSRRGKGLQTR---VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAV 507
AL RR + VL L+ + V + L L+P ++L+ M V
Sbjct: 144 CRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRV 203
Query: 508 VTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRI 660
+R L ++WG + + DS ++ VHI LR ++ P + + T G GYR+
Sbjct: 204 WSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256
>gi|2961074 (AF029846) TctD [Salmonella typhi]
Length = 223
Score = 118 bits (293), Expect = 4e-26
Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+ EDN ++A L L + G AVD + + HL + +VLD+N+PGMDG+
Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFERLAADHLLHSEMYALMVLDINMPGMDGL 60
Query: 181 EVCRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 357
EV ++LR R QT PVL+LTAR L +++ G + GADDYL KPF L+E++ RL AL RR
Sbjct: 61 EVVQRLRK--RGQTLPVLLLTAR-RLADRVKGLNVGADDYLPKPFELEELDARLRALLRR 117
Query: 358 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
GL V + G+L ++ D +G+ L L P +L LM V+RQ L +V
Sbjct: 118 SAGLVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQV 176
Query: 538 WG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
+ + +S+ ++IH LR + + DV + R G+GY + D
Sbjct: 177 FSLNDEVSPESIELYIHRLRKKL-QGSDVRITVLR-GLGYVLERGD 220
>gi|2952543 (AF051939) response regulator CtrA [Brucella abortus]
Length = 232
Score = 118 bits (293), Expect = 4e-26
Identities = 78/225 (34%), Positives = 124/225 (54%), Gaps = 2/225 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+IED+S IA ++ L+ V G G+ L ++++D I+LDLNLP M G
Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EV R LR ++ +TP+L+L+ +++K+ G GADDY+ KPF E+ R++A+ RR
Sbjct: 61 EVLRTLRL-SKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRS 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
KG V+ TGDL NLD V G+ + L ++L+ L +T++ ++
Sbjct: 120 KGHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179
Query: 541 -GEELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPDA 675
G + P+ + V I LR +D + I+T G GY + PDA
Sbjct: 180 GGMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLREPDA 226
>gi|1617255|emb|CAA47148| (X66587) phoP [Yersinia
pseudotuberculosis]
Length = 223
Score = 118 bits (292), Expect = 6e-26
Identities = 72/219 (32%), Positives = 123/219 (55%), Gaps = 1/219 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV+EDN+ + +L + E GH VD A D + H D ++DL LPG DG+
Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ R+ R+ ++ P+L+LTAR+S +K+ ++GADDY+ KPF L+EV R+ AL RR
Sbjct: 61 SLIRRWRSH-QENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRN 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
GL ++++E + +L E+ + ++L I++ L+ VV++ L +++
Sbjct: 120 IGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQLY 179
Query: 541 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 657
+ EL +S ++ V + LR + +I T G GYR
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYR 219
>gi|3860641|emb|CAA14542| (AJ235270) TRANSCRIPTIONAL ACTIVATOR
PROTEIN CZCR (czcR) [Rickettsia prowazekii]
Length = 237
Score = 118 bits (292), Expect = 6e-26
Identities = 78/224 (34%), Positives = 118/224 (51%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+IED S++A + L G D A+ GV GL L V +D ++LDL LP ++G
Sbjct: 1 MRVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKVGIYDLVILDLMLPDINGF 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
E+ +LR A+ +TP+L+L++ D K+T F SGADDYL KPF +E+ R+ A+ RR
Sbjct: 61 EILLRLR-AAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRS 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
KG + + NLDT V GK L L IL+ L+ ++T++ ++
Sbjct: 120 KGHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLY 179
Query: 541 GE-ELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
+ P+ + V I LR + D I T G GY + D
Sbjct: 180 STVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKEYD 225
>gi|73046|pir||RGBSAP alkaline phosphatase regulatory protein -
Bacillus subtilis >gi|143328 (M16775) phoP protein
(put.); putative [Bacillus subtilis]
Length = 241
Score = 117 bits (290), Expect = 1e-25
Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 13/222 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I L LE G+ V A+DG L A + D IVLD+ LP +DGIE
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC++LR + + P+LMLTA+D +K+ G + GADDY+ KPF+ +EV R+ A+ RR +
Sbjct: 64 VCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122
Query: 364 ------GLQTRVLE----TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 513
++ +E GDL+ D E + L+L P ++L L V+T
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLT 182
Query: 514 RQDLETRVWGEELP-DSDSLRVHIHGLRAV-VDKPFDVPL-IQTRHGIGYRIATP 669
R L + VW + D+ + VHI LR ++ P+ I+T G+GY++ P
Sbjct: 183 RDLLLSAVWNYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEEP 237
>gi|3980223|emb|CAA10325.1| (AJ131213) response regulator
[Streptomyces coelicolor A3(2)]
>gi|4585590|emb|CAB40858.1| (AL049628) response
regulator [Streptomyces coelicolor]
Length = 234
Score = 117 bits (290), Expect = 1e-25
Identities = 84/218 (38%), Positives = 125/218 (56%), Gaps = 15/218 (6%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+L +ED+ I LE G AV DG++GL D +LD+ LPG+DG+ +
Sbjct: 7 VLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRADRPDIALLDVMLPGLDGVSL 66
Query: 187 CRKLRNEARKQTPVLMLTAR-DSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
CR++R+E+ PV+ML+AR DS+D L G ++GADDY+ KPF + R+ A+ RR
Sbjct: 67 CRRIRDES--TVPVIMLSARADSIDVVL-GLEAGADDYVTKPFDGAVLVARIRAVLRRFG 123
Query: 358 --GKGLQTR---------VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPA 504
G G +T VL GDLE + D +EVRR G+ + L PT +++L A
Sbjct: 124 HAGGGDRTEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGT 183
Query: 505 VVTRQDLETRVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
V++R L RVW D+ + VH+ LR + + I+T G GY++
Sbjct: 184 VLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQ----DRIETVRGFGYKL 232
>gi|6689205|emb|CAB65399.1| (AJ012052) VicR protein [Staphylococcus
aureus]
Length = 239
Score = 117 bits (290), Expect = 1e-25
Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 9/217 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+++V++D IA L L++ G+ V A DG + L E D ++LD+ LPG DG+E
Sbjct: 10 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 69
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
VCR++R + + P++MLTA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 70 VCREVRK--KYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHY 127
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
G T + D+ D +++RG+ ++L ++ L + V+TR+
Sbjct: 128 SQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREH 187
Query: 523 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGY 654
L VWG + D ++ V I LR + D P I TR G+GY
Sbjct: 188 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 233
>gi|6448492|emb|CAB61229.1| (Y15706) vanr protein [Bacillus
circulans]
Length = 231
Score = 117 bits (290), Expect = 1e-25
Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 9/219 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D DIA + YL+ + V L E D +LD+ LPG G+
Sbjct: 4 KILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGASGLS 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+C+K+R+ + P++MLTA+DS +K+TG GADDY+ KPF E+ R+ A RR K
Sbjct: 64 ICQKIRD--KYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121
Query: 364 GL------QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 525
++ L N++T E K L L PT IL+ L E VV+ + +
Sbjct: 122 KYSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQI 181
Query: 526 ETRVWGEEL--PDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 660
+WGEE ++++ VHI LR ++ D P I+T G+GY+I
Sbjct: 182 FHEIWGEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGYKI 229
>gi|5114230|gb|AAD40237.1|AF136709_1 (AF136709) response regulator
YycF [Staphylococcus aureus]
Length = 233
Score = 117 bits (290), Expect = 1e-25
Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 9/217 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+++V++D IA L L++ G+ V A DG + L E D ++LD+ LPG DG+E
Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
VCR++R + + P++MLTA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 64 VCREVRK--KYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHY 121
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
G T + D+ D +++RG+ ++L ++ L + V+TR+
Sbjct: 122 SQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREH 181
Query: 523 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGY 654
L VWG + D ++ V I LR + D P I TR G+GY
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227
>gi|6687469|emb|CAB64972.1| (AJ012050) VicR protein [Enterococcus
faecalis]
Length = 283
Score = 117 bits (290), Expect = 1e-25
Identities = 80/223 (35%), Positives = 123/223 (54%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I+ + L + G+ V A DG L E D I+LDL LP MDG+E
Sbjct: 52 KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 111
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG- 360
V R++R P++M+TA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RRG
Sbjct: 112 VAREVRKT--HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGA 169
Query: 361 -KGLQTRV-----LETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ V L GDL + D V +RG+ ++L ++L L + V+TR+
Sbjct: 170 TNAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREH 229
Query: 523 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
L VWG + D ++ V + LR + D P + TR G+GY + P+
Sbjct: 230 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPE 281
>gi|1550635|emb|CAB02400| (Z80226) phoP [Mycobacterium tuberculosis]
Length = 247
Score = 116 bits (289), Expect = 1e-25
Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 5/222 (2%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
R+LV++D ++I L L+ +G V A +G L A DA++LD+ +PGMDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-G 360
V R+LR + P L LTARDSL +K+ G G DDY+ KPF+L+EV RL + RR G
Sbjct: 82 VLRRLRADGI-DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 140
Query: 361 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
KG + L D+E + +T EV + G+ + L+PT +L+ + V+++ +
Sbjct: 141 KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 200
Query: 532 RVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 669
VW + D + + ++ LR +D + L+ T G+GY + P
Sbjct: 201 HVWRYDFGGDVNVVESYVSYLRRKIDTG-EKRLLHTLRGVGYVLREP 246
>gi|5830538|emb|CAB54578.1| (AJ006397) response regulator
[Streptococcus pneumoniae]
Length = 232
Score = 116 bits (288), Expect = 2e-25
Identities = 73/221 (33%), Positives = 126/221 (56%), Gaps = 4/221 (1%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
IL+++D +I YL + G+ V A DG+ L L D I+ D+ +P MDG ++
Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRL-NALSRRGK 363
+++ + +Q P L +TA+ S +K+ G GADD++ KPF+ +E+ +R+ N L R +
Sbjct: 65 ISEVQYLSPEQ-PFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHR 123
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
G +T ++ G+L+ N + EV+ ++L L ++L L V ++ DL ++W
Sbjct: 124 GGETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIWK 183
Query: 544 EE-LPDSDSLRVHIHGLRAVVDK--PFDVPLIQTRHGIGYRIATP 669
E+ + D+++L VHIH LR + K P I+T G+GY+I P
Sbjct: 184 EDYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228
>gi|1621018|emb|CAA70004| (Y08758) PhoP protein [Yersinia pestis]
Length = 223
Score = 116 bits (287), Expect = 2e-25
Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 1/219 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV+EDN+ + +L + E GH VD A D + H D ++DL LPG DG+
Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ R+ R+ ++ P+L+LTAR+S +K+ ++GADDY+ KPF L+EV R+ AL RR
Sbjct: 61 SLIRRWRSH-QENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRN 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
GL ++++E + +L E+ + ++L I++ L+ VV++ L +++
Sbjct: 120 IGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY 179
Query: 541 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 657
+ EL +S ++ V + LR + +I T GYR
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRSQGYR 219
>gi|4530445|gb|AAD22036.1| (AF118229) response regulator PnpR
[Streptococcus pneumoniae]
Length = 250
Score = 115 bits (285), Expect = 4e-25
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 12/211 (5%)
Frame = +1
Query: 25 NSDIAANLGDY-LEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLR 201
NS NL DY L + G + +G L LA FD I+LD+ LP +DG+EVC++LR
Sbjct: 25 NSCXILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCKRLR 84
Query: 202 NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKGLQ--- 372
+ K TP++M++A+ +K+ + GADDYL KPF+ +E+ R+ A+ RR KG Q
Sbjct: 85 AKGVK-TPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGD 143
Query: 373 --TRVLET----GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+ + G L+ + EV + KLL L P ++L LM+ +TR+ L R
Sbjct: 144 DSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLLER 203
Query: 535 VWGEELPDSDSL-RVHIHGLR-AVVDKPFDVPLIQTRHGIGYR 657
+WG + L VHI LR + D P I+T G GY+
Sbjct: 204 IWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYK 246
>gi|4104695 (AF039082) putative response regulator; RrF [Lactococcus
lactis]
Length = 222
Score = 115 bits (284), Expect = 5e-25
Identities = 75/218 (34%), Positives = 125/218 (56%), Gaps = 5/218 (2%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED+ ++ ++ D+L+ V DGV GL+ A + +D I+LDL LP +G
Sbjct: 2 IKILLVEDDLSLSKSVYDFLKSFAQ-VKQVYDGVEGLYEAELGIYDLILLDLMLPEKNGF 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 357
EV ++LR E TPVL++TA++SLD+K+ GFD GADDYL KPF L E++ R+ AL +R
Sbjct: 61 EVLKELR-EQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRT 119
Query: 358 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
GK + L G++ NL + + L ++ LM+ ++ ++ + R+
Sbjct: 120 GKLEDSNGLSYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRI 179
Query: 538 WGEELPDSDS----LRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
WG DSD+ + V++ +R + V + T +GY
Sbjct: 180 WGY---DSDTTVTVVEVYMSKIRKKLKDTEFVNNLSTLRNVGY 219
>gi|987095|emb|CAA60455| (X86780) response regulator [Streptomyces
hygroscopicus]
Length = 220
Score = 115 bits (284), Expect = 5e-25
Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV ED+ +A + L + AVD AA + ++ +D ++LD +LP + G
Sbjct: 1 MRVLVAEDHRVLARTIATGLRRQAMAVDVAAAADEAERMCLLTAYDVLILDRDLPVLSGD 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDS-GADDYLIKPFALQEVEVRLNALSRR 357
EVCR+LR E + +LMLTA L +K+ G + GADDYL KPF E+ R+ LSRR
Sbjct: 61 EVCRRLR-ELQDPPRILMLTAAGELTDKIYGLTTLGADDYLAKPFDFSELVARVRTLSRR 119
Query: 358 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
VL + + EV G+ L+L P L +L L+ A A V+ +L V
Sbjct: 120 APKQPPTVLRFASITLDETRREVSVDGRPLELTPKELAVLHLLLVAGGAPVSHDELVRTV 179
Query: 538 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
W E L P + ++R + LR + P LI G GYR+
Sbjct: 180 WDEHLDPRTSAVRATVSRLRGKLGDP---GLILADKGEGYRL 218
>gi|4433393|gb|AAD20723| (AF051157) response regulator homolog OmpR
[Vibrio cholerae]
Length = 240
Score = 114 bits (283), Expect = 7e-25
Identities = 78/223 (34%), Positives = 121/223 (53%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
++LV++D++ + A L YL E+G V A+G L F +VLDL LPG DG+
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
+CR+LRN + P+LMLTA+ +++ G + GADDYL KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRN-SNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ ++E G+ NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 VEAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184
Query: 523 LETRVWGEELPDSD-SLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 672
L G E + S+ V I LR +++ P IQT G+GY + PD
Sbjct: 185 LMNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGY-VFVPD 235
>gi|1151107 (U39559) cell cycle transcriptional regulator
[Caulobacter crescentus]
Length = 231
Score = 114 bits (282), Expect = 9e-25
Identities = 75/224 (33%), Positives = 119/224 (52%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+IED+S A + L+ G V G G+ L ++++D I+LDLNLP M GI
Sbjct: 1 MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGI 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+V R LR A+ TP+++L+ +D K+ F GADDY+ KPF E+ R++A+ RR
Sbjct: 61 DVLRTLR-VAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRS 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
KG V++TGD+ NLD V G + L ++L+ L +T++ ++
Sbjct: 120 KGHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179
Query: 541 -GEELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
G + P+ + V I LR + I+T G GY + P+
Sbjct: 180 GGMDEPELKIIDVFICKLRKKLAASAHGKHHIETVWGRGYVLRDPN 225
>gi|1652041|dbj|BAA16966| (D90902) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 245
Score = 114 bits (282), Expect = 9e-25
Identities = 77/222 (34%), Positives = 121/222 (53%), Gaps = 11/222 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
IL++ED+ +IA + + LE DG TGL + D IVLDL LP +DG+EV
Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
Query: 187 CRKLRNEARKQTP-VLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
C ++R + + P +LMLTA+ +++ G +GADDYL+KPF+ +E+ R+ AL RR
Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133
Query: 358 --GKGLQTRVLETGDLEYNLDTLEVRR----RGKLLQLNPTGLKILQALMEATPAVVTRQ 519
G+ + ++ T + +LD + R R + L+L +L M V R
Sbjct: 134 RQGQPV-GQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRT 192
Query: 520 DLETRVWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 672
L ++WG + D + HI LR ++ P + I+T G+GY+ PD
Sbjct: 193 QLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245
>gi|3849845|emb|CAA11808| (AJ224003) response regulator
[Carnobacterium divergens]
Length = 219
Score = 114 bits (282), Expect = 9e-25
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 1/216 (0%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
ILVI+D DI + + LE+ GH+V + T + ++ +D I+LD+ +P ++G E
Sbjct: 4 ILVIDDGEDILSIIKIGLEKDGHSVTILTNP-THITTQKINFYDVILLDIMMPKVNGYEA 62
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
++ RN +P++ LTA+ + ++ L G GADDYL KPF + E+ R+NA RR
Sbjct: 63 LKEFRNMT--DSPIIFLTAKTAEEDILYGLSLGADDYLTKPFRISELRARVNAHIRRESR 120
Query: 367 LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGE 546
L GD +NL ++ + K++ L +I + L + R + V+G
Sbjct: 121 EHLVTLNLGDFRFNLSQKKLYFKEKVVNLTKGEYEICEFLARNRGRIYARDQIYESVFGY 180
Query: 547 ELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
E DS S+ HI +R+ D P D P I TR G+GY
Sbjct: 181 EAEGDSQSISTHIKNIRSKFDNPEDSP-IYTRWGVGY 216
>gi|5830523|emb|CAB54568.1| (AJ006392) response regulator
[Streptococcus pneumoniae]
Length = 234
Score = 113 bits (281), Expect = 1e-24
Identities = 74/217 (34%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+IL+++D I+ + + + G+ V A +G L + D I+LDL LP +DG+E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V + +R + P+LML+A+DS +K+ G + GADDY+ KPF+ +E++ R+ AL RR +
Sbjct: 63 VAKTIRKTS--SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
Query: 364 GL---------QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 516
+ + + ++ GDLE D ++ G+ L L ++L L T V+TR
Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180
Query: 517 QDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGY 654
+ L VWG + D ++ V + LR + D P I TR G+GY
Sbjct: 181 EHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGY 228
>gi|586808|sp|P37478|YYCF_BACSU HYPOTHETICAL 27.2 KD SENSORY
TRANSDUCTION PROTEIN IN ROCR-PURA INTERGENIC REGION
>gi|2126981|pir||S65967 hypothetical protein - Bacillus
subtilis >gi|467327|dbj|BAA05173| (D26185) unknown
[Bacillus subtilis] >gi|1064814|dbj|BAA11300| (D78193)
homologous to sp:PHOP_BACSUB [Bacillus subtilis]
>gi|2636588|emb|CAB16078| (Z99124) similar to
two-component response regulator [YycG] [Bacillus
subtilis]
Length = 235
Score = 113 bits (281), Expect = 1e-24
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D IA L L + G+ V A DG + + + D I+LD+ LP DG+E
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
VCR++R + P++MLTA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 64 VCREVRK--KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQL 121
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ + + G L D V +R + ++L ++L L + V+TR+
Sbjct: 122 TTAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREH 181
Query: 523 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
L VWG + D ++ V + LR + D P I TR G+GY + P+
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPE 233
>gi|130127|sp|P14146|PHOP_SALTY VIRULENCE TRANSCRIPTIONAL REGULATORY
PROTEIN PHOP >gi|73045|pir||RGEBFT regulatory protein
phoP - Salmonella typhimurium >gi|154264 (M25241) PhoP
protein [Salmonella typhimurium] >gi|154266 (M24424)
phoP protein [Salmonella typhimurium]
Length = 224
Score = 113 bits (281), Expect = 1e-24
Identities = 70/218 (32%), Positives = 120/218 (54%), Gaps = 1/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV+EDN+ + +L L++ GH VD A D + H D ++DL LP DG+
Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGL 61
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ R+ R+ + PVL+LTAR+ +K+ SGADDY+ KPF ++EV R+ AL RR
Sbjct: 62 SLIRRWRS-SDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRN 120
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
GL ++V+ + +L E+ ++++L I++ L+ VV++ L +++
Sbjct: 121 SGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 180
Query: 541 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
+ EL +S ++ V + LR + + +I T G GY
Sbjct: 181 PDAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219
>gi|130126|sp|P23836|PHOP_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
PHOP >gi|281913|pir||A41965 alkaline phosphatase
regulatory protein phoP - Escherichia coli >gi|147254
(M81433) phoP [Escherichia coli]
>gi|216608|dbj|BAA14390| (D90393) PhoP protein
[Escherichia coli] >gi|1651558|dbj|BAA35952| (D90748)
Transcriptional regulatory protein PhoP. [Escherichia
coli] >gi|1651564|dbj|BAA35961| (D90749) Transcriptional
regulatory protein PhoP. [Escherichia coli] >gi|1787375
(AE000213) transcriptional regulatory protein
[Escherichia coli]
Length = 223
Score = 113 bits (280), Expect = 1e-24
Identities = 68/218 (31%), Positives = 120/218 (54%), Gaps = 1/218 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV+EDN+ + +L +++ GH VD A D + H D ++DL LP DG+
Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ R+ R+ P+L+LTAR+S +K+ +GADDY+ KPF ++EV R+ AL RR
Sbjct: 61 SLIRRWRSND-VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
GL ++V+ + +L E+ ++++L I++ L+ VV++ L +++
Sbjct: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179
Query: 541 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
+ EL +S ++ V + LR + + +I T G GY
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218
>gi|4104608 (AF036968) putative response regulator [Lactobacillus
sakei]
Length = 246
Score = 113 bits (280), Expect = 1e-24
Identities = 75/219 (34%), Positives = 125/219 (56%), Gaps = 20/219 (9%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH--EFDAIVLDLNLPGMD 174
++IL++EDN ++ +G + ++ FA DG + V +D I LDLNLPGMD
Sbjct: 1 MKILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMD 60
Query: 175 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 354
G++V +K+R ++ K P++MLTARDS +++ G + GADDY+ KPF+ + R+ AL R
Sbjct: 61 GMQVAQKIREQS-KVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHR 119
Query: 355 RGK-------GLQTRVLETGDLEYNLDTLEVRRRGK----------LLQLNPTGLKILQA 483
R + +V E + +Y++ T + K +L L P +L+
Sbjct: 120 RAELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKT 179
Query: 484 LMEATPAVVTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 657
L + V +R+ L VW + D ++ HI LR +++ +IQT G+GY+
Sbjct: 180 LAKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEE-VGPQVIQTVWGVGYK 237
>gi|6460240|gb|AAF11967.1|AE002072_9 (AE002072) DNA-binding response
regulator [Deinococcus radiodurans]
Length = 373
Score = 113 bits (280), Expect = 1e-24
Identities = 82/224 (36%), Positives = 120/224 (52%), Gaps = 1/224 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILVIED+ DIA L L + G+ VD A + GL A D I+LDL LP DG +
Sbjct: 5 RILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGD 64
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V ++LR + P+++LTARD+++ K+ GADDYLIKPF E+ R+ R+
Sbjct: 65 VVQRLRKNS--ALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ-- 120
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
+ L GDL + V +G+ L+L+P IL L+ V +RQ++ +W
Sbjct: 121 -RTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQ 179
Query: 544 EELPD-SDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 675
LP+ S+ + VH+ LRA + L++T G +ATP A
Sbjct: 180 GRLPEGSNVVDVHMANLRAKLRDLDGYGLLRTVRG----VATPCA 220
>gi|1001828|dbj|BAA10709| (D64005) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 232
Score = 113 bits (279), Expect = 2e-24
Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 9/219 (4%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH------EFDAIVLDLNL 162
+R+L++ED D+ L L + VD+ DG +LA + + + D +
Sbjct: 1 MRLLLVEDEPDLGMALEKALRRENYVVDWVQDG----NLAWSYLDQGWVNYTLAIFDWMV 56
Query: 163 PGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLN 342
PG+ G+E+C+KLR + R P+LMLTA+D + +++ G D+GADDYLIKPF + E+ RL
Sbjct: 57 PGLSGLELCQKLRGQ-RSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLR 115
Query: 343 ALSRRGKGLQTRVLETGD--LEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 516
+L RR LQ + L+ G L+Y + + + + L ++L+ M+ +++
Sbjct: 116 SLQRRSPELQPQQLQVGQWWLDYGTFAVVTPEQAR-ITLTAKEFQLLEYFMKHPQQILSS 174
Query: 517 QDLETRVWGEELPD-SDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 657
+ ++ ++W S+ + + LR +++ LI+T +G+GYR
Sbjct: 175 EQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYR 222
>gi|586203|sp|Q06239|VANR_ENTFC REGULATORY PROTEIN VANR
>gi|282285|pir||A41838 transcriptional activator VanR -
Enterococcus faecium >gi|148327 (M68910) vancomycin
response regulator [Enterococcus faecium] >gi|148332
(M84146) vanR [Enterococcus faecium] >gi|155039 (M97297)
vanR [Transposon Tn1546] >gi|383762|prf||1904198A vanR
gene [Enterococcus faecalis]
Length = 231
Score = 112 bits (278), Expect = 3e-24
Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 9/219 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+IL+++D +IA + YL+ + V L E D +LD+ LPG G+
Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+C+K+R+ + P++MLT +D+ +K+TG GADDY+ KPF E+ R+ A RR K
Sbjct: 64 ICQKIRD--KHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121
Query: 364 GL------QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 525
V+ L N++T E K L L PT IL+ L E VV+ + L
Sbjct: 122 KFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181
Query: 526 ETRVWGEEL--PDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 660
+WG+E ++++ VHI LR ++ D P I+T G+GY+I
Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKI 229
>gi|1731135|sp|P54443|YRKP_BACSU HYPOTHETICAL 26.8 KD SENSORY
TRANSDUCTION PROTEIN IN BLTR-SPOIIIC INTERGENIC REGION
>gi|1303715|dbj|BAA12371| (D84432) YrkP [Bacillus
subtilis] >gi|2635088|emb|CAB14584| (Z99117) similar to
two-component response regulator [YrkQ] [Bacillus
subtilis]
Length = 231
Score = 112 bits (278), Expect = 3e-24
Identities = 78/218 (35%), Positives = 119/218 (53%), Gaps = 9/218 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV+ED+ DI L + L G+ V A DG L L V D ++LD+ +PG+ GIE
Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQL-VNDSLDLVILDIMMPGISGIE 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
C+ +R + P+L LTAR S +K G +G DDY+ KPF+ +E+ R+ A RR
Sbjct: 63 TCQHIRKSSN--VPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYT 120
Query: 358 ----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 525
K + L G L + + EV + K ++L+ +IL+ LM + + Q++
Sbjct: 121 IYQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNI 180
Query: 526 ETRVWGEE--LPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYR 657
VWG+ ++++ VHI LR+ + D P I+T G GYR
Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYR 227
>gi|1351749|sp|P48259|YC27_CYAPA PROBABLE TRANSCRIPTIONAL REGULATOR
YCF27 (OMPR-LIKE PROTEIN) >gi|1016232 (U30821) ycf27
gene product [Cyanophora paradoxa]
Length = 239
Score = 112 bits (278), Expect = 3e-24
Identities = 75/217 (34%), Positives = 126/217 (57%), Gaps = 11/217 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I L L G+ V AADG L + + + +VLD+ +P +DG
Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC++LR E+ P++MLTA + +++TG + GADDY++KPF+ +E+E R+ +L RR +
Sbjct: 67 VCQELRKES--DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTE 124
Query: 364 G--LQT-----RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
L T L+ G L+ +++ +V + G+ ++L +L+ L+ +R
Sbjct: 125 NPTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQ 184
Query: 523 LETRVWG---EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGY 654
+ VWG E D+ + VHI LR+ +++ P + LI T GIGY
Sbjct: 185 ILQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGY 232
>gi|6136611|sp|O78428|YC27_GUITH PROBABLE TRANSCRIPTIONAL REGULATOR
YCF27 (OMPR-LIKE PROTEIN) >gi|3602952|gb|AAC35613|
(AF041468) ompR homolog [Guillardia theta]
Length = 254
Score = 112 bits (278), Expect = 3e-24
Identities = 69/217 (31%), Positives = 125/217 (56%), Gaps = 11/217 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
++L+++D + I L L G+ V A+DG L+L D ++LD+ +P +DG
Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC+++R ++ P++MLTA + +++TG + GADDY++KPF+ +E+E R+ A+ RR
Sbjct: 76 VCQEIRKDS--DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTN 133
Query: 364 --GLQTRVLETGDLEYNLDTLEVRRR-----GKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ + +G + +N T+++ +R + ++L +L+ L+ + +R D
Sbjct: 134 KAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRAD 193
Query: 523 LETRVWG---EELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGY 654
+ VWG E D+ + VHI LRA ++ P + LI T G GY
Sbjct: 194 ILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGY 241
>gi|1175624|sp|P42244|YCBL_BACSU HYPOTHETICAL 25.8 KD SENSORY
TRANSDUCTION PROTEIN (ORF11) >gi|710006|dbj|BAA06476|
(D30808) homologue of vancomycin resistance gene product
(VanR) of Enterococcus faecium [Bacillus subtilis]
>gi|2632541|emb|CAB12049| (Z99105) similar to
two-component response regulator [YcbM] [Bacillus
subtilis]
Length = 226
Score = 111 bits (276), Expect = 4e-24
Identities = 68/217 (31%), Positives = 117/217 (53%), Gaps = 8/217 (3%)
Frame = +1
Query: 10 LVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVC 189
+++ED+ I+ + YL + G + A DG G+ L +D ++LD+ LP ++G++
Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60
Query: 190 RKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG--- 360
+ +R ++ PVLM++A+D +K G GADDY+ KPF++ E+ R+ A RR
Sbjct: 61 KIIREKSN--IPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQY 118
Query: 361 ---KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ +V+ L ++D + V + G+ LQL T ++L V T+ +
Sbjct: 119 SAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYR 178
Query: 532 RVWGEE-LPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRI 660
VW EE D + + VH+ LR + D P I+T GIGY++
Sbjct: 179 SVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223
>gi|3724162|emb|CAA09795| (AJ011832) PhoP protein [Yersinia
enterocolitica]
Length = 200
Score = 111 bits (276), Expect = 4e-24
Identities = 66/198 (33%), Positives = 114/198 (57%), Gaps = 1/198 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+LV+EDN+ + +L + E GH VD A D + H D ++DL LPG DG+
Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ R+ R+ + P+L+LTAR+S +K+ ++GADDY+ KPF L+EV R+ AL RR
Sbjct: 61 SLIRRWRSH-QTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRN 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
GL ++++E + +L E+ + ++L I++ L+ VV++ L +++
Sbjct: 120 IGLASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY 179
Query: 541 GE-ELPDSDSLRVHIHGLR 594
+ EL +S ++ V + LR
Sbjct: 180 PDAELRESHTIDVLMGRLR 198
>gi|129159|sp|P28835|YC27_PORAE PROBABLE TRANSCRIPTIONAL REGULATOR
YCF27 (OMPR-LIKE PROTEIN) >gi|81162|pir||S20860
regulatory protein ompR - red alga (Porphyridium
aerugineum) chloroplast >gi|14153|emb|CAA44464| (X62579)
regulatory protein [Porphyridium aerugineum]
Length = 240
Score = 111 bits (275), Expect = 6e-24
Identities = 73/217 (33%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILVI+D + I L L G+ V AADG L + + +VLDL +P +DG
Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC++LR E+ P++MLTA + +++TG + GADDY++KPF+ +E+E R+ ++ RR
Sbjct: 65 VCQELRKES--DVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVD 122
Query: 364 GLQTR-------VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ ++ G L+ +++ +V + + ++L +L+ L+ +R
Sbjct: 123 KASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRAT 182
Query: 523 LETRVWG---EELPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGY 654
+ VWG E D+ + VHI LRA + D P + LI T G GY
Sbjct: 183 ILQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 230
>gi|2984736|gb|AAC08021.1| (AF053960) response regulator protein
[Campylobacter jejuni]
Length = 223
Score = 110 bits (273), Expect = 1e-23
Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 3/220 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ +L+IED+ D A L +YL + + + + L++ + +D ++LDL LPG+DG+
Sbjct: 2 INVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGI-QGYDCLILDLTLPGIDGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EVCR++R ++ P+++ +AR L +K+ G GADDYL KP+ +E+ R+ +L RR
Sbjct: 61 EVCREIRQKSN--IPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118
Query: 361 KGLQTRVLETGDLEYNLDTL--EVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
K ++ E + + +D E+ K+L L P +IL+ L++ V+R+ L +R
Sbjct: 119 KRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILEYLIQQHGYSVSREQLVSR 178
Query: 535 VWGEELPDSDSLRVHIHGLRAVVDKPFDVPL-IQTRHGIGYRI 660
+ DS SL V I LR + P I + GIGY++
Sbjct: 179 CKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIGYKL 221
>gi|2500744|sp|Q47744|VANR_ENTFA REGULATORY PROTEIN VANRB
>gi|1209526 (U35369) response regulator [Enterococcus
faecalis]
Length = 220
Score = 110 bits (272), Expect = 1e-23
Identities = 70/220 (31%), Positives = 116/220 (51%), Gaps = 1/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL++ED+ I + +L E + VD DG + + ++LD+ LPGM+G
Sbjct: 3 IRILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGH 62
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
E+ R+ R A+ TP+LM+TA +N++ FD+ ADDY+ KPF ++ + R+ AL RR
Sbjct: 63 ELLREFR--AQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR- 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
G + G L + V G L L +IL L++ +T + + +R+W
Sbjct: 120 SGALAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIW 179
Query: 541 GEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
G + D ++ HI LRA + + +I+T G+GYR+
Sbjct: 180 GYDFDGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRL 216
>gi|3282774|gb|AAC25063.1| (AF043352) response regulator homolog
PhoB [Vibrio cholerae]
Length = 229
Score = 110 bits (272), Expect = 1e-23
Identities = 76/221 (34%), Positives = 115/221 (51%), Gaps = 3/221 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV+ED + I L LE++G+ A D + + D ++LD LPG GI
Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63
Query: 184 VCRKL-RNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ + + R E + PV+MLTAR ++K+ G + GADDY+ KPF+ +E+ RL A+ RR
Sbjct: 64 LIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123
Query: 361 KGLQTR-VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
V++ L+ + + V + L + PT K+L M V +R+ L V
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183
Query: 538 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
WG + D ++ VHI LR ++ LIQT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRPLRNALEDAGHDKLIQTVRGAGYRFST 227
>gi|1001717|dbj|BAA10554| (D64004) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 262
Score = 109 bits (271), Expect = 2e-23
Identities = 80/218 (36%), Positives = 123/218 (55%), Gaps = 15/218 (6%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEF---------DAIVLDL 156
RILV+ED I + L+E G+ V DG L A++ EF D I+LD+
Sbjct: 32 RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDAL--ALLQEFSEDPGQAAVDLIILDI 89
Query: 157 NLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVR 336
LP ++G++VCR LR TP+L+++A+ S K+TG + GADDY+ KPF+L+E+ R
Sbjct: 90 MLPQVNGLDVCRSLRFGG-DNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVAR 148
Query: 337 LNALSRRGKGLQTRVL----ETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPA 504
A+ RR +GL + + DL V RG+ + L P ++L+ M
Sbjct: 149 CRAMIRR-QGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRR 207
Query: 505 VVTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYR 657
V +R+ L +WG + + DS ++ VHI LR +++ P + T G GYR
Sbjct: 208 VWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYR 260
>gi|3913255|sp|Q54954|CIAR_STRPN TRANSCRIPTIONAL REGULATORY PROTEIN
CIAR >gi|1363429|pir||S49544 response regulator -
Streptococcus pneumoniae >gi|495276|emb|CAA54465|
(X77249) response regulator [Streptococcus pneumoniae]
Length = 224
Score = 109 bits (271), Expect = 2e-23
Identities = 70/218 (32%), Positives = 123/218 (56%), Gaps = 4/218 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED+ ++ ++ D+L++ + DG GL+ A +D I+LDL LP +G
Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQ-VFDGEEGLYEAESGVYDLILLDLMLPEKNGF 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+V ++LR E TPVL++TA++SLD+K GF+ GADDYL KPF L+E+++R+ AL +R
Sbjct: 61 QVLKELR-EKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 119
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
L G++ NL T V+ ++L +L ++ ++ + + R+W
Sbjct: 120 GKFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLW 179
Query: 541 GEELPDSDS----LRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
G DSD+ + V++ +R + +QT +GY
Sbjct: 180 GF---DSDTTISVVEVYVSKVRKKLKGTTFAENLQTLRSVGY 218
>gi|5830517|emb|CAB54564.1| (AJ005926) response regulator
[Streptococcus pneumoniae]
Length = 246
Score = 109 bits (271), Expect = 2e-23
Identities = 70/218 (32%), Positives = 123/218 (56%), Gaps = 4/218 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED+ ++ ++ D+L++ + DG GL+ A +D I+LDL LP +G
Sbjct: 24 IKILLVEDDLGLSNSVFDFLDDFADVMQ-VFDGEEGLYEAESGVYDLILLDLMLPEKNGF 82
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+V ++LR E TPVL++TA++SLD+K GF+ GADDYL KPF L+E+++R+ AL +R
Sbjct: 83 QVLKELR-EKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 141
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
L G++ NL T V+ ++L +L ++ ++ + + R+W
Sbjct: 142 GKFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLW 201
Query: 541 GEELPDSDS----LRVHIHGLRAVVDKPFDVPLIQTRHGIGY 654
G DSD+ + V++ +R + +QT +GY
Sbjct: 202 GF---DSDTTISVVEVYVSKVRKKLKGTTFAENLQTLRSVGY 240
>gi|1870001|emb|CAB06852| (Z92539) kdpE [Mycobacterium tuberculosis]
Length = 226
Score = 109 bits (269), Expect = 3e-23
Identities = 78/217 (35%), Positives = 110/217 (49%), Gaps = 5/217 (2%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+LVI+D I L L RG+ V A+ G L A H D ++LDL LP M GI+V
Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGLPDMSGIDV 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
LR PV++L+AR +K+ D+GADDY+ KPF + E RL A RR
Sbjct: 64 LGGLRGWL--TAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121
Query: 367 ---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
L+ V+ET +L +V + G + L PT +L+ L +V R +L V
Sbjct: 122 AAELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEV 181
Query: 538 WGEE-LPDSDSLRVHIHGL-RAVVDKPFDVPLIQTRHGIGYR 657
WG ++ LRV++ L R + D P + T G+GYR
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYR 223
>gi|2982999 (AE000683) transcriptional regulator (PhoB-like)
[Aquifex aeolicus]
Length = 228
Score = 108 bits (268), Expect = 4e-23
Identities = 69/218 (31%), Positives = 123/218 (55%), Gaps = 3/218 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RI +IED+ D+A + LE G V+ + D I++D+ LP +DG
Sbjct: 7 RIALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGFR 66
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ L++ A K+ PV+ +TA+ ++KL GF+ GADDY+ KPF+++E+ R+ A+ +R
Sbjct: 67 IANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRY 126
Query: 361 KGL-QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
K + +++VL+ +E + + ++ G+ + L P KIL+ LME V+R L ++
Sbjct: 127 KKVSESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKL 186
Query: 538 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 657
W E ++ ++ VH+ +R + K LI+T G+GY+
Sbjct: 187 WDYERETTERAIDVHVKHIRDKLGK--YKGLIKTVRGVGYK 225
>gi|4104602 (AF036966) putative response regulator [Lactobacillus
sakei]
Length = 237
Score = 108 bits (267), Expect = 5e-23
Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 11/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I+ + L + G+ V A DG L D I+LDL LP +DG+E
Sbjct: 4 KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVDGLE 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA-LSRRG 360
V R++R P++M+TA+DS +K+ G + GADDY+ KPF+ +E+ R+ A L R+G
Sbjct: 64 VARQVRKS--HDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQG 121
Query: 361 KGLQT--------RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 516
Q+ + GDL + + V +RG ++L ++L L + V+TR
Sbjct: 122 STSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTR 181
Query: 517 QDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
+ L VWG + D ++ V + LR + D P + TR G+GY + P+
Sbjct: 182 EHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPE 235
>gi|6460051|gb|AAF11793.1|AE002057_1 (AE002057) phosphate regulon
transcriptional regulatory protein PhoB [Deinococcus
radiodurans]
Length = 238
Score = 108 bits (266), Expect = 6e-23
Identities = 77/218 (35%), Positives = 111/218 (50%), Gaps = 3/218 (1%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
++VIED S + L +LE G V A + DA+VLD LPG GI
Sbjct: 4 VVVIEDESTVRDVLRFHLERAGLRVSAYASTQAAEEAGALAGADALVLDWMLPGESGIGF 63
Query: 187 CRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
R+LR + ++ PVLMLTAR + ++ G ++GADDYL KPF+ E+ R+ AL RR +
Sbjct: 64 LRRLRTDNDLRRLPVLMLTARAAEAERVEGLETGADDYLTKPFSAAELVARVRALLRRAQ 123
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
+ L G L +L E + G+ L L +L L V +R +L RVWG
Sbjct: 124 PETPQHLGNGPLTVDLAAAEAQLAGRTLNLTRREFDLLAFLTANAGRVYSRTELLDRVWG 183
Query: 544 EE-LPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRI 660
+ L ++ H+ LRA + D P ++T G GYR+
Sbjct: 184 ADFLGGERTVDQHVTQLRAHLGDDPGKPSFLETVRGKGYRM 224
>gi|3288064|emb|CAB09801| (Z97065) RisA protein [Bordetella
bronchiseptica] >gi|3288070|emb|CAA12131| (AJ224800)
RisA protein [Bordetella avium]
>gi|3288083|emb|CAA12132| (AJ224801) RisA protein
[Bordetella parapertussis] >gi|3288101|emb|CAA12129|
(AJ224798) RisA protein [Bordetella pertussis]
Length = 244
Score = 107 bits (265), Expect = 8e-23
Identities = 77/223 (34%), Positives = 113/223 (50%), Gaps = 10/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ + L YL E+G V A D L FD +VLDL LPG DG+
Sbjct: 11 KILVVDDDPRLRDLLRRYLSEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLS 70
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
+CR+LR TP++MLTA+ +++ G + GADDYL KPF +E+ R+NA+ RR
Sbjct: 71 ICRRLRG-GHDNTPIIMLTAKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRG 129
Query: 358 ------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 519
+ + G NL T + R G+ + + +L+ ++R
Sbjct: 130 TEEHPGAPSQENESIAFGPYVLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRD 189
Query: 520 DLETRVWGEELPDSD-SLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 672
L G E D SL V I LR +++ P IQT G+GY + PD
Sbjct: 190 KLMELARGREYEAFDRSLDVQISRLRKLIEPNPSKPVFIQTVWGLGY-VFVPD 241
>gi|130120|sp|P23620|PHOB_PSEAE PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|94799|pir||A37775 phoB
protein - Pseudomonas aeruginosa
Length = 229
Score = 107 bits (265), Expect = 8e-23
Identities = 74/220 (33%), Positives = 117/220 (52%), Gaps = 4/220 (1%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVV-HEFDAIVLDLNLPGMDGIE 183
IL+++D + I + +E G+ A+ H +V + I+LD LPG GIE
Sbjct: 6 ILIVDDEAPIREMIAVAVEMAGYEC-LEAENTQQAHAVIVDRKPHLILLDWMLPGTSGIE 64
Query: 184 VCRKL-RNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 357
+ R+L R+E P++MLTA+ DNK+ G ++GADDY+ KPF+ +E+ RL A+ RR
Sbjct: 65 LARRLKRDELTLDIPIIMLTAKGEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRRT 124
Query: 358 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
G G +E G L + + V GK ++ PT +LQ M TR +V
Sbjct: 125 GPGHSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYGLLQFFMTHQERAYTRGQRRDQV 184
Query: 538 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
WG + + ++ + I LR + + ++ L+QT G GYR +T
Sbjct: 185 WGGNVYVEERTVDMDIRRLRKALGEVYE-NLVQTVRGTGYRFST 227
>gi|1731206|sp|P54884|YV17_MYCLE HYPOTHETICAL SENSORY TRANSDUCTION
PROTEIN B2168_C3_248 >gi|2145927|pir||S72906 phosphate
sensor phoP - Mycobacterium leprae >gi|467058 (U00018)
phoP; B2168_C3_248 [Mycobacterium leprae]
Length = 198
Score = 107 bits (265), Expect = 8e-23
Identities = 66/175 (37%), Positives = 106/175 (59%), Gaps = 6/175 (3%)
Frame = +1
Query: 136 DAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFA 315
D ++LDL LPGM G +V ++LR R PV+M+TARDS +K+ G + GADDY+ KP++
Sbjct: 18 DIVLLDLMLPGMSGTDVYKQLR--VRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYS 75
Query: 316 LQEVEVRLNALSRRG----KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQA 483
+E+ R+ A+ RRG + VLE+G L +++ V G + L +L+
Sbjct: 76 ARELIARIRAVLRRGGDDDSEISDGVLESGPLRMDVERHVVSVNGYAITLPLKEFDLLEY 135
Query: 484 LMEATPAVVTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYR 657
LM + V+TR L RVWG + + D+ +L VH+ LR+ ++ P + + T G+GY+
Sbjct: 136 LMRNSGRVLTRGQLIDRVWGVDYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYK 195
Query: 658 I 660
+
Sbjct: 196 L 196
>gi|6689352|emb|CAB65451.1| (AJ012051) VicR protein [Streptococcus
pyogenes]
Length = 239
Score = 107 bits (265), Expect = 8e-23
Identities = 72/223 (32%), Positives = 125/223 (55%), Gaps = 13/223 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+IL+++D I+ + L + G+ + A DG + + + D I+LDL LP +DG+E
Sbjct: 6 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 65
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
V +++R + P++ML+A+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR +
Sbjct: 66 VAKEIRKTSH--VPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 123
Query: 364 GLQTRVLE-----------TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVV 510
++T V E G+L+ D ++ G+ ++L ++L L V+
Sbjct: 124 TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 183
Query: 511 TRQDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
TR+ L VWG + D ++ V + LR + D P I TR G+GY + + D
Sbjct: 184 TREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD 239
>gi|130119|sp|P08402|PHOB_ECOLI PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|73044|pir||RGECFB phosphate
regulon regulatory protein phoB - Escherichia coli
>gi|42388|emb|CAA27659| (X04026) phoB protein (aa 1-229)
[Escherichia coli] >gi|1657595|gb|AAB18123.1| (U73857)
phosphate regulon transcriptional regulatory protein
phoB [Escherichia coli] >gi|1786599 (AE000146) positive
response regulator for pho regulon, sensor is PhoR (or
CreC) [Escherichia coli]
Length = 229
Score = 107 bits (264), Expect = 1e-22
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV+ED + I + LE+ G A D + ++ D I+LD LPG GI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ L+ E+ + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 361 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+ V+E L + + V + L++ PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183
Query: 538 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
WG + D ++ VHI LR ++ ++QT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227
>gi|1172482|sp|P45606|PHOB_SHIDY PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|280132|pir||A44753 phoB
protein - Shigella dysenteriae >gi|152773 (M31793)
phosphate regulatory protein phoB [Shigella dysenteriae]
Length = 229
Score = 107 bits (264), Expect = 1e-22
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV+ED + I + LE+ G A D + ++ D I+LD LPG GI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ L+ E+ + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 361 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+ V+E L + + V + L++ PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183
Query: 538 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
WG + D ++ VHI LR ++ ++QT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227
>gi|541208|pir||S41887 ompR protein - Salmonella typhi
Length = 239
Score = 107 bits (264), Expect = 1e-22
Identities = 75/223 (33%), Positives = 121/223 (53%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ V+ G + NL T E+ R + + L +L+AL+ ++R +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDN 184
Query: 523 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 672
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|3236110|emb|CAA04532| (AJ001103) arcA [Lactococcus lactis]
Length = 233
Score = 106 bits (263), Expect = 1e-22
Identities = 75/222 (33%), Positives = 119/222 (52%), Gaps = 9/222 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I+ + L + G V A DG L + D I+LDL LP +DG++
Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
V R++R + TP++M++A+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 63 VAREIRKTS--DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRIN 120
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ L G+L N + GK L L ++L L + V+TR++
Sbjct: 121 VAPAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITREN 180
Query: 523 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATP 669
L VWG + D ++ V + LR V D P + TR G+GY ++ P
Sbjct: 181 LLETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYMSNP 231
>gi|129158|sp|P03025|OMPR_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
OMPR >gi|453287 (J01656) OmpR protein [Escherichia coli]
>gi|602089|emb|CAA54510| (X77305) ompR [Salmonella
typhi] >gi|606339|gb|AAA58202.1| (U18997) CG Site No.
434; alternate name ompB [Escherichia coli] >gi|1789809
(AE000416) response regulator (sensor, EnvZ) affecting
transcription of ompC and ompF: outer membrane protein
synthesis [Escherichia coli]
Length = 239
Score = 106 bits (262), Expect = 2e-22
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ V+ G + NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184
Query: 523 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 672
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|2108342|emb|CAA70146| (Y08950) OmpR protein [Yersinia
enterocolitica]
Length = 239
Score = 106 bits (262), Expect = 2e-22
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ V+ G + NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 NELPGAPSQEETVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184
Query: 523 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 672
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|4336895|gb|AAD18001| (AF110496) putative His-Asp response
regulator [Heterosigma akashiwo]
>gi|5420157|emb|CAB46638.1| (AJ237941) transcriptional
regulatory gene 1 [Heterosigma akashiwo]
Length = 231
Score = 106 bits (262), Expect = 2e-22
Identities = 65/218 (29%), Positives = 114/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D I L L+ G+ V G + L D I+LD+ L G++G E
Sbjct: 8 KILVVDDQLYIRKILSKRLKILGYEVLTTQSGEEAIKLCSFFCPDLIILDIMLCGINGYE 67
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
VC K+R+ + P++ ++A D L N+L GF G +D+++KPF++ E+E ++ +
Sbjct: 68 VCSKIRSSS--DVPIIFISALDKLSNQLKGFRIGGNDFIVKPFSIDEIEEKILLRLKNEN 125
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 543
+ + + E NL + R ++ L PT K+L+ + ++TR+ + RVWG
Sbjct: 126 NKEKSTIRIHNFEINLIKKVLIRNSEIFLLTPTETKLLKVFLLEKNKILTRKTIIKRVWG 185
Query: 544 EELPDSDSLR---VHIHGLRA-VVDKPFDVPLIQTRHGIGYR 657
+R V+I LR + D P + +++T GIGY+
Sbjct: 186 FNYSSHIDIRVVDVYISKLRVKIEDDPTNPQILKTIRGIGYK 227
>gi|1747435 (U39673) KdpE [Clostridium acetobutylicum]
Length = 232
Score = 105 bits (260), Expect = 3e-22
Identities = 69/218 (31%), Positives = 114/218 (51%), Gaps = 7/218 (3%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
ILV+ED+ I + L +G+ G + L++ + D IVLDL LP +DGIEV
Sbjct: 7 ILVVEDDKPIRNFITTALSTQGYKYSETDKGNEAIALSMANSPDLIVLDLGLPDIDGIEV 66
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR---- 354
K+R ++ P+++++AR++ K+ D GADDY+ KPF + E+ R+ R
Sbjct: 67 IGKIREWSK--VPIIIVSARENERQKVEALDKGADDYITKPFGIGELLARIRVSLRHVNA 124
Query: 355 -RGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ K + +L + + V GK + L P KI+ L + + V+T +
Sbjct: 125 GKAKDKSIDFFKVKNLSVDFEKRRVSVNGKEVHLTPIEYKIMFLLCKYSGRVLTHNFIIN 184
Query: 532 RVWGEEL-PDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRI 660
+WG + ++ SLRV + LR ++K P I T G+GYR+
Sbjct: 185 EIWGASVGNENQSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRL 229
>gi|1172483|sp|P45607|PHOB_SHIFL PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|2120000|pir||S61298
transcriptional activator phoB - Shigella flexneri
>gi|531494|emb|CAA56927| (X81000) phoB [Shigella
flexneri]
Length = 229
Score = 105 bits (260), Expect = 3e-22
Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV+ED + I + LE+ G A D + ++ D I+LD LPG GI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ L+ E+ + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 361 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+ V++ L + + V + L++ PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPELVYSREQLLNHV 183
Query: 538 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
WG + D ++ VHI LR ++ ++QT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227
>gi|2313252|gb|AAD07234.1| (AE000537) response regulator (ompR)
[Helicobacter pylori 26695]
Length = 225
Score = 105 bits (259), Expect = 4e-22
Identities = 73/220 (33%), Positives = 123/220 (55%), Gaps = 7/220 (3%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ +L+IED+ ++A L ++L + G V + TG+ A +D ++LDL LP +DG+
Sbjct: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGL 61
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EVCR++ + K P+++ +AR +++K+ D GADDYL KP+ +E+ R+ +L RR
Sbjct: 62 EVCRRISKQ--KHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRS 119
Query: 361 KGLQTRVLETGD---LEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ V E GD + D+ EV K L L +IL L+ V +R+ +
Sbjct: 120 H-KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI-- 176
Query: 532 RVWGEEL-PDSD--SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRI 660
+ E + P+S S+ V I LR+ ++K P I + GIGY++
Sbjct: 177 AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKL 223
>gi|1172481|sp|P45605|PHOB_KLEPN PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|280103|pir||C44753 phoB
protein - Klebsiella pneumoniae >gi|149295 (M31794)
phosphate regulatory protein phoB [Klebsiella
pneumoniae]
Length = 229
Score = 105 bits (259), Expect = 4e-22
Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 3/220 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RILV+ED + I + LE+ G A D + ++ D I+LD LPG G++
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63
Query: 184 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ L+ EA + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 361 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+ V+E L + + V L + PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183
Query: 538 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 663
WG + D ++ VHI LR ++ ++QT G GYR +
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRFS 226
>gi|4104605 (AF036967) putative response regulator [Lactobacillus
sakei]
Length = 228
Score = 104 bits (258), Expect = 6e-22
Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGL-HLAVVHEFDAIVLDLNLPGMDG 177
++IL+++D+ +I L Y++ G+ A G L +A D ++LD+ +P M G
Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMSG 60
Query: 178 IEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 357
IEV + +R ++ Q P+L+++A+ + +K+ G +GADDY+ KPF EV R+ +L RR
Sbjct: 61 IEVIKAVRKDS--QVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRR 118
Query: 358 GKGLQTR----VLETGDLEYNLDTLEVRR-RGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ T +LE G L D+ EV GK +QL IL L V + D
Sbjct: 119 SQQQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADD 178
Query: 523 LETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFD-VPLIQTRHGIGYRI 660
+ RVW +E + + ++ VH+ LR +++ D +I+T G+GY++
Sbjct: 179 IFERVWKQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKV 226
>gi|129160|sp|P08981|OMPR_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN
OMPR >gi|79118|pir||S01366 regulatory protein ompR -
Salmonella typhimurium >gi|47664|emb|CAA30934| (X12374)
ompR regulatory protein (AA 1 - 239) [Salmonella
typhimurium] >gi|587570|emb|CAA55076| (X78270) ompR
[Salmonella typhi]
Length = 239
Score = 104 bits (257), Expect = 7e-22
Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 357
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ + RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQA 124
Query: 358 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
+ V+ G + NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184
Query: 523 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 672
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|4154653 (AE001453) putative TRANSCRIPTIONAL REGULATOR
[Helicobacter pylori J99]
Length = 225
Score = 104 bits (257), Expect = 7e-22
Identities = 73/220 (33%), Positives = 123/220 (55%), Gaps = 7/220 (3%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ +L+IED+ ++A L ++L + G V + TG+ A +D ++LDL LP +DG+
Sbjct: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVINYDEPYTGISAANTQNYDLLLLDLTLPNLDGL 61
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EVCR++ + K P+++ +AR +++K+ D GADDYL KP+ +E+ R+ +L RR
Sbjct: 62 EVCRRISKQ--KHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRS 119
Query: 361 KGLQTRVLETGD---LEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ V E GD + D+ EV K L L +IL L+ V +R+ +
Sbjct: 120 H-KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI-- 176
Query: 532 RVWGEEL-PDSD--SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRI 660
+ E + P+S S+ V I LR+ ++K P I + GIGY++
Sbjct: 177 AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKL 223
>gi|4583523|gb|AAD25108.1|AF140356_1 (AF140356) VncR [Streptococcus
pneumoniae] >gi|5830544|emb|CAB54582.1| (AJ006399)
response regulator [Streptococcus pneumoniae]
Length = 218
Score = 104 bits (257), Expect = 7e-22
Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL++ED I + DYL + G+ AADG L +E ++LD+ +P ++G+
Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EV ++R + Q PVLMLTA + K++ F S AD YL KPF+L ++VR++A+ +R
Sbjct: 61 EVLAEIRKTS--QVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY 118
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
R+ D + + ++ G+ + +N L+IL L++ +TR + VW
Sbjct: 119 YD-TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVW 177
Query: 541 --GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
+E+P + V+I LR K D+ I T +GY++
Sbjct: 178 KATDEVPFDRVIDVYIKELR----KKLDLDCILTVRNVGYKL 215
>gi|5353563|gb|AAD42180.1|AF130997_1 (AF130997) response regulator
[Enterococcus faecium]
Length = 232
Score = 104 bits (256), Expect = 1e-21
Identities = 78/219 (35%), Positives = 119/219 (53%), Gaps = 11/219 (5%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D ++A + YL+ G+ V +G L E D +LD+ LP +DG +
Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+C+K+R + PV+MLTA+ +K+ G S ADDY+ KPF EV R+ A R+
Sbjct: 64 ICQKIRE--KFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLEVVARVKAQLRQYM 120
Query: 364 GLQTRVL--ETGDLEYNLDTLEVRRR-------GKLLQLNPTGLKILQALMEATPAVVTR 516
+ L E EY++ + + + GK +QL PT IL L E VV+
Sbjct: 121 RYKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVST 180
Query: 517 QDLETRVWGEELPDS-DSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 660
++L VWGE DS +++ HI LR + +P P I+T G+GY I
Sbjct: 181 EELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230
>gi|1070667|pir||RGECOR osmosensor response regulator ompR -
Escherichia coli
Length = 239
Score = 104 bits (256), Expect = 1e-21
Identities = 74/221 (33%), Positives = 118/221 (52%), Gaps = 9/221 (4%)
Frame = +1
Query: 10 LVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVC 189
LV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+ +C
Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67
Query: 190 RKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR---- 357
R+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 68 RRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126
Query: 358 ---GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 528
+ V+ G + NL T E+ R + + L +L+AL+ ++R L
Sbjct: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186
Query: 529 TRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 672
G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|79509|pir||S22632 petR protein - Rhodobacter capsulatus
>gi|2654368|emb|CAA78098| (Z12113) protein of unknown
function [Rhodobacter capsulatus]
Length = 237
Score = 103 bits (254), Expect = 2e-21
Identities = 73/222 (32%), Positives = 117/222 (51%), Gaps = 10/222 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+L+++D+ I L +L G V D L EF+ IVLD+ +PG DG+ +
Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLLSGLEFNLIVLDVMMPGEDGLSL 68
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R LR + TP+L+LTAR ++ G ++GADDYL KPF +E+ +R+NA+ RR
Sbjct: 69 TRDLRT--KMATPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRRVPE 126
Query: 367 LQT---RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL---- 525
T + L G L Y+LD E+ + + ++L T +++ V+ R +L
Sbjct: 127 AVTAGPKYLSLGPLRYDLDRGELSQGDQPVRLTATEAALMRIFAAHAGEVIGRTELIEEL 186
Query: 526 --ETRVWGEELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 672
+ EE ++ V I LR ++ P + +QT G+GY +A PD
Sbjct: 187 GRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRYLQTVRGLGYMLA-PD 237
>gi|6127220|gb|AAF04314.1| (AF150928) putative 2-component
regulatory protein [Acinetobacter sp. ADP1]
Length = 226
Score = 102 bits (253), Expect = 2e-21
Identities = 63/224 (28%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++IL IED+ I L VD+A G+ L + ++LDL LP ++G+
Sbjct: 2 IKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEGL 61
Query: 181 EVCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 357
+V + +R + + V++++ARD +K+ G GADDY++KP+ E+ R+ ++ RR
Sbjct: 62 DVLKHIRKKIELNKIAVIIISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVLRR 121
Query: 358 GK--GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
G L G ++ +T + + G+ + L+ IL+ +M + ++Q LE
Sbjct: 122 GNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEWSILEPMMMYPNQIFSKQMLEE 181
Query: 532 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
+++ ++ +S+++ VHIH LR + K F I+ G+GY + T +
Sbjct: 182 KLYDCDDEINSNTIEVHIHNLRQKLGKDF----IRNVRGLGYCVETQE 225
>gi|1001817|dbj|BAA10698| (D64005) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 234
Score = 102 bits (252), Expect = 3e-21
Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 11/219 (5%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH--EFDAIVLDLNLPGMD 174
+RIL++ED +D+ + L + VD+ DG E+ ++D LPG+
Sbjct: 1 MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
Query: 175 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 354
G+E+C+KLR + PVLMLTA +N++ G D+GADDYL KPF + E+ RL AL R
Sbjct: 61 GLELCQKLRTQGNS-LPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQR 119
Query: 355 RGKGLQTRVLETG----DLEYNLDTLEVRRRGKL----LQLNPTGLKILQALMEATPAVV 510
R Q ++L G D NL ++ + L + L +I Q LM+ ++
Sbjct: 120 RSPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERII 179
Query: 511 TRQDLETRVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 657
+ + ++W +E P S+ + + +R + + I+T G GYR
Sbjct: 180 SGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYR 229
>gi|5759261|gb|AAD51056.1|AF175293_1 (AF175293) response regulator
[Enterococcus faecium]
Length = 232
Score = 102 bits (252), Expect = 3e-21
Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 14/219 (6%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D ++A + YL+ G+ V +G L E D +LD+ LP +DG +
Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR--- 354
+C+K+R + PV+MLTA+ +K+ G S ADDY+ KPF E+ R+ A R
Sbjct: 64 ICQKIRE--KFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLELVARVKAQLRQYM 120
Query: 355 --RGKGLQTRVLETGDLEYNLDTLEVRRR-------GKLLQLNPTGLKILQALMEATPAV 507
+ G++ T EY++ + + + GK +QL PT IL L E V
Sbjct: 121 RYKQPGIKQEAERT---EYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTV 177
Query: 508 VTRQDLETRVWGEELPDS-DSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 660
V+ ++L VWGE DS +++ HI LR + +P P I+T G+GY I
Sbjct: 178 VSTEELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230
>gi|2502067 (AF026542) ScnR [Streptococcus pyogenes]
Length = 232
Score = 101 bits (250), Expect = 5e-21
Identities = 64/219 (29%), Positives = 120/219 (54%), Gaps = 3/219 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVT-GLHLAVVHEFDAIVLDLNLPGMDGI 180
RIL+++D+ ++ ++ + L R A ++ G+ + V + D I+LD+ LP +G
Sbjct: 11 RILIVDDDVALSKSIKEVLISRDFKNISCAYSISEGIDIFSVSKIDLIILDVMLPDGEGH 70
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ + +R + P+L LTA+++ D+++ G +SG DDY+ KPF + + R+ AL RR
Sbjct: 71 LLAKYIRKYS--DVPILFLTAKNNPDDEIRGLESGGDDYVTKPFLPKSLTYRIIALLRRA 128
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
++ ++E + +L+ V + G+ L L PT ++IL+ L + + + + VW
Sbjct: 129 YKDESELIELTNCTIDLNNASVEKNGQHLSLTPTEIQILRKLFSNKNYIASTESICDTVW 188
Query: 541 G-EELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRI 660
G E L SL VHI +R ++ P + T G+GY++
Sbjct: 189 GLESLGYEKSLMVHIRNIREKIEITPSKPNHLITVKGLGYKL 230
>gi|6137054|emb|CAB59609.1| (AL132662) putative response regulator
[Streptomyces coelicolor A3(2)]
Length = 238
Score = 101 bits (248), Expect = 8e-21
Identities = 70/220 (31%), Positives = 110/220 (49%), Gaps = 6/220 (2%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+LV+ED+ I A L + L G+AV A G L D +VLDL LP +DG++V
Sbjct: 13 VLVVEDDPVIRAALIEVLTGHGYAVKTAHQGFEALRDITQSPPDIVVLDLGLPDLDGLDV 72
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 360
R +R +R PVL+ TARD + ++GADDY++KPF+ ++ RL A+ RR
Sbjct: 73 LRMIRGISR--VPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSAP 130
Query: 361 ---KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+ + VL DL + G+ L L +L L V++RQ +
Sbjct: 131 AGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRILA 190
Query: 532 RVWGEELPDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIAT 666
VW + + ++ VH+ LR + + P + T GIG ++ +
Sbjct: 191 EVWQQPYVEDQTVDVHLSALRRKMGEKARKPRYLHTVRGIGIKLVS 236
>gi|1176993|sp|P42421|YXDJ_BACSU HYPOTHETICAL 26.6 KD SENSORY
TRANSDUCTION PROTEIN IN IDH 3'REGION
>gi|709991|dbj|BAA03300| (D14399) hypothetical protein
[Bacillus subtilis] >gi|2636512|emb|CAB16002| (Z99124)
similar to two-component response regulator [YxdK]
[Bacillus subtilis]
Length = 229
Score = 100 bits (247), Expect = 1e-20
Identities = 63/219 (28%), Positives = 123/219 (55%), Gaps = 7/219 (3%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+I+++ED+ DI L +YLE+ G+ AAD L + + + D ++LD+NLP DG
Sbjct: 3 KIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYY 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
CR++R + +P++ ++AR +++ ++G DDY+ KPF+ V ++ + RR
Sbjct: 63 WCRQIRQHS--TSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAY 120
Query: 364 GLQT-----RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 528
G +V+E ++ ++ E+R + + +L+ K+L+ L+E V +R L
Sbjct: 121 GEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTSRDRLM 180
Query: 529 TRVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPL-IQTRHGIGYRI 660
+ W ++ D ++L V+I LR + + + P+ I+ G GY++
Sbjct: 181 EKTWDTDIFIDDNTLNVYITRLRKKL-RELNAPVSIEAVRGEGYQL 225
>gi|4103328 (AF022772) response regulator [Erwinia carotovora subsp.
carotovora]
Length = 227
Score = 100 bits (247), Expect = 1e-20
Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 3/223 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RILV+EDN + +L + E GH VD A+D + + D ++DL LP DG+
Sbjct: 1 MRILVVEDNVLLLHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPDEDGM 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ R+ R K P+L+LTAR+ KL + DDY+ KPF ++EV RL AL RR
Sbjct: 61 SMIRRWRANQAK-LPILVLTAREGWQTKLPCWKP-CDDYVTKPFHMEEVVARLQALMRRN 118
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
GL ++++ E +L + E+ ++L I++ L+ T VV++ L +++
Sbjct: 119 SGLASQIISLPPFEVDL-SRELVIHSTPIKLTAFEYTIIETLIRNTGKVVSKDSLMLQLY 177
Query: 541 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR--IATP 669
+ EL +S ++ V + LR + + +I T G GYR I TP
Sbjct: 178 PDAELRESHTIDVLMGRLRKKIQQADAPDVITTVRGQGYRFDIDTP 223
>gi|485521|pir||S33662 rprY protein - Bacteroides fragilis
Length = 236
Score = 99.1 bits (243), Expect = 3e-20
Identities = 60/224 (26%), Positives = 119/224 (52%), Gaps = 4/224 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL+ ED+ ++ L +YL+ +G++ + DG G + +++D V D+ +P DG
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGF 67
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ +++R A + P++ LTA+ ++ L GF GADDY+ KPF+++E+ R+ A+ RR
Sbjct: 68 TLAQEVR-AANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRRV 126
Query: 361 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+G ++ + + G ++ + K +L ++L L ++ R
Sbjct: 127 RGKKNKESNIYKIGKFTFDTQKQILAIGDKQTKLTTKESELLGLLCAHANEILQRDFALK 186
Query: 532 RVW-GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
+W + ++ S+ V+I LR + + +I HG GY++ TP+
Sbjct: 187 TIWIDDNYFNARSMDVYITKLRKHLKDDDSIEIINI-HGKGYKLITPE 233
>gi|4981814|gb|AAD36333.1|AE001781_4 (AE001781) phosphate regulon
transcriptional regulatory protein PhoB [Thermotoga
maritima]
Length = 229
Score = 99.1 bits (243), Expect = 3e-20
Identities = 64/222 (28%), Positives = 118/222 (52%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
V++L+ ED+ DI + L YLE G+ D A ++ ++LDL P +
Sbjct: 6 VKVLIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFPDGVAM 65
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ +++ + + +++++ARD +++ G + GADDY+ KPF +EV R+ A+ RR
Sbjct: 66 DEIPEMK-VSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRR- 123
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
G + +VL G LE + VR GK +++ ++L+ L V +R+++ RVW
Sbjct: 124 MGKEQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVW 183
Query: 541 GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
G++ + VHI +R+ + K + I+T G+GY+ +T
Sbjct: 184 GDDYVSDRVVDVHISAIRSKIGKGW----IKTVRGLGYKFST 221
>gi|1653736|dbj|BAA18647| (D90916) transcriptional regulatory
protein [Synechocystis sp.]
Length = 250
Score = 99.1 bits (243), Expect = 3e-20
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 3/219 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAI-VLDLNLPGMDG 177
V I V+E N + + L +L++ G+ V G A ++ + V+D +L DG
Sbjct: 4 VYISVVEGNPHLRSLLSWHLQQSGYLVQ-QCSGFHQARQAFNNQLPTLAVIDSDLTDGDG 62
Query: 178 IEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 357
IE+CR L + Q+ + +L+A+D+ + + G +GADDYL KPF +QE R+ L RR
Sbjct: 63 IELCRWLYQQ--HQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR 120
Query: 358 GKGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
+ + +L+ G L+ +L V +G + L P +L L +A + ++R +L R
Sbjct: 121 VRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR 180
Query: 535 VWGEELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYR 657
W E + + ++ H+ LR ++ P LIQT +GYR
Sbjct: 181 AWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYR 222
>gi|3367760|emb|CAA20085| (AL031155) putative two-component
regulator [Streptomyces coelicolor]
Length = 204
Score = 97.9 bits (240), Expect = 7e-20
Identities = 69/192 (35%), Positives = 99/192 (50%), Gaps = 1/192 (0%)
Frame = +1
Query: 88 AADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKL 267
A DG T L LA A VLD+ LP DG +VC+ +R +PV+ LTA L+++L
Sbjct: 16 APDGATALRLATPG-ISAAVLDVGLPDADGRDVCQAMRANGFL-SPVIFLTAHHRLNDRL 73
Query: 268 TGFDSGADDYLIKPFALQEVEVRLNALSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLL 447
+GF +G DDYL KPF L E+ RL A +R + GDL + V RG +
Sbjct: 74 SGFSAGGDDYLPKPFHLTELAARLRAALKRAAPPPSAT--AGDLALDAVRHVVSVRGTRV 131
Query: 448 QLNPTGLKILQALMEATPAVVTRQDLETRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVP 624
L PT ++L ALM A+ +V R++L W E ++L ++ LR +
Sbjct: 132 DLTPTEFRLLAALMAASGNIVRRRELVRAAWPEGAQVHENTLDQYLTRLRRKLRAAGSDR 191
Query: 625 LIQTRHGIGYRIA 663
I T GIG+R++
Sbjct: 192 TIGTARGIGHRLS 204
>gi|2126761|pir||I40084 gtcR protein - Bacillus brevis
>gi|468745|emb|CAA55264| (X78502) gtcR [Brevibacillus
brevis]
Length = 242
Score = 96.3 bits (236), Expect = 2e-19
Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 11/222 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
IL+ +D +I L +LE + + A DG + H D ++D+ +P +DG ++
Sbjct: 5 ILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALDGFQL 64
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 360
++L NE + PV++L+A++ +K+ G GADD++ KPF E R+ A RR
Sbjct: 65 IKRLTNEYK--LPVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRRAFE 122
Query: 361 ------KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEAT-PAVVTRQ 519
K + T+ G L V R + + P ++L M+ + ++ T+Q
Sbjct: 123 FNEPEEKAISTQSTTVGRLTLLHTACVVYRGDETYSVTPLEYRLLNTFMQCSRTSIFTKQ 182
Query: 520 DLETRVWGEEL-PDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 672
L + W E D +++ V I LR + D+P I+T G+GY+ A+ D
Sbjct: 183 QLFEQAWSETYWEDDNTIMVQISRLRDKIEDQPRQPVYIKTVRGLGYKFASKD 235
>gi|299503|bbs|129436 RprY=inner membrane signal-transducing protein
[Bacteroides fragilis, Peptide, 236 aa]
Length = 236
Score = 96.3 bits (236), Expect = 2e-19
Identities = 59/224 (26%), Positives = 118/224 (52%), Gaps = 4/224 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+RIL+ ED+ ++ L +YL+ +G++ + DG G + +++D V D+ +P DG
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGF 67
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ +++R A + P++ LTA+ ++ L GF GADDY+ KPF+++E+ + A+ RR
Sbjct: 68 TLAQEVR-AANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFYIEAILRRV 126
Query: 361 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 531
+G ++ + + G ++ + K +L ++L L ++ R
Sbjct: 127 RGKKNKESNIYKIGKFTFDTQKQILAIGDKQTKLTTKESELLGLLCAHANEILQRDFALK 186
Query: 532 RVW-GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 672
+W + ++ S+ V+I LR + + +I HG GY++ TP+
Sbjct: 187 TIWIDDNYFNARSMDVYITKLRKHLKDDDSIEIINI-HGKGYKLITPE 233
>gi|1705849|sp|Q07783|CHVI_AGRTU PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN CHVI >gi|304125 (L19166) putative [Agrobacterium
tumefaciens]
Length = 241
Score = 94.8 bits (232), Expect = 6e-19
Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
I +++D+ +I ++ LE G+ V+ DG + + + + D+ +P MDG+E+
Sbjct: 4 IALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGMEL 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R+LR ++ PV+ LT++D ++L G GADD++ KPF+ + + R+ A+ RR
Sbjct: 64 LRRLRQKS--DIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASS 121
Query: 367 ----------------LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEAT 498
Q R LE G L + + +G+ + L T IL +L A
Sbjct: 122 REASAATGGTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSLAPAA 181
Query: 499 PAVVTRQDLETRVWGEEL-PDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIA 663
R L + E++ D ++ HI LR +VD FD +I+T +G+GYR A
Sbjct: 182 GRGEKRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKLVDGDFD--MIETLYGVGYRFA 238
>gi|3025460 (U58131) PhoP [Clostridium acetobutylicum]
Length = 217
Score = 94.4 bits (231), Expect = 8e-19
Identities = 62/220 (28%), Positives = 118/220 (53%), Gaps = 1/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ IL+IED++ I+ + L G+ + +G L L FD I+LD+ LP +DG
Sbjct: 2 INILIIEDDAAISNLIKLNLNMAGYISEAVYNGEAALDLIEGRNFDLILLDIMLPKIDGF 61
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ +K++ K PV+ LTA+ S+ +K++G GADDY+ KPF E+ R++ + R
Sbjct: 62 SLFQKIKY---KGIPVIFLTAKTSVTDKVSGLRMGADDYITKPFDGMELLARIDNVLRH- 117
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ L+ D+E L+ + +++ G+++ L ++ L++ V+TR+ + +W
Sbjct: 118 YDKNEKSLKFEDIEVQLEEMRLKKNGQIIDLTVKEFELAAYLIKNKNIVLTRERIAEELW 177
Query: 541 G-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
G + L D ++ +I +R +D ++T +GYR+
Sbjct: 178 GYDYLGDCRTIDNYIQKIRKKLDWK---DKVKTIFKMGYRL 215
>gi|3860984|emb|CAA14884| (AJ235271) PETR PROTEIN (ompR) [Rickettsia
prowazekii]
Length = 225
Score = 93.6 bits (229), Expect = 1e-18
Identities = 60/220 (27%), Positives = 118/220 (53%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ IL+++D+S I A L +L + V A + +L +D I+LD+ LP + G+
Sbjct: 6 IHILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNYDLIILDVMLPRITGL 65
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL-SRR 357
+ +R +A P++MLTA ++++ G ++GA DY+ KPF +E+ +R+N L +
Sbjct: 66 DFATTIR-DAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNY 124
Query: 358 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 537
+T +++ G+ YN T E + +++ L+ T K+L+ L++ + +R +L +
Sbjct: 125 NFKKETNIIKFGNNFYNCTTKEFTKNDQIVSLSSTEHKLLEILIKNSGKSTSRFELSKIM 184
Query: 538 WGEELPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRI 660
G + S+ V I +R+ + D P + ++T GY +
Sbjct: 185 GGLSM---RSIDVQITRIRSKIEDNPKEPKYLKTVRNEGYAL 223
>gi|625683|pir||A49903 phosphate regulatory protein ChvI -
Agrobacterium tumefaciens
Length = 241
Score = 93.2 bits (228), Expect = 2e-18
Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
I +++D+ +I ++ LE G+ V+ DG + + + + D+ +P MDG+E+
Sbjct: 4 IALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGMEL 63
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
++LR ++ PV+ LT++D ++L G GADD++ KPF+ + + R+ A+ RR
Sbjct: 64 LQRLRQKS--DIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASS 121
Query: 367 ----------------LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEAT 498
Q R LE G L + + +G+ + L T IL +L A
Sbjct: 122 REASAATGGTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSLAPAA 181
Query: 499 PAVVTRQDLETRVWGEEL-PDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIA 663
R L + E++ D ++ HI LR +VD FD +I+T +G+GYR A
Sbjct: 182 GRGEKRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKLVDGDFD--MIETLYGVGYRFA 238
>gi|6093700|sp|P31079|PETR_RHOCA PETR PROTEIN
Length = 245
Score = 91.3 bits (223), Expect = 7e-18
Identities = 77/222 (34%), Positives = 119/222 (52%), Gaps = 20/222 (9%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH--EFDAIVLDLNLPGMDGI 180
+L+++D+ I L +L G V D L + EF+ IVLD+ +PG DG+
Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLFTLSGLEFNLIVLDVMMPGEDGL 68
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLI--KPFALQEVEVRLNALSR 354
+ R LR + TP+L+LTAR ++ G ++GADDYL KPF +E+ +R+NA+ R
Sbjct: 69 SLTRDLRT--KMATPILLLTARGETRERIEGLEAGADDYLFTPKPFEPKELLLRINAILR 126
Query: 355 RGKGLQT---RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPA----VVT 513
R T + L G L Y+LD E+ + + ++L T + ALM A V+
Sbjct: 127 RVPEAVTAGPKYLSLGPLRYDLDRGELSQGDQPVRL--TATEAFTALMRIFAAHAGEVIG 184
Query: 514 RQDL------ETRVWGEELPDSDSLRVHIHGLRAVVDKPFDVP---LIQTRHGIGYRIAT 666
R +L + EE ++ V I LR ++ P +QT G+GY +A
Sbjct: 185 RTELIEELGRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRFTYLQTVRGLGYMLA- 243
Query: 667 PD 672
PD
Sbjct: 244 PD 245
>gi|2613088|gb|AAB84278.1| (AF030316) OmpR [Yersinia enterocolitica]
Length = 192
Score = 90.9 bits (222), Expect = 9e-18
Identities = 62/180 (34%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Frame = +1
Query: 133 FDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPF 312
F +VLDL LPG DG+ +CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF
Sbjct: 2 FHLMVLDLMLPGEDGLSICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPF 60
Query: 313 ALQEVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLK 471
+E+ R+ A+ RR + V+ G + NL T E+ R + + L
Sbjct: 61 NPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFA 120
Query: 472 ILQALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHG 645
+L+AL+ ++R L G E + S+ V I LR +V++ P IQT G
Sbjct: 121 VLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWG 180
Query: 646 IGYRIATPD 672
+GY + PD
Sbjct: 181 LGY-VFVPD 188
>gi|2613084|gb|AAB84276.1| (AF030314) OmpR [Shigella flexneri]
Length = 192
Score = 89.3 bits (218), Expect = 3e-17
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Frame = +1
Query: 133 FDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPF 312
F +VLDL LPG DG+ +CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF
Sbjct: 2 FHLMVLDLMLPGEDGLSICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPF 60
Query: 313 ALQEVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLK 471
+E+ R+ A+ RR + V+ G + NL T E+ R + + L
Sbjct: 61 NPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTRREFA 120
Query: 472 ILQALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGL-RAVVDKPFDVPLIQTRHG 645
+L+AL+ ++R L G E + S+ V I L R V + P IQT G
Sbjct: 121 VLKALVSHPRDALSRDKLMNLARGREYSAMERSIDVQISRLARMVEEDPAHPRYIQTVWG 180
Query: 646 IGYRIATPD 672
+GY + PD
Sbjct: 181 LGY-VFVPD 188
>gi|602401 (U07746) OmpR [Xenorhabdus nematophilus]
Length = 239
Score = 87.8 bits (214), Expect = 8e-17
Identities = 70/223 (31%), Positives = 114/223 (50%), Gaps = 9/223 (4%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+ILV++D+ + A L YL E+G V AA+ L I+LDL LPG D
Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLMLPGEDDCL 65
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG- 360
+LR++ P++M++A+ +++ G + GADDYL KPF +E+ R+ + RR
Sbjct: 66 SAEELRSQ-NNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRLVLRRQT 124
Query: 361 ---KGLQT---RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
G T V++ G E +L T E+ + L L +L+ L+ ++R
Sbjct: 125 HELPGAPTSDDTVVKFGKFETDLGTREMFHHDEQLSLTSGEFSVLKVLVSYPREPLSRDK 184
Query: 523 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 672
L + G E + S+ V + LR ++++ P IQT G+GY + PD
Sbjct: 185 LMSLARGREYGAMERSIDVQVSRLRRLIEEDPAQPRYIQTVWGLGY-VFIPD 235
>gi|1169089|sp|P44895|CPXR_HAEIN TRANSCRIPTIONAL REGULATORY PROTEIN
CPXR HOMOLOG >gi|1074524|pir||C64159 hypothetical
protein HI0837 - Haemophilus influenzae (strain Rd KW20)
>gi|1573851 (U32765) response regulator (cpxR)
[Haemophilus influenzae Rd]
Length = 227
Score = 87.8 bits (214), Expect = 8e-17
Identities = 67/221 (30%), Positives = 115/221 (51%), Gaps = 7/221 (3%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
++L+++D+ ++ L LE G V+ A +G+ L + + ++LD+ +P ++GIE
Sbjct: 3 KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQ-KLNESYKLVLLDVMMPKLNGIE 61
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+++R + PV+MLTAR +++ G + GADD L KPF +E+ R+ A+ RR
Sbjct: 62 TLKEIRKVSN--VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA 119
Query: 364 GLQTRVLETGDLEYNLDTLEVRR-----RGKLLQLNPTGLKILQALMEATPAVVTRQDLE 528
+ L ++ TL + L L KIL L+++ VV+R++L
Sbjct: 120 SPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELS 179
Query: 529 TRVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIAT 666
V + L P SL +HI LR + K + P +T G GY + T
Sbjct: 180 LEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGYALVT 227
>gi|1621045 (U50932) GltR [Pseudomonas aeruginosa]
Length = 242
Score = 87.0 bits (212), Expect = 1e-16
Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 10/219 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
IL+++D+ +I L YL G V + G E +LD+ LP DG +
Sbjct: 8 ILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDGFSL 67
Query: 187 CRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
CR +R+ R P++MLTA +++ G + GADDYL KPF+ +E+ R+ AL RR +
Sbjct: 68 CRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRRAQ 127
Query: 364 GLQTRVLETGDL----EYNLDTLEVR---RRGKLLQLNPTGLKILQALMEATPAVVTRQD 522
Q R GD+ ++ LDT+ R G+ L+ +L+ ++ ++ R
Sbjct: 128 FTQVR---GGDVLAFEDWRLDTVSHRLFHEDGEEFFLSGADFALLKLFLDHPQQILDRDT 184
Query: 523 LETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIA 663
+ G E LP + + + LR + P LIQT G GY +A
Sbjct: 185 IANATRGREVLPLERIVDMAVSRLRQRLRDTGKAPRLIQTVRGSGYLLA 233
>gi|2500753|sp|P55701|Y4XI_RHISN PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN Y4XI >gi|2182717 (AE000106) Y4xI [Rhizobium sp.
NGR234]
Length = 226
Score = 86.2 bits (210), Expect = 2e-16
Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 1/225 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R L+++ +D+ + L + G AVD ++ ++L+L LP DG+
Sbjct: 1 MRTLLVD--TDLTRAVRGALGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDGL 58
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ R+LR++ P ++++ D L+ +++ F+SGADD+L KP + E+ R+ AL RR
Sbjct: 59 DWLRQLRSDGYS-VPAVIMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRS 117
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ ++E G+L ++ +V G L + L IL+ L+ +V R LE +++
Sbjct: 118 TQITCPIIEFGNLHFDPIGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLY 177
Query: 541 G-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 675
+ ++L I+ LR + + I+T GIGY + DA
Sbjct: 178 SFNDEVSGNALEAGIYRLRGYLSRSGATLRIRTVRGIGYTLELTDA 223
>gi|1172480|sp|P45189|PHOB_HAEIN PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|1075136|pir||F64120
phosphate regulon transcriptional regulatory protein
(phoB) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574213 (U32818) phosphate regulon transcriptional
regulatory protein (phoB) [Haemophilus influenzae Rd]
Length = 231
Score = 86.2 bits (210), Expect = 2e-16
Identities = 63/221 (28%), Positives = 118/221 (52%), Gaps = 3/221 (1%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
+IL++ED I + +L ++ + V A+D T ++ + I+LD LPG GI+
Sbjct: 4 KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAIN-KIKENPKLILLDWMLPGRSGIQ 62
Query: 184 VCRKLRN-EARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+ ++ E+ P++MLTA+ + ++ + ++GADDY+ KPF+ Q + R+ A+ RR
Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
Q++ ++ +L + + V + + + L+ T K+L M V +R+ L R+W
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182
Query: 541 GEELP-DSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIAT 666
+L + ++ +I LR + PF IQT G GYR ++
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNL-APFQCEHYIQTVRGSGYRFSS 225
>gi|2613090|gb|AAB84279.1| (AF030317) OmpR [Proteus vulgaris]
Length = 193
Score = 85.8 bits (209), Expect = 3e-16
Identities = 58/177 (32%), Positives = 96/177 (53%), Gaps = 9/177 (5%)
Frame = +1
Query: 142 IVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQ 321
IVLDL LPG DG+ +CR+LR++ P++M+TA+ +++ G + GADDY+ KPF +
Sbjct: 5 IVLDLMLPGEDGLSICRRLRSQ-NNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPR 63
Query: 322 EVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQ 480
E+ R+ A+ RR ++ G + NL T E+ + + L +L+
Sbjct: 64 ELLARIRAVLRRQANELPGAPSQDNAIISFGKFKLNLGTREMFHEEEHMPLTSGEFAVLK 123
Query: 481 ALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGY 654
L+ ++R L + G E + S+ V I LR ++++ P IQT G+GY
Sbjct: 124 VLVSHLREPLSRDKLMSLARGREYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGY 183
Query: 655 RIATPD 672
+ PD
Sbjct: 184 -VFVPD 188
>gi|2613086|gb|AAB84277.1| (AF030315) OmpR [Enterobacter cloacae]
Length = 192
Score = 85.4 bits (208), Expect = 4e-16
Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Frame = +1
Query: 133 FDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPF 312
F +VLDL LPG G+ +CR+L +++ P++M+TA+ +++ G + GADDY+ KPF
Sbjct: 2 FHLMVLDLMLPGEAGVSICRRLASQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPF 60
Query: 313 ALQEVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLK 471
+E+ R+ A+ RR + V+ G + NL T E+ R + + L
Sbjct: 61 NPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTNGEFA 120
Query: 472 ILQALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHG 645
+L+AL+ ++R L G E + S+ V I LR +V++ P IQT G
Sbjct: 121 VLKALVSHPREPLSRDKLMNLARGREYSAMEASIDVQISRLRRMVEEDPAHPRYIQTVWG 180
Query: 646 IGYRIATPD 672
+GY + PD
Sbjct: 181 LGY-VFVPD 188
>gi|2632486|emb|CAB11994| (Z99105) similar to two-component response
regulator [YbdK] [Bacillus subtilis]
>gi|3599623|dbj|BAA33098| (AB006424) ybdJ [Bacillus
subtilis]
Length = 223
Score = 83.9 bits (204), Expect = 1e-15
Identities = 63/221 (28%), Positives = 117/221 (52%), Gaps = 2/221 (0%)
Frame = +1
Query: 4 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 183
RIL++ED+ I L L+ G+ V + DG L +V+ + D +++D+ LPG DG +
Sbjct: 5 RILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVL--SVIQKVDLVIMDVMLPGEDGYQ 62
Query: 184 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
+ K++ + PV+ L+AR+ +D+KL G G +DY++KPF +E+ +R+ +
Sbjct: 63 MSAKIK-KLGLGIPVIFLSARNDMDSKLQGLQIG-EDYMVKPFDPRELLLRMRNMLEHHY 120
Query: 364 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGL--KILQALMEATPAVVTRQDLETRV 537
G T++ L + T +V ++ T + KI L E +++T++ +
Sbjct: 121 GTFTQIKH---LYIDAVTKKVFNESLHDEVLFTAIERKIFFYLYENRDSILTKEHFFEYL 177
Query: 538 WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 666
W E + + + VHI +RA ++ +I+ +G GYR+ T
Sbjct: 178 WQLEDRNPNIVNVHIKKIRAKINDQAG-EMIENIYGEGYRLNT 219
>gi|1666499|emb|CAA70482| (Y09296) response regulator of
two-component regulatory system [Wolinella succinogenes]
Length = 223
Score = 82.7 bits (201), Expect = 3e-15
Identities = 63/220 (28%), Positives = 113/220 (50%), Gaps = 2/220 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGL-HLAVVHEFDAIVLDLNLPGMDG 177
++I ++EDN + + + L E G+ VD DG L HL H +LD+++P +DG
Sbjct: 1 MKIFLLEDNPKLREAIEETLSENGYRVDSFEDGQEALEHLDGSHLL--YILDIHVPRIDG 58
Query: 178 IEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 357
+E+ ++ K PV+++++ LD + G D+L KPF L E+ + + L
Sbjct: 59 LELLALIQGRFIK-APVIIISSFVDLDVIRQAYRHGCADFLKKPFFLDELLFKTHRLC-- 115
Query: 358 GKGLQTRVLETGDLEY-NLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 534
G ++ G+ + +L+ + R G+ L L+P ++L+ L+ A +V+ +++E
Sbjct: 116 --GKLHPLIPLGEETFLDLENALILREGQSLLLSPKEKRLLELLVRARGLLVSFEEIEEY 173
Query: 535 VWGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
VW E +++R I LR + IQT GIGYR+
Sbjct: 174 VWEEGEVPRENIRSMIRQLRLKI----PASSIQTHKGIGYRL 211
>gi|281708|pir||S28674 hypothetical protein 2 - Rhizobium sp.
(strain IC3342) >gi|152259 (M38698) lcrB gene product
[Rhizobium sp.]
Length = 238
Score = 81.5 bits (198), Expect = 6e-15
Identities = 62/219 (28%), Positives = 115/219 (52%), Gaps = 12/219 (5%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
+++++D+ I + L YLE+ G V A + ++ L + D ++LD+ LP +G+E+
Sbjct: 4 LIIVDDDPRIRSMLSRYLEDEGFRVRLA-ENISQLRRVLSPSVDLVLLDIGLPDGNGLEL 62
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R++ +A + P ++++ RD +++ G + GADDY+ KPF L+E+ R+ ++ RR +
Sbjct: 63 AREI--DANFRVPTIIVSGRDDDVDRIIGLEMGADDYVSKPFNLRELLARVRSVLRRSQR 120
Query: 367 LQ----TRVLETGDLEYNLDTLEVRRR------GKLLQLNPTGLKILQALMEATPAVVTR 516
+ G ++ L+ RR G+ ++L +L + V+TR
Sbjct: 121 AMPLGPAQKATAGIFHFDGWMLDADRRQLTSTAGQTIELTTGEFDLLMVFVTHPGRVLTR 180
Query: 517 QDLETRVWGEELPDSD-SLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRIA 663
L + G D ++ V + LRA V D P D I++ G GY A
Sbjct: 181 DFLLDQTRGRTREAFDRAIDVQVTRLRAKVEDDPGDPRRIKSVRGAGYVFA 231
>gi|2126074|pir||I69716 torCAD response regulator - Escherichia coli
>gi|1122858|emb|CAA63922| (X94231) TorR [Escherichia
coli]
Length = 230
Score = 80.4 bits (195), Expect = 1e-14
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
I+++ED A L Y + G+ V A G + D I+LD+NLP +G+ +
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R LR R ++++T R +++ G + GADDY+ KP L+E+ VR+ L R
Sbjct: 65 TRALRE--RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122
Query: 367 LQTRVLETGDLEY-------NLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 525
+ T D Y N+ + R G+ ++L ++L A + +++R+ L
Sbjct: 123 ARQAQPHTQDNLYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182
Query: 526 ETRVWGE--ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 663
+ E PD ++ V I LR L+ T+HG GY +A
Sbjct: 183 LRMLSARRVENPDLRTVDVLIRRLR----HKLSADLLVTQHGEGYFLA 226
>gi|2507607|sp|P38684|TORR_ECOLI TORCAD OPERON TRANSCRIPTIONAL
REGULATORY PROTEIN TORR >gi|1651487|dbj|BAA36137|
(D90736) TorCAD response regulator [Escherichia coli]
>gi|1651493|dbj|BAA35762| (D90737) TorCAD response
regulator [Escherichia coli] >gi|1787229 (AE000201)
response transcriptional regulator for torA (sensor
TorS) [Escherichia coli]
Length = 230
Score = 80.0 bits (194), Expect = 2e-14
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
I+++ED A L Y + G+ V A G + D I+LD+NLP +G+ +
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 366
R LR R ++++T R +++ G + GADDY+ KP L+E+ VR+ L R
Sbjct: 65 TRALRE--RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122
Query: 367 LQTRVLETGDLEY-------NLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 525
+ T D Y N+ + R G+ ++L ++L A + +++R+ L
Sbjct: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182
Query: 526 ETRVWGE--ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 663
+ E PD ++ V I LR L+ T+HG GY +A
Sbjct: 183 LRMLSARRVENPDLRTVDVLIRRLR----HKLSADLLVTQHGEGYFLA 226
>gi|2073506|emb|CAA72451| (Y11777) transcriptional regulatory
protein [Rickettsia prowazekii]
Length = 146
Score = 77.6 bits (188), Expect = 9e-14
Identities = 43/141 (30%), Positives = 79/141 (55%), Gaps = 1/141 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ IL+++D+S I A L +L + V A + +L +D I+LD+ LP + G+
Sbjct: 6 IHILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNYDLIILDVMLPRITGL 65
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL-SRR 357
+ +R +A P++MLTA ++++ G ++GA DY+ KPF +E+ +R+N L +
Sbjct: 66 DFATTIR-DAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNY 124
Query: 358 GKGLQTRVLETGDLEYNLDTLE 423
+T +++ G+ YN T E
Sbjct: 125 NFKKETNIIKFGNNFYNCTTKE 146
>gi|4511977|gb|AAD21537.1| (AF088896) aerobic respiration control
protein [Zymomonas mobilis]
Length = 241
Score = 76.9 bits (186), Expect = 2e-13
Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 11/221 (4%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
I+++ED++ + A + L+E G+ G D I++D+ LPG +G+++
Sbjct: 6 IMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNGLDL 65
Query: 187 CRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 363
R+LR+ ++ PV+ L+ARD +++ G + G DDY+ KPF +E+ R+ A+ RR +
Sbjct: 66 TRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLRRSQ 125
Query: 364 GL-------QTRVLETGDLEYNLDTLEVRR-RGKLLQLNPTGLKILQALMEATPAVVTRQ 519
+ Q+ ++ + D E+ G ++L+ +L + ++ V+ R+
Sbjct: 126 AVKEADGNPQSHLIHFEGWVLDPDRRELHSPTGAGVELSGAEFDLLLSFLQHAQRVIGRE 185
Query: 520 DLETRVWGEELPDSD-SLRVHIHGLRAVVDKPFDV-PLIQTRHGIGYRIATP 669
L SD S+ V + LR + + +I+T G+GY P
Sbjct: 186 RLLELSRSRLSEASDRSIDVLVSRLRRKLSSQTEAGDMIRTIRGVGYMFTVP 237
>gi|2314190|gb|AAD08088.1| (AE000612) response regulator
[Helicobacter pylori 26695]
Length = 223
Score = 76.1 bits (184), Expect = 3e-13
Identities = 49/223 (21%), Positives = 108/223 (47%), Gaps = 1/223 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+IE NS + + L +G D G +L + +D +++ + +
Sbjct: 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS----DKNAL 56
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+++ E VL+ + + + ++ F+ GADDY+ KP+ + ++ + + R
Sbjct: 57 SFVSRIK-EKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPY--RSIKALVARIEARL 113
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ + V+E GDL + D ++ +G+ +++ ++L L +V+++ L +W
Sbjct: 114 RFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW 173
Query: 541 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 669
E E+ + + V I+ +R +DKP + +++T GYR P
Sbjct: 174 EEPEMVTPNVIEVAINQIRQKMDKPLGISMVETVRRRGYRFCYP 217
>gi|4154918 (AE001473) putative TRANSCRIPTIONAL REGULATOR
[Helicobacter pylori J99]
Length = 223
Score = 74.9 bits (181), Expect = 6e-13
Identities = 49/223 (21%), Positives = 107/223 (47%), Gaps = 1/223 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R+L+IE NS + + L +G D G +L + +D +++ + +
Sbjct: 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS----DKNAL 56
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
+++ E VL+ + + + ++ F+ GADDY+ KP+ + ++ + + R
Sbjct: 57 SFVSRIK-EKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPY--RSIKALVARIEARL 113
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
+ + V+E GDL + D ++ +G+ +++ ++L L +V+++ L +W
Sbjct: 114 RFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW 173
Query: 541 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 669
E E+ + + V I+ +R +DKP + ++T GYR P
Sbjct: 174 EEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYP 217
>gi|5830532|emb|CAB54574.1| (AJ006395) response regulator
[Streptococcus pneumoniae]
Length = 217
Score = 71.8 bits (173), Expect = 5e-12
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 2/221 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ ILV +D I + +L E G+ V A DG L +VLDL +P G
Sbjct: 1 MNILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKFQDLPIHLMVLDLMMPRKSGF 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 360
EV +++ + PV++L+A + FD ADD++ KPF+L + R+ AL RR
Sbjct: 61 EVLKEINQ--KHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSLVLLVKRIKALIRRY 118
Query: 361 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 540
++ + D+ + + + + + + L P L +L+ L++ V++R+ + +
Sbjct: 119 YVIED-LWRYQDVTVDFTSYKAHYKNEEIDLKPKELLVLKCLIQHKNQVLSREQILEEIS 177
Query: 541 GE--ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 663
+ +LP + V+I LR K + I T +GY+I+
Sbjct: 178 KDVADLPCDRVVDVYIRTLR----KKLALDCIVTVKNVGYKIS 216
>gi|2853598 (AF031898) CheY [Pseudomonas putida]
Length = 124
Score = 71.8 bits (173), Expect = 5e-12
Identities = 40/122 (32%), Positives = 69/122 (55%), Gaps = 2/122 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHA-VDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++IL+++D S + + + L + G + A DG T L + +D +V D N+PGM G
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTEEADDGTTALPMLENGHYDFLVTDWNMPGMSG 60
Query: 178 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 354
I++ RK+R +E K PVLM+TA D + +G + Y++KPF Q ++ ++ +
Sbjct: 61 IDLLRKVRASEKLKTMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFE 120
Query: 355 RGKG 366
R G
Sbjct: 121 RVNG 124
>gi|2914154|pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
>gi|2914155|pdb|1AB5|B Chain B, Structure Of Chey Mutant
F14n, V21t
Length = 125
Score = 70.6 bits (170), Expect = 1e-11
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++DNS + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 61
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 62 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
>gi|2914156|pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
>gi|2914157|pdb|1AB6|B Chain B, Structure Of Chey Mutant
F14n, V86t
Length = 125
Score = 70.6 bits (170), Expect = 1e-11
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++DNS + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 61
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM TA +N + +GA Y++KPF +E +LN +
Sbjct: 62 LELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
>gi|230455|pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys)
(S56C)
Length = 128
Score = 70.2 bits (169), Expect = 2e-11
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ F I+ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMDG 64
Query: 178 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|515285|pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF|
Chey
Length = 128
Score = 69.9 bits (168), Expect = 2e-11
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ F I+ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDG 64
Query: 178 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|116292|sp|P06657|CHEY_SALTY CHEMOTAXIS PROTEIN CHEY
>gi|72607|pir||QREBCY chemotaxis protein cheY -
Salmonella typhimurium >gi|153909 (M12131) CheY protein
[Salmonella typhimurium]
Length = 129
Score = 69.9 bits (168), Expect = 2e-11
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ F I+ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDG 65
Query: 178 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|2500739|sp|Q51455|CHEY_PSEAE CHEMOTAXIS PROTEIN CHEY
>gi|94801|pir||S20545 phosphate acceptor regulatory
protein - Pseudomonas aeruginosa >gi|45323|emb|CAA43549|
(X61231) CheY [Pseudomonas aeruginosa]
Length = 124
Score = 69.5 bits (167), Expect = 3e-11
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAAD-GVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++IL+++D S + + + L + G AD G T L + FD +V D N+PGM G
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTG 60
Query: 178 IEVCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 354
I++ R +R + R K PVLM+TA D + +G + Y++KPF Q ++ ++ +
Sbjct: 61 IDLLRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFE 120
Query: 355 RGKG 366
R G
Sbjct: 121 RVNG 124
>gi|1688294 (U78087) CheY [Burkholderia pseudomallei]
Length = 131
Score = 69.1 bits (166), Expect = 3e-11
Identities = 37/116 (31%), Positives = 69/116 (58%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHA-VDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ILV++D + + + L+E G++ VD A DG+ GL +D ++ D N+P +DG
Sbjct: 5 MKILVVDDFPTMRRIVRNLLKELGYSNVDEAEDGLAGLARLRGGGYDFVISDWNMPNLDG 64
Query: 178 IEVCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+ + +++R +A PVLM+TA +N + +GA Y++KPF ++ +LN +
Sbjct: 65 LAMLKEIRADASLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPFTAATLDEKLNKI 122
>gi|230822|pdb|3CHY| CheY >gi|576050|pdb|1CHN| Chey Complexed With
Mg2+ In The Active Site >gi|3402111|pdb|1EAY|A Chain A,
Chey-Binding (P2) Domain Of Chea In Complex With Chey
From Escherichia Coli >gi|3402112|pdb|1EAY|B Chain B,
Chey-Binding (P2) Domain Of Chea In Complex With Chey
From Escherichia Coli >gi|4139461|pdb|1A0O|A Chain A,
Chey-Binding Domain Of Chea In Complex With Chey
>gi|4139463|pdb|1A0O|C Chain C, Chey-Binding Domain Of
Chea In Complex With Chey >gi|4139465|pdb|1A0O|E Chain
E, Chey-Binding Domain Of Chea In Complex With Chey
>gi|4139467|pdb|1A0O|G Chain G, Chey-Binding Domain Of
Chea In Complex With Chey >gi|5107492|pdb|1BDJ|A Chain
A, Complex Structure Of Hpt Domain And Chey
Length = 128
Score = 67.9 bits (163), Expect = 8e-11
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|1421458|pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46
Structures)
Length = 128
Score = 67.9 bits (163), Expect = 8e-11
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|116291|sp|P06143|CHEY_ECOLI CHEMOTAXIS PROTEIN CHEY
>gi|72606|pir||QRECCY chemotaxis protein cheY -
Escherichia coli >gi|145534 (K02175) CheY protein (cheY)
[Escherichia coli] >gi|1736535|dbj|BAA15698| (D90830)
Chemotaxis protein CheY [Escherichia coli] >gi|1788191
(AE000282) chemotaxis regulator transmits chemoreceptor
signals to flagelllar motor components [Escherichia
coli]
Length = 129
Score = 67.9 bits (163), Expect = 8e-11
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|999670|pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1
Inserted, And Ala 2 Replaced By Ser
(Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 67.9 bits (163), Expect = 8e-11
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|6435696|pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A
Hyperactive Chey Mutant
Length = 128
Score = 67.5 bits (162), Expect = 1e-10
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTPATLEEKLNKI 122
>gi|145525 (M13463) cheY peptide [Escherichia coli]
Length = 129
Score = 67.1 bits (161), Expect = 1e-10
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 123
>gi|2073556 (U62023) sensor/regulator protein RpfA [Erwinia carotovora
subsp. carotovora]
Length = 929
Score = 66.7 bits (160), Expect = 2e-10
Identities = 56/196 (28%), Positives = 100/196 (50%), Gaps = 9/196 (4%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+R++ ++DN +G LEE+ + G + A +++ D I++D+ +PGMDGI
Sbjct: 675 LRVMAVDDNPANLKLIGTLLEEQVETIILCESGQDAIAQAELNQCDIILMDIQMPGMDGI 734
Query: 181 ---EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALS 351
E+ R++ + A TP++ +TA+ + SG DDYL KP Q ++ L +
Sbjct: 735 CASELIRQIPHHA--TTPIIAVTAQTMTGEREHLLRSGMDDYLAKPIDEQMLKSVLTRHA 792
Query: 352 R-----RGKGLQTRVL-ETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 513
R R +G T +L E D + +LD +++ G +LQ L++ P V
Sbjct: 793 RQDPLKRNRGEMTGLLNEHDDSQLSLDWALAQQQA--ANKPELGRDLLQMLLDFLPEV-- 848
Query: 514 RQDLETRVWGEELPDSDSLRVHIHG 588
++ +E + G+ D L +HG
Sbjct: 849 QRKIENVLKGQTDDDIIELVHKLHG 873
>gi|1942868|pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 66.0 bits (158), Expect = 3e-10
Identities = 37/116 (31%), Positives = 67/116 (56%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA +++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
>gi|1421405|pdb|1YMU|A Chain A, Signal Transduction Protein Chey
Mutant With Met 17 Replaced By Gly (M17g)
>gi|1421406|pdb|1YMU|B Chain B, Signal Transduction
Protein Chey Mutant With Met 17 Replaced By Gly (M17g)
Length = 130
Score = 66.0 bits (158), Expect = 3e-10
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 66
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 67 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
>gi|1065051|pdb|1VLZ|A Escherichia coli >gi|1065052|pdb|1VLZ|B
Escherichia coli
Length = 128
Score = 65.6 bits (157), Expect = 4e-10
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+ A +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|1421407|pdb|1YMV| Signal Transduction Protein Chey Mutant With
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, And Met
17 Replaced By Gly
Length = 129
Score = 65.6 bits (157), Expect = 4e-10
Identities = 37/116 (31%), Positives = 65/116 (55%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|1172506|sp|P46384|PILG_PSEAE PILG PROTEIN >gi|538678|pir||A48491
twitching motility protein PilG - Pseudomonas aeruginosa
>gi|309883 (L10831) CheY homologue [Pseudomonas
aeruginosa]
Length = 135
Score = 65.6 bits (157), Expect = 4e-10
Identities = 37/109 (33%), Positives = 62/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
++++VI+D+ I L++ G V A DG L + I +D+ +P +DG
Sbjct: 8 LKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGY 67
Query: 181 EVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEV 327
+ C ++N A K TPV+ML+++D L +K G G+D YL KPF+ +E+
Sbjct: 68 QTCALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEEL 117
>gi|2983588 (AE000724) transcriptional regulator (NtrC family)
[Aquifex aeolicus]
Length = 439
Score = 65.6 bits (157), Expect = 4e-10
Identities = 35/114 (30%), Positives = 63/114 (54%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 180
+ +LVIED+ L +YL +G V+ A G L F+ ++LDL LP ++G+
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGL 60
Query: 181 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLN 342
E+ + ++ E +T V+++T ++ + GA D+L KP L+E+E+ +N
Sbjct: 61 EILKWIK-ERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTIN 113
>gi|2781290|pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By
Asp, Lys 92 Replaced By Ala, Ile 96 Replaced By Lys And
Ala 98 Replaced By Leu (Stabilizing Mutations In Helix
4) >gi|2781291|pdb|1UDR|B Chain B, Chey Mutant With Lys
91 Replaced By Asp, Lys 92 Replaced By Ala, Ile 96
Replaced By Lys And Ala 98 Replaced By Leu (Stabilizing
Mutations In Helix 4) >gi|2781292|pdb|1UDR|C Chain C,
Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
>gi|2781293|pdb|1UDR|D Chain D, Chey Mutant With Lys 91
Replaced By Asp, Lys 92 Replaced By Ala, Ile 96 Replaced
By Lys And Ala 98 Replaced By Leu (Stabilizing Mutations
In Helix 4)
Length = 129
Score = 65.2 bits (156), Expect = 5e-10
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 VRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 177
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 178 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 348
+E+ + +R + A PVLM+TA +N +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|1710787|sp|P52108|RSTA_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
RSTA >gi|1079807 (U41101) RstA [Escherichia coli]
>gi|1742647|dbj|BAA15346| (D90803) Transcriptional
regulatory protein RstA. [Escherichia coli]
>gi|1742658|dbj|BAA15356| (D90804) Transcriptional
regulatory protein RstA. [Escherichia coli] >gi|1787893
(AE000256) response transcriptional regulatory protein
(RstB sensor) [Escherichia coli]
Length = 242
Score = 63.2 bits (151), Expect = 2e-09
Identities = 57/221 (25%), Positives = 103/221 (45%), Gaps = 7/221 (3%)
Frame = +1
Query: 7 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 186
I+ +ED++++ + + YL + V G + D ++LD+ LPG DG+ +
Sbjct: 7 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 66
Query: 187 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKP------FALQEVEVRLNAL 348
CR LR A+ P+++LT+ DS N + + GA DY++K A + +R N
Sbjct: 67 CRDLR--AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 124
Query: 349 SRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 528
+ KGLQ L T + TL + +++ L T + + A E + T
Sbjct: 125 ATLTKGLQETSL-TPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH---- 179
Query: 529 TRVWGEELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATP 669
++ D D+L ++ G+ +D+ DV + + R + A P
Sbjct: 180 ----AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEP 223
>gi|585207|sp|Q05943|GLNR_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN
GLNR >gi|478299|pir||JN0831 GlnR protein - Streptomyces
coelicolor >gi|153283 (L03213) glnR [Streptomyces
coelicolor]
Length = 267
Score = 54.7 bits (129), Expect = 8e-07
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Frame = +1
Query: 277 DSGADDYLIKPFALQEVEVRLNALSRR---GKGLQTRVLETGDLEYNLDTLEVRRRGKLL 447
D G DD L+ EVE RL + R G + GDL + T + +G++L
Sbjct: 89 DWGIDDVLLDTAGPAEVEARLRLATGRQQLGGDDSPMEIRNGDLSVDEATYSAKLKGRVL 148
Query: 448 QLNPTGLKILQALMEATPAVVTRQDLETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFDVP 624
L ++L+ L + V TR L VWG + + ++ VH+ LRA + P
Sbjct: 149 DLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLG-PEHES 207
Query: 625 LIQTRHGIGYRIATPD 672
LI T +GYR TP+
Sbjct: 208 LIGTVRNVGYRFVTPE 223
>gi|2916876|emb|CAA17624.1| (AL022004) hypothetical protein Rv0818
[Mycobacterium tuberculosis]
Length = 255
Score = 53.5 bits (126), Expect = 2e-06
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Frame = +1
Query: 136 DAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFA 315
DA+++D G +CR L + R PVL + + L D G D+ L+
Sbjct: 44 DAVLVDARNDLSSGRGLCRLLSSTGRS-IPVLAVVSEGGL--VAVSADWGLDEILLLSTG 100
Query: 316 LQEVEVRLN-ALSRRGKGLQTRVL---ETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQA 483
E++ RL + RRG L G+L + T R RG+ L L ++L+
Sbjct: 101 PAEIDARLRLVVGRRGDLADQESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKY 160
Query: 484 LMEATPAVVTRQDLETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 660
L + V TR L VWG + + ++ VH+ LRA + P LI T +GY+
Sbjct: 161 LAQHAGRVFTRAQLLHEVWGYDFFGGTRTVDVHVRRLRAKLG-PEHEALIGTVRNVGYKA 219
Query: 661 ATP 669
P
Sbjct: 220 VRP 222
>gi|1170464|sp|P43016|IAGA_SALTI INVASION PROTEIN IAGA
>gi|791140|emb|CAA56853| (X80892) iagA [Salmonella
typhi]
Length = 553
Score = 45.3 bits (105), Expect = 5e-04
Identities = 28/92 (30%), Positives = 47/92 (50%)
Frame = +1
Query: 394 DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLR 573
D N+D VR K+ + P +L L+EA +V++ L +VWG+ + +SL
Sbjct: 18 DFILNMDGSLVRSEKKV-NIPPKEYAVLVILLEAAGKIVSKNTLLDQVWGDAEVNEESLT 76
Query: 574 VHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 669
I+ LR ++ + + I+T +G GYR P
Sbjct: 77 RCIYALRRILSEDKEHRYIETLYGQGYRFNRP 108
>gi|1170465|sp|P43015|IAGA_SALTY INVASION PROTEIN IAGA (PROTEIN
HILA) >gi|2126153|pir||S70817 hilA protein - Salmonella
typhimurium >gi|806901 (U25352) HilA [Salmonella
typhimurium]
Length = 553
Score = 45.3 bits (105), Expect = 5e-04
Identities = 28/92 (30%), Positives = 47/92 (50%)
Frame = +1
Query: 394 DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLR 573
D N+D VR K+ + P +L L+EA +V++ L +VWG+ + +SL
Sbjct: 18 DFILNMDGSLVRSEKKV-NIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLT 76
Query: 574 VHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 669
I+ LR ++ + + I+T +G GYR P
Sbjct: 77 RCIYALRRILSEDKEHRYIETLYGQGYRFNRP 108
>gi|2145544|pir||S70816 hilA protein - Salmonella typhimurium
(fragment)
Length = 87
Score = 44.1 bits (102), Expect = 0.001
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +1
Query: 430 RRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLRVHIHGLRAVVDK 609
R K + + P +L L+EA +V++ L +VWG+ + +SL I+ LR ++ +
Sbjct: 6 RSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSE 65
Query: 610 PFDVPLIQTRHGIGYRIATP 669
+ I+T +G GYR P
Sbjct: 66 DKEHRYIETLYGQGYRFNRP 85
>gi|6318173|emb|CAB60259.1| (AJ250862) MrsR1 protein [Bacillus sp.
HIL-Y85/54728]
Length = 213
Score = 31.7 bits (70), Expect = 6.2
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 1/78 (1%)
Frame = +1
Query: 430 RRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLRVHIHGLRAVV-D 606
++ + + L KIL L + +V ++L + +L SL VHI LR V D
Sbjct: 121 KKNEYIPLAIQEFKILYLLYLNSNKIVCSEEL---IEYADLTGRSSLYVHISSLREKVED 177
Query: 607 KPFDVPLIQTRHGIGYRIA 663
P D ++QT+ G GY ++
Sbjct: 178 NPGDPKILQTKFGKGYLLS 196
>gi|117936|sp|P14922|SSN6_YEAST GLUCOSE REPRESSION MEDIATOR PROTEIN
>gi|171350 (M23440) CYC8 protein [Saccharomyces
cerevisiae] >gi|172726 (M17826) SSN6 protein
[Saccharomyces cerevisiae]
Length = 966
Score = 31.3 bits (69), Expect = 8.2
Identities = 35/143 (24%), Positives = 60/143 (41%)
Frame = -2
Query: 437 PRRRTSSVSRLYSRSPVSNTRVCRPLPRRDSAFKRTSTSCKANGLIK*SSAPESKPVSLL 258
PR+ T ++ +++P + P ++ K S + N L+ +++ E S +
Sbjct: 711 PRQPTHAIP---TQAPATGITNAEPQVKKQ---KLNSPNSNINKLVNTATSIEENAKSEV 764
Query: 257 SSESRAVNISTGVCLRASLRNLRQTSMPSMPGRFRSSTMASNSWTTAKCNPVTPSAAKST 78
S++S AV S + ++ S+PS+ G AS + K V+PS
Sbjct: 765 SNQSPAVVESNTNNTSQEEKPVKANSIPSVIGAQEPPQEASPAEEATKAASVSPSTKPLN 824
Query: 77 AWPRSSR*SPRLAAISLLSSMTK 9
P SS P +S SS TK
Sbjct: 825 TEPESSSVQP---TVSSESSTTK 844
>gi|6319589|ref|NP_009670.1|CYC8| Transcription regulatory protein;
Cyc8p >gi|283218|pir||S25365 SSN6 protein - yeast
(Saccharomyces cerevisiae) >gi|3550|emb|CAA46973|
(X66247) nuclear phosphoprotein [Saccharomyces
cerevisiae] >gi|476068|emb|CAA55615| (X78993) glucose
repression mediator protein [Saccharomyces cerevisiae]
>gi|536450|emb|CAA85069| (Z35981) ORF YBR112c
[Saccharomyces cerevisiae]
Length = 966
Score = 31.3 bits (69), Expect = 8.2
Identities = 35/143 (24%), Positives = 60/143 (41%)
Frame = -2
Query: 437 PRRRTSSVSRLYSRSPVSNTRVCRPLPRRDSAFKRTSTSCKANGLIK*SSAPESKPVSLL 258
PR+ T ++ +++P + P ++ K S + N L+ +++ E S +
Sbjct: 711 PRQPTHAIP---TQAPATGITNAEPQVKKQ---KLNSPNSNINKLVNTATSIEENAKSEV 764
Query: 257 SSESRAVNISTGVCLRASLRNLRQTSMPSMPGRFRSSTMASNSWTTAKCNPVTPSAAKST 78
S++S AV S + ++ S+PS+ G AS + K V+PS
Sbjct: 765 SNQSPAVVESNTNNTSQEEKPVKANSIPSVIGAQEPPQEASPAEEATKAASVSPSTKPLN 824
Query: 77 AWPRSSR*SPRLAAISLLSSMTK 9
P SS P +S SS TK
Sbjct: 825 TEPESSSVQP---TVSSESSTTK 844
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187280675
Number of Sequences: 443958
Number of extensions: 4095336
Number of successful extensions: 15825
Number of sequences better than 10.0: 1030
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 14573
Number of HSP's gapped (non-prelim): 868
length of query: 226
length of database: 136,619,797
effective HSP length: 54
effective length of query: 171
effective length of database: 112,646,065
effective search space: 19262477115
effective search space used: 19262477115
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)