BLASTX 2.0.10 [Aug-26-1999]
Query= XF-05E12-GL25
(1122 letters)
Database: nr
455,460 sequences; 140,124,617 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1729784|emb|CAA70932| (Y09798) colS [Pseudomonas fluorescens] 165 5e-40
gi|987096|emb|CAA60456| (X86780) sensory protein kinase [Strept... 117 1e-25
gi|2182835 (U81166) histidine kinase LlkinA [Lactococcus lactis... 104 1e-21
gi|6458453|gb|AAF10322.1|AE001930_3 (AE001930) sensor histidine... 102 5e-21
gi|1706204|sp|Q03757|CUTS_STRCO CUTS PROTEIN >gi|1279725|emb|CA... 102 7e-21
gi|6460140|gb|AAF11875.1|AE002064_6 (AE002064) sensor histidine... 101 1e-20
gi|399098|sp|P30844|BASS_ECOLI SENSOR PROTEIN BASS/PMRB >gi|478... 99 6e-20
gi|4980904|gb|AAD35485.1|AE001719_11 (AE001719) sensor histidin... 99 6e-20
gi|6460835|gb|AAF12539.1|AE001826_8 (AE001826) sensor histidine... 98 1e-19
gi|4539211|emb|CAB39869.1| (AL049497) putative two component se... 98 2e-19
gi|1176111|sp|P45336|YGIY_HAEIN PROBABLE SENSOR PROTEIN HI1707 ... 97 2e-19
gi|548536|sp|P36557|BASS_SALTY SENSOR PROTEIN BASS/PMRB >gi|538... 97 2e-19
gi|6459371|gb|AAF11166.1|AE002004_5 (AE002004) sensor histidine... 97 2e-19
gi|1550636|emb|CAB02401| (Z80226) phoR [Mycobacterium tuberculo... 96 4e-19
gi|2961075 (AF029846) TctE [Salmonella typhi] 96 7e-19
gi|117436|sp|P08401|CREC_ECOLI SENSOR PROTEIN CREC >gi|72571|pi... 95 9e-19
gi|1361232|pir||S56623 pho regulon positive regulatory protein ... 95 9e-19
gi|3511130 (AF060858) histidine kinase [Salmonella dublin] 95 1e-18
gi|4726008|emb|CAB41737.1| (AL049731) putative two component se... 94 3e-18
gi|1723889|sp|P40719|YGIY_ECOLI PROBABLE SENSOR PROTEIN YGIY >g... 90 3e-17
gi|1834376|emb|CAA70860| (Y09666) RagB [Bradyrhizobium japonicum] 90 4e-17
gi|4467966|emb|CAB37946| (AJ133131) putative histidine kinase (... 89 5e-17
gi|1705848|sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG >gi|625685|... 88 1e-16
gi|6117973|gb|AAF03933.1|AF139908_3 (AF139908) LisK [Listeria m... 87 3e-16
gi|6166489|gb|AAF04854.1|AF197912_1 (AF197912) histidine protei... 86 5e-16
gi|2500762|sp|Q44007|CZCS_ALCEU SENSOR PROTEIN CZCS >gi|1403128... 86 6e-16
gi|2564745 (AF027298) histidine kinase sensory protein ExoS [Si... 84 2e-15
gi|1001334|dbj|BAA10821| (D64006) sensory transduction histidin... 84 2e-15
gi|2440113|emb|CAB16700| (Z99494) two-component sensor [Mycobac... 83 3e-15
gi|2632046|emb|CAA05605| (AJ002571) YkoH [Bacillus subtilis] >g... 83 3e-15
gi|1575578 (U67196) histidine protein kinase [Thermotoga mariti... 83 3e-15
gi|2507376|sp|P30847|BAES_ECOLI SENSOR PROTEIN BAES >gi|1736787... 83 4e-15
gi|728989|sp|P40330|BVGS_BORPA VIRULENCE SENSOR PROTEIN BVGS PR... 83 5e-15
gi|728990|sp|P16575|BVGS_BORPE VIRULENCE SENSOR PROTEIN BVGS PR... 82 7e-15
gi|115160|sp|P26762|BVGS_BORBR VIRULENCE SENSOR PROTEIN BVGS PR... 82 1e-14
gi|543778|sp|Q04943|AFQ2_STRCO SENSOR PROTEIN AFSQ2 >gi|322269|... 82 1e-14
gi|4336932|gb|AAD18016.1| (AF114442) histidine kinase; HepK [No... 80 3e-14
gi|2623815 (AF030352) two component sensor [Pseudomonas aerugin... 80 3e-14
gi|4455704|emb|CAB36689.1| (AL035500) putative two-component sy... 80 3e-14
gi|130130|sp|P23545|PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS S... 80 3e-14
gi|6045172|dbj|BAA85310.1| (AB033420) ORFS [Pseudomonas syringae] 80 4e-14
gi|478426|pir||JX0282 sensory kinase BaeS protein - Escherichia... 80 4e-14
gi|1731396|sp|Q10560|Y902_MYCTU PROBABLE SENSOR-LIKE HISTIDINE ... 79 6e-14
gi|3599372 (AF082668) CsrS [Streptococcus pyogenes] 79 6e-14
gi|6460878|gb|AAF12582.1|AE001826_51 (AE001826) sensor histidin... 79 6e-14
gi|2916943|emb|CAA17581| (AL021999) hypothetical protein Rv0982... 79 6e-14
gi|281611|pir||B41863 two-component regulatory protein lemA - P... 79 8e-14
gi|3913941|sp|O31396|IRLS_BURPS SENSOR PROTEIN IRLS >gi|2245589... 79 8e-14
gi|5764627|gb|AAD51347.1|AF173226_4 (AF173226) SmeS [Stenotroph... 79 8e-14
gi|1346440|sp|P48027|GACS_PSESY SENSOR PROTEIN GACS >gi|151329 ... 79 8e-14
gi|2439990 (U95300) two component sensor regulator; ORF2 [Pseud... 79 8e-14
gi|808104 (U25692) regulator of multiple functions [Pseudomonas... 78 1e-13
gi|1546076 (U68034) HepK [Anabaena sp.] 78 1e-13
gi|6127221|gb|AAF04315.1| (AF150928) putative histidine kinase ... 78 1e-13
gi|6002655|gb|AAF00082.1|AF095713_2 (AF095713) transmembrane hi... 78 1e-13
gi|6273355|gb|AAF06332.1|AF192795_1 (AF192795) two component hi... 78 1e-13
gi|1001827|dbj|BAA10708| (D64005) sensory transduction histidin... 78 2e-13
gi|4981813|gb|AAD36332.1|AE001781_3 (AE001781) sensor histidine... 78 2e-13
gi|2687344|emb|CAA15885| (AL020958) two-component system sensor... 78 2e-13
gi|3953516|dbj|BAA34717| (AB002529) sensor kinase rtpA [Pseudom... 78 2e-13
gi|463195 (L30101) pectate lyase [Pseudomonas viridiflava] 78 2e-13
gi|4433394|gb|AAD20724| (AF051157) sensor outer membrane protei... 78 2e-13
gi|5139602|emb|CAB45620.1| (AL079356) putative sensor-like hist... 77 2e-13
gi|1498305 (U51927) SpiR [Salmonella typhimurium] 77 2e-13
gi|939724 (U30858) putative sensor kinase; regulatory protein f... 77 2e-13
gi|2599570 (AF029704) hybrid histidine kinase [Dictyostelium di... 77 2e-13
gi|3687664|gb|AAC62214.1| (AF049873) sensor protein [Lactococcu... 77 3e-13
gi|6448582|emb|CAB61240.1| (AJ250891) virulence protein S [Kleb... 77 3e-13
gi|729184|sp|Q02541|COPS_PSESM SENSOR PROTEIN COPS >gi|420852|p... 76 4e-13
gi|114830|sp|P26607|BARA_ECOLI SENSOR PROTEIN BARA >gi|78846|pi... 76 7e-13
gi|1805580|dbj|BAA16571| (D90894) sensor-regulator protein barA... 76 7e-13
gi|1073340|pir||S52258 copper sensor protein pcoS - Escherichia... 76 7e-13
gi|130131|sp|P08400|PHOR_ECOLI PHOSPHATE REGULON SENSOR PROTEIN... 76 7e-13
gi|6435833|gb|AAF08344.2|AF083422_1 (AF083422) tyrosine kinase ... 76 7e-13
gi|2500767|sp|P76339|YEDV_ECOLI PROBABLE SENSOR PROTEIN YEDV >g... 75 9e-13
gi|2960188|emb|CAA18086.1| (AL022121) hypothetical protein Rv37... 75 9e-13
gi|4530446|gb|AAD22037.1| (AF118229) histidine kinase PnpS [Str... 75 1e-12
gi|585701|sp|P37894|PLEC_CAUCR NON-MOTILE AND PHAGE-RESISTANCE ... 75 1e-12
gi|5830530|emb|CAB54573.1| (AJ006394) histidine kinase [Strepto... 75 1e-12
gi|2182990 (U81485) histidine kinase [Lactococcus lactis cremoris] 75 1e-12
gi|2635799|emb|CAB15292| (Z99120) similar to two-component sens... 75 1e-12
gi|3641254|gb|AAC99645.1| (AF054806) putative ethylene receptor... 74 2e-12
gi|2182996 (U81488) histidine kinase [Lactococcus lactis cremoris] 74 2e-12
gi|4206625 (AF067954) putative membrane kinase sensor SilS [Sal... 74 3e-12
gi|2623997|emb|CAB07976| (Z93941) YirC [Bacillus subtilis] 73 3e-12
gi|1653170|dbj|BAA18086| (D90911) sensory transduction histidin... 73 3e-12
gi|2982998 (AE000683) histidine kinase sensor protein [Aquifex ... 73 4e-12
gi|1001594|dbj|BAA10222| (D64000) sensory transduction histidin... 73 4e-12
gi|6136814|dbj|BAA85817.1| (AB026498) ethylene receptor CS-ETR1... 73 4e-12
gi|2745902 (AF039746) ERS-like ethylene receptor [Pisum sativum] 73 4e-12
gi|1652639|dbj|BAA17559| (D90907) sensory transduction histidin... 73 4e-12
gi|1172486|sp|P45609|PHOR_SHIDY PHOSPHATE REGULON SENSOR PROTEI... 73 6e-12
gi|1754642|dbj|BAA14000| (D89625) adenylate cyclase [Anabaena sp.] 73 6e-12
gi|4138853 (AF098272) ethylene response sensor [Vigna radiata] 73 6e-12
gi|2981052 (AF051692) histidine protein kinase [Pseudomonas aer... 72 8e-12
gi|2507377|sp|P30855|EVGS_ECOLI PUTATIVE SENSOR PROTEIN EVGS PR... 72 1e-11
gi|6573134|gb|AAF17563.1| (AF201840) sensor protein EvgS1 [Esch... 72 1e-11
gi|1731205|sp|Q11155|SEX3_MYCTU SENSOR-LIKE HISTIDINE KINASE SE... 72 1e-11
gi|2190434|emb|CAA73954| (Y13627) SenX3 [Mycobacterium bovis BCG] 72 1e-11
gi|2765035|emb|CAA71030| (Y09899) sensory histidine protein kin... 72 1e-11
gi|6573136|gb|AAF17564.1|AF201841_1 (AF201841) sensor protein E... 71 1e-11
gi|6318167|emb|CAB60253.1| (AJ250862) MrsK2 protein [Bacillus s... 71 1e-11
gi|6826916|gb|AAA87563.3| (U33326) histidine protein kinase sen... 71 1e-11
gi|2126373|pir||I40646 sensor-like protein - Coxiella burnetii ... 71 2e-11
gi|421019|pir||JU0221 EvgS protein - Escherichia coli >gi|21655... 71 2e-11
gi|3123666|emb|CAA06723.1| (AJ005829) ethylene receptor [Pisum ... 71 2e-11
gi|466195|sp|P35164|RESE_BACSU SENSOR PROTEIN RESE >gi|629125|p... 71 2e-11
gi|1805446|dbj|BAA09008| (D50453) homologue of alkaline phospha... 70 3e-11
gi|2822308|gb|AAC82814.1| (AF016485) ORF H0337 [Halobacterium s... 70 3e-11
gi|2947211 (AF012539) sensory protein BvrS [Brucella abortus] 70 4e-11
gi|2072712|emb|CAB08346| (Z95121) mtrB [Mycobacterium tuberculo... 70 4e-11
gi|3367759|emb|CAA20084| (AL031155) putative two-component sens... 70 4e-11
gi|1652120|dbj|BAA17045| (D90902) sensory transduction histidin... 69 5e-11
gi|1651879|dbj|BAA16806| (D90900) sensory transduction histidin... 69 7e-11
gi|2635818|emb|CAB15311| (Z99120) similar to two-component sens... 69 7e-11
gi|6808397|emb|CAB70634.1| (AL137242) probable two-component se... 69 7e-11
gi|4768855|gb|AAD29649.1|AF124757_9 (AF124757) phosphate regulo... 69 7e-11
gi|461403 (L29642) sensor kinase [Pseudomonas fluorescens] 69 9e-11
gi|2951933 (AF024619) hybrid histidine kinase homolog [Pseudomo... 68 1e-10
gi|3395538|emb|CAA20157| (AL031182) putative two-component sens... 68 1e-10
gi|1237202|emb|CAA65612| (X96869) histidine kinase [Dictyosteli... 68 1e-10
gi|3123890 (AF031552) sensor kinase [Vibrio cholerae] 68 1e-10
gi|1046225 (U21952) ethylene response sensor [Arabidopsis thali... 68 1e-10
gi|3282775|gb|AAC25064.1| (AF043352) histidine protein kinase P... 68 1e-10
gi|602402 (U07746) EnvZ [Xenorhabdus nematophilus] 68 2e-10
gi|2073556 (U62023) sensor/regulator protein RpfA [Erwinia caro... 68 2e-10
gi|3860792|emb|CAA14692| (AJ235271) HISTIDINE KINASE SENSOR PRO... 68 2e-10
gi|5103041|dbj|BAA78774.1| (AB028738) Sensor histidine kinase p... 68 2e-10
gi|4062194|dbj|BAA35204| (D90699) Sensor protein copS (EC 2.7.... 67 3e-10
gi|1001516|dbj|BAA10143| (D64000) sensory transduction histidin... 67 3e-10
gi|2500766|sp|P77485|YBCZ_ECOLI PROBABLE SENSOR PROTEIN YBCZ >g... 67 3e-10
gi|6687470|emb|CAB64973.1| (AJ012050) VicK protein [Enterococcu... 67 3e-10
gi|556614 (U14909) MtrB [Mycobacterium tuberculosis] 67 3e-10
gi|2500763|sp|Q04804|PFES_PSEAE SENSOR PROTEIN PFES >gi|479632|... 67 3e-10
gi|2598024|emb|CAA03998| (AJ000330) Styrene sensor kinase [Pseu... 67 3e-10
gi|6460879|gb|AAF12583.1|AE001826_52 (AE001826) sensor histidin... 67 3e-10
gi|3288065|emb|CAB09800| (Z97065) RisS protein [Bordetella bron... 66 4e-10
gi|3288072|emb|CAA12133| (AJ224802) RisS protein [Bordetella av... 66 4e-10
gi|1869996|emb|CAB06847| (Z92539) hypothetical protein Rv1032c ... 66 4e-10
gi|2621510 (AE000828) sensory transduction histidine kinase [Me... 66 4e-10
gi|3913256|sp|Q54955|CIAH_STRPN SENSOR PROTEIN CIAH >gi|1363426... 66 4e-10
gi|2218094 (U93704) sensor protein RssA [Riftia pachyptila endo... 66 6e-10
gi|6136816|dbj|BAA85818.1| (AB026499) ethylene receptor CS-ERS ... 66 6e-10
gi|2707334|gb|AAC99477.1| (AF037368) putative ethylene receptor... 66 6e-10
gi|4545094|gb|AAD22391.1|AF064527_1 (AF064527) PPH [Rhodocista ... 66 6e-10
gi|4210924|gb|AAD12777.1| (AF051938) ethylene receptor homolog ... 66 6e-10
gi|1653282|dbj|BAA18197| (D90912) sensory transduction histidin... 66 6e-10
gi|1731204|sp|P54883|YV16_MYCLE PROBABLE SENSOR-LIKE HISTIDINE ... 66 6e-10
gi|2575807|dbj|BAA22997| (D49692) adenylate cyclase [Spirulina ... 65 1e-09
gi|4104609 (AF036968) putative histidine kinase [Lactobacillus ... 65 1e-09
gi|1736873|dbj|BAA16014| (D90851) Sensor protein RcsC (EC 2.7.3... 64 2e-09
gi|1653075|dbj|BAA17992| (D90910) sensory transduction histidin... 64 2e-09
gi|416838|sp|P08336|CPXA_ECOLI SENSOR PROTEIN CPXA >gi|541058|p... 64 2e-09
gi|72575|pir||BVECCC regulatory protein rcsC - Escherichia coli... 64 2e-09
gi|147528 (L11272) putative [Escherichia coli] 64 2e-09
gi|1788548 (AE000311) sensor for ctr capsule biosynthesis, prob... 64 2e-09
gi|2507380|sp|P14376|RCSC_ECOLI SENSOR PROTEIN RCSC (CAPSULAR S... 64 2e-09
gi|1736864|dbj|BAA16006| (D90850) Sensor protein RcsC (EC 2.7.3... 64 2e-09
gi|1001174|dbj|BAA10317| (D64001) sensory transduction histidin... 64 3e-09
gi|3294236|emb|CAA19849| (AL031031) putative sensory histidine ... 63 4e-09
gi|78352|pir||S01377 chemotaxis protein cpxA - Escherichia coli... 63 4e-09
gi|73051|pir||RGECAR aerobic respiration control protein arcB -... 63 5e-09
gi|2808665|emb|CAA11376| (AJ223460) flhS [Paracoccus denitrific... 62 6e-09
gi|3237373 (AF041833) putative sensor kinase [Providencia stuar... 62 6e-09
gi|1653308|dbj|BAA18223| (D90912) sensory transduction histidin... 62 6e-09
gi|1161055 (L43136) sensor kinase [Methylobacterium extorquens] 62 6e-09
gi|6458911|gb|AAF10744.1|AE001966_6 (AE001966) sensory box sens... 62 8e-09
gi|2662475 (AF034770) putative ethylene receptor [Dianthus cary... 62 8e-09
gi|1122856|emb|CAA63920| (X94231) TorS [Escherichia coli] 62 8e-09
gi|2507382|sp|P39453|TORS_ECOLI SENSOR PROTEIN TORS >gi|1787227... 62 8e-09
gi|1122445 (U38666) ethylene receptor [Solanum lycopersicum] >g... 62 8e-09
gi|984157|emb|CAA90808| (Z54099) ethylene receptor [Lycopersico... 62 8e-09
gi|3320466 (AF071215) RcsC [Proteus mirabilis] 62 1e-08
gi|3980224|emb|CAA10326.1| (AJ131213) sensory histidine kinase ... 62 1e-08
gi|2388949|emb|CAB11683.1| (Z98978) putatve sensory transductio... 61 1e-08
gi|3581851|emb|CAA20807| (AL031541) putative two-component sens... 61 1e-08
gi|3122318|sp|P94608|KDPD_CLOAB SENSOR PROTEIN KDPD >gi|1747434... 61 1e-08
gi|730806|sp|P39664|SPHS_SYNP7 SENSOR PROTEIN SPHS >gi|421361|p... 61 2e-08
gi|1653819|dbj|BAA18730| (D90916) sensory transduction histidin... 61 2e-08
gi|4164161|dbj|BAA37137| (AB015497) ethylene response sensor [P... 61 2e-08
gi|585055|sp|Q03228|DIVJ_CAUCR HISTIDINE PROTEIN KINASE DIVJ >g... 61 2e-08
gi|420780|pir||A46414 histidine protein kinase divJ - Caulobact... 61 2e-08
gi|1168485|sp|P22763|ARCB_ECOLI AEROBIC RESPIRATION CONTROL SEN... 61 2e-08
gi|541207|pir||S41888 envZ protein - Salmonella typhi 61 2e-08
gi|1352371|sp|P41406|ENVZ_SALTI OSMOLARITY SENSOR PROTEIN ENVZ ... 61 2e-08
gi|6458916|gb|AAF10748.1|AE001967_1 (AE001967) sensor histidine... 60 3e-08
gi|1350837|sp|P49246|RPFC_XANCP SENORY/REGULATORY PROTEIN RPFC ... 60 3e-08
gi|6458613|gb|AAF10470.1|AE001942_2 (AE001942) sensor histidine... 60 3e-08
gi|2460283 (AF024654) hybrid histidine kinase DHKB [Dictyosteli... 60 3e-08
gi|119395|sp|P08982|ENVZ_SALTY OSMOLARITY SENSOR PROTEIN ENVZ >... 60 4e-08
gi|6137053|emb|CAB59608.1| (AL132662) putative histidine kinase... 59 7e-08
gi|6226707|sp|P33113|SPAK_BACSU SUBTILIN BIOSYNTHESIS SENSOR PR... 59 7e-08
gi|2120819|pir||S58233 PopQ protein - Rhizobium leguminosarum >... 59 7e-08
gi|2353767 (AF016236) DMSO/TMAO-sensor kinase [Rhodobacter spha... 59 7e-08
gi|1574212 (U32818) phosphate regulon sensor protein (phoR) [Ha... 59 1e-07
gi|1679757 (U77605) two-component histidine kinase CHK-1 [Glome... 59 1e-07
gi|4106623|emb|CAA21378| (AL031866) ORF55, len 803 aa, this ORF... 58 1e-07
gi|130128|sp|P23837|PHOQ_ECOLI SENSOR PROTEIN PHOQ >gi|281952|p... 58 2e-07
gi|2982944 (AE000679) histidine kinase sensor protein [Aquifex ... 58 2e-07
gi|6425101|gb|AAF08300.1| (AF113748) ethylene receptor homolog ... 58 2e-07
gi|2815357|emb|CAA16480| (AL021530) putative turgor pressure se... 58 2e-07
gi|119394|sp|P02933|ENVZ_ECOLI OSMOLARITY SENSOR PROTEIN ENVZ >... 57 2e-07
gi|1401270 (U59741) RcaE [Fremyella diplosiphon] 57 2e-07
gi|5006604|gb|AAD37576.1|AF141928_1 (AF141928) ethylene recepto... 57 3e-07
gi|2801651|gb|AAB97416.1| (AF042096) putative sensor protein [B... 57 3e-07
gi|3402275|emb|CAA70147| (Y08950) EnvZ protein [Yersinia entero... 57 3e-07
gi|1575689 (U70379) histidine protein kinase [Synechococcus PCC... 57 3e-07
gi|72574|pir||VZEBPT virulence membrane protein phoQ - Salmonel... 57 4e-07
gi|3025461 (U58131) PhoR [Clostridium acetobutylicum] 56 5e-07
gi|5830539|emb|CAB54579.1| (AJ006397) histidine kinase [Strepto... 56 6e-07
gi|5353564|gb|AAD42181.1|AF130997_2 (AF130997) protein kinase [... 56 6e-07
gi|226292|prf||1505375A vir gene [Bordetella pertussis] 56 6e-07
gi|2648416 (AE000958) signal-transducing histidine kinase [Arch... 56 6e-07
gi|2739133 (AF029787) developmental histidine kinase sensor [My... 55 8e-07
gi|2649708 (AE001042) signal-transducing histidine kinase [Arch... 55 8e-07
gi|6460234|gb|AAF11961.1|AE002072_3 (AE002072) sensor histidine... 55 1e-06
gi|6460469|gb|AAF12175.1|AE001862_1 (AE001862) sensor histidine... 54 2e-06
gi|2649119 (AE001003) signal-transducing histidine kinase [Arch... 54 2e-06
gi|5830521|emb|CAB54567.1| (AJ006391) histidine kinase [Strepto... 53 3e-06
gi|130129|sp|P14147|PHOQ_SALTY VIRULENCE SENSOR PROTEIN PHOQ >g... 53 4e-06
gi|1706359|sp|Q03069|DEGM_BACSP SENSOR PROTEIN DEGM >gi|2126826... 53 6e-06
gi|3122321|sp|P96372|KDPD_MYCTU SENSOR PROTEIN KDPD >gi|1870000... 52 7e-06
gi|1652028|dbj|BAA16953| (D90902) regulatory components of sens... 52 7e-06
gi|732226|sp|Q06067|ATOS_ECOLI SENSOR PROTEIN ATOS >gi|290419 (... 52 7e-06
gi|585964|sp|Q06904|SASA_SYNP7 ADAPTIVE-RESPONSE SENSORY-KINASE... 52 7e-06
gi|1708883|sp|P54301|LUXN_VIBHA SENSOR PROTEIN LUXN >gi|487038|... 52 1e-05
gi|6578850|gb|AAF18102.1|AF204400_2 (AF204400) FrgB [Myxococcus... 52 1e-05
gi|6689207|emb|CAB65401.1| (AJ012052) VicK protein [Staphylococ... 51 2e-05
gi|5566398|gb|AAD45389.1|AF166333_1 (AF166333) histidine protei... 51 2e-05
gi|5114231|gb|AAD40238.1|AF136709_2 (AF136709) histidine kinase... 51 2e-05
gi|5830533|emb|CAB54575.1| (AJ006395) histidine kinase [Strepto... 51 2e-05
gi|2649045 (AE000997) signal-transducing histidine kinase [Arch... 51 2e-05
gi|2222757|emb|CAB09955| (Z97182) hypothetical protein Rv0601c ... 51 2e-05
gi|508715 (L22436) pilin transcriptional activator [Pseudomonas... 51 2e-05
gi|628492|pir||S45584 pilS protein - Pseudomonas aeruginosa 51 2e-05
gi|464393|sp|P33639|PILS_PSEAE SENSOR PROTEIN PILS >gi|479396|p... 50 3e-05
gi|2650436 (AE001092) signal-transducing histidine kinase [Arch... 50 3e-05
gi|1170663|sp|Q08430|KINB_BACSU SPORULATION KINASE B >gi|223121... 50 5e-05
gi|1934780|emb|CAB07911| (Z93933) sporulation-specific ATP-depe... 50 5e-05
gi|5712282|gb|AAD47419.1|AF100457_2 (AF100457) histidine kinase... 49 6e-05
gi|4103329 (AF022772) sensor protein [Erwinia carotovora subsp.... 48 1e-04
gi|421510|pir||S32935 kinB protein - Bacillus subtilis 47 3e-04
gi|2648833 (AE000984) signal-transducing histidine kinase [Arch... 46 4e-04
gi|2500765|sp|Q47745|VANS_ENTFA SENSOR PROTEIN VANSB (VANCOMYCI... 46 5e-04
gi|120208|sp|P10955|FIXL_RHIME SENSOR PROTEIN FIXL >gi|628552|p... 45 0.001
gi|152215 (J03174) fixL protein (5' end pot.); putative [Rhizob... 45 0.001
gi|1710788|sp|P18392|RSTB_ECOLI SENSOR PROTEIN RSTB >gi|1079808... 45 0.001
gi|2293176 (AF008220) signal transduction protein kinase [Bacil... 44 0.002
gi|809670|emb|CAA68601| (Y00538) phoM protein (1 is 3rd base in... 44 0.003
gi|4512392|dbj|BAA75355.1| (AB011838) similar to B.subtilis yts... 44 0.003
gi|1171794|sp|P41788|NTRB_SALTY NITROGEN REGULATION PROTEIN NR(... 44 0.003
gi|2127245|pir||B48965 subtilin biosynthesis regulator SpaK - B... 44 0.003
gi|143571 (L07785) spaK [Bacillus subtilis] 44 0.003
gi|1653468|dbj|BAA18382| (D90913) regulatory components of sens... 43 0.005
gi|2160529 (U60193) two component response regulator [Ralstonia... 42 0.008
gi|3355688|emb|CAA19988| (AL031124) hypothetical protein SC1C2.... 42 0.011
gi|120207|sp|P23222|FIXL_BRAJA SENSOR PROTEIN FIXL >gi|39523|em... 41 0.014
gi|95149|pir||S13330 fixL protein - Bradyrhizobium japonicum 41 0.014
gi|3253211 (AF029714) unknown [Pseudomonas putida] 41 0.014
gi|3041695|sp|P16497|KINA_BACSU SPORULATION KINASE A (STAGE II ... 40 0.031
gi|143631 (M29450) SpoIIJ protein (gtg start codon) [Bacillus s... 40 0.031
gi|3258290|dbj|BAA30973.1| (AP000007) 507aa long hypothetical m... 40 0.031
gi|5726301|gb|AAD48403.1|AF129010_2 (AF129010) histidine protei... 38 0.16
gi|5902000|ref|NP_008917.1|| melanoma antigen, family D, 1 >gi|... 34 3.1
gi|98987|pir||S15275 cutS protein - Streptomyces lividans 34 3.1
gi|6599270|emb|CAB63752.1| (AL133628) hypothetical protein [Hom... 34 3.1
gi|126848|sp|P21822|MCPS_ENTAE METHYL-ACCEPTING CHEMOTAXIS SERI... 34 3.1
gi|60643|emb|CAA28795| (X05147) 237K ORF [Beet necrotic yellow ... 34 3.1
gi|225713|prf||1311315A RNA 1 [Beet necrotic yellow vein virus] 34 3.1
gi|1304013|dbj|BAA12339| (D84410) 237k protein [Beet necrotic y... 34 3.1
gi|120546|sp|P18769|FRZE_MYXXA GLIDING MOTILITY REGULATORY PROT... 33 4.0
gi|3257489|dbj|BAA30172| (AP000004) 215aa long hypothetical pro... 33 5.3
gi|3411254 (AF080247) prolactin receptor [Tilapia mossambica] 32 6.9
gi|137716|sp|P26548|VE4_HPV51 PROBABLE E4 PROTEIN >gi|73432|pir... 32 9.0
>gi|1729784|emb|CAA70932| (Y09798) colS [Pseudomonas fluorescens]
Length = 425
Score = 165 bits (414), Expect = 5e-40
Identities = 105/308 (34%), Positives = 162/308 (52%), Gaps = 5/308 (1%)
Frame = +1
Query: 169 YKLAVRKADDAWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVS 348
Y V D + L D ++ ER L + + ++ L++ +GW A +VM PV
Sbjct: 104 YHAMVEIVDGRHYVLLQDQSDFEERERVLFAVVLVGFVLSLALAVFLGWVLARRVMAPVV 163
Query: 349 DLAKLLRTYRGQTTN-PKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHE 525
LA+ +R +R Q PLAP + DEVGELA A D RL + + R+R F +DVSHE
Sbjct: 164 RLARQVR-HRDQLLGLAPPLAPDYAADEVGELAVAFDATLGRLRQALTRERLFTSDVSHE 222
Query: 526 LRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGS-- 699
LRTPL V+ + ELLL P +D + A ++ +L+ L+L+R +R
Sbjct: 223 LRTPLMVLATSCELLLENPALDLRGRTQVERINRASEEMRELVQTFLMLARAQRDDNGMS 282
Query: 700 --SNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTL 873
SN+A+VAE LL R + K + LI E L + L+ +GNL+ NA+ YT
Sbjct: 283 PRSNLAQVAENLLGVWRDPIESKGLTLIFEPGQTLDTLYNATFLTAVMGNLLRNALHYTD 342
Query: 874 EGRVTVRVLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLY 1053
+G + + + ++D+G G+ E+ +F+ RG +G G+GLS+V R+C+
Sbjct: 343 QGFIRLSLSATGFVVEDSGVGIPEEKREAMFEPFVRGNEK-RGEGLGLGLSLVQRICENQ 401
Query: 1054 GWKVSVQPGDSYG 1092
GW VS+ + G
Sbjct: 402 GWTVSLSTMEPNG 414
>gi|987096|emb|CAA60456| (X86780) sensory protein kinase [Streptomyces
hygroscopicus]
Length = 399
Score = 117 bits (291), Expect = 1e-25
Identities = 94/313 (30%), Positives = 150/313 (47%), Gaps = 9/313 (2%)
Frame = +1
Query: 175 LAVRKADDAWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLL---IGWWSASKVMKPV 345
L R D F D T + L++ + S + ++LL +GWW A + ++PV
Sbjct: 77 LTQRAPGDVAMFQKIDQTVRAVQDTALRQMVLWSAVGLLAMALLAGVLGWWLAGRALRPV 136
Query: 346 SDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHE 525
+ + + R Q+ + + LA PDDE+ LA D RL + + R F A+ SHE
Sbjct: 137 ASMTETARRISEQSLHQR-LALTGPDDELHRLADTFDTMLDRLEKSFESQRRFVANASHE 195
Query: 526 LRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSN 705
L+TPL V R + ++ L P + A + LI LLLL+R++RG +
Sbjct: 196 LKTPLTVQRTSLQVGLADP-LPEGLADVREDLLTANHEAEQLINGLLLLARSDRGLEKTQ 254
Query: 706 VAKVAE--QLLDSHRAQLGGKR-IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE 876
VA +L+ + L K + + L+ L V L L NL+ NA++Y
Sbjct: 255 TMDVAAIVRLVSTGLTPLATKNGVRIDLDADTPLAVPGDPVLLRHLLTNLVRNAIQYNHP 314
Query: 877 -GRVTVRVLEKAVEIQDTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCD 1047
G V +R+ V + +TGP +S + LF+ +R G + G G+GLSI + +
Sbjct: 315 GGHVRIRLDTPTVTVTNTGPHVSPEQIPDLFEPFHRLDGDRTA-TTGHGLGLSIAHSIAN 373
Query: 1048 LYGWKVSVQPGDSYGVIATLRF 1113
+ ++ QPG G+ TLRF
Sbjct: 374 AHHATLTAQPGTEGGLTLTLRF 395
>gi|2182835 (U81166) histidine kinase LlkinA [Lactococcus lactis
cremoris]
Length = 490
Score = 104 bits (257), Expect = 1e-21
Identities = 97/301 (32%), Positives = 155/301 (51%), Gaps = 17/301 (5%)
Frame = +1
Query: 217 YDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNP 396
YD T R L L I +V ++ +IG++ A+ MKP+ L + ++ TN
Sbjct: 175 YDTTTYHRISNLLLVVLLILEIVALIVAQMIGYFMANYFMKPLEKLYQGMQEMASDPTND 234
Query: 397 -KPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLL 573
KP+ DE+ ELA +D ++ +++ F +DVSHELRTPLAV+ G LL
Sbjct: 235 FKPIEIE-SGDEIEELAHVYNDMMLKMKAYLEQKNRFVSDVSHELRTPLAVLDGHINLLN 293
Query: 574 TKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERGHGSS-----NVAKVAEQLLD 735
+ DP+ E + ++ +L L+R E SS +V KV+ L
Sbjct: 294 RWGKNDPEVLDESLQASLDEVDRMKKMLEEMLALARLENVDLSSEELDCDVGKVSNHALK 353
Query: 736 SHRAQLGGKRIELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGR----VTVRV 897
+ QL + E++L+++ V+A E+ L L+ NAVKY+ R +TV
Sbjct: 354 NF--QLLHEDFEIVLDNQLIYPVHARISENHFEQGLRILLDNAVKYSPHDRKEIVITVSE 411
Query: 898 LEKAV--EIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ--GGGIGLSIVSRLCDLYGWKV 1065
E+ V + D G G++E+D LF+R +R A + + G G+GL I++RL + Y ++
Sbjct: 412 DEQFVITSVSDKGIGIAEEDINHLFERFFRADKARNREIGGTGLGLPILARLAENYQGEI 471
Query: 1066 SVQPGDSYGVIATLRFFK 1119
V G TL+F K
Sbjct: 472 EVSSELGIGSTFTLKFPK 489
>gi|6458453|gb|AAF10322.1|AE001930_3 (AE001930) sensor histidine
kinase [Deinococcus radiodurans]
Length = 566
Score = 102 bits (252), Expect = 5e-21
Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 13/284 (4%)
Frame = +1
Query: 250 QLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDE 429
+L+R I +L + L+ + + A + ++P+ ++ + GQT + P DE
Sbjct: 256 RLQRVFAIVMLFGALLAGTLAYVLAGRALRPLQEVRQAAERIGGQTLTERVPEPQ-TGDE 314
Query: 430 VGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXX 609
V LAR+L+ RL + R F +D SHELRTP+ I G LL + +
Sbjct: 315 VQALARSLNAMLGRLEASFEAQRRFTSDASHELRTPVTAISGHASYLLRRTNPGGQERES 374
Query: 610 XXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQL-LDSHRAQL-----GGKRIE 771
++ ++LI +LL L+R++ G + N A + +L LD +L GG +
Sbjct: 375 LNIIRSESERLTNLITSLLQLARSDSGALTLNPAPIFSRLFLDDVSRELAPLATGGSELR 434
Query: 772 LILEDKHDLTVNAPESALSVALGNLIGNAVK-----YTLEGRVTVRVLEKAVEIQDTGPG 936
+ D+ L + NL+GNA+K TLE E + ++D GPG
Sbjct: 435 V---SGPDIPFEGDPDRLRQVIINLVGNALKAGAKTVTLESSSQEEGREVRLSVRDDGPG 491
Query: 937 LSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIA 1101
+ + ++LF R YR + + G G+GLSI + D +G ++ ++ G +A
Sbjct: 492 IPAEHLSRLFDRFYRVEDSRSRDQGGAGLGLSIAHSIVDAHGGRIWLESEVGRGTVA 548
>gi|1706204|sp|Q03757|CUTS_STRCO CUTS PROTEIN
>gi|1279725|emb|CAA41600| (X58793) cutS protein
[Streptomyces lividans] >gi|2815349|emb|CAA16472|
(AL021530) two-component sensor (kinase) [Streptomyces
coelicolor]
Length = 414
Score = 102 bits (251), Expect = 7e-21
Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 11/320 (3%)
Frame = +1
Query: 139 LDNAGKLFAYYKLAVRKADDAWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWW 318
+DN G + + A+ D +A D + R L L ++V+ F+ G+
Sbjct: 88 VDNGGLSLSDFNAAISDCMDHQRKVALDNLLS----RSLLALLGLAVIAFA-----FGYA 138
Query: 319 SASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDR 498
A +V+ P+ + + R G + + + PDDE+ ELA DD RL +
Sbjct: 139 MAGRVLSPLGRITRTARAVAGSDLSRR-IELDGPDDELKELADTFDDMLERLQRAFTAQQ 197
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
F + SHELRTPLA+ R E+ L+ P + ++ L+ LLLL+R
Sbjct: 198 RFVGNASHELRTPLAINRTLLEVHLSDPGAPVELQQLGKTLLATNERSELLVEGLLLLAR 257
Query: 679 NER---GHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLI 849
++ ++A+VA Q +D A+ K +E + + V L NL+
Sbjct: 258 SDNQIVERKPVDLAEVAGQAIDQVHAEAESKGVE-VRGTREAAVVQGNGVLLERIALNLV 316
Query: 850 GNAVKYTLEGRVTVRVL------EKAVEIQDTGPGLSEQDAAKLFQ--RGYRGTHAGHSQ 1005
NAV+Y + G+ V V + + + +TGP + + LF+ R R G +
Sbjct: 317 QNAVRYNVAGQGWVEVATAVENGQAVLVVTNTGPVVPAYEVDNLFEPFRRLRTERTGSDK 376
Query: 1006 GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
G G+GLSI + +G +S QP + G++
Sbjct: 377 GVGLGLSIARSVARAHGGHISAQPREGGGLV 407
>gi|6460140|gb|AAF11875.1|AE002064_6 (AE002064) sensor histidine
kinase [Deinococcus radiodurans]
Length = 502
Score = 101 bits (249), Expect = 1e-20
Identities = 81/271 (29%), Positives = 129/271 (46%), Gaps = 7/271 (2%)
Frame = +1
Query: 295 LSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRL 474
L+L +GWW A ++++PV L + PL DE+ LA L RL
Sbjct: 209 LALGLGWWVAGRLLRPVQALEGAAQAIGSGGDLRTPLPGAGAGDELARLALTLQQSFGRL 268
Query: 475 TEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDL 651
+ +R++ F +H+LR+PLA ++ + L + E DP+ + + S L
Sbjct: 269 ADSREREQAFLRAAAHDLRSPLAALQARVDGTLAR-ERDPERYQHDLRELGRDLTRLSTL 327
Query: 652 IGALLLLSRNERGHGSSNVA--KVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESAL 825
LLLL+R+ + V +A +D RA+ ++ L LTV L
Sbjct: 328 ANHLLLLARDPSALARAPVPLRDLAADAVD--RARELDPLADVDLLPCPPLTVQGDRVLL 385
Query: 826 SVALGNLIGNAVKYTLEGRVTVRVLEKA----VEIQDTGPGLSEQDAAKLFQRGYRGTHA 993
A+ NL NAV++ E VTVRV + V +QD GPG+S + AKL + YR + +
Sbjct: 386 GQAIWNLTANAVRHAPEATVTVRVSQGGPWARVTVQDDGPGVSPEVLAKLGEAFYRPSES 445
Query: 994 GHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G G+GL++ R +L+G ++ + G A L
Sbjct: 446 RSGDGHGLGLALARRAAELHGGELQLSSAPGQGFCAEL 483
>gi|399098|sp|P30844|BASS_ECOLI SENSOR PROTEIN BASS/PMRB
>gi|478429|pir||JX0285 sensory kinase basS - Escherichia
coli >gi|216539|dbj|BAA03144| (D14055) BasS [Escherichia
coli] >gi|536956 (U14003) basS gene product [Escherichia
coli] >gi|1790551 (AE000483) sensor protein for basR
[Escherichia coli]
Length = 363
Score = 99.1 bits (243), Expect = 6e-20
Identities = 83/273 (30%), Positives = 136/273 (49%), Gaps = 11/273 (4%)
Frame = +1
Query: 235 IRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPH 414
+R R+ +L + + L+L I + + ++ +P+++L K L N P+A H
Sbjct: 59 MREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQKELEARTAD--NLTPIAIH 116
Query: 415 FPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDP 594
E+ + AL+D SRLT + +R F ADV+HELRTPLA +R ELL +D
Sbjct: 117 SATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHHID- 175
Query: 595 KXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNV--AKVAEQLL----DSHRAQLG 756
Q + + LL L+R + S N K+ E ++ D L
Sbjct: 176 -----VAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLEDVILPSYDELSTMLD 230
Query: 757 GKRIELIL-EDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVLE---KAVEIQ 921
++ L+L E D+TV + L + L NL+ NA +Y+ +G + +++ E + ++
Sbjct: 231 QRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDDGAVMAVE 290
Query: 922 DTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLY 1053
D GPG+ E +L + R G G+GLSIVSR+ L+
Sbjct: 291 DEGPGIDESKCGELSKAFVR--MDSRYGGIGLGLSIVSRITQLH 332
>gi|4980904|gb|AAD35485.1|AE001719_11 (AE001719) sensor histidine
kinase [Thermotoga maritima]
Length = 405
Score = 99.1 bits (243), Expect = 6e-20
Identities = 63/206 (30%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
+ F+ D SHEL+TPL+V++ + ++L + ++ ++ S I LLLL
Sbjct: 194 KRFSMDASHELKTPLSVLKTSLDVLKYREDLPDDVKNKLGIMEKNVEKMSKQINQLLLLV 253
Query: 676 RNERGHGSS-----NVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALG 840
++E S N+ +Q++D + + K +EL ++ DL + + L V L
Sbjct: 254 KSEGSLNSVVKERINLKDFLQQIVDEFKPKAESKGLELEIDCPEDLFLETEKDTLRVILE 313
Query: 841 NLIGNAVKYTLEGRVTVRVLEK---AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGG 1011
NL+ NAVK+T +G+V V ++ + +QDTGPG+ +++ ++F+R YR + +++G
Sbjct: 314 NLVDNAVKFTEKGKVIVGARKEGRLTIYVQDTGPGIPKKEQKRIFERFYRISR--NTEGS 371
Query: 1012 GIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
G+GLSIV L KV ++ + G L F
Sbjct: 372 GLGLSIVKELASRLKAKVILESEEGKGSTFKLVF 405
>gi|6460835|gb|AAF12539.1|AE001826_8 (AE001826) sensor histidine
kinase, copper metabolism, putative [Deinococcus
radiodurans]
Length = 451
Score = 97.9 bits (240), Expect = 1e-19
Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 7/299 (2%)
Frame = +1
Query: 211 LAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTT 390
+A D+ + R RAL ++V + L L+ A ++++PV+ L + GQ
Sbjct: 125 IASDVLGVVDPLRAYLRALAVTVPAAALLVALLSSALAGRLLRPVARL-QAAAARLGQGN 183
Query: 391 NPK-PLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATEL 567
N + PL DE+G LA L ++L +V +R+ EF +H+LR+PLA ++ +
Sbjct: 184 NLRLPLPGAGRSDELGRLADTLQTSFTQLADVREREEEFTRAAAHDLRSPLAALKVRLQG 243
Query: 568 LLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNER--GHGSSNVAKVAEQLLDSH 741
L P + + + L LLLL+R R ++A +A + +D
Sbjct: 244 SLATPRSEAELRENMREALADVDRMQRLTDHLLLLARGTRTVHLRPVDLADLAGEAVD-- 301
Query: 742 RAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----A 909
RA+ + L E D + E+ L+ L NLIGN +Y +TVRV +
Sbjct: 302 RARETAPDVRLDFETWGDTLIPGDEALLTRLLENLIGNGRRYGQGADMTVRVWGEPDRVR 361
Query: 910 VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSY 1089
+ +QD GPG+ + +L + Y+ A +G G+GL+IV R+ L+G V +
Sbjct: 362 LTVQDAGPGVPAEALPRLTEPFYQVDAARSGEGNGLGLAIVDRIVQLHGGTVLFEATRPR 421
Query: 1090 GVIATL 1107
G+ T+
Sbjct: 422 GLCVTV 427
>gi|4539211|emb|CAB39869.1| (AL049497) putative two component sensor
kinase [Streptomyces coelicolor]
Length = 454
Score = 97.5 bits (239), Expect = 2e-19
Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 17/266 (6%)
Frame = +1
Query: 277 VLVFSGLSLL----IGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFP---DDEVG 435
+L SG++LL I W A +++KPV +L+RT Q T + L P D+V
Sbjct: 164 LLAISGVALLMTTGIAWVVAGRILKPV----RLVRTTAAQLTE-QDLTRRIPVHGHDDVA 218
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
LA + RL R F D HELRTP+ ++RG EL+ P +
Sbjct: 219 ALAETFNAMLDRLERAFATQRRFVDDAGHELRTPITIVRGHLELMGDDP---AEREETVR 275
Query: 616 XXXXAEQQCSDLIGALLLLSRNER-GHGSSNVAKVAEQLLDSH-RAQLGGKRIELILEDK 789
+ S ++ LLLL++ ER + ++AE D +A+ G+R E +L+
Sbjct: 276 LVTDELDRMSRIVEDLLLLAKAERPDFVTPEPVQLAELTADVFVKARTLGER-EWVLDGV 334
Query: 790 HDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA------VEIQDTGPGLSEQD 951
D V+ ++ A+ L NAV++T G+ VR+ +A + + D+GPG+ QD
Sbjct: 335 ADREVHLDPQRITQAMVQLAQNAVQHTTAGQ-RVRIGSRADGWRIELYVADSGPGVQPQD 393
Query: 952 AAKLFQRGYRGT--HAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
A +F+R RGT G G+GLSIV + + +G +V ++
Sbjct: 394 AEVIFERFRRGTARRGVRGTGAGLGLSIVRAIAEGHGGRVDLR 436
>gi|1176111|sp|P45336|YGIY_HAEIN PROBABLE SENSOR PROTEIN HI1707
>gi|1075296|pir||E64137 sensor protein for basR (basS)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574561 (U32843) sensor protein (ygiY) [Haemophilus
influenzae Rd]
Length = 451
Score = 97.1 bits (238), Expect = 2e-19
Identities = 77/258 (29%), Positives = 131/258 (49%), Gaps = 7/258 (2%)
Frame = +1
Query: 301 LLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTE 480
+++ W K ++P+ L++ ++T + + L E+ L + L+ + R +
Sbjct: 173 IIVLGWLIHKELRPIKRLSQEVQTRKSGDVSL--LNTEGLPVEILPLVKNLNQFFDRTSA 230
Query: 481 VVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGA 660
++QR+R F +D +HELR+PLA +R E+ + + S LI
Sbjct: 231 MLQRERRFTSDAAHELRSPLAALRIQIEVAQLAGDDVALREQALLHLTQGIDRASQLIEQ 290
Query: 661 LLLLSRNERGHGSSNVA----KVAEQLLDSHRAQLGGKR-IELILEDKHDLTVNAPESAL 825
LL LSR + + + Q L S R + KR I L+ E + + +S L
Sbjct: 291 LLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKESEPKQKQGQSIL 350
Query: 826 -SVALGNLIGNAVKYTLEGR-VTVRVLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGH 999
S+ L NL+ NA+KY E V+V++ + I+D G G+ +D KL QR YR +
Sbjct: 351 VSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPA-GQN 409
Query: 1000 SQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+G G+GLSIV R+ +L+G+KV ++
Sbjct: 410 EKGSGLGLSIVMRIAELHGFKVRLE 434
>gi|548536|sp|P36557|BASS_SALTY SENSOR PROTEIN BASS/PMRB
>gi|538803|pir||C40656 regulatory protein pmrB -
Salmonella typhimurium (strain LT2) >gi|295212 (L13395)
pmrB [Salmonella typhimurium]
Length = 356
Score = 97.1 bits (238), Expect = 2e-19
Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 11/269 (4%)
Frame = +1
Query: 247 RQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDD 426
R+ +L + + L+LLI + + ++ +P+++L K L N P+A H
Sbjct: 63 REAVASLIVPGVFMVSLTLLICYQAVRRITRPLAELQKELEARTAD--NLAPIAIHSSTL 120
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E+ + A++ +RLT + +R F ADV+HELRTPL+ +R ELL +D
Sbjct: 121 EIESVVSAINQLVTRLTTTLDNERLFTADVAHELRTPLSGVRLHLELLSKTHNVD----- 175
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNV--AKVAEQLL----DSHRAQLGGKRI 768
Q D + LL L+R + S N K+ E ++ D L ++
Sbjct: 176 -VAPLIARLDQMMDSVSQLLQLARVGQSFSSGNYQEVKLLEDVILPSYDELNTMLETRQQ 234
Query: 769 ELIL-EDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVL---EKAVEIQDTGP 933
L+L E D+ V + L + L NL+ NA +Y+ EG +T+ + + + ++D GP
Sbjct: 235 TLLLPESAADVVVRGDATLLRMLLRNLVENAHRYSPEGTHITIHISADPDAIMAVEDEGP 294
Query: 934 GLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLY 1053
G+ E KL + R G G+GLSIVSR+ L+
Sbjct: 295 GIDESKCGKLSEAFVR--MDSRYGGIGLGLSIVSRITQLH 332
>gi|6459371|gb|AAF11166.1|AE002004_5 (AE002004) sensor histidine
kinase [Deinococcus radiodurans]
Length = 433
Score = 97.1 bits (238), Expect = 2e-19
Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 12/289 (4%)
Frame = +1
Query: 244 ERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPD 423
E L+R +S L LSLL GW A +V + + L L+ + Q +P P+
Sbjct: 138 EHLLRRYALLSGLSLLALSLLAGWVVAKQVRRTLRPLESLVGRVQ-QLDSPDPIPALEQP 196
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
DEVG LARAL L +R+ F A SHELRTP+ + + L++P +
Sbjct: 197 DEVGALARALQSSLDALRAERERETLFLASASHELRTPVTAMLADVQHTLSRPRPPDELR 256
Query: 604 XXXXXXXXAEQQCSDLIGALLLLS------RNERGHGSSNVAKVAEQLLDSHRAQLGGKR 765
+ L G L+ L+ ++ +A + +D + G+
Sbjct: 257 AALMRAEQTASRLRLLTGNLMTLTWVQSLPEPRAAWRQLDLLHLAGEAVDRLQPLSLGRG 316
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYT-LEGRVTVRVLE-----KAVEIQDT 927
+EL L D + V+ LS NLIGNA+K+T G V VRV + +QDT
Sbjct: 317 VELWL-DGQEAPVSGEAGLLSSVAENLIGNAIKFTPAGGEVQVRVTPLPNGGAELVVQDT 375
Query: 928 GPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
GPG F RG +G G+GL++V ++ D +G + + + G +
Sbjct: 376 GPGFPPGTLTGAFVRGQTDV-----EGFGLGLAVVQQVVDAHGGTLELGRAEGGGARVVV 430
Query: 1108 R 1110
R
Sbjct: 431 R 431
>gi|1550636|emb|CAB02401| (Z80226) phoR [Mycobacterium tuberculosis]
Length = 485
Score = 96.3 bits (236), Expect = 4e-19
Identities = 109/355 (30%), Positives = 167/355 (46%), Gaps = 37/355 (10%)
Frame = +1
Query: 7 PSHSPDLPVQQIKAFYYPRDKFDRVRLERPDWAALPN-------GNHNVIGLDNAGKLFA 165
P H+PD P + D L D A+P G H G
Sbjct: 70 PGHNPDRPPSRFYVRVISPDGQSYTALN--DNTAIPAVPANNDVGRHPTTLPSIGGSKTL 127
Query: 166 YYKLAVRKADDAWFFLAYDMTEA---IRGERQLKRALYISVLVFSGLSLLIGWWSASKVM 336
+ ++VR +D +A D+ + +R L+ + +VLV G++ G+ + +
Sbjct: 128 WRAVSVRASDGYLTTVAIDLADVRSTVRSLVLLQVGIGSAVLVVPGVA---GYAVVRRSL 184
Query: 337 KPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVV---------- 486
+P+++ + G + + P EVG L+ AL+ +++ V
Sbjct: 185 RPLAEFEQTAAAI-GAGQLDRRVPQWHPRTEVGRLSLALNGMLAQIQRAVASAESSAEKA 243
Query: 487 ----QRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLI 654
R R+F D SHELRTPL IRG EL D + L+
Sbjct: 244 RDSEDRMRQFITDASHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGL--LV 301
Query: 655 GALLLLSRNERGHGSSNVAKV-----AEQLLDSHRAQLGGKRIEL-ILEDKHDLTVNAPE 816
LLLL+R + H + +V A RA +RI L +L+ V E
Sbjct: 302 DDLLLLARLD-AHRPLELCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDE 360
Query: 817 SALSVALGNLIGNAVKYTLEGR-VTVRVLEKA----VEIQDTGPGLSEQDAAKLFQRGYR 981
S L L NL+ NA+++T E VTVRV + +E+ D GPG+S++DA ++F+R YR
Sbjct: 361 SRLRQVLRNLVANAIQHTPESADVTVRVGTEGDDAILEVADDGPGMSQEDALRVFERFYR 420
Query: 982 --GTHAGHSQGGGIGLSIVSRLCDLYGWKVSV 1071
+ A S G G+GLSIV L +G V+V
Sbjct: 421 ADSSRARASGGTGLGLSIVDSLVAAHGGAVTV 452
>gi|2961075 (AF029846) TctE [Salmonella typhi]
Length = 439
Score = 95.6 bits (234), Expect = 7e-19
Identities = 78/277 (28%), Positives = 134/277 (48%), Gaps = 16/277 (5%)
Frame = +1
Query: 223 MTEAIRGERQLKRALYISVLVFSGL----SLLIGWWSASKVMKPVSDLAKLL-RTYRGQT 387
+ E ++ R L L S + GL +L++ W ++++P+ L+ L+ R G
Sbjct: 123 VAETLQSRRYLAGQLLFSSWISQGLLVLLTLVLVGWLLRRILRPMRQLSSLMVRREPGLL 182
Query: 388 TNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIR--GAT 561
T PL P E L A + Y RL ++ R F+AD SH+L+TPLAV++ A
Sbjct: 183 T---PLPELLPWSETRLLIVAFNRYIDRLRGILSRQERFSADASHQLKTPLAVLKTQAAV 239
Query: 562 ELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGH---GSSNVAKVAEQLL 732
L P + + Q ++ + L + E+G N+ + +
Sbjct: 240 ALASQHPHHWYESLQAMSVTLDSTIQLTERLLQLSAVKHKEQGERRFSPVNLYDIVQSGC 299
Query: 733 DSHRAQLGGKRIELILEDKHD-LTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK- 906
+ AQ K I+L E + + + + E LS GNL+ NA+KYT E + LE+
Sbjct: 300 FTRLAQARSKHIDLGYEGEQEAMWIEGDEVLLSELCGNLLDNALKYTPEQGIVTARLERD 359
Query: 907 ----AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLY 1053
+ ++D+GPG+ + Q +R + G+ G GIGL++V+ + L+
Sbjct: 360 GDAVTLVVEDSGPGIDNEHIHLALQPFHRLDNVGNVAGAGIGLALVNDIARLH 412
>gi|117436|sp|P08401|CREC_ECOLI SENSOR PROTEIN CREC
>gi|72571|pir||RGECFM regulatory protein phoM -
Escherichia coli >gi|147251 (M13608) phoM [Escherichia
coli]
Length = 474
Score = 95.2 bits (233), Expect = 9e-19
Identities = 83/292 (28%), Positives = 150/292 (50%), Gaps = 13/292 (4%)
Frame = +1
Query: 244 ERQLKRALYISVLVFSGLSLLIG----WWSASKVMKPVSDLAKLLRTYRGQTTNPKPLA- 408
+R +R L+ S ++ G++L+IG WW + + L Y T+ KP+
Sbjct: 178 KRSERRILWASAILL-GIALVIGAGMVWWINRSIAR--------LTRYADSVTDNKPVPL 228
Query: 409 PHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT--KP 582
P E+ +LA+AL+ +L E ++ ++HEL++PLA IRGA E+L P
Sbjct: 229 PDLGSSELRKLAQALESMRVKL-EGKNYIEQYVYALTHELKSPLAAIRGAAEILREGPPP 287
Query: 583 EMDPKXXXXXXXXXXAEQQCSD-LIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGG 759
E+ + Q + L+ L +R E + +VA + ++ ++ QL
Sbjct: 288 EVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTAVDVAALFRRVSEARTVQLAE 347
Query: 760 KRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVL----EKAVEIQD 924
K+I L + ++ V A + L ALGNL+ NA+ +T E G +T+ +++ D
Sbjct: 348 KKITLHVTPT-EVNVAAEPALLEQALGNLLDNAIDFTPESGCITLSAEVDQEHVTLKVLD 406
Query: 925 TGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIAT 1104
TG G+ + +++F+R Y A + G+GL+ VS + L+ +V+++ GV+A+
Sbjct: 407 TGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFNGEVTLRNVQEGGVLAS 466
Query: 1105 LRFFK 1119
LR +
Sbjct: 467 LRLHR 471
>gi|1361232|pir||S56623 pho regulon positive regulatory protein creC -
Escherichia coli >gi|537239 (U14003) alternate gene name
phoM; CG Site No. 395 [Escherichia coli] >gi|1790861
(AE000510) catabolite repression sensor kinase for PhoB;
alternative sensor for pho regulon [Escherichia coli]
Length = 474
Score = 95.2 bits (233), Expect = 9e-19
Identities = 83/292 (28%), Positives = 150/292 (50%), Gaps = 13/292 (4%)
Frame = +1
Query: 244 ERQLKRALYISVLVFSGLSLLIG----WWSASKVMKPVSDLAKLLRTYRGQTTNPKPLA- 408
+R +R L+ S ++ G++L+IG WW + + L Y T+ KP+
Sbjct: 178 KRSERRILWASAILL-GIALVIGAGMVWWINRSIAR--------LTRYADSVTDNKPVPL 228
Query: 409 PHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT--KP 582
P E+ +LA+AL+ +L E ++ ++HEL++PLA IRGA E+L P
Sbjct: 229 PDLGSSELRKLAQALESMRVKL-EGKNYIEQYVYALTHELKSPLAAIRGAAEILREGPPP 287
Query: 583 EMDPKXXXXXXXXXXAEQQCSD-LIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGG 759
E+ + Q + L+ L +R E + +VA + ++ ++ QL
Sbjct: 288 EVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTAVDVAALFRRVSEARTVQLAE 347
Query: 760 KRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVL----EKAVEIQD 924
K+I L + ++ V A + L ALGNL+ NA+ +T E G +T+ +++ D
Sbjct: 348 KKITLHVTPT-EVNVAAEPALLEQALGNLLDNAIDFTPESGCITLSAEVDQEHVTLKVLD 406
Query: 925 TGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIAT 1104
TG G+ + +++F+R Y A + G+GL+ VS + L+ +V+++ GV+A+
Sbjct: 407 TGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFNGEVTLRNVQEGGVLAS 466
Query: 1105 LRFFK 1119
LR +
Sbjct: 467 LRLHR 471
>gi|3511130 (AF060858) histidine kinase [Salmonella dublin]
Length = 454
Score = 94.8 bits (232), Expect = 1e-18
Identities = 81/277 (29%), Positives = 137/277 (49%), Gaps = 10/277 (3%)
Frame = +1
Query: 271 ISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARA 450
I++LV S LS L+ ++ ++ L++L T P P A E+ L +A
Sbjct: 168 IAILVCSALSPLV----IRNALRAITSLSRLTAASDSGTLRP-PKAEQALPVELRPLGQA 222
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
L+ +L++ +R +F D++HELRTP+ ++ G +++L++ +
Sbjct: 223 LNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEE 282
Query: 631 EQQCSDLIGALLLLSRNERGHGSSNVAK-------VAEQLLDSHRAQLGGKRIELILEDK 789
+ S L +L L+R E H + V K + E +LD KRI I + +
Sbjct: 283 LEGLSRLTENILFLARAE--HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQ 340
Query: 790 HDLTVNAPESALSVALGNLIGNAVKYTLEG---RVTVRVLEKAVEIQDTGPGLSEQDAAK 960
TV A E L L NL+ NA++Y+ E R+ + EI+ PG DA K
Sbjct: 341 G--TVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADK 398
Query: 961 LFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIA 1101
LF+R +RG +A H+ G +GLS+V+ + L+G S + D + + +
Sbjct: 399 LFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNIFS 445
>gi|4726008|emb|CAB41737.1| (AL049731) putative two component sensor
kinase [Streptomyces coelicolor]
Length = 364
Score = 93.6 bits (229), Expect = 3e-18
Identities = 88/277 (31%), Positives = 136/277 (48%), Gaps = 13/277 (4%)
Frame = +1
Query: 277 VLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALD 456
+LVF L+ GW+ A +++ P+ + + RT + + + P DE ELA A D
Sbjct: 73 LLVFG---LVGGWFLAGRMLAPLDRITEATRTAATGSLSHRIRLPG-RRDEYRELADAFD 128
Query: 457 DYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ 636
+ +RL V R F A+ SHELRTPLAV + ++ T P DP
Sbjct: 129 EMLARLEAHVAEQRRFAANASHELRTPLAVSKAILDVARTDPHQDP--GEIIDRLHAVNT 186
Query: 637 QCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQL---GGKRIELILEDKHDLTVN 807
+ DL ALLLLSR G S +V LL + ++ + LE + +T+
Sbjct: 187 RAIDLTEALLLLSR--AGQRSFTREQVDMSLLAEEATETLLPFAEKHGVTLETRGHVTLA 244
Query: 808 APESALSVAL-GNLIGNAVKYTLEGRVTVRVLEKA------VEIQDTGPGLSEQDAAKL- 963
AL + L NL+ NA+ + L GR V + A + +++TG +S A+ L
Sbjct: 245 LGSPALLLQLTTNLVHNAIVHNLPGRGRVWIHTAAGPRTTRLVVENTGDLISPHQASTLT 304
Query: 964 --FQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
FQRG H H G G+GL+IV+ + + +++ P S G+ T+
Sbjct: 305 EPFQRGTERIHTDH-PGVGLGLAIVNTITQAHDGTLTLTPRHSGGLRVTV 353
>gi|1723889|sp|P40719|YGIY_ECOLI PROBABLE SENSOR PROTEIN YGIY
>gi|882556 (U28377) ORF_o449 [Escherichia coli]
>gi|1789403 (AE000384) putative 2-component sensor
protein [Escherichia coli]
Length = 449
Score = 90.1 bits (220), Expect = 3e-17
Identities = 77/262 (29%), Positives = 126/262 (47%), Gaps = 8/262 (3%)
Frame = +1
Query: 280 LVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDD 459
LV + L+I + + P++ LA LR + KPL EV L +L+
Sbjct: 168 LVALPIMLIIMMVLLGRELAPLNKLALALRMR--DPDSEKPLNATGVPSEVRPLVESLNQ 225
Query: 460 YSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQ 639
+R ++ R+R F +D +HELR+PL ++ TE+ + +
Sbjct: 226 LFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDR 285
Query: 640 CSDLIGALLLLSRNERGHGSSNVAKV-AEQLLDS------HRAQLGGKRIELILEDKHDL 798
+ L+ LL LSR + +VA++ E LL S H AQ + L L + H +
Sbjct: 286 ATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTL-NAHSI 344
Query: 799 TVNAPESALSVALGNLIGNAVKYTLEGRVT-VRVLEKAVEIQDTGPGLSEQDAAKLFQRG 975
LS+ + NL+ NAV+Y+ +G V V + ++D GPG++ + A++ +R
Sbjct: 345 KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGVTPEALARIGERF 404
Query: 976 YRGTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
YR + G G+GLSIV R+ L+G V
Sbjct: 405 YR-PPGQTATGSGLGLSIVQRIAKLHGMNV 433
>gi|1834376|emb|CAA70860| (Y09666) RagB [Bradyrhizobium japonicum]
Length = 474
Score = 89.7 bits (219), Expect = 4e-17
Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 11/273 (4%)
Frame = +1
Query: 259 RALYISVLVFSGLSLLIGWWSASKVMKPVSDL-AKLLRTYRGQTTNPKPLAPHFPDDEVG 435
+AL + +L L LL G W + + + V ++ ++ R G+ P DD
Sbjct: 158 QALALGLLPAFSLCLLAGAWLSIRAQRRVEEVNQRVQRIVAGELRERLPEGG--TDDPFA 215
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
LA ++ + ++ D++H+LRTPL +R A E T
Sbjct: 216 RLAGIVNGMLDEMETMINALAGVGNDIAHDLRTPLTRVRLALERGRTHAATLEDLQEITD 275
Query: 616 XXXXAEQQCSDLIGALLLLSRNER-----GHGSSNVAKVAEQLLDSHRAQLGGKRIELIL 780
Q ++ ALL L+ E G G + ++ ++ D + KRI L +
Sbjct: 276 KAIAGIDQSLAIVTALLRLTEIENNRRMAGFGEVALDEILREVCDVYEPIAEDKRIALGV 335
Query: 781 EDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA-----VEIQDTGPGLSE 945
+ ++ V L A+ NL+ NAVK+T G LE V + DTGPG+ E
Sbjct: 336 VIERNVQVWGDRDLLFEAVANLVDNAVKFTPSGGRVELALEAEDGTALVRVSDTGPGIRE 395
Query: 946 QDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQP 1077
Q+ + +R YR ++ G G+GLS+V+ + L+G+++ V P
Sbjct: 396 QEREAVLRRFYRSDKMRNTPGVGLGLSLVAAIVKLHGFRLIVGP 439
>gi|4467966|emb|CAB37946| (AJ133131) putative histidine kinase (PhoR1)
[Myxococcus xanthus]
Length = 454
Score = 89.3 bits (218), Expect = 5e-17
Identities = 87/236 (36%), Positives = 118/236 (49%), Gaps = 17/236 (7%)
Frame = +1
Query: 400 PLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELL--- 570
PLA P G A D R E V++D F A+VSHELRTP+ IRG E L
Sbjct: 199 PLAKDLP----GSAAVFHDVTELRRLEKVRKD--FVANVSHELRTPITAIRGYAETLQGG 252
Query: 571 -LTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKV-----AEQLL 732
L P M PK ++ S+L+ LL LSR E S +A+V A +
Sbjct: 253 ALNDPVMAPK---MVEIIHRQSERLSELVEDLLELSRLESREVSLKLARVTLADAAARAA 309
Query: 733 DSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYT-LEGRVTV----RV 897
D+ R + GGK + L DL A+ L NL+ NAVKYT GRV V
Sbjct: 310 DTVRPKAGGKGQVVSLHVPQDLLAVGDPRAVEQVLLNLLDNAVKYTPAGGRVDVYGEYEQ 369
Query: 898 LEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ---GGGIGLSIVSRLCDLYGWKVS 1068
V ++DTG G+ + +++F+R YR G S+ G G+GL+IV L +V
Sbjct: 370 GRCVVRVKDTGVGIEAKHQSRIFERFYR-VDKGRSRDMGGTGLGLAIVKHLLQAMDGEVK 428
Query: 1069 VQPGDSYGVIATL 1107
V+ + G T+
Sbjct: 429 VESEPNGGSTFTI 441
>gi|1705848|sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG
>gi|625685|pir||A49902 protein-histidine kinase (EC
2.7.3.-) ChvG - Agrobacterium tumefaciens >gi|304123
(L18860) ChvG [Agrobacterium tumefaciens]
Length = 690
Score = 88.2 bits (215), Expect = 1e-16
Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 27/324 (8%)
Frame = +1
Query: 85 LERPDWAALPNGNHNVIGLDNAGKLFAYYKLAVRKADDAWFFL-----AYDMTEAIRGER 249
L R D A G+ V+ + G+L + V++ L A D+ + + ER
Sbjct: 206 LSRSDECA-DGGSRRVVPVTEKGELIVSVAVPVQRFRAVLGVLLLSTQAGDIDKIVHAER 264
Query: 250 -QLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFP-- 420
+ R I+ LV LSLL+ +S + P+ L+ RG T + P F
Sbjct: 265 LAIMRVFGIATLVNIVLSLLL----SSTIATPLRRLSAARSGARGARTREE--IPDFSAR 318
Query: 421 DDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELL---LTKPEMD 591
DE+G L+ AL + ++ L + + F ADVSHEL+ PL +R A E L T+
Sbjct: 319 QDEIGNLSIALREMTTALYDRIDAIESFAADVSHELKNPLTSLRSAVETLPRAKTEESKQ 378
Query: 592 PKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIE 771
++ SD+ A L + R S V + L Q+ K+
Sbjct: 379 RLTEIIFHDVRRLDRLISDISDASRLDAELARADASPLDLDVLMKGLVDISRQISTKKKS 438
Query: 772 LILE--------DKHDLTVNAPESALSVALGNLIGNAVKYTLE--GRVTVRVLEK----A 909
+ ++ K VN + + + NLI NA + E GR+TVR+
Sbjct: 439 VAIDYVADRKAGAKTSFVVNGHDLRIGQIVTNLIENARSFVSEESGRITVRLSRHKDRCI 498
Query: 910 VEIQDTGPGLSEQDAAKLFQRGY--RGTHAGHSQGGGIGLSIVSRLCDLYG 1056
V+++D GPG+ +D ++F+R Y R G Q G+GLSI ++ + +G
Sbjct: 499 VQVEDNGPGIQAEDIDRIFERFYTDRPASEGFGQNSGLGLSISRQIAEAHG 549
>gi|6117973|gb|AAF03933.1|AF139908_3 (AF139908) LisK [Listeria
monocytogenes]
Length = 483
Score = 86.6 bits (211), Expect = 3e-16
Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 18/288 (6%)
Frame = +1
Query: 190 ADDAWFFLAY-DMTEAIRGERQLKRALYISVLVFSGLSLLI----GWWSASKVMKPVSDL 354
ADD + Y + + ++ L +++++ ++L I G+ A + P++ L
Sbjct: 151 ADDNTTVIGYAQVVNPLTSYNRMMDRLLVTMILLGAVALFISGMLGYLLAQNFLNPLTRL 210
Query: 355 AKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRT 534
A+ + R + DE+GEL +D +R+ ++ ++F D SHELRT
Sbjct: 211 ARTMNDIRKNGFQKRIETKTNSRDEIGELTVVFNDMMTRIETSFEQQKQFVEDASHELRT 270
Query: 535 PLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERGHGS---- 699
P+ ++ G +LL + DP E ++ L+ +L LSR E+ +
Sbjct: 271 PVQIMEGHLKLLTRWGKDDPAVLDESLNASLTELERMKKLVQEMLDLSRAEQISQTKELQ 330
Query: 700 -SNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE 876
++V EQ+ + L ED DL + L L ++ NAVKY+ +
Sbjct: 331 ITDVNATVEQVRRNFEVMYENFTFTL-KEDDTDLRALIQHNHLEQILIIIMDNAVKYSGD 389
Query: 877 G-RVTVRVLEKA----VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ--GGGIGLSIVS 1035
G V + V ++ ++++D G G+S+++ K+F R YR A + G G+GL+I
Sbjct: 390 GTEVDMHVYKEQKQIHIDVRDYGEGISQEEIDKIFNRFYRVDKARSREKGGNGLGLAIAK 449
Query: 1036 RLCDLY 1053
+L + Y
Sbjct: 450 QLVEGY 455
>gi|6166489|gb|AAF04854.1|AF197912_1 (AF197912) histidine protein
kinase homolog GacS [Azotobacter vinelandii]
Length = 905
Score = 86.2 bits (210), Expect = 5e-16
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 20/211 (9%)
Frame = +1
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
LD E + EF A++SHE+RTPL I G T LL K E+ P+ +
Sbjct: 258 LDMVRREALEASRIKSEFLANMSHEIRTPLNGIIGFTNLL-QKCELTPRQHDYLNTIQKS 316
Query: 631 EQQCSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD 795
D+I +L S+ E G H N+ ++ + L K +EL+ D
Sbjct: 317 ADSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRD 376
Query: 796 --LTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLS 942
L +N L L NLI NA+K+T EG + VR + + + + DTG GLS
Sbjct: 377 TPLALNGDPQRLRQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEFAQLRISVHDTGIGLS 436
Query: 943 EQDAAKLFQRGYRGTHAGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
++D LFQ + ++ Q GG GL +V RL + G ++ V PG+
Sbjct: 437 QEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGE 487
>gi|2500762|sp|Q44007|CZCS_ALCEU SENSOR PROTEIN CZCS
>gi|1403128|emb|CAA67087| (X98451) czcS [Ralstonia
eutropha]
Length = 475
Score = 85.8 bits (209), Expect = 6e-16
Identities = 79/310 (25%), Positives = 147/310 (46%), Gaps = 13/310 (4%)
Frame = +1
Query: 184 RKADDAWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKL 363
R A F+A + + + + L + V L+ L+G + ++P L K
Sbjct: 134 RDGTRATVFVAKSGEDRKQVTARFRTTLVLGTTVGVILTALVGAAITRRELEPAHVLIKQ 193
Query: 364 LRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLA 543
+ + + + P P EV ++A A + RL + Q+ F+AD++H+LRTPL
Sbjct: 194 INRISVERLSYRVDMPPKPT-EVRDIASAFNAMLQRLEDGYQKLSRFSADLAHDLRTPLN 252
Query: 544 VIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVA-KVA 720
+ G E+ L++ P+ Q+ + +I A+L L+R + S+NVA ++
Sbjct: 253 NLIGHAEVALSRDRTGPEYVALVEESLVEYQRLARMIDAMLFLARAD----SANVALELT 308
Query: 721 EQLLDSHRAQLG------GKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGR 882
E L++ +L + +++ D T+ A A+ N++ NAV++
Sbjct: 309 ELQLNAELRKLSAYFSVLAEERSVVIRVSGDATLVADAILFQRAINNVLSNAVRHAWPNS 368
Query: 883 VTVRVLEK----AVEIQDTGPGLSEQDAAKLFQRGYRGTHA--GHSQGGGIGLSIVSRLC 1044
+ V+ + ++I + G + E++ + +F R +RG A SQ G+GL+IV +
Sbjct: 369 MIDLVVRRDRHCCIDITNVGDPIPERELSLIFDRFFRGDRARSNSSQSTGLGLAIVLSIM 428
Query: 1045 DLYGWKVSVQPGDSYGVIATLRF 1113
+L+G S G TLRF
Sbjct: 429 ELHGGDASAVSGLDGKTRFTLRF 451
>gi|2564745 (AF027298) histidine kinase sensory protein ExoS
[Sinorhizobium meliloti]
Length = 577
Score = 84.3 bits (205), Expect = 2e-15
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 23/281 (8%)
Frame = +1
Query: 214 AYDMTEAIRGER-QLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDL-AKLLRTYRGQT 387
A D+ + + ER + RA ++ LV LSLL+ +S + P+ L A +R RG
Sbjct: 249 AGDIDKIVHAERLAIIRAFGVAALVNVILSLLL----SSTIANPLRRLSAAAIRVRRGGA 304
Query: 388 TNPKPLAPHFPD--DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGAT 561
+ + P F DE+G L+ AL + ++ L + + F ADVSHEL+ PL +R A
Sbjct: 305 KEREEI-PDFSSRQDEIGNLSVALREMTTALYDRIAAIENFAADVSHELKNPLTSLRSAV 363
Query: 562 ELL-LTKPEMDPK--XXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSS-NVAKVAEQL 729
E L L + E K ++ SD+ A L + R ++ K+ L
Sbjct: 364 ETLPLARNEESKKRLMDVIQHDVRRLDRLISDISDASRLDAELARADAKKVDLEKLLGDL 423
Query: 730 LDSHRAQLGGKRIELI--LEDKHD-----LTVNAPESALSVALGNLIGNAVKYTLE--GR 882
++ R G K+ L+ + D+ D V+ E + + NLI NA + E GR
Sbjct: 424 VEISRQIRGSKKPVLLDFVVDRKDNPRASFIVSGYELRIGQIITNLIENARSFVPEQNGR 483
Query: 883 VTVRV----LEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGH--SQGGGIGLSIVSRLC 1044
+ VR+ L V ++D GPG+ +D ++F+R Y G Q G+GLSI ++
Sbjct: 484 IVVRLTRSRLRCIVYVEDNGPGIQAEDIDRIFERFYTDRPEGEDFGQNSGLGLSISRQIA 543
Query: 1045 DLYG 1056
+ +G
Sbjct: 544 EAHG 547
>gi|1001334|dbj|BAA10821| (D64006) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 405
Score = 84.3 bits (205), Expect = 2e-15
Identities = 89/270 (32%), Positives = 140/270 (50%), Gaps = 33/270 (12%)
Frame = +1
Query: 262 ALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTY-RGQTTNPKPLAPHFPDD--EV 432
A+ GLS L +A ++M+P+ L + G + P P D E+
Sbjct: 107 AIIFGASAAGGLSFL----AADRIMQPLDRLKLATKNLAEGDLQSRMP-----PSDIPEL 157
Query: 433 GELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT-----KPEMDPK 597
EL ++ + + L V Q+ RE +D++HELR+PL V+RG E L PE+ +
Sbjct: 158 EELGQSFNRMADSLENVEQQRRELVSDLTHELRSPLTVVRGYLEQLAEGTIAGDPELYQR 217
Query: 598 XXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH--RAQLGGKRIE 771
++ L L LS+ E G+ S + Q LD + A+L + +
Sbjct: 218 LVGET-------RRLERLTVDLQELSKVEAGYLS-----IQRQPLDLYPLLAKLQQRFAD 265
Query: 772 LILEDKHDL---------TVNAPESALSVALGNLIGNAVKYTLEGRVTV--------RVL 900
+LED +L TV A L NLIGNAV+YT G +T+ + +
Sbjct: 266 QLLEDGPELILAVQPPLPTVLADPDRAEQILVNLIGNAVRYTPSGAITIDAYLCTNRKDM 325
Query: 901 EKA----VEIQDTGPGLSEQDAAKLFQRGYRG--THAGHSQGGGIGLSIVSRLCDLYGWK 1062
EK V + DTG G++E D +F+R +R + + +S G G+GL+I RL +L G
Sbjct: 326 EKENLLWVTVTDTGIGIAEGDLPYVFERFWRADKSRSRYSGGTGLGLAIAKRLVELQGGS 385
Query: 1063 VSV 1071
++V
Sbjct: 386 LTV 388
>gi|2440113|emb|CAB16700| (Z99494) two-component sensor [Mycobacterium
leprae]
Length = 446
Score = 83.5 bits (203), Expect = 3e-15
Identities = 76/282 (26%), Positives = 132/282 (45%), Gaps = 17/282 (6%)
Frame = +1
Query: 265 LYISVLVFSGLSL----LIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEV 432
L+ VL+ G ++ + W A+ ++P LA+ R+ P+ + H + V
Sbjct: 146 LHRRVLLICGFAIAAAAVFAWLLAAFAVRPFKQLAQQTRSVDAGGEAPR-VEVHGATEAV 204
Query: 433 GELARALD-------DYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMD 591
E+A A+ + +R E + R+F A SHELRTPL +R E+L T D
Sbjct: 205 -EIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRTNLEVLATLDLAD 263
Query: 592 PKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLD--SHRAQLGGKR 765
+ + + + AL L++ E +V +LLD +H A
Sbjct: 264 DQRKEVLGDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITELLDRAAHDATRSYPE 323
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGP 933
+++ L + + L +A+ N + NAVK+ RV + + + + D G
Sbjct: 324 LKVSLVPSPTCIIVGLPAGLRLAVDNAVANAVKHGGATRVQLSAVSSRAGVEIAVDDNGS 383
Query: 934 GLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
G+ E + +F+R RG+ A HS G G+GL++V++ L+G S++ G LR
Sbjct: 384 GVPEDERQVVFERFSRGSTASHS-GSGLGLALVAQQAQLHGGTASLETSPLGGARLLLR 441
>gi|2632046|emb|CAA05605| (AJ002571) YkoH [Bacillus subtilis]
>gi|2633680|emb|CAB13183| (Z99110) similar to
two-component sensor histidine kinase [YkoG] [Bacillus
subtilis]
Length = 454
Score = 83.5 bits (203), Expect = 3e-15
Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 14/321 (4%)
Frame = +1
Query: 151 GKLFAYYKLAVRKADDAWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSAS- 327
GKLFA + V D ++ + E + + L I ++ S + +++ S
Sbjct: 116 GKLFAEAAVPVIWTDGQ--VVSLQLVERLENTEESLFLLKIILIAASAAVCIASFFAGSL 173
Query: 328 ---KVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDR 498
+++ P+ L ++ + +DE+ ++ ++ + L E + +
Sbjct: 174 LARRIINPIRRLMITMKDIQRDKEFKTISLEGQSNDELYQMGLTFNEMAMMLKEHYDKQQ 233
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ-QCSDLIGALLLLS 675
+F D SHEL+TPL +I + L+ P+ +E L LL L+
Sbjct: 234 QFVQDASHELKTPLTIIESYSSLMKRWGAKKPEVLEESIEAIHSEAVHMKKLTNQLLALA 293
Query: 676 RNERG----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGN 843
++ +G + ++ K A ++ + Q +R L+ DK L V A E + L
Sbjct: 294 KSHQGLEVDLKTIDLIKAARAVMQT--LQSVYQRDILLETDKESLLVKADEERIKQLLTI 351
Query: 844 LIGNAVKYT---LEGRVTVRVLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ--G 1008
L+ NA+KY+ +E R + ++D G G+ E+ LF+R YR A + + G
Sbjct: 352 LLDNAIKYSEKPIEMSAGTRNGRPFLSVRDEGIGIPEEHIPHLFERFYRADEARNRKTGG 411
Query: 1009 GGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
G+GLSI ++ D +G ++SV+ G T++F
Sbjct: 412 TGLGLSIAKQIADEHGIELSVKSKPGQGTAVTMQF 446
>gi|1575578 (U67196) histidine protein kinase [Thermotoga maritima]
>gi|4982228|gb|AAD36721.1|AE001807_12 (AE001807) sensor
histidine kinase HpkA [Thermotoga maritima]
Length = 412
Score = 83.5 bits (203), Expect = 3e-15
Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 18/201 (8%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQC--SDLIGALLL 669
REF A VSHELRTPL I G E LL + +++ K E+ + LI LL
Sbjct: 187 REFIATVSHELRTPLTSIHGYAETLL-EDDLENKELVKRFLKIIEEESARMTRLINDLLD 245
Query: 670 LSRNERGHGSS-----NVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVA 834
L + E + ++ +V E + + ++LI+E + D+ V + L
Sbjct: 246 LEKIEESEANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECE-DVVVRGNKERLIQM 304
Query: 835 LGNLIGNAVKYTL-----EGRVTVRVLEK----AVEIQDTGPGLSEQDAAKLFQRGYRGT 987
L NL+ NAVKYT E +V VR + VE++DTGPG+ ++ +++F++ YR
Sbjct: 305 LLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKEAQSRIFEKFYRVD 364
Query: 988 HAGHSQ--GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
A + G G+GL+IV + D +G K+ V+ + G +
Sbjct: 365 KARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTL 403
>gi|2507376|sp|P30847|BAES_ECOLI SENSOR PROTEIN BAES
>gi|1736787|dbj|BAA15934| (D90846) Sensor protein BaeS
(EC 2.7.3.-). [Escherichia coli]
>gi|1736799|dbj|BAA15945| (D90847) Sensor protein BaeS
(EC 2.7.3.-). [Escherichia coli] >gi|1788393 (AE000297)
sensor protein (for BaeR) [Escherichia coli]
Length = 467
Score = 83.1 bits (202), Expect = 4e-15
Identities = 81/291 (27%), Positives = 139/291 (46%), Gaps = 15/291 (5%)
Frame = +1
Query: 235 IRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQ--TTNPKPLA 408
I ++Q ++ ++ V + + L+ L + A ++ PV L TT P +
Sbjct: 157 INFDKQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTS 216
Query: 409 PHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEM 588
+DE+G+LA+ + +S L + Q R+F AD+SHELRTPLAV+RG E + +
Sbjct: 217 ----EDELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAI---QDG 269
Query: 589 DPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERGHGSSNVAKV-----AEQLLDSHRAQ 750
K AE + L+ L LS ++ G + A V E + R +
Sbjct: 270 VRKFTPETVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRER 329
Query: 751 LGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG---RVTVRVLEKAVEI- 918
+ ++L +TV L NL+ N+++YT G +++ +K V +
Sbjct: 330 FASRGLKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLQISAGQRDKTVRLT 389
Query: 919 -QDTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSY 1089
D+ PG+S+ KLF+R YR G+ S G G+GL+I + + + ++
Sbjct: 390 FADSAPGVSDDQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFG 449
Query: 1090 GVIATL 1107
GV T+
Sbjct: 450 GVSITV 455
>gi|728989|sp|P40330|BVGS_BORPA VIRULENCE SENSOR PROTEIN BVGS
PRECURSOR >gi|95511|pir||S17946 virulence protein bvgS -
Bordetella parapertussis >gi|39729|emb|CAA37124.1|
(X52948) bvgS product, put. sensor protein [Bordetella
parapertussis]
Length = 1238
Score = 82.7 bits (201), Expect = 5e-15
Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 20/227 (8%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E EL R L D + F A +SHE+RTP+ I G EL L +P
Sbjct: 698 ERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDRQ 757
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQL-----GGKRIE 771
+ + +LIG +L +++ E G + A + L +L K IE
Sbjct: 758 SIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLARQKGIE 817
Query: 772 LILEDKHDLT----VNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK--------AVE 915
L+L K D+ V + L NL+GNA+K+T EG+V + V +
Sbjct: 818 LVL--KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAHVQFS 875
Query: 916 IQDTGPGLSEQDAAKLFQRGYR---GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDS 1086
+ DTG G+SE D +LF+ + AG + G G+GLSI RL +L G + ++
Sbjct: 876 VSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPG 935
Query: 1087 YGVIATL 1107
G ++
Sbjct: 936 VGTTVSV 942
>gi|728990|sp|P16575|BVGS_BORPE VIRULENCE SENSOR PROTEIN BVGS
PRECURSOR >gi|78221|pir||A40185 virulence protein bvgC -
Bordetella pertussis >gi|144040 (M25401) BvgS protein
[Bordetella pertussis]
Length = 1238
Score = 82.3 bits (200), Expect = 7e-15
Identities = 70/227 (30%), Positives = 109/227 (47%), Gaps = 20/227 (8%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E EL R L D + F A +SHE+RTP+ I G EL L +P
Sbjct: 698 ERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQEPDRQ 757
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQL-----GGKRIE 771
+ + +LIG +L +++ E G + A ++L ++ K IE
Sbjct: 758 SIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGIE 817
Query: 772 LILEDKHDLT----VNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK--------AVE 915
L+L K D+ V + L NL+GNA+K+T EG+V + V +
Sbjct: 818 LVL--KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAAHVQFS 875
Query: 916 IQDTGPGLSEQDAAKLFQRGYR---GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDS 1086
+ DTG G+SE D +LF+ + AG + G G+GLSI RL +L G + ++
Sbjct: 876 VSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPG 935
Query: 1087 YGVIATL 1107
G ++
Sbjct: 936 VGTTVSV 942
>gi|115160|sp|P26762|BVGS_BORBR VIRULENCE SENSOR PROTEIN BVGS
PRECURSOR >gi|95502|pir||S17944 virulence protein bvgS -
Bordetella bronchiseptica >gi|39354|emb|CAA41252.1|
(X58355) bvgS product, put. sensor protein [Bordetella
bronchiseptica]
Length = 1238
Score = 81.5 bits (198), Expect = 1e-14
Identities = 70/227 (30%), Positives = 108/227 (46%), Gaps = 20/227 (8%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E EL R L D + F A +SHE+RTP+ I G EL L +P
Sbjct: 698 ERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDRQ 757
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQL-----GGKRIE 771
+ + +LIG +L +++ E G + A + L ++ K IE
Sbjct: 758 SIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLARQKGIE 817
Query: 772 LILEDKHDLT----VNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK--------AVE 915
L+L K D+ V + L NL+GNA+K+T EG+V + V +
Sbjct: 818 LVL--KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAHVQFS 875
Query: 916 IQDTGPGLSEQDAAKLFQRGYR---GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDS 1086
+ DTG G+SE D +LF+ + AG + G G+GLSI RL +L G + ++
Sbjct: 876 VSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPG 935
Query: 1087 YGVIATL 1107
G ++
Sbjct: 936 VGTTVSV 942
>gi|543778|sp|Q04943|AFQ2_STRCO SENSOR PROTEIN AFSQ2
>gi|322269|pir||B45270 sensory histidine protein kinase
homolog AfsQ2 - Streptomyces coelicolor
>gi|216984|dbj|BAA01503| (D10654) AfsQ2 [Streptomyces
coelicolor]
Length = 535
Score = 81.5 bits (198), Expect = 1e-14
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVV-------QRDREFNADVSHELRTPLAVIRGATELLLTKP 582
DE+ +L+R + + L + V Q R F AD+SHELRTPL + TE+L +
Sbjct: 255 DELADLSRTFNSAAENLEKRVADMAGREQASRRFVADMSHELRTPLTALTAVTEVLEEEL 314
Query: 583 E-----------MDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGS--SNVAKVAE 723
E DP ++ +DL+ L+ ++R + G + VA+
Sbjct: 315 EYAGEGEGEGGSFDPMVEPAVRLVVSETRRLNDLVENLMEVTRFDAGTARLVLDDVDVAD 374
Query: 724 QLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVL- 900
Q+ A+ ++ L+ + + L V L NLIGNA+K+ G VRV
Sbjct: 375 QITACIDARAWLDAVD--LDAERGVHARLDPRRLDVILANLIGNALKH---GGSPVRVSV 429
Query: 901 -----EKAVEIQDTGPGLSEQDAAKLFQRGYRGTHA-GHSQGGGIGLSIVSRLCDLYGWK 1062
E + ++D GPG+ E +F R Y+ + + S+G G+GLSI ++G +
Sbjct: 430 ARADHEIVIRVRDNGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGE 489
Query: 1063 VSVQPGDSYGVIATLR 1110
++ + G + TLR
Sbjct: 490 ITAENAPEGGAVFTLR 505
>gi|4336932|gb|AAD18016.1| (AF114442) histidine kinase; HepK [Nostoc
punctiforme]
Length = 574
Score = 80.4 bits (195), Expect = 3e-14
Identities = 83/280 (29%), Positives = 148/280 (52%), Gaps = 40/280 (14%)
Frame = +1
Query: 271 ISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARA 450
IS+LV ++ ++ W ++ + +PV + ++ + N AP +DE+G LA++
Sbjct: 251 ISMLVSVAIAAIVAWRTSRAIAEPVITVTQVAEQV-ARKHNFDLRAPVTTEDEIGLLAKS 309
Query: 451 LDDYSSRLTE---VVQRDRE-----------FNADVSHELRTPLAVIRGATELL---LTK 579
L+ R++E +Q+ +E F A+VSHELRTPL + G ++LL T
Sbjct: 310 LNRLIERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLEDDATD 369
Query: 580 PEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHR 744
+ A + LI +L LS+ E G + +A + ++ + +
Sbjct: 370 LGLSADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIATLINNVVLTVK 429
Query: 745 AQLGGKRIELILE---DKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE 915
+ ++ +LE D+ T+ A ++ + L NL+ NA K+T G+VT+ V + E
Sbjct: 430 PAI--EKNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFTTNGKVTLTVKREKEE 487
Query: 916 IQ-------------DTGPGLSEQDAAKLFQRGYRG-THAGHSQGG-GIGLSIVSRLCDL 1050
++ DTG G+S + +LFQ +G T GG G+GL+I C +
Sbjct: 488 LRLDAPLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQM 547
Query: 1051 YGWKVSVQPGDSYGVIATLR 1110
G ++ V+ G T+R
Sbjct: 548 MGGEIIVKSQPGLGSTFTIR 567
>gi|2623815 (AF030352) two component sensor [Pseudomonas aeruginosa]
Length = 925
Score = 80.4 bits (195), Expect = 3e-14
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + + +I +L S+
Sbjct: 286 EFLANMSHEIRTPLNGILGFTNLL-QKSELSPRQQDYLTTIQKSAESLLGIINEILDFSK 344
Query: 679 NERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G + N+ + + L K++EL+ D + + L L
Sbjct: 345 IEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQLQGDPQRLKQIL 404
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NL+GNA+K+T G V VR + + + +QDTG GLSE+D LF+ + +
Sbjct: 405 TNLVGNAIKFTQGGTVAVRAMLEDESDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADN 464
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 465 SLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGE 499
>gi|4455704|emb|CAB36689.1| (AL035500) putative two-component system
sensor [Mycobacterium leprae]
Length = 519
Score = 80.0 bits (194), Expect = 3e-14
Identities = 80/300 (26%), Positives = 146/300 (48%), Gaps = 17/300 (5%)
Frame = +1
Query: 175 LAVRKADDAWFFLAYDM--TEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVS 348
LA+ +D+ ++ + TEA+ +L+ L I + ++ + G ++PV
Sbjct: 136 LAIHLPNDSSLLISKSLRPTEAVM--TKLRWVLLIVGSLGVAVAAVAGGMVTRAGLRPVG 193
Query: 349 DLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHEL 528
L + +T + +P+ P F DE+ L A + L E +R D HEL
Sbjct: 194 RLTEAAERV-ARTDDLRPI-PVFGSDELARLTEAFNLMLRALAESRERQARLVTDAGHEL 251
Query: 529 RTPLAVIRGATELLLTK-----PEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERG 690
RTPL +R ELL+ P + + A+ ++ S L+G L+ L+R++ G
Sbjct: 252 RTPLTSLRTNVELLIASMAPEAPRLPDQEMADLRADVLAQIEELSTLVGDLVDLTRDDAG 311
Query: 691 ---HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAV 861
H ++++V + L+ R + ++ + + LS A+ NL+ NA
Sbjct: 312 QVVHEPIDMSEVLYRSLERVRRRRNDIHFDV---QAIGWQIYGDAAGLSRAVLNLMDNAA 368
Query: 862 KYTLEGR---VTVRVLEKA---VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGL 1023
K++ G VT+R + + + + D GPG+ Q+ +F+R YR T A G G+GL
Sbjct: 369 KWSPSGGRVVVTMRQFDPSHVELVVSDYGPGIPPQERRLVFERFYRSTTARSLPGSGLGL 428
Query: 1024 SIVSRLCDLYGWKVSVQ 1074
+IV ++ +G + V+
Sbjct: 429 AIVKQVVINHGGLLRVE 445
>gi|130130|sp|P23545|PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS SENSOR
PROTEIN PHOR >gi|80360|pir||A27650 regulatory protein
phoR - Bacillus subtilis >gi|143331 (M23549) alkaline
phosphatase regulatory protein [Bacillus subtilis]
>gi|2293271 (AF008220) signal transduction protein kinase
[Bacillus subtilis] >gi|2635375|emb|CAB14870| (Z99118)
two-component sensor histidine kinase [Bacillus subtilis]
Length = 579
Score = 80.0 bits (194), Expect = 3e-14
Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 15/230 (6%)
Frame = +1
Query: 418 PDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPK 597
PDDE + D + ++ Q ++F A+VSHEL+TP+ I+G TE LL D +
Sbjct: 327 PDDEWKGIVLVFHDMTET-KKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKE 385
Query: 598 XXXXXXXXXXAE-QQCSDLIGALLLLSRNERGHGSSNV-----AKVAEQL--LDSHRAQL 753
E ++ L+ LL LS+ E+ + + ++ AK+ ++ L H+A
Sbjct: 386 ALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADE 445
Query: 754 GGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG---RVTVRVLEK--AVEI 918
G + L + P V L NL+ NA+ YT EG + V+ EK +E+
Sbjct: 446 KGISLHLNVPKDPQYVSGDPYRLKQVFL-NLVNNALTYTPEGGSVAINVKPREKDIQIEV 504
Query: 919 QDTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
D+G G+ +++ ++F+R YR + +S G G+GL+IV L + + K+ V G
Sbjct: 505 ADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRG 564
Query: 1093 VIATL 1107
+ T+
Sbjct: 565 TVFTV 569
>gi|6045172|dbj|BAA85310.1| (AB033420) ORFS [Pseudomonas syringae]
Length = 487
Score = 79.6 bits (193), Expect = 4e-14
Identities = 75/274 (27%), Positives = 132/274 (47%), Gaps = 17/274 (6%)
Frame = +1
Query: 199 AWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYR 378
AW L D+T + L+R + +L + LS +GW A ++PV+ + + +
Sbjct: 141 AWLVL--DVTTHMHFFAMLERWFWGVLLASTALSGALGWLVAKNGLRPVARVTQTAASMS 198
Query: 379 GQTTNPK-PLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRG 555
+ + PL P DE+ EL A + RL + R F+AD++HELRTP++ +R
Sbjct: 199 AGSLKERIPLGP--VPDELRELITAFNSMLGRLDDSFVRLSNFSADIAHELRTPISNLRT 256
Query: 556 ATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLD 735
TE++L K + S +I +L L++++ G V + E L
Sbjct: 257 HTEVILAKKRAPEVYEENLSSNLEELNRLSGIIDGMLFLAKSDNG---LIVPEAVELDLR 313
Query: 736 SHRAQLGGKRIELILEDK-------HDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVR 894
+ ++L G E + EDK + ++ A + + NL+ NA++YT G T++
Sbjct: 314 TVISKLFG-YYEFLAEDKGIQLQASGNASIFADSVMIDRVVSNLLSNALRYTPSGE-TIK 371
Query: 895 VL------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ---GGGIG 1020
V + +++ GP ++ Q ++F R YR A + G G G
Sbjct: 372 VSIHDHGGRVELRLENPGPEIAPQHLDRIFDRFYRVDPAARRRRECGAGAG 422
>gi|478426|pir||JX0282 sensory kinase BaeS protein - Escherichia coli
>gi|216532|dbj|BAA03140| (D14054) BaeS [Escherichia coli]
Length = 466
Score = 79.6 bits (193), Expect = 4e-14
Identities = 80/291 (27%), Positives = 137/291 (46%), Gaps = 14/291 (4%)
Frame = +1
Query: 235 IRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQ--TTNPKPLA 408
I ++Q ++ ++ V + + L+ L + A ++ PV L TT P +
Sbjct: 157 INFDKQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTS 216
Query: 409 PHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEM 588
+DE+G+LA+ + +S L + Q R+F AD+SHELRTPLAV+RG E + +
Sbjct: 217 ----EDELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAI---QDG 269
Query: 589 DPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERGHGSSNVAKV-----AEQLLDSHRAQ 750
K AE + L+ L LS ++ G + A V E + R +
Sbjct: 270 VRKFTPETVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRER 329
Query: 751 LGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG---RVTVRVLEKAVEI- 918
+ ++L +TV L NL+ N+++YT G +++ +K V +
Sbjct: 330 FASRGLKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLQISAGQRDKTVRLT 389
Query: 919 -QDTGPGLSEQDAAKLFQRGYR-GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
D+ PG+S+ KLF+R YR A G G+GL+I + + + ++ G
Sbjct: 390 FADSAPGVSDDQLQKLFERFYRTEVPATVPAGSGLGLAICLNIVEAHNGRIIAAHSPFGG 449
Query: 1093 VIATL 1107
V T+
Sbjct: 450 VSITV 454
>gi|1731396|sp|Q10560|Y902_MYCTU PROBABLE SENSOR-LIKE HISTIDINE KINASE
RV0902C >gi|1314042|emb|CAA97377| (Z73101) hypothetical
protein Rv0902c [Mycobacterium tuberculosis]
Length = 446
Score = 79.2 bits (192), Expect = 6e-14
Identities = 79/298 (26%), Positives = 132/298 (43%), Gaps = 13/298 (4%)
Frame = +1
Query: 217 YDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNP 396
YD T A L R + + G + + W A+ ++P LA+ R+ P
Sbjct: 136 YDATVA--ETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDEAP 193
Query: 397 KPLAPHFPDDEVGELARALD-------DYSSRLTEVVQRDREFNADVSHELRTPLAVIRG 555
+ + H + + E+A A+ + +R E + R+F A SHELRTPL +R
Sbjct: 194 R-VEVHGASEAI-EIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRT 251
Query: 556 ATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLD 735
E+L T D + + + + AL L++ E +V LLD
Sbjct: 252 NLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDLLD 311
Query: 736 --SHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK- 906
+H A +++ L + + L +A+ N I NAVK+ V + +
Sbjct: 312 RAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR 371
Query: 907 ---AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQP 1077
+ I D G G+ E + +F+R RG+ A HS G G+GL++V++ L+G S++
Sbjct: 372 AGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHS-GSGLGLALVAQQAQLHGGTASLEN 430
Query: 1078 GDSYGVIATLR 1110
G LR
Sbjct: 431 SPLGGARLVLR 441
>gi|3599372 (AF082668) CsrS [Streptococcus pyogenes]
Length = 500
Score = 79.2 bits (192), Expect = 6e-14
Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 15/270 (5%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELA 444
L + L + L+ LI + + +KP+ +L +++R N + DE+ EL+
Sbjct: 195 LLVVELFGTSLAYLIILITTRRFLKPLHNLHEVMRNISENPNNLNLRSDISSGDEIEELS 254
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT--KPEMDPKXXXXXXX 618
D+ +L + F +DVSHELRTP+A+I+G LL K + D
Sbjct: 255 VIFDNMLDKLETHTKLQSRFISDVSHELRTPVAIIKGHIGLLQRWGKDDSDILEESLTAT 314
Query: 619 XXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELIL--EDKH 792
A++ + L ++ G N V E +++ R + I + ++
Sbjct: 315 AHEADRMAIMINDMLDMIRVQGSFEGHQNDMTVLEDSIETVVGNFRVLREDFIFTWQSEN 374
Query: 793 DLTV-NAPESALSVALGNLIGNAVKYT-LEGRVTVRV-----LEKAVEIQDTGPGLSEQD 951
T+ ++ AL LI NAVKY+ E ++ + + E V +QD G G+S++D
Sbjct: 375 PKTIARIYKNHFEQALMILIDNAVKYSRKEKKIAINLSVTGKQEAIVRVQDKGEGISKED 434
Query: 952 AAKLFQRGYR----GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+F+R YR G GIGLSI+ ++ D Y ++ V+
Sbjct: 435 IEHIFERFYRTDKSRNRTSTQAGLGIGLSILKQIVDGYHLQMKVE 479
>gi|6460878|gb|AAF12582.1|AE001826_51 (AE001826) sensor histidine
kinase/response regulator [Deinococcus radiodurans]
Length = 577
Score = 79.2 bits (192), Expect = 6e-14
Identities = 67/214 (31%), Positives = 105/214 (48%), Gaps = 14/214 (6%)
Frame = +1
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPE--MDPKXXXXXXXXX 624
L++ + RL E F + +SHELRTPL + G +L + + ++P+
Sbjct: 201 LEEKAERLREANGLKTTFLSYMSHELRTPLHSMLGLARILSGQLDGPLNPEQLKQVQLLQ 260
Query: 625 XAEQQCSDLIGALLLLSRNERGHGSSNVAKV-AEQLLDSHRAQ----LGGKRIELILEDK 789
A +++ LL L++ E G +V +L + RA L + LI ED
Sbjct: 261 GAAGDLLEMVNGLLDLAKMEAGKTDVDVTTFEVRELFGTLRALFLPLLDNPAVNLIFEDA 320
Query: 790 HDLT-VNAPESALSVALGNLIGNAVKYTLEG--RVTVRVLEKA----VEIQDTGPGLSEQ 948
+ + + L N I NA+K+T G RVT ++L +QDTG GLS++
Sbjct: 321 AGFPPLTTDQRKVEQVLRNFIANALKFTAAGEVRVTAQLLPSGDRVRFTVQDTGIGLSDE 380
Query: 949 DAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
+ A+LFQ + G G G+GLSI + +L G +V VQ G
Sbjct: 381 EQAQLFQDFSQVGRPGRPAGTGLGLSIARKFTELLGGRVGVQSAPGAG 428
>gi|2916943|emb|CAA17581| (AL021999) hypothetical protein Rv0982
[Mycobacterium tuberculosis]
Length = 504
Score = 79.2 bits (192), Expect = 6e-14
Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 19/306 (6%)
Frame = +1
Query: 175 LAVRKADDAWFFLAYDM--TEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVS 348
LA+R + + ++ + TEA+ + L+ L I + ++ + G ++PV
Sbjct: 136 LAIRLTNGSSLLISKSLKPTEAVMNK--LRWVLLIVGGIGVAVAAVAGGMVTRAGLRPVG 193
Query: 349 DLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHEL 528
L + +T + +P+ P F DE+ L A + L E +R D HEL
Sbjct: 194 RLTEAAERV-ARTDDLRPI-PVFGSDELARLTEAFNLMLRALAESRERQARLVTDAGHEL 251
Query: 529 RTPLAVIRGATELLLTK-----PEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERG 690
RTPL +R ELL+ P + + A+ ++ S L+G L+ LSR + G
Sbjct: 252 RTPLTSLRTNVELLMASMAPGAPRLPKQEMVDLRADVLAQIEELSTLVGDLVDLSRGDAG 311
Query: 691 ---HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDL--TVNAPESALSVALGNLIGN 855
H ++A V ++ L+ R +R IL D + V + LS NL+ N
Sbjct: 312 EVVHEPVDMADVVDRSLERVR-----RRRNDILFDVEVIGWQVYGDTAGLSRMALNLMDN 366
Query: 856 AVKYTLEG-RVTVRVLE-----KAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGI 1017
A K++ G V VR+ + + + D GPG+ Q+ +F+R YR A G G+
Sbjct: 367 AAKWSPPGGHVGVRLSQLDASHAELVVSDRGPGIPVQERRLVFERFYRSASARALPGSGL 426
Query: 1018 GLSIVSRLCDLYGWKVSVQPGDSYG 1092
GL+IV ++ +G + ++ D G
Sbjct: 427 GLAIVKQVVLNHGGLLRIEDTDPGG 451
>gi|281611|pir||B41863 two-component regulatory protein lemA -
Pseudomonas syringae
Length = 929
Score = 78.8 bits (191), Expect = 8e-14
Identities = 65/195 (33%), Positives = 99/195 (50%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 299 EFLANMSHEIRTPLNGILGFTHLL-QKSELTPRQFDYLGTIEKSADNLLSIINEILDFSK 357
Query: 679 NERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G + N+ + + L K++EL+ D L ++ L L
Sbjct: 358 IEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQIL 417
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NL+ NA+K+T EG + R + + + +QDTG GLS QD LFQ + +
Sbjct: 418 TNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADN 477
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 478 SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE 512
>gi|3913941|sp|O31396|IRLS_BURPS SENSOR PROTEIN IRLS >gi|2245589
(AF005358) IrlS [Burkholderia pseudomallei]
Length = 464
Score = 78.8 bits (191), Expect = 8e-14
Identities = 70/273 (25%), Positives = 134/273 (48%), Gaps = 17/273 (6%)
Frame = +1
Query: 238 RGERQLKRALYISVLVFSGLSLLIGWWSASKV-MKPVSDLAKLLRTYRGQTTNPKPLAPH 414
+ + L RA +V+V L++++ A + M +S L +L+ R + + LA
Sbjct: 155 KNDHALLRAYAYTVVVIEVLAVVLTAALAYGIAMLGLSPLRRLVA--RAEQMSSSRLAQP 212
Query: 415 FPD----DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKP 582
P+ E+ E+ A + RL E R +F+++++H++RTPL + ++ L+KP
Sbjct: 213 LPELDTSGELKEMEHAFNAMLKRLDESFVRLSQFSSNLAHDMRTPLTNLLAEAQVALSKP 272
Query: 583 EMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHG-----SSNVAKVAEQLLDSHRA 747
+ Q+ S +I +L L+R++ + + A AE++ +
Sbjct: 273 RTADEYRDVIESSIDEYQRLSRMIEDMLFLARSDNAQSHLAIRTLDAAAQAERVAGYYEP 332
Query: 748 QLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVLEKA----V 912
+ +++ K + V A AL NLI NA+ + G +T+ + A +
Sbjct: 333 MAEDAEVSIVVRGKAE--VRADALLYHRALSNLISNALNHAPRGSTITIECAQAADAATI 390
Query: 913 EIQDTGPGLSEQDAAKLFQRGYRGTHAGH--SQGGGIGLSIVSRLCDLYG 1056
+ DTG G+ ++F+R YR A H + G G+GL+IV + + +G
Sbjct: 391 SVSDTGRGIEAPHRERIFERFYRVDPARHNSASGTGLGLAIVRSIMENHG 440
>gi|5764627|gb|AAD51347.1|AF173226_4 (AF173226) SmeS [Stenotrophomonas
maltophilia]
Length = 467
Score = 78.8 bits (191), Expect = 8e-14
Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 13/257 (5%)
Frame = +1
Query: 259 RALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGE 438
RA ++ + +++L+ W + + + ++ LA T+R + DDE+
Sbjct: 170 RAWWVIGIALLLVTVLLAWLVSRALRQRLAKLAAA--THRLAAGDYATRIERTSDDELDA 227
Query: 439 LARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXX 618
L + + L + + R F AD+SHELRTPLAV+R EL + + P
Sbjct: 228 LVNDFNRMAQALDDTERNRRAFIADISHELRTPLAVVR--AELEAIEDGIRPLDRANLVG 285
Query: 619 XXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIE-----LILE 783
+Q LI L LS + G + A + L+ R++L G R+ L LE
Sbjct: 286 LQGEIRQLGKLIDDLHDLSMTQSGGLAYRFAPL--DLVALLRSELNGMRVRFANAGLALE 343
Query: 784 D---KHDLTVNAPESALSVALGNLIGNAVKYT-LEGRVTVRVLEKAVEIQ----DTGPGL 939
+ L V+ E L L NL+ NA++YT GRV V+ +Q DT PG+
Sbjct: 344 EDLPATPLQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVVEDTAPGV 403
Query: 940 SEQDAAKLFQRGYRGTHAGHSQGGGIGLSI 1029
A +F+R YR + + GG GL +
Sbjct: 404 PPDKCALVFERFYRVESSRNRASGGSGLGL 433
>gi|1346440|sp|P48027|GACS_PSESY SENSOR PROTEIN GACS >gi|151329
(M80477) regulatory protein [Pseudomonas syringae]
Length = 907
Score = 78.8 bits (191), Expect = 8e-14
Identities = 65/195 (33%), Positives = 99/195 (50%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 277 EFLANMSHEIRTPLNGILGFTHLL-QKSELTPRQFDYLGTIEKSADNLLSIINEILDFSK 335
Query: 679 NERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G + N+ + + L K++EL+ D L ++ L L
Sbjct: 336 IEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQIL 395
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NL+ NA+K+T EG + R + + + +QDTG GLS QD LFQ + +
Sbjct: 396 TNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADN 455
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 456 SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE 490
>gi|2439990 (U95300) two component sensor regulator; ORF2 [Pseudomonas
tolaasii]
Length = 706
Score = 78.8 bits (191), Expect = 8e-14
Identities = 67/195 (34%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 83 EFLANMSHEIRTPLNGILGFTHLL-QKSELSPRHVDYLGTIEKSADNLLGIINEILDFSK 141
Query: 679 NERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G N+ + + L K++EL+ D L V L L
Sbjct: 142 IEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLAVVGDPLRLKQIL 201
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NLI NA+K+T EG + R + + + +QDTG GLS QD LFQ + +
Sbjct: 202 TNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDVRALFQAFSQADN 261
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 262 SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE 296
>gi|808104 (U25692) regulator of multiple functions [Pseudomonas
tolaasii]
Length = 909
Score = 78.4 bits (190), Expect = 1e-13
Identities = 67/195 (34%), Positives = 96/195 (48%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 287 EFLANMSHEIRTPLNGILGFTHLL-QKSELSPRHVDYLGTIEKSADNLLGIINEILDFSK 345
Query: 679 NERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G N+ + + L K++EL+ D L V L L
Sbjct: 346 IEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLAVVGDPLRLKQIL 405
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NLI NA+K+T EG + R + + + +QDTG GLS QD LFQ +
Sbjct: 406 TNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDVRALFQAFTEADN 465
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 466 SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE 500
>gi|1546076 (U68034) HepK [Anabaena sp.]
Length = 575
Score = 78.4 bits (190), Expect = 1e-13
Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 44/285 (15%)
Frame = +1
Query: 220 DMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPK 399
D+ EA ER + + +S+LV ++ ++ W ++ + +PV + ++ + N
Sbjct: 238 DVEEAKSVERLI---VMVSMLVSVAIAAIVAWRTSRAIAEPVIMVTQVAEQV-ARKPNFD 293
Query: 400 PLAPHFPDDEVGELARALDDYSSRLTEVVQRDRE--------------FNADVSHELRTP 537
AP +DE+G LA++L+ R++E + + F A+VSHELRTP
Sbjct: 294 LRAPVTTEDEIGLLAKSLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTP 353
Query: 538 LAVIRGATELL---LTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGS--- 699
L + G ++LL + + A + +LI +L LS+ E G +
Sbjct: 354 LNAVIGLSQLLKDDAADLNLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYP 413
Query: 700 ---------SNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIG 852
+NV + ++ + L I D+H T+ A ++ + L NL+
Sbjct: 414 EIFDVVTLINNVVVTVKPTIEKNNNLLE------IYCDEHLGTMYADQTRMRQVLLNLLS 467
Query: 853 NAVKYTLEGRVTVRVLEK-------------AVEIQDTGPGLSEQDAAKLFQRGYRG-TH 990
NA K+T GR+ + V + + + DTG G+S +LFQ +G T
Sbjct: 468 NAAKFTTNGRIKLTVRREKEDFLPEMPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTS 527
Query: 991 AGHSQGG-GIGLSIVSRLCDLYGWKVSVQ 1074
GG G+GL+I C + G ++ V+
Sbjct: 528 TTKKYGGTGLGLAISRHFCQMMGGEIIVK 556
>gi|6127221|gb|AAF04315.1| (AF150928) putative histidine kinase of
2-component regulatory system [Acinetobacter sp. ADP1]
Length = 435
Score = 78.4 bits (190), Expect = 1e-13
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 20/228 (8%)
Frame = +1
Query: 436 ELARALDDYS---SRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E+ A+D+ + R+ + + + F A+ +HELRTPL ++ T LLL P+
Sbjct: 189 EIRPAIDELNYLFKRIEQAKIQQQVFIANAAHELRTPLTALKLQTSLLLKTPQDSQIYDE 248
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGS--------SNVAKVAEQLLDSHRAQLGGK 762
+ ++ + L+ L+ L+ E +++ QLL + R K
Sbjct: 249 NLSDLSLSLKRMTHLVDQLMSLAHQEVHQDEPLRLLNLVAHIRLCVGQLLANARK----K 304
Query: 763 RIEL---ILEDKHDLTVNAPESALSVALGNLIGNAVKYT-LEGRVTVRVLEKA----VEI 918
IEL I +D ++++ A ++L L NLI NA+KY+ +G+V + + + V+I
Sbjct: 305 DIELQVNIEDDLEEISILATTNSLHSILINLIDNAIKYSPQQGQVIILLSQDTNAVYVDI 364
Query: 919 QDTGPGLSEQDAAKLFQRGYRGTHAGHSQ-GGGIGLSIVSRLCDLYGWKVSVQPGDSYGV 1095
D GPG+SEQ+ + +R R H G G+GLSIV D K+ +P G
Sbjct: 365 HDNGPGISEQEYDHVLERFVRLEHTQQQAIGSGLGLSIVQSALDSVDAKMQFKPSQLLGG 424
Query: 1096 IATLRFFK 1119
+ FK
Sbjct: 425 LCVHLTFK 432
>gi|6002655|gb|AAF00082.1|AF095713_2 (AF095713) transmembrane
histidine kinase MucS [Streptococcus pyogenes]
Length = 500
Score = 78.0 bits (189), Expect = 1e-13
Identities = 75/270 (27%), Positives = 130/270 (47%), Gaps = 15/270 (5%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELA 444
L + L + L+ LI + + +KP+ +L +++R N + DE+ EL+
Sbjct: 195 LLVVELFGTSLAYLIILITTRRFLKPLHNLHEVMRNISENPNNLHLRSDISSGDEIEELS 254
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXX 624
D+ +L + F +DVSHELRTP+A+I+G LL + D
Sbjct: 255 VIFDNMLDKLETHTKLQSRFISDVSHELRTPVAIIKGHIGLLQRWGKYDSDILEESLTAT 314
Query: 625 XAE-QQCSDLIGALLLLSRNERG-HGSSNVAKVAEQLLDSHRAQLGGKRIELIL--EDKH 792
E + + +I +L + R + G N V E +++ R + I + ++
Sbjct: 315 AHEADRMAIMINDMLDMVRVQGSFEGHQNDMTVLEDSIETVVGNFRVLREDFIFTWQSEN 374
Query: 793 DLTV-NAPESALSVALGNLIGNAVKYT-LEGRVTVRV-----LEKAVEIQDTGPGLSEQD 951
T+ ++ AL LI NAVKY+ E ++ + + E V +QD G G+S++D
Sbjct: 375 PKTIARIYKNHFEQALMILIDNAVKYSRKEKKIAINLSVTGKQEAIVRVQDKGEGISKED 434
Query: 952 AAKLFQRGYR----GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+F+R YR G GIGLSI+ ++ D Y ++ V+
Sbjct: 435 IEHIFERFYRTDKSRNRTSTQAGLGIGLSILKQIVDGYHLQMKVE 479
>gi|6273355|gb|AAF06332.1|AF192795_1 (AF192795) two component
histidine sensor kinase GacS [Pseudomonas chlororaphis]
Length = 917
Score = 78.0 bits (189), Expect = 1e-13
Identities = 69/207 (33%), Positives = 102/207 (48%), Gaps = 20/207 (9%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 287 EFLANMSHEIRTPLNGILGFTHLL-QKSELTPRQLDYLGTIEKSADSLLGIINEILDFSK 345
Query: 679 NERGHG-----SSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G N+ + + L K++EL+ D L++ L L
Sbjct: 346 IEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQIL 405
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NL+ NA+K+T EG + R + + + IQDTG GLS QD LFQ + +
Sbjct: 406 TNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGIGLSNQDVRALFQAFSQADN 465
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGDSYGVIATLRFFK 1119
+ Q GG GL +V RL + G ++ V PG+ +LR K
Sbjct: 466 SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLRLPK 512
>gi|1001827|dbj|BAA10708| (D64005) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 458
Score = 77.6 bits (188), Expect = 2e-13
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Frame = +1
Query: 487 QRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALL 666
Q+ ++F AD++HELRTP+ I+ E L + + S LI LL
Sbjct: 217 QQIQQFTADIAHELRTPITAIQATLETTLNAEPNAEETHSTLQTLKRQNYRLSHLIHDLL 276
Query: 667 LLSR------NERGHGSSNVAKVAEQLLD--SHRAQLGGKRIELILEDKHDLTVNAPESA 822
LLSR N + + E L + + A G + L+++ ++ V E
Sbjct: 277 LLSRMDLTTVNPTQFTLCCLNDLVEDLTEEFASLAIAAGVLLSAKLDNQANIWVRGEEEQ 336
Query: 823 LSVALGNLIGNAVKYT-LEGRVTVRV----LEKAVEIQDTGPGLSEQDAAKLFQRGYRGT 987
L +GNLI NA+ YT G VTV + + +++QDTG G++ ++ +++F R YR
Sbjct: 337 LYRLVGNLISNAIHYTPTGGEVTVMLETDKQQAIIKVQDTGIGIASENQSRVFDRFYRVD 396
Query: 988 HAGHSQ--GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
A Q G G+GL+I + + ++V+ G + T+R
Sbjct: 397 TARSRQRGGAGLGLAIAQAIAVKHQGVLTVESELGQGSLFTIR 439
>gi|4981813|gb|AAD36332.1|AE001781_3 (AE001781) sensor histidine
kinase, PhoR-related [Thermotoga maritima]
Length = 319
Score = 77.6 bits (188), Expect = 2e-13
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 8/191 (4%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
+F VSHEL TPL+ + A LL E DP+ + + +I L +L+
Sbjct: 109 DFVTAVSHELFTPLSASK-ANVFLLKDIENDPEKLEILGKVERSLDRMETIIRQLKVLTM 167
Query: 679 -----NERGHGSSNVAKVAEQLLDSHRAQLGGKRIEL-ILEDKHDLTVNAPESALSVALG 840
E V +V +L+ R ++ K+I++ + D T+ L
Sbjct: 168 IQLRLYELKMEHIPVEEVVHMVLEELREKIESKKIKVNVFVDVE--TIETDRFVFHTILK 225
Query: 841 NLIGNAVKYTL-EGRVTVRVLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHA-GHSQGGG 1014
NL+ NAVKY+ + V + + + + ++D G G+ E++ +++F+R YRG+ A + G G
Sbjct: 226 NLVSNAVKYSYPDSVVEISITGERLSVKDQGIGIKEEEKSRIFERFYRGSEALKMAPGSG 285
Query: 1015 IGLSIVSRLCDLYGWKVSV 1071
+GLSIV LCD G+++ V
Sbjct: 286 LGLSIVKHLCDTIGYRLEV 304
>gi|2687344|emb|CAA15885| (AL020958) two-component system sensor
[Streptomyces coelicolor]
Length = 481
Score = 77.6 bits (188), Expect = 2e-13
Identities = 68/235 (28%), Positives = 112/235 (46%), Gaps = 6/235 (2%)
Frame = +1
Query: 403 LAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELL-LTK 579
+AP E+ LAR+ ++ + + +V+++ R F AD SH+LR PLA + ELL L
Sbjct: 222 VAPSGGPPELRRLARSFNEMADHVEDVLEQQRAFVADASHQLRNPLAALLLRIELLALEL 281
Query: 580 PEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGG 759
PE + + + DL+ L L ++ ++V +A + + +
Sbjct: 282 PEGNEEIASVQTEGKRLARVLDDLLD-LALAEHSQADLKVTDVGALAAERVAAWSPTADV 340
Query: 760 KRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGR-VTVRVLE----KAVEIQD 924
K + L+ D T A ALS AL +I NAVK+T G V V V V + D
Sbjct: 341 KGVRLV-GDCPPTTGWADPVALSSALDAVIDNAVKFTPHGESVRVEVASTGDAATVVVTD 399
Query: 925 TGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIAT 1104
GPGL++++ ++ R +R + G G+GLSI L +S + +G+ T
Sbjct: 400 NGPGLTDEELTRVGDRFWRSGRHQNINGSGLGLSICRALLAAGNGSISFGHHEPHGLRVT 459
Query: 1105 L 1107
+
Sbjct: 460 V 460
>gi|3953516|dbj|BAA34717| (AB002529) sensor kinase rtpA [Pseudomonas
tolaasii]
Length = 917
Score = 77.6 bits (188), Expect = 2e-13
Identities = 66/195 (33%), Positives = 97/195 (48%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 287 EFLANMSHEIRTPLNGILGFTHLL-QKSELSPRQLDYLGTIEKSADNLLGIINEILDFSK 345
Query: 679 NERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G N+ + + L K++EL+ D L + L L
Sbjct: 346 IEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLALVGDPLRLKQIL 405
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NLI NA+K+T EG + R + + + +QDTG GLS QD LFQ + +
Sbjct: 406 TNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDVRALFQAFSQADN 465
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 466 SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE 500
>gi|463195 (L30101) pectate lyase [Pseudomonas viridiflava]
Length = 896
Score = 77.6 bits (188), Expect = 2e-13
Identities = 64/195 (32%), Positives = 99/195 (49%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 266 EFLANMSHEIRTPLNGILGFTHLL-QKSELTPRQYDYLGTIEKSADNLLSIINEILDFSK 324
Query: 679 NERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G + N+ + + L K++EL+ D L ++ L L
Sbjct: 325 IEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQIL 384
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NL+ NA+K+T +G + R + + + +QDTG GLS QD LFQ + +
Sbjct: 385 TNLVSNAIKFTRQGTIVARAMLEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADN 444
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 445 SISRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE 479
>gi|4433394|gb|AAD20724| (AF051157) sensor outer membrane protein EnvZ
[Vibrio cholerae]
Length = 438
Score = 77.6 bits (188), Expect = 2e-13
Identities = 71/277 (25%), Positives = 128/277 (45%), Gaps = 13/277 (4%)
Frame = +1
Query: 283 VFSGLSLLIGWWSASKVM-KPVSDLAKLLRTY-RGQTTNPKPLAPHFPDD---EVGELAR 447
+ L ++IG W ++ +P+ L K + RG+T PH P+ E+ + R
Sbjct: 158 IIMALLIVIGGWLFIRLQNRPLIALEKAAKMVGRGETP------PHLPEQGTLEIRSVTR 211
Query: 448 ALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXX 627
A + S + + + A +SH++RTPL IR ATE+ M P+
Sbjct: 212 AFNRMSKGIQALEEDRALLMAGISHDIRTPLTRIRLATEM------MSPEDSYLAESIIS 265
Query: 628 AEQQCSDLIGALL--LLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLT 801
++C+ +I + L N + ++ +A + S GG +++ + + +L
Sbjct: 266 DTEECNQIISQFMDYLKPVNREAFEAVDLNDIASDVASSE----GGYEVQIETDLQAELA 321
Query: 802 -VNAPESALSVALGNLIGNAVKY-----TLEGRVTVRVLEKAVEIQDTGPGLSEQDAAKL 963
A+ +L NL+ NA++Y + +T + ++D GPG+ K+
Sbjct: 322 PAFGNPIAIKRSLSNLVVNALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKV 381
Query: 964 FQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
F+ RG A S+G G+GL+IV R+ + VSV G+ A + F
Sbjct: 382 FEPFTRGDTARGSEGTGLGLAIVKRIVSQHHGAVSVSNRTQGGLRAQISF 431
>gi|5139602|emb|CAB45620.1| (AL079356) putative sensor-like histidine
kinase [Streptomyces coelicolor]
Length = 414
Score = 77.3 bits (187), Expect = 2e-13
Identities = 78/272 (28%), Positives = 120/272 (43%), Gaps = 5/272 (1%)
Frame = +1
Query: 292 GLSLLIGWWSASKVMKPVSDLAKLLRTYRG-----QTTNPKPLAPHFPDDEVGELARALD 456
G +LL+G ++ ++V + + A++ R + +P+ P P DEV +A ALD
Sbjct: 146 GATLLVGAFAVTRVTRRLHTTARVARRISAGDLDARVGDPRAQDPTRPQDEVASVAAALD 205
Query: 457 DYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ 636
+S L + ++ F ADV+HELRTPL + A ELL P P
Sbjct: 206 SMASSLQGKLLAEQRFTADVAHELRTPLTGLHAAAELL---PPGRPTELVRDRVAA---- 258
Query: 637 QCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPE 816
L LL +SR E G A E+L R L G + ++ D V
Sbjct: 259 -LRTLTEDLLEISRLESGR--ERPATEPEELGALVRRVLRGSGTDTRVDVVRDARVETDR 315
Query: 817 SALSVALGNLIGNAVKYTLEGRVTVRVLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAG 996
L LGNL+ NA ++ V + V + ++D G G E A QR +R G
Sbjct: 316 RRLERVLGNLVANAHRHG-RAPVVLTVDGAVITVRDHGDGYPEYLLAHGPQR-FR--TEG 371
Query: 997 HSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
++G G+GL+I ++ G ++ G +A L
Sbjct: 372 GAKGHGLGLTIALGQAEVLGARLEFTNPPDGGALARL 408
>gi|1498305 (U51927) SpiR [Salmonella typhimurium]
Length = 823
Score = 77.3 bits (187), Expect = 2e-13
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 11/229 (4%)
Frame = +1
Query: 421 DDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKX 600
+++V E +AL++ R +R +SHELRTP+ + GA ELL T P ++ +
Sbjct: 372 ENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTP-LNIEQ 430
Query: 601 XXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVA-----EQLLDSHRAQLGGKR 765
+I LL SR E GH + ++ + A +Q + + + K+
Sbjct: 431 QGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKK 490
Query: 766 IEL--ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG--RVTVRVLEKAV--EIQDT 927
+ L + L + L L NL+GNAVK+T G R+TV+ E+ + + D+
Sbjct: 491 LSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDS 550
Query: 928 GPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G G+ Q +++F Y+ +SQG GIGL+I S L + G ++++ G +L
Sbjct: 551 GKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSL 608
>gi|939724 (U30858) putative sensor kinase; regulatory protein for
production of antifungal antibiotics [Pseudomonas
fluorescens]
Length = 917
Score = 77.3 bits (187), Expect = 2e-13
Identities = 66/195 (33%), Positives = 98/195 (49%), Gaps = 20/195 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTPL I G T LL K E+ P+ + +I +L S+
Sbjct: 287 EFLANMSHEIRTPLNGILGFTHLL-QKSELTPRQLDYLGTIEKSADSLLGIINEILDFSK 345
Query: 679 NERGHG-----SSNVAKVAEQLLDSHRAQLGGKRIELILEDKHD--LTVNAPESALSVAL 837
E G N+ + + L K++EL+ D L++ L L
Sbjct: 346 IEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQIL 405
Query: 838 GNLIGNAVKYTLEGRVTVRVL---------EKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
NL+ NA+K+T EG + R + + + IQDTG GLS QD LFQ + +
Sbjct: 406 TNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGIGLSNQDVRALFQAFSQADN 465
Query: 991 AGHSQGGGIGLSIV--SRLCDLYGWKVSVQ--PGD 1083
+ Q GG GL +V RL + G ++ V PG+
Sbjct: 466 SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE 500
>gi|2599570 (AF029704) hybrid histidine kinase [Dictyostelium
discoideum]
Length = 709
Score = 77.3 bits (187), Expect = 2e-13
Identities = 73/245 (29%), Positives = 116/245 (46%), Gaps = 27/245 (11%)
Frame = +1
Query: 376 RGQTTNPKPLAPHFPDDEVGELA-----RALDDYSSRLTEVVQRDREFNADVSHELRTPL 540
+G+ + P + + +GEL L ++ E+ + +F A+VSHELRTPL
Sbjct: 168 KGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFFANVSHELRTPL 227
Query: 541 AVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVA 720
A+I G T+ LL +D + ++ LL +SR E G + N + V
Sbjct: 228 ALIVGPTDKLLKDENVDINVRKDLEIVARNARGLLKIVNNLLDISRLEAGKMNLNYSMVN 287
Query: 721 EQLLDSHRAQLGGKRIELILEDKH-DLTVNAPESALSVALG---------NLIGNAVKYT 870
A L E++ +K D ++ P + A+ NLI NA K+T
Sbjct: 288 L----GQTAHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITNLISNAFKFT 343
Query: 871 LEGRVTVRVLEK----------AVEIQDTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGG 1014
G +LEK + + DTGPG+ + +F+R + G+ G G
Sbjct: 344 PSGGAGKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRKHGGTG 403
Query: 1015 IGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
+GLSIV L+G V++ + G TLR
Sbjct: 404 LGLSIVKEFVTLHGGTVTIHNISTGGAQFTLR 435
>gi|3687664|gb|AAC62214.1| (AF049873) sensor protein [Lactococcus
lactis]
Length = 464
Score = 76.9 bits (186), Expect = 3e-13
Identities = 59/224 (26%), Positives = 112/224 (49%), Gaps = 12/224 (5%)
Frame = +1
Query: 421 DDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKX 600
+DE+GELA++++D + +L + + EF + V+HELRTPL I+G ++
Sbjct: 219 EDELGELAKSIEDLAEKLDFMKRERNEFLSSVAHELRTPLTFIKGYADIANRSTTSLEDK 278
Query: 601 XXXXXXXXXAEQQCSDLIGALLLLSR-NERGHGSSNVAKVAEQLLDSHRAQLGG----KR 765
+ + L+ L+ L++ E G + ++L++ +++ G KR
Sbjct: 279 TQYLRIIREESRHLTQLMEDLMNLAQLEENGFKVEKHQVLIQELINEVVSKVSGVFSEKR 338
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTL-EGRVTVRVLEK----AVEIQDTG 930
I ++ + + N + L NL+ NA KY+ E + + + + + I D G
Sbjct: 339 INFLISGEGNFYANIDFMRIEQVLVNLLMNAYKYSADESDIKLAFIPEKENFKIVISDKG 398
Query: 931 PGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
G+ EQD +F+R YR + + G G+GL+IV + + K+ V+ + G
Sbjct: 399 EGIPEQDLPYIFERFYRVDKSRTRTTGGVGLGLAIVQDIVKKHNGKIIVESIQNQG 454
>gi|6448582|emb|CAB61240.1| (AJ250891) virulence protein S [Klebsiella
pneumoniae]
Length = 1218
Score = 76.9 bits (186), Expect = 3e-13
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E +L AL + E + F A +SHE+RTP++ I G ELL T P+ + +
Sbjct: 690 ESRKLMEALQVEKDKAIEASRAKSRFLARMSHEIRTPVSAIMGFLELLATGPQSEREAQE 749
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKV-AEQLLDSHRAQLGGKRIELILE 783
Q LIG +L + + E G+ V E L + A G + L+
Sbjct: 750 SLQLAYATAQSLIGLIGDVLDMEKIESGNFELTPEWVDIEALTQATMANFAGLARQKNLQ 809
Query: 784 DKHDLTVNA------PESALSVALGNLIGNAVKYTLEGRVTVRV---------LEKAVEI 918
+NA A+ L N + NA+K+T+ G V ++V + + +
Sbjct: 810 LTVSYQLNAGGILFLDPQAIKQVLANFLSNAIKFTVSGGVEIKVETQPRENDAAQLMLSV 869
Query: 919 QDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSV 1071
+D+G G+SE++ LF+ + + G G+GL+I L D +SV
Sbjct: 870 KDSGVGISEEEQQLLFKPFSQASCGKKQMGSGLGLTICKELMDRMHGTISV 920
>gi|729184|sp|Q02541|COPS_PSESM SENSOR PROTEIN COPS
>gi|420852|pir||C47080 CopS - Pseudomonas syringae
>gi|151182 (L05176) transcriptional activator
[Pseudomonas syringae]
Length = 487
Score = 76.5 bits (185), Expect = 4e-13
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 14/261 (5%)
Frame = +1
Query: 199 AWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYR 378
AW L D+T + L+R + +L + LS +GW A ++PV+ + + +
Sbjct: 141 AWLVL--DVTTHMHFFAMLERWFWGVLLASTVLSAALGWLVAKNGLRPVARVTQTAASMS 198
Query: 379 GQTTNPK-PLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRG 555
+ + PL P DE+ L A + RL + R F+AD++HELRTP++ +R
Sbjct: 199 AGSLKERIPLEP--VPDELRALITAFNSMLGRLDDSFMRLSNFSADIAHELRTPISNLRT 256
Query: 556 ATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLD 735
TE++L K + S +I +L L++++ G V + E L
Sbjct: 257 HTEVILAKKRAPEVYEENLSSNLEELNRLSGIIDGMLFLAKSDNG---LIVPEAVELDLR 313
Query: 736 SHRAQLGGKRIELILEDK-------HDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVR 894
+ ++L G E + EDK + ++ A + + NL+ NA++YT G T++
Sbjct: 314 TVISKLFG-YYEFLAEDKGIQLQASGNASIFADSVMIDRVVSNLLSNALRYTSSGE-TIK 371
Query: 895 VL------EKAVEIQDTGPGLSEQDAAKLFQRGYR 981
V + +++ GP + Q ++F R YR
Sbjct: 372 VSIHDHGGRVELRLENPGPEIVPQHLDRIFDRFYR 406
>gi|114830|sp|P26607|BARA_ECOLI SENSOR PROTEIN BARA
>gi|78846|pir||S20550 sensor-regulator protein barA -
Escherichia coli >gi|216535|dbj|BAA01710| (D10888)
sensor-regulator protein [Escherichia coli] >gi|1789149
(AE000362) sensor-regulator, activates OmpR by
phophorylation [Escherichia coli]
Length = 918
Score = 75.7 bits (183), Expect = 7e-13
Identities = 71/206 (34%), Positives = 105/206 (50%), Gaps = 23/206 (11%)
Frame = +1
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
LD R E + EF A++SHELRTPL + G T L L K E+ P +
Sbjct: 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTL-KTELTPTQRDHLNTIERS 337
Query: 631 EQQCSDLIGALLLLSRNERGH---------GSSNVAKVAEQLLDSHRAQLGGKRIELILE 783
+I +L S+ E G S + +V L S K +EL L
Sbjct: 338 ANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSH----DKGLELTLN 393
Query: 784 DKHDLTVNAPESALSV--ALGNLIGNAVKYTLEGRVTVRVLEKA---------VEIQDTG 930
K D+ N L + + NL+GNA+K+T G + + V ++A V+I+DTG
Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453
Query: 931 PGLSEQDAAKLFQRGYRGTHAGHSQ---GGGIGLSIVSRLCDLYGWKVS 1068
G+ E+D ++LFQ +R A S+ G G+GL I +L + G +S
Sbjct: 454 IGIPERDQSRLFQ-AFRQADASISRRHGGTGLGLVITQKLVNEMGGDIS 501
>gi|1805580|dbj|BAA16571| (D90894) sensor-regulator protein barA
[Escherichia coli]
Length = 813
Score = 75.7 bits (183), Expect = 7e-13
Identities = 71/206 (34%), Positives = 105/206 (50%), Gaps = 23/206 (11%)
Frame = +1
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
LD R E + EF A++SHELRTPL + G T L L K E+ P +
Sbjct: 174 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTL-KTELTPTQRDHLNTIERS 232
Query: 631 EQQCSDLIGALLLLSRNERGH---------GSSNVAKVAEQLLDSHRAQLGGKRIELILE 783
+I +L S+ E G S + +V L S K +EL L
Sbjct: 233 ANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSH----DKGLELTLN 288
Query: 784 DKHDLTVNAPESALSV--ALGNLIGNAVKYTLEGRVTVRVLEKA---------VEIQDTG 930
K D+ N L + + NL+GNA+K+T G + + V ++A V+I+DTG
Sbjct: 289 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 348
Query: 931 PGLSEQDAAKLFQRGYRGTHAGHSQ---GGGIGLSIVSRLCDLYGWKVS 1068
G+ E+D ++LFQ +R A S+ G G+GL I +L + G +S
Sbjct: 349 IGIPERDQSRLFQ-AFRQADASISRRHGGTGLGLVITQKLVNEMGGDIS 396
>gi|1073340|pir||S52258 copper sensor protein pcoS - Escherichia coli
>gi|619133|emb|CAA58530| (X83541) pcoS [Escherichia coli]
Length = 466
Score = 75.7 bits (183), Expect = 7e-13
Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 15/265 (5%)
Frame = +1
Query: 280 LVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDD 459
LVF +S+ +GW + +KP+ ++ L + + + + L P E+ E + ++
Sbjct: 180 LVF--ISVFLGWLTTRIGLKPLREMTSLASSMTVHSLDQR-LNPDLAPPEISETMQEFNN 236
Query: 460 YSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-Q 636
RL ++ +F++D++HELRTP++ + T+ L K E D E +
Sbjct: 237 MFDRLEGAFRKLSDFSSDIAHELRTPVSNLMMQTQFALAK-ERDVSHYREILFANLEELK 295
Query: 637 QCSDLIGALLLLSRNERG------HGSSNVAKVAE-QLLDSHRAQLGGKRIELILEDKHD 795
+ S + +L L+R+E G H A++ E + L A GK I + + +
Sbjct: 296 RLSRMTSDMLFLARSEHGLLRLDKHDVDLAAELNELRELFEPLADETGKTITV----EGE 351
Query: 796 LTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK-----AVEIQDTGPGLSEQDAAK 960
V L A NL+ NA+KY+ + T LE+ V I +T G + +
Sbjct: 352 GVVAGDSDMLRRAFSNLLSNAIKYSPDNTCTAIHLERDSDCVNVMITNTMSGQVPANLER 411
Query: 961 LFQRGYRGTHAG--HSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
LF R YR + +++G G+GLSI + +G ++S +
Sbjct: 412 LFDRFYRADSSRFYNTEGAGLGLSITRSIIHAHGGELSAE 451
>gi|130131|sp|P08400|PHOR_ECOLI PHOSPHATE REGULON SENSOR PROTEIN PHOR
>gi|72577|pir||RGECFR phosphate regulon regulatory
protein - Escherichia coli >gi|581188|emb|CAA28409|
(X04704) phoR gene product (AA 1-431) [Escherichia coli]
>gi|1657596|gb|AAB18124.1| (U73857) phosphate regulon
sensor protein phoR [Escherichia coli] >gi|1786600
(AE000146) positive and negative sensor protein for pho
regulon [Escherichia coli]
Length = 431
Score = 75.7 bits (183), Expect = 7e-13
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
R F A+VSHELRTPL V++G E++ +P Q+ L+ LL LS
Sbjct: 205 RNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLS 264
Query: 676 RNERG--HGSSNVAKVAEQL--LDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGN 843
+ E H + V L ++ L K+ E + L V+ E L A+ N
Sbjct: 265 KIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISN 324
Query: 844 LIGNAVKYTLEG-RVTVRVLE----KAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ- 1005
L+ NAV +T EG +TVR ++D GPG++ + +L +R YR A Q
Sbjct: 325 LVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQT 384
Query: 1006 -GGGIGLSIVSRLCDLYGWKVSVQ 1074
G G+GL+IV + + +++++
Sbjct: 385 GGSGLGLAIVKHAVNHHESRLNIE 408
>gi|6435833|gb|AAF08344.2|AF083422_1 (AF083422) tyrosine kinase DivL
[Caulobacter crescentus]
Length = 769
Score = 75.7 bits (183), Expect = 7e-13
Identities = 71/216 (32%), Positives = 119/216 (54%), Gaps = 16/216 (7%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
+L AL D S+ L E + R+F +VS+ELRTPL I G +ELL + +
Sbjct: 522 DLQSALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVA 581
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNV--AKVAEQLLDSHR-----AQLGGKRIEL 774
A Q + I +L +++ + G + + +V++ LL++ AQLGG + L
Sbjct: 582 AVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGG--VTL 639
Query: 775 ILEDKHDL-TVNAPESALSVALGNLIGNAVKYTLE-GRVTV---RVL-EKAVEIQDTGPG 936
+E + D+ + L+ L +L+ NA++ T GRVT+ R L E +++ DTG G
Sbjct: 640 AVECEEDVGLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRG 699
Query: 937 LSEQDAAKLFQRGYRGTHAGHSQGG-GIGLSIVSRLCDLYGWKVSV--QPGD 1083
+ A +F R G +GG G+GL++V L +L+G V++ +PG+
Sbjct: 700 VPFHVQAHIFDR-----FVGRDRGGPGLGLALVKALVELHGGWVALESEPGN 746
>gi|2500767|sp|P76339|YEDV_ECOLI PROBABLE SENSOR PROTEIN YEDV
>gi|1736637|dbj|BAA15795| (D90835) Sensor protein CopS
(EC 2.7.3.-). [Escherichia coli] >gi|1788279 (AE000288)
putative 2-component sensor protein [Escherichia coli]
Length = 452
Score = 75.3 bits (182), Expect = 9e-13
Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 9/210 (4%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E+ L +AL+ L + +R +F D++HELRTP+ + G ++ L++ +
Sbjct: 214 ELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQK 273
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIE 771
+ S L +L L+R ++ + S ++ K E LLD + L ++ E
Sbjct: 274 TIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLD-YLEYLSDEK-E 331
Query: 772 LILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVL---EKAVEIQDTGPGL 939
+ + + + + A + L L NLI NA++Y+ E R+ + + I PG
Sbjct: 332 ICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGT 391
Query: 940 SEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYG 1056
+ KLF+R +RG ++ HS G G+GLS+V + +L+G
Sbjct: 392 KINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHG 430
>gi|2960188|emb|CAA18086.1| (AL022121) hypothetical protein Rv3764c
[Mycobacterium tuberculosis]
Length = 475
Score = 75.3 bits (182), Expect = 9e-13
Identities = 67/224 (29%), Positives = 112/224 (49%), Gaps = 20/224 (8%)
Frame = +1
Query: 418 PDDEVGELARALDDYSSRLTEVVQRD-------REFNADVSHELRTPLAVIRGATELLLT 576
P EVG+L AL+ + + R+F AD SHELRTPLA IRG TEL
Sbjct: 215 PSTEVGQLGSALNRMLDHIAAALSARQASETCVRQFVADASHELRTPLAAIRGYTELTQR 274
Query: 577 KPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERG----HGSSNVAKVAEQLLDSH 741
+ DP+ +E ++ + L+ LLLL+R + G G +++++A +
Sbjct: 275 IGD-DPEAVAHAMSRVASETERITRLVEDLLLLARLDSGRPLERGPVDMSRLAVDAVSD- 332
Query: 742 RAQLGGKRIELILE-DKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK---- 906
A + G + L+ + + + L + NL+ NA +T G + L
Sbjct: 333 -AHVAGPDHQWALDLPPEPVVIPGDAARLHQVVTNLLANARVHTGPGTIVTTRLSTGPTH 391
Query: 907 -AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGG--GIGLSIVSRLCDLYGWKVSVQP 1077
+++ D GPG+ +++F+R RG + Q G G+GL+IVS + + ++V
Sbjct: 392 VVLQVIDNGPGIPAALQSEVFERFARGDTSRSRQAGSTGLGLAIVSAVVKAHNGTITVSS 451
Query: 1078 GDSY 1089
Y
Sbjct: 452 SPGY 455
>gi|4530446|gb|AAD22037.1| (AF118229) histidine kinase PnpS
[Streptococcus pneumoniae]
Length = 422
Score = 74.9 bits (181), Expect = 1e-12
Identities = 58/190 (30%), Positives = 105/190 (54%), Gaps = 12/190 (6%)
Frame = +1
Query: 502 FNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ-QCSDLIGALLLLSR 678
F ++ SHELRTP+ I+G E + + E + ++ LL LS+
Sbjct: 200 FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIVEHLLTLSK 259
Query: 679 NER---GHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLI 849
++ + ++A+ + L S + QL K ++L ++ D+T+ + LS L NL+
Sbjct: 260 AQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLLSQILLNLL 319
Query: 850 GNAVKYTLE-GRVTVRVLEK----AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ--- 1005
NA++YT + G++ V+ + + + DTG G+S+ + ++F+R YR + G S+
Sbjct: 320 SNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLEQDRIFERFYR-VNKGRSRQTG 378
Query: 1006 GGGIGLSIVSRLCDLYGWKVSV 1071
G G+GL+IV L L G +V+V
Sbjct: 379 GTGLGLAIVKELSQLLGGQVTV 400
>gi|585701|sp|P37894|PLEC_CAUCR NON-MOTILE AND PHAGE-RESISTANCE
PROTEIN >gi|281463|pir||S27533 histidine protein kinase
pleC - Caulobacter crescentus >gi|144273 (M91449)
non-motile and phage-resistance protein [Caulobacter
crescentus]
Length = 842
Score = 74.9 bits (181), Expect = 1e-12
Identities = 69/228 (30%), Positives = 119/228 (51%), Gaps = 23/228 (10%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTK---PEMDP 594
+++ ELAR + + + EF A++SHELRTPL I G +E+++ + P D
Sbjct: 578 EQLAELARKYETEKVKAESANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQ 637
Query: 595 KXXXXXXXXXXAEQQCSDLIGALLLLSRNERG-----HGSSNVAKVAEQL--LDSHRAQL 753
+ + Q LI +L +S+ E G S ++ VAE L +RA+
Sbjct: 638 RYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEA 697
Query: 754 GGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYT-LEGRVTVRVLEK-------- 906
G ++++ + + A A+ L NL+ NA+K+T G VTVRV +
Sbjct: 698 AGLKLDIDFPQLPE--IEADYRAVKQVLLNLLSNAIKFTPRAGSVTVRVEVRRDPFGDLI 755
Query: 907 AVEIQDTGPGLSEQDAAKLFQ--RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ-- 1074
V + DTG G++++D A+L + + +QG G+GL++ L ++ + +
Sbjct: 756 KVSVTDTGIGIAKEDLARLAKPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHST 815
Query: 1075 PGDSYGVIATL 1107
PG+ V TL
Sbjct: 816 PGEGTTVSFTL 826
>gi|5830530|emb|CAB54573.1| (AJ006394) histidine kinase [Streptococcus
pneumoniae]
Length = 443
Score = 74.9 bits (181), Expect = 1e-12
Identities = 58/190 (30%), Positives = 105/190 (54%), Gaps = 12/190 (6%)
Frame = +1
Query: 502 FNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ-QCSDLIGALLLLSR 678
F ++ SHELRTP+ I+G E + + E + ++ LL LS+
Sbjct: 221 FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIVEHLLTLSK 280
Query: 679 NER---GHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLI 849
++ + ++A+ + L S + QL K ++L ++ D+T+ + LS L NL+
Sbjct: 281 AQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLLSQILLNLL 340
Query: 850 GNAVKYTLE-GRVTVRVLEK----AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ--- 1005
NA++YT + G++ V+ + + + DTG G+S+ + ++F+R YR + G S+
Sbjct: 341 SNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLEQDRIFERFYR-VNKGRSRQTG 399
Query: 1006 GGGIGLSIVSRLCDLYGWKVSV 1071
G G+GL+IV L L G +V+V
Sbjct: 400 GTGLGLAIVKELSQLLGGQVTV 421
>gi|2182990 (U81485) histidine kinase [Lactococcus lactis cremoris]
Length = 517
Score = 74.5 bits (180), Expect = 1e-12
Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 8/196 (4%)
Frame = +1
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
++D SS V F A+VSHEL+TPL I+G ELL T +
Sbjct: 291 MNDVSS-YRRTVDAHNAFIANVSHELKTPLTSIKGFAELLETDTVSPSETKNFASIIHKE 349
Query: 631 EQQCSDLI-GALLLLSRNERGHGSS-NVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTV 804
+ L+ LLL +N+R +++ + + +L S Q+ K + L + + ++T
Sbjct: 350 SSRLMSLVQDTLLLTKQNQRIEKKKLSLSALIQNILQSSSPQISEKSLRLETQIE-EITF 408
Query: 805 NAPESALSVALGNLIGNAVKYT-LEGRVTVRVLEK----AVEIQDTGPGLSEQDAAKLFQ 969
E + NLI NA+KYT +G++ V + + + D GPGLSE ++F
Sbjct: 409 KTNEQMVHSIFENLIENAIKYTPAQGQIFVSLHHEQDKIIFSVTDNGPGLSEIQKERIFD 468
Query: 970 RGYRGTHA-GHSQGGGIGLSIVSR 1038
R YR + G G+GL+IV +
Sbjct: 469 RFYRADESRAEVSGTGLGLAIVEK 492
>gi|2635799|emb|CAB15292| (Z99120) similar to two-component sensor
histidine kinase [YvqA] [Bacillus subtilis]
>gi|2832827|emb|CAA11751.1| (AJ223978) putative sensory
protein kinase, YvqB [Bacillus subtilis]
Length = 451
Score = 74.5 bits (180), Expect = 1e-12
Identities = 69/317 (21%), Positives = 150/317 (46%), Gaps = 14/317 (4%)
Frame = +1
Query: 145 NAGKLFAYYKLAVRKADDAWFFLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGW--- 315
N K+F K + + L+Y + ++ R + L L+ +L + +L+ W
Sbjct: 126 NGEKVFFVIKKGLSVNGQSAMMLSYAL-DSYRDD--LAYTLFKQLLFIIAVVILLSWIPA 182
Query: 316 -WSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQR 492
W A + +P+ K ++ Q + DE+G+L +++ +L + +
Sbjct: 183 IWLAKYLSRPLVSFEKHVKRISEQDWDDPVKVDR--KDEIGKLGHTIEEMRQKLVQKDET 240
Query: 493 DREFNADVSHELRTPLAVIRGATEL----LLTKPEMDPKXXXXXXXXXXAEQQCSDLIGA 660
+R ++SH+L+TP+ VIRG T+ + K +++ E++ DL+
Sbjct: 241 ERTLLQNISHDLKTPVMVIRGYTQSIKDGIFPKGDLENTVDVIECEALKLEKKIKDLLYL 300
Query: 661 LLL--LSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVA 834
L L++ + H ++ +V E++++ R + K + ++ + D+ + +
Sbjct: 301 TKLDYLAKQKVQHDMFSIVEVTEEVIE--RLKWARKELSWEIDVEEDILMPGDPEQWNKL 358
Query: 835 LGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHS 1002
L N++ N ++Y E ++ + + + + I++ GP + ++ + L Y + G
Sbjct: 359 LENILENQIRYA-ETKIEISMKQDDRNIVITIKNDGPHIEDEMLSSL----YEPFNKGKK 413
Query: 1003 QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGV 1095
GIGLSIV R+ L+ +S++ D GV
Sbjct: 414 GEFGIGLSIVKRILTLHKASISIE-NDKTGV 443
>gi|3641254|gb|AAC99645.1| (AF054806) putative ethylene receptor;
Cm-ETR1 [Cucumis melo var. reticulatus]
Length = 740
Score = 74.1 bits (179), Expect = 2e-12
Identities = 68/198 (34%), Positives = 108/198 (54%), Gaps = 33/198 (16%)
Frame = +1
Query: 457 DYSSRLTEVVQRDR-EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE 633
D + R E R R +F A ++HE+RTP+ I A LL + E+ P+ +
Sbjct: 331 DLARREAETAIRARNDFLAVMNHEMRTPMHAII-ALSSLLQETELTPEQRLMVETILKSS 389
Query: 634 QQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDL 798
+ LI +L LSR E G G+ N+ V +++L+ + K++ L L DL
Sbjct: 390 NLLATLINDVLDLSRLEDGSLQLDIGTFNLHAVFKEVLNLIKPVTLVKKLSLTLHLGPDL 449
Query: 799 TVNA--PESALSVALGNLIGNAVKYTLEGRVTVRVLEKA--------------------- 909
V A E L A+ N++GNAVK++ EG +++ +
Sbjct: 450 PVFAVGDEKRLMQAILNVVGNAVKFSKEGSISISAIVAKSETFREIRVPDFHPVPSDSHF 509
Query: 910 ---VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGG-GIGLSIVSRLCDL 1050
V+++DTG G+S QD KLF + + T + GG G+GL+I R +L
Sbjct: 510 YLRVQVKDTGSGISPQDIPKLFTKFAQTTVGPRNSGGSGLGLAICKRFVNL 560
>gi|2182996 (U81488) histidine kinase [Lactococcus lactis cremoris]
Length = 441
Score = 74.1 bits (179), Expect = 2e-12
Identities = 76/284 (26%), Positives = 141/284 (48%), Gaps = 14/284 (4%)
Frame = +1
Query: 247 RQLKRALYISV---LVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHF 417
+ + RA+ + V ++ ++L++ +A+ + +P++D+ +L T + K L
Sbjct: 142 KSMIRAILVIVAVMIILFFIALILIRKAANTISQPLTDM--MLATDEKEV---KQLPVSK 196
Query: 418 PDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPK 597
EV +L+++ + +RL + ++ +++F +D SHELRTP+A IRG LL + P+
Sbjct: 197 NPIEVRQLSQSFNRLLNRLNQKIENEQQFVSDASHELRTPVAAIRGHVTLLKRRWHEHPE 256
Query: 598 XXXXXXXXXXAEQ-QCSDLIGALLLLSRN---ERGHGSSNVAKVAEQLLDSHRAQLGGKR 765
E + LI LL +SR E N+ + ++++ + L K
Sbjct: 257 IIDDSLSYIDEESLRMKGLIENLLTISRGNHLEVNKEKFNLTEFTDKVVSEIQPALSQK- 315
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYT---LEGRVTVRVLEKAVEIQ--DTG 930
+ K ++ V A + +L + I NA KY+ E +V + VE+Q D G
Sbjct: 316 --ITFNGKSEIFVRADKMSLYKIIIVFIENAGKYSPQDSEIKVKISSENHQVELQVADEG 373
Query: 931 PGLSEQDAAKLFQRGYRGTHAGHSQ--GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
G+ E++ +F+R YR + S+ G G+GL+I + L +V V G I
Sbjct: 374 VGIPEEEKINIFERFYRIDKSRSSEIPGTGLGLAIAKQYAQLNHAEVFVTNNTPKGSI 431
>gi|4206625 (AF067954) putative membrane kinase sensor SilS
[Salmonella typhimurium]
Length = 497
Score = 73.7 bits (178), Expect = 3e-12
Identities = 66/274 (24%), Positives = 134/274 (48%), Gaps = 19/274 (6%)
Frame = +1
Query: 253 LKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEV 432
LK+ L +V S L +LI + + P+ +++ ++ + + + L P E+
Sbjct: 184 LKKNLIAIAVVISLLIVLIIRIAVRQGHLPLRNVSNAIKNITSENLDAR-LEPTRVPIEL 242
Query: 433 GELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXX 612
+L + + ++ +V R F+AD++HE+RTP+ + TE+ L++ +
Sbjct: 243 EQLVISFNHMIGKIEDVFTRQANFSADIAHEIRTPITNLVTQTEIALSQDRTQKELEDVL 302
Query: 613 XXXXXAEQQCSDLIGALLLLSRNERGH----------GSSNVAKVAEQLLDSHRAQLGGK 762
+ + ++ +L L++ + S N KV ++ LG K
Sbjct: 303 YSSLEEYNRMTKMVSDMLFLAQADNNQLIPDRVRFDLQSQNSLKVFRVFSEA----LGPK 358
Query: 763 RIELILEDKHDL--TVNAPESALSVALGNLIGNAVKYTLEGR-VTVRVLEKA----VEIQ 921
++L + + V A+ NL+ NA++YT EG+ +TV + E+ + I+
Sbjct: 359 ETPILLLKFNGMPCLVEGDPQMFRRAINNLLSNALRYTPEGQAITVSIREQESFFDLVIE 418
Query: 922 DTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+ G + E+ ++LF R YR + +G GIGL+IV + + + +V V+
Sbjct: 419 NPGKPIPEEHLSRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVEAHHGRVQVE 471
>gi|2623997|emb|CAB07976| (Z93941) YirC [Bacillus subtilis]
Length = 322
Score = 73.4 bits (177), Expect = 3e-12
Identities = 62/281 (22%), Positives = 135/281 (47%), Gaps = 14/281 (4%)
Frame = +1
Query: 253 LKRALYISVLVFSGLSLLIGW----WSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFP 420
L L+ +L + +L+ W W A + +P+ K ++ Q +
Sbjct: 30 LAYTLFKQLLFIIAVVILLSWIPAIWLAKYLSRPLVSFEKHVKRISEQDWDDPVKVDR-- 87
Query: 421 DDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATEL----LLTKPEM 588
DE+G+L +++ +L + + +R ++SH+L+TP+ VIRG T+ + K ++
Sbjct: 88 KDEIGKLGHTIEEMRQKLVQKDETERTLLQNISHDLKTPVMVIRGYTQSIKDGIFPKGDL 147
Query: 589 DPKXXXXXXXXXXAEQQCSDLIGALLL--LSRNERGHGSSNVAKVAEQLLDSHRAQLGGK 762
+ E++ DL+ L L++ + H ++ +V E++++ R + K
Sbjct: 148 ENTVDVIECEALKLEKKIKDLLYLTKLDYLAKQKVQHDMFSIVEVTEEVIE--RLKWARK 205
Query: 763 RIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTG 930
+ ++ + D+ + + L N++ N ++Y E ++ + + + + I++ G
Sbjct: 206 ELSWEIDVEEDILMPGDPEQWNKLLENILENQIRYA-ETKIEISMKQDDRNIVITIKNDG 264
Query: 931 PGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGV 1095
P + ++ + L Y + G GIGLSIV R+ L+ +S++ D GV
Sbjct: 265 PHIEDEMLSSL----YEPFNKGKKGEFGIGLSIVKRILTLHKASISIE-NDKTGV 314
>gi|1653170|dbj|BAA18086| (D90911) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 633
Score = 73.4 bits (177), Expect = 3e-12
Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 31/192 (16%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A +SHELRTPL I G ++LL P + P E +LI +L +S+
Sbjct: 165 EFLASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDIINRSGE-HLLELINDILEMSK 223
Query: 679 NERGHGSSNVAKVAEQLLDSHRA--------QLGGKRIELILEDKHDLTVNAPE------ 816
E G + N E+++D HR QL + +L+L K + + PE
Sbjct: 224 IEAGRTTLN-----EKIIDCHRLLDNLQALFQLRAQEKQLLL--KVERSPEVPEWIKTDG 276
Query: 817 SALSVALGNLIGNAVKYTLEGRVTVRV---------------LEKAVEIQDTGPGLSEQD 951
L L NL+ NA+K+T +G VT++V + + DTGPG++ +
Sbjct: 277 GKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHE 336
Query: 952 AAKLFQRGYRGTHAG--HSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+LF + T G QG G+GL I + L G ++ V+
Sbjct: 337 MDELFV-PFAQTETGLKSCQGNGLGLPISQKFVQLMGGQIQVR 378
>gi|2982998 (AE000683) histidine kinase sensor protein [Aquifex
aeolicus]
Length = 310
Score = 73.0 bits (176), Expect = 4e-12
Identities = 64/231 (27%), Positives = 111/231 (47%), Gaps = 9/231 (3%)
Frame = +1
Query: 421 DDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKX 600
+D VG L + + D + + +EF A++SHEL+TPLAV+ E LL E K
Sbjct: 77 EDGVGILVKDITDREL----MKETQKEFLANLSHELKTPLAVVMNTLETLLDMEEESVKR 132
Query: 601 XXXXXXXXXAEQQCSDLIGALLLLSRNERGHG----SSNVAKVAEQLLDSHRAQLGGKRI 768
++ S L + +LS + +G G N+ +V ++L + K I
Sbjct: 133 ELIGRALKRVKEAIS-LTETVYMLSFS-KGKGKVREEVNLEEVLSEVLKDLEENIKEKEI 190
Query: 769 ELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG---RVTVRVLEKAV--EIQDTGP 933
+ + D + + + V + NL+ NAV+Y G V R E A+ ++DTG
Sbjct: 191 SVEI-DLKEKCLKGNREEIKVIIRNLLQNAVEYNKRGGKVLVETRKDENAIVLSVEDTGI 249
Query: 934 GLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
G+ + + + +G S+G G+GL++V ++ YG K+++Q G +RF
Sbjct: 250 GIENRKIPLILEPFVKGE---ESKGLGLGLALVKKIAQNYGAKINIQSERGKGTKVEIRF 306
>gi|1001594|dbj|BAA10222| (D64000) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 1178
Score = 73.0 bits (176), Expect = 4e-12
Identities = 65/210 (30%), Positives = 98/210 (45%), Gaps = 15/210 (7%)
Frame = +1
Query: 478 EVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEM--DPKXXXXXXXXXXAEQQCSDL 651
E+ + +F VSHE RTPL I G ELL + K + Q+ L
Sbjct: 935 ELNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQL 994
Query: 652 IGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKR-IELILEDKHDLTVNAP 813
I +L +SR + G+ N+ +A L+++ LG + EL K D
Sbjct: 995 IDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLVD 1054
Query: 814 ESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE-----IQDTGPGLSEQDAAKLFQRGY 978
L L N++ NA+KY+ G + K E ++D G G+ QD KLF+ +
Sbjct: 1055 VRLLRHILENILSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFH 1114
Query: 979 RGTHAGHSQGGGIGLSIVSRLCDLYGWKVSV--QPGDSYGVIATL 1107
R ++ G G G+GLSIV R + G + V PG ++ L
Sbjct: 1115 RASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKL 1159
>gi|6136814|dbj|BAA85817.1| (AB026498) ethylene receptor CS-ETR1
[Cucumis sativus]
Length = 740
Score = 73.0 bits (176), Expect = 4e-12
Identities = 70/198 (35%), Positives = 111/198 (55%), Gaps = 34/198 (17%)
Frame = +1
Query: 457 DYSSRLTEVVQRDR-EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE 633
D + R E R +F A ++HE+RTP+ I A LL + E+ P+ +
Sbjct: 331 DLARREAETANHARNDFLAVMNHEMRTPMHAII-ALSSLLQETELTPEQRLMVETILKSS 389
Query: 634 QQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDL 798
+ LI +L LSR E G G+ N+ V +++L+ + K++ L L DL
Sbjct: 390 NLLATLINDVLDLSRLEDGSLQLDIGTFNLHAVFKEVLNLIKPVTLVKKLSLTLHLGLDL 449
Query: 799 TVNA--PESALSVALGNLIGNAVKYTLEGRVTV-RVLEKA-------------------- 909
V A E L A+ N++GNAVK++ EG +++ ++ KA
Sbjct: 450 PVFAVGDEKRLMQAILNVVGNAVKFSKEGSISISAIVAKAETFREIRVPDFHPVPSDSHF 509
Query: 910 ---VEIQDTGPGLSEQDAAKLFQRGYRGTHAG--HSQGGGIGLSIVSRLCDL 1050
V+++DTG G+S QD KLF + + T G +S G G+GL+I R +L
Sbjct: 510 YLRVQVKDTGSGISPQDIPKLFTK-FAQTTVGPRNSCGSGLGLAICKRFVNL 560
>gi|2745902 (AF039746) ERS-like ethylene receptor [Pisum sativum]
Length = 635
Score = 73.0 bits (176), Expect = 4e-12
Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 35/227 (15%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALD + +F A ++HE+RTP+ I + LLL + E+ P+
Sbjct: 322 DQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLL-ETELTPEQR 380
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G G N V E++++ + K++
Sbjct: 381 VMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMGKINFHGVLEEVIELIKPIASVKKL 440
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
+ L DL NA E L L N++GNAVKYT EG V++R
Sbjct: 441 PITLILAPDLPDNAIGDEKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPE 500
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAG---HSQGGGIGLSIVSRL 1041
V+++D+G G+ QD LF + + + +G S G G+GL+I R
Sbjct: 501 FYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTK-FTQSQSGAGRSSSGSGLGLAICKRF 559
Query: 1042 CDLYGWKVSVQ-PGDSYGVIAT 1104
+L G + ++ G G AT
Sbjct: 560 VNLMGGHIWMESEGPDKGSTAT 581
>gi|1652639|dbj|BAA17559| (D90907) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 998
Score = 73.0 bits (176), Expect = 4e-12
Identities = 65/205 (31%), Positives = 105/205 (50%), Gaps = 22/205 (10%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
EF A++SHE+RTP+ I G +LLL K + + + LI +L +S+
Sbjct: 602 EFLANISHEIRTPMNAILGFCDLLLQKDLSLSQTKKYLNAIGSSSKILLALIDDILDISK 661
Query: 679 NERGHGSSNVAKVAEQLLDSHRAQLGGKRIE---LILEDKHDLTVNA----PESALSVAL 837
E G ++ V +++ Q+ + E L+L + D T+N L L
Sbjct: 662 IEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQIL 721
Query: 838 GNLIGNAVKYTLEGRVTVRV-------------LEKAVEIQDTGPGLSEQDAAKLFQ--R 972
NL+GNA+K+T EG+V + + + A+E+ DTG G++ +D AK+F
Sbjct: 722 FNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFT 781
Query: 973 GYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
+G G G+GL+I RL L G ++S+ G L F
Sbjct: 782 QSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGSTFILHF 828
>gi|1172486|sp|P45609|PHOR_SHIDY PHOSPHATE REGULON SENSOR PROTEIN PHOR
>gi|280133|pir||B44753 phoR protein - Shigella
dysenteriae >gi|294893 (M31793) phosphate regulatory
protein phoR (gtg start codon) [Shigella dysenteriae]
Length = 431
Score = 72.6 bits (175), Expect = 6e-12
Identities = 59/193 (30%), Positives = 95/193 (48%), Gaps = 11/193 (5%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
R F A+VSHELR PL V++G E++ +P Q+ L+ LL LS
Sbjct: 205 RNFFANVSHELRMPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLS 264
Query: 676 RNERGHGSSNVAKV----AEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGN 843
+ E KV ++++ L K+ E + L V+ E L A+ N
Sbjct: 265 KIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNALKVSGNEDQLRSAISN 324
Query: 844 LIGNAVKYTLEG-RVTVRVLE----KAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ- 1005
L+ NAV +T EG +TVR ++D GPG++ + +L +R YR A Q
Sbjct: 325 LVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQT 384
Query: 1006 -GGGIGLSIVSRLCDLYGWKVSVQ 1074
G G+GL+IV + + +++++
Sbjct: 385 GGSGLGLAIVKHAVNHHESRLNIE 408
>gi|1754642|dbj|BAA14000| (D89625) adenylate cyclase [Anabaena sp.]
Length = 1155
Score = 72.6 bits (175), Expect = 6e-12
Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Frame = +1
Query: 457 DYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ 636
+ + RL ++ ++ EF ++SHE RTP+ +I+G E + E +
Sbjct: 503 EQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLESAVGTGE--GLSYAQSAIALCNSR 560
Query: 637 QCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLT 801
+ L+ LL L R + G ++ Q+++S R K + L E T
Sbjct: 561 RLLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELDECPT 620
Query: 802 VNAPESALSVALGNLIGNAVKYTLE-GRVTVRVLEKA----VEIQDTGPGLSEQDAAKLF 966
V + NL+ NA+K+T E G ++V++ + +++QDTG G+ ++ LF
Sbjct: 621 VYIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIPHLF 680
Query: 967 Q--RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
+ R G+ +G G+GL++V L +L+G +V+V G TL
Sbjct: 681 ERFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVDSVYGKGTTFTL 729
>gi|4138853 (AF098272) ethylene response sensor [Vigna radiata]
Length = 636
Score = 72.6 bits (175), Expect = 6e-12
Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 36/219 (16%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALD + +F A ++HE+RTP+ I + LLL + E+ P+
Sbjct: 322 DQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLL-ETELTPEQR 380
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G G N+ V ++++ + K++
Sbjct: 381 VMIETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKFNLHGVLGEIVELIKPIASVKKL 440
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
+ L DL +A E L+ L N++GNAVK+T EG V++R
Sbjct: 441 PITLILAPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRASVAKPESLQDWRPPE 500
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQR--GYRGTHAGHSQGGGIGLSIVSRLC 1044
V+++D+G G+ QD LF + R A S G G+GL+I R
Sbjct: 501 FYPTSSDGHFYIRVQVKDSGCGIPPQDIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFV 560
Query: 1045 DLYG---WKVSVQPG 1080
+L G W S PG
Sbjct: 561 NLMGGHIWIESEGPG 575
>gi|2981052 (AF051692) histidine protein kinase [Pseudomonas
aeruginosa]
Length = 458
Score = 72.2 bits (174), Expect = 8e-12
Identities = 72/259 (27%), Positives = 120/259 (45%), Gaps = 7/259 (2%)
Frame = +1
Query: 280 LVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAP-HFPDDEVGELARALD 456
LV +GL+LL+G + + P+ L RG + A DE+G+L RA D
Sbjct: 162 LVPAGLALLLGVLLYRRWIVPLGRLRAHGNALRGNDLTARTQAEISRRSDELGDLGRAFD 221
Query: 457 DYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ 636
+ RL E + R+ D+SHELRTPLA ++ A E L+ + +
Sbjct: 222 HMAERLDEHMVLQRQLLRDLSHELRTPLARLQVAAEGTLSAQLLRERLEQEVQGMQQLVD 281
Query: 637 QCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPE 816
+L A + R ++ + + L+++ R + G D V
Sbjct: 282 NTLEL--AWMDTERPVLALEDISIPALWDLLVENARFESGWAAERFRSALPEDCVVRGNL 339
Query: 817 SALSVALGNLIGNAVKYTLEGRVTVRVLEKA------VEIQDTGPGLSEQDAAKLFQRGY 978
+AL+ AL NL+ NA++++ EG V +R+ + + ++D G G++E +F+
Sbjct: 340 NALAQALENLLRNAIRHSPEGGV-IRLHGRREGSCWWLCLEDQGEGVAEHQLETIFRPFT 398
Query: 979 RGTHAGHSQGGGIGLSIVSRLCDLYG 1056
R + A +G G+GLSI R L G
Sbjct: 399 RLSSARTGKGFGLGLSIARRAVVLQG 424
>gi|2507377|sp|P30855|EVGS_ECOLI PUTATIVE SENSOR PROTEIN EVGS
PRECURSOR >gi|1788713 (AE000325) putative sensor for
regulator EvgA [Escherichia coli]
>gi|1799781|dbj|BAA16241| (D90867) PUTATIVE SENSOR
PROTEIN EVGS PRECURSOR (EC 2.7.3.-). [Escherichia coli]
Length = 1197
Score = 71.8 bits (173), Expect = 1e-11
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E +L AL+ ++ + +F A +SHE+RTP++ I G ELL +
Sbjct: 690 ETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVE 749
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGS-----SNVAKVAEQLLDSHRAQLGGKRIE 771
Q LIG +L + + E G+ ++ + + S A K I
Sbjct: 750 AISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIA 809
Query: 772 LILED---KHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE--------- 915
L +H L P+ A L NL+ NA+K+T EG V + ++
Sbjct: 810 LSCSSTFPEHYLVKIDPQ-AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMT 868
Query: 916 IQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ-GGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
I D+G GLS+++ +LF+R Y T AG Q G G+GL I L +S++ G
Sbjct: 869 IMDSGSGLSQEEQQQLFKR-YSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIG 927
Query: 1093 VIATL 1107
T+
Sbjct: 928 TTFTI 932
>gi|6573134|gb|AAF17563.1| (AF201840) sensor protein EvgS1
[Escherichia coli]
Length = 1197
Score = 71.8 bits (173), Expect = 1e-11
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E +L AL+ ++ + +F A +SHE+RTP++ I G ELL +
Sbjct: 690 ETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVE 749
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGS-----SNVAKVAEQLLDSHRAQLGGKRIE 771
Q LIG +L + + E G+ ++ + + S A K I
Sbjct: 750 AISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIA 809
Query: 772 LILED---KHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE--------- 915
L +H L P+ A L NL+ NA+K+T EG V + ++
Sbjct: 810 LSCSSTFPEHYLVKIDPQ-AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMT 868
Query: 916 IQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ-GGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
I D+G GLS+++ +LF+R Y T AG Q G G+GL I L +S++ G
Sbjct: 869 IMDSGSGLSQEEQQQLFKR-YSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIG 927
Query: 1093 VIATL 1107
T+
Sbjct: 928 TTFTI 932
>gi|1731205|sp|Q11155|SEX3_MYCTU SENSOR-LIKE HISTIDINE KINASE SENX3
>gi|1449288|emb|CAB00951| (Z77162) senX3 [Mycobacterium
tuberculosis] >gi|2190479|emb|CAA73957| (Y13628) SenX3
[Mycobacterium tuberculosis]
Length = 410
Score = 71.8 bits (173), Expect = 1e-11
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 12/204 (5%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
R+F A+VSHEL+TP+ + E LL + + D++ L+ LS
Sbjct: 159 RDFVANVSHELKTPVGAMALLAEALLASADDSETVRRFAEKVLIEANRLGDMVAELIELS 218
Query: 676 RNERGHGSSNVAKV-----AEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALG 840
R + N+ V + + H+ IE+ + +L V ++ L AL
Sbjct: 219 RLQGAERLPNMTDVDVDTIVSEAISRHKVAADNADIEVRTDAPSNLRVLGDQTLLVTALA 278
Query: 841 NLIGNAVKYTLEGRVTV-----RVLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGH-- 999
NL+ NA+ Y+ G + R + + D G G++ +D ++F+R +RG A
Sbjct: 279 NLVSNAIAYSPRGSLVSISRRRRGANIEIAVTDRGIGIAPEDQERVFERFFRGDKARSRA 338
Query: 1000 SQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
+ G G+GL+IV + + + V G TL
Sbjct: 339 TGGSGLGLAIVKHVAANHDGTIRVWSKPGTGSTFTL 374
>gi|2190434|emb|CAA73954| (Y13627) SenX3 [Mycobacterium bovis BCG]
Length = 410
Score = 71.8 bits (173), Expect = 1e-11
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 12/204 (5%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
R+F A+VSHEL+TP+ + E LL + + D++ L+ LS
Sbjct: 159 RDFVANVSHELKTPVGAMALLAEALLASADDSETVRRFAEKVLIEANRLGDMVAELIELS 218
Query: 676 RNERGHGSSNVAKV-----AEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALG 840
R + N+ V + + H+ IE+ + +L V ++ L AL
Sbjct: 219 RLQGAERLPNMTDVDVDTIVSEAISRHKVAADNADIEVRTDAPSNLRVLGDQTLLVTALA 278
Query: 841 NLIGNAVKYTLEGRVTV-----RVLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGH-- 999
NL+ NA+ Y+ G + R + + D G G++ +D ++F+R +RG A
Sbjct: 279 NLVSNAIAYSPRGSLVSISRRRRGANIEIAVTDRGIGIAPEDQERVFERFFRGDKARSRA 338
Query: 1000 SQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
+ G G+GL+IV + + + V G TL
Sbjct: 339 TGGSGLGLAIVKHVAANHDGTIRVWSKPGTGSTFTL 374
>gi|2765035|emb|CAA71030| (Y09899) sensory histidine protein kinase
[Calothrix viguieri]
Length = 744
Score = 71.8 bits (173), Expect = 1e-11
Identities = 73/224 (32%), Positives = 110/224 (48%), Gaps = 16/224 (7%)
Frame = +1
Query: 439 LARALDDYSSRLT--EVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXX 612
+ + + + S+RL E + EF A +SHELRTPL I G T+LL K
Sbjct: 495 IRQQVQEQSARLKAEEANRLKDEFLAVLSHELRTPLNPILGWTKLLRAGKLDSAKTDYAL 554
Query: 613 XXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDS---HRAQLGGKRIELILE 783
+ + LIG LL +SR +G S N+A V S QL + + +E
Sbjct: 555 ETIERNAKLQTQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIE 614
Query: 784 DKHDLTVN---APESALSVALGNLIGNAVKYTLE-GRVTVRV----LEKAVEIQDTGPGL 939
D V + L + NL+ NAVK+T GRV +R+ + +++ DTG G+
Sbjct: 615 TVFDPNVGQVLGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECVDSQAEIKVSDTGKGI 674
Query: 940 SEQDAAKLFQ--RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ-PGDSYGVIATLR 1110
S +F+ R T G G+GL+IV L +L+G + + PG+ G T+R
Sbjct: 675 SPDFLPHVFESFRQADATITRKFGGLGLGLAIVRHLVELHGGTIYAESPGEDLGATFTVR 734
>gi|6573136|gb|AAF17564.1|AF201841_1 (AF201841) sensor protein EvgS4
[Escherichia coli]
Length = 1197
Score = 71.4 bits (172), Expect = 1e-11
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E +L AL+ ++ + +F A +SHE+RTP++ I G ELL +
Sbjct: 690 ETRDLINALEVGKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVE 749
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGS-----SNVAKVAEQLLDSHRAQLGGKRIE 771
Q LIG +L + + E G+ ++ + + S A K I
Sbjct: 750 AISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIA 809
Query: 772 LILED---KHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE--------- 915
L +H L P+ A L NL+ NA+K+T EG V + ++
Sbjct: 810 LSCSSTFPEHYLVKIDPQ-AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMT 868
Query: 916 IQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ-GGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
I D+G GLS+++ +LF+R Y T AG Q G G+GL I L +S++ G
Sbjct: 869 IMDSGSGLSQEEQQQLFKR-YSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIG 927
Query: 1093 VIATL 1107
T+
Sbjct: 928 TTFTI 932
>gi|6318167|emb|CAB60253.1| (AJ250862) MrsK2 protein [Bacillus sp.
HIL-Y85/54728]
Length = 479
Score = 71.4 bits (172), Expect = 1e-11
Identities = 68/215 (31%), Positives = 112/215 (51%), Gaps = 27/215 (12%)
Frame = +1
Query: 436 ELARALDDYSSRLT------EVVQRDRE-FNADVSHELRTPLAVIRGATELLLTKPEMDP 594
EL +AL + +S L E++++ RE + A VSH+L+TPL+VI+G T +LL+ E +
Sbjct: 219 ELMQALSELTSTLQRNKAERELLEKTREEWMAGVSHDLKTPLSVIKGYT-VLLSSNEYEW 277
Query: 595 KXXXXXXXXXXAEQQCS-------DLIGALLLLSRNERGH-GSSNVAKVAEQLLDSHRAQ 750
+ E++ D L + + H NV KV L+ +
Sbjct: 278 ENQQVRDFSLIMEERVEYMEKLIEDFNLTFQLKNESLPIHLEEKNVVKVIHDTLEKMKLL 337
Query: 751 LGGKRIELILEDKHD-LTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVL--------E 903
+ LE H+ + N E L A+ NLI N +K+ G +L E
Sbjct: 338 PESENKRFALESSHNKILFNMDERYLKRAVENLIANCIKHNPPGTKIKVILYQDVLHDNE 397
Query: 904 KAVEIQDTGPGLSEQDAAKLFQRGYRGTHA-GHSQGGGIGLSIVSRLCDLYGWKVSV--Q 1074
+ I+D G G+ E+ LF R +RGT A ++ G G+G++I ++ +G + + Q
Sbjct: 398 IQIIIEDDGIGMDEETVECLFDRYFRGTSATSNNSGTGLGMAIAQQIIKAHGGNIDIYSQ 457
Query: 1075 PG 1080
PG
Sbjct: 458 PG 459
>gi|6826916|gb|AAA87563.3| (U33326) histidine protein kinase sensor
CorS [Pseudomonas syringae pv. glycinea]
Length = 526
Score = 71.4 bits (172), Expect = 1e-11
Identities = 66/208 (31%), Positives = 107/208 (50%), Gaps = 18/208 (8%)
Frame = +1
Query: 469 RLTEVVQRDREFN-------ADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXX 627
+L +QR R+ N A SH+L PL +G L +D +
Sbjct: 230 QLRIALQRARQSNTARCQLLAGASHDLHQPLQA-QGFFLAALAGSPLDSQQRQLLARART 288
Query: 628 AEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQ-LLDSHRAQLG----GKRIELILEDKH 792
A + +D++ LL LSR E G + A Q LLD +L GK + D
Sbjct: 289 AVKTTTDMLNTLLELSRIELGALQPTLHVFALQPLLDKLEMELAPLANGKGLSYRTLDTE 348
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLE----KAVEIQDTGPGLSEQDAAK 960
L+++ P + L + L NLIGNA++YTL G V + +E+ DTG G++ Q +
Sbjct: 349 LLSLSDP-TLLELILRNLIGNAIRYTLRGGVLIACQRCHGYLQIEVVDTGVGIALQHQQE 407
Query: 961 LFQRGYRGTH--AGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
+F+ ++ H + +G G+GL+IV+RL L G +++ + +G
Sbjct: 408 IFRDFHQLDHPTRNNHEGLGLGLAIVARLARLLGHPLTLASREGHG 453
>gi|2126373|pir||I40646 sensor-like protein - Coxiella burnetii
>gi|460629 (U07186) sensor-like protein [Coxiella
burnetii] >gi|1093607|prf||2104273A sensor-like protein
[Coxiella burnetii]
Length = 425
Score = 71.0 bits (171), Expect = 2e-11
Identities = 62/251 (24%), Positives = 116/251 (45%), Gaps = 10/251 (3%)
Frame = +1
Query: 277 VLVFSGLSLLIGWWSASKVMKPVSDLAKLL-RTYRGQTTNPKPLAPHFPDDEVGELARAL 453
++ F + +LI WS ++ +P+ + + R T P P+ V E ARA+
Sbjct: 150 IVAFGFILILI--WSINRFTRPIENFRRAAERLSMDLNTQPVPIDG---PSVVQEAARAM 204
Query: 454 DDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE 633
+ R+ ++++ + A +SH+LRTP+ T + L +D E
Sbjct: 205 NRMQQRIQDLIRNRTQMLAAISHDLRTPI------TRMKLRAQFLDNSTTRNALVKDLNE 258
Query: 634 QQCSDLIGALLLLSRNERGHGS-------SNVAKVAEQLLDSHRAQLGGKRIELILEDKH 792
+ +I L +R++ + S V + E + D G I+ +
Sbjct: 259 MEV--MINETLSFARDDFADNAKVNLDLVSLVCSLVESMQDM------GYNIQFHSHPQR 310
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE--IQDTGPGLSEQDAAKLF 966
+ + SAL A NL+ NA++Y V ++ + V+ I+D GPG++E++ ++F
Sbjct: 311 -IKILGRASALKRAFTNLLNNAIRYAKNVNVRIQWRQNRVKVLIEDDGPGIAEKELEQVF 369
Query: 967 QRGYRGTHAGHSQGGGIGLSI 1029
+ YRG H+ GG+GL +
Sbjct: 370 EPFYRGEHSRSRDTGGVGLGL 390
>gi|421019|pir||JU0221 EvgS protein - Escherichia coli
>gi|216554|dbj|BAA03108| (D14008) EvgS [Escherichia coli]
Length = 1197
Score = 71.0 bits (171), Expect = 2e-11
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E +L AL+ ++ + +F A +SHE+RTP++ I G ELL +
Sbjct: 690 ETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSDSGLSKEQRVE 749
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGS-----SNVAKVAEQLLDSHRAQLGGKRIE 771
+Q LIG +L + + E G+ ++ + + S A K I
Sbjct: 750 AISLAYATKQSVLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIA 809
Query: 772 LILED---KHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE--------- 915
L +H L P+ A L NL+ NA+K+T EG V + ++
Sbjct: 810 LSCSSTFPEHYLVKIDPQ-AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMT 868
Query: 916 IQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ-GGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
I D+G GL +++ +LF+R Y T AG Q G G+GL I L +S++ G
Sbjct: 869 IMDSGSGLLQEEQQQLFKR-YSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIG 927
Query: 1093 VIATL 1107
T+
Sbjct: 928 TTFTI 932
>gi|3123666|emb|CAA06723.1| (AJ005829) ethylene receptor [Pisum
sativum]
Length = 635
Score = 71.0 bits (171), Expect = 2e-11
Identities = 72/227 (31%), Positives = 115/227 (49%), Gaps = 35/227 (15%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALD + +F A ++HE+RTP+ I + LLL + E+ P+
Sbjct: 322 DQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLL-ETELTPEQR 380
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G G N+ V E++++ + K++
Sbjct: 381 VMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMGKINLHGVLEEVIELIKPIASVKKL 440
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
+ L DL NA L L N++GNAVKYT EG V++R
Sbjct: 441 PITLILAPDLPDNAIGDVKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPE 500
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAG---HSQGGGIGLSIVSRL 1041
V+++D+G G+ QD LF + + + +G S G G+GL+I R
Sbjct: 501 FYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTK-FTQSQSGAGRSSSGSGLGLAICKRF 559
Query: 1042 CDLYGWKVSVQ-PGDSYGVIAT 1104
+L G + ++ G G AT
Sbjct: 560 VNLMGGHIWMESEGPDKGSTAT 581
>gi|466195|sp|P35164|RESE_BACSU SENSOR PROTEIN RESE
>gi|629125|pir||S45560 hypothetical protein X18 -
Bacillus subtilis >gi|410142 (L09228) ORFX18 [Bacillus
subtilis] >gi|2634746|emb|CAB14243| (Z99116)
two-component sensor histidine kinase [Bacillus subtilis]
Length = 589
Score = 71.0 bits (171), Expect = 2e-11
Identities = 62/223 (27%), Positives = 115/223 (50%), Gaps = 17/223 (7%)
Frame = +1
Query: 403 LAPHFPDDEV-GELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELL--- 570
++P + + V G +A D R + ++ D F A+VSHELRTP+++++G +E +
Sbjct: 336 MSPLYAESHVRGAVAVLRDMTEERRLDKLRED--FIANVSHELRTPISMLQGYSEAIVDD 393
Query: 571 LTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKV-AEQLLDSHRA 747
+ E D K + L+ LL L+R E GH + K+ + L+
Sbjct: 394 IASSEEDRKEIAQIIYDESL--RMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIR 451
Query: 748 QLGGKRIELILEDKHDLTVNA-----PESALSVALGNLIGNAVKYTLEG---RVTVRVLE 903
+ G E + HD+++ E + NLI NA+++T G ++V ++
Sbjct: 452 KFSGVAKEKNIALDHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVK 511
Query: 904 KA--VEIQDTGPGLSEQDAAKLFQRGYRGTHA--GHSQGGGIGLSIVSRLCDLYGWKVSV 1071
++I+D+G G+ E+D +F+R Y+ A G G+GL+IV + + + ++V
Sbjct: 512 DGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITV 571
>gi|1805446|dbj|BAA09008| (D50453) homologue of alkaline phosphatase
synthesis sensor protein PhoR of B. subtilis [Bacillus
subtilis] >gi|2632677|emb|CAB12184| (Z99106) similar to
two-component sensor histidine kinase [YclJ] [Bacillus
subtilis]
Length = 473
Score = 70.2 bits (169), Expect = 3e-11
Identities = 61/229 (26%), Positives = 119/229 (51%), Gaps = 20/229 (8%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTE-------VVQRDREFNADVSHELRTPLAVIRGATELLLTKP 582
DE+G LA + + +L + + +R R+F ADVSHEL+TPL I G E L +
Sbjct: 218 DEIGVLASDFNIMAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHT 277
Query: 583 EMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSN-----VAKVAEQLLDSHRA 747
+ K ++ L+ L + + N + +V E + + +
Sbjct: 278 IPEDKKDKCFSLISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQ 337
Query: 748 QLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVL----EKAVE 915
Q K+ +L+++ + + V+A L N+ N++++T G + +R + E +E
Sbjct: 338 QAEEKQNKLMIQVEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETIIE 397
Query: 916 IQDTGPGLSEQDAAKLFQRGYRG----THAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGD 1083
I+DTG G+ ++D +++R Y+ T+ + + G+GLSIV +L +++ V ++ +
Sbjct: 398 IEDTGIGIPKEDIEHIWERFYKADISRTNTAYGE-YGLGLSIVRQLVEMHQGTVEIKSEE 456
Query: 1084 SYGVIATLR 1110
G +R
Sbjct: 457 GKGTKFIIR 465
>gi|2822308|gb|AAC82814.1| (AF016485) ORF H0337 [Halobacterium sp.
NRC-1]
Length = 917
Score = 70.2 bits (169), Expect = 3e-11
Identities = 64/224 (28%), Positives = 101/224 (44%), Gaps = 7/224 (3%)
Frame = +1
Query: 421 DDEVGELARALDDYSSRLTEVVQ----RDR--EFNADVSHELRTPLAVIRGATELLLTKP 582
D E A L D + RL Q RDR EF + VSH+LR PL V G EL +
Sbjct: 687 DGEFHGTAGVLRDITDRLERERQLKRERDRLDEFASVVSHDLRNPLNVAEGRLELAMENC 746
Query: 583 EMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGK 762
E + + LI +L L+R G + ++A+ L+++ +
Sbjct: 747 ESEHHDSVAQSL-----DRMESLIDDVLSLARAGEAVGETEPVELAD-LVEACWQTVETA 800
Query: 763 RIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVLEKAVEIQDTGPGL 939
L++E + T+ A S L NL+ NAV++ E +T+ L ++D G G+
Sbjct: 801 SAGLVVET--ETTIQADPSRLQQLFENLLRNAVEHGGEDVTITIGDLPDGFYVEDDGQGI 858
Query: 940 SEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
E + + GY + G G+GLSIV + + +GW++ V G
Sbjct: 859 PEDERGNVLDAGYSTA----ADGTGLGLSIVREVAEAHGWEIEVTESSDGG 905
>gi|2947211 (AF012539) sensory protein BvrS [Brucella abortus]
Length = 601
Score = 69.9 bits (168), Expect = 4e-11
Identities = 74/285 (25%), Positives = 135/285 (46%), Gaps = 21/285 (7%)
Frame = +1
Query: 220 DMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPK 399
D+ + ++ ER A++ V S + +++ + AS + P+ L+ R N
Sbjct: 276 DIDKIVQAERM---AVFRVFGVVSAVMVILSLFLASTIANPLRKLSAAADRVRHGVKNRV 332
Query: 400 PLAPHFPD--DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELL- 570
+ P F + DEVG L+ ++ D + L ++ F ADVSHEL+ PL +R A E L
Sbjct: 333 EI-PDFSERQDEVGHLSTSIRDMTDALYTRIEAIESFAADVSHELKNPLTFVRSAVETLP 391
Query: 571 LTKPEMDPKXXXXXXXXXXA--EQQCSDLIGALLLLSRNERGH-GSSNVAKVAEQLLDSH 741
L K + K ++ +D+ A L + R H ++ K+ L+ +
Sbjct: 392 LAKTDESRKRLLDVIQHDVRRLDRLITDISDASRLDAELAREHIDRVDMKKLLTSLVTAA 451
Query: 742 RAQLGGK-RIELILED------KHDLTVNAPESALSVALGNLIGNAVKYTLE--GRVTVR 894
R K E++ K V + L + NLI NA + + GR+ V
Sbjct: 452 REVRRNKVGTEIVFNTGKLPTGKKGFYVAGHDLRLGQVVSNLIENARSFVPDDTGRIVVT 511
Query: 895 VLEKA----VEIQDTGPGLSEQDAAKLFQRGY--RGTHAGHSQGGGIGLSIVSRLCDLYG 1056
+ + + ++D GPG+ ++ ++F+R Y R Q G+GLSI ++ + +G
Sbjct: 512 LAGEGNRLRILVEDNGPGIPIENIERIFERFYTDRPASEAFGQNSGLGLSISRQIIEAHG 571
Query: 1057 WKVSVQ 1074
++ +
Sbjct: 572 GALTAE 577
>gi|2072712|emb|CAB08346| (Z95121) mtrB [Mycobacterium tuberculosis]
Length = 567
Score = 69.9 bits (168), Expect = 4e-11
Identities = 66/253 (26%), Positives = 126/253 (49%), Gaps = 26/253 (10%)
Frame = +1
Query: 271 ISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTY-RGQTTNPKPLAPHFPDDEVGELAR 447
+ +++ +G++LL+ + +V+ PV +++ + G + P+ +D++ LA
Sbjct: 221 VLLVLLAGIALLV----SRQVVVPVRSASRIAERFAEGHLSERMPVRG---EDDMARLAV 273
Query: 448 ALDDYSSRLTEVVQR-------DREFNADVSHELRTPLAVIRGATELLLT-KPEMDPKXX 603
+ +D + L+ + + R F +DVSHELRTPL +R A +L+ ++DP
Sbjct: 274 SFNDMAESLSRQIAQLEEFGNLQRRFTSDVSHELRTPLTTVRMAADLIYDHSADLDPTLR 333
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLD------------SHRA 747
+ L+ LL +SR++ G VA+++ + +D H A
Sbjct: 334 RSTELMVSELDRFETLLNDLLEISRHDAG-----VAELSVEAVDLRTTVNNALGNVGHLA 388
Query: 748 QLGGKRIELILE-DKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AV 912
+ G IEL+++ + + L NLI NA+ + V +R+ AV
Sbjct: 389 EEAG--IELLVDLPAEQVIAEVDARRVERILRNLIANAIDHAEHKPVRIRMAADEDTVAV 446
Query: 913 EIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSI 1029
++D G GL + +F R +R + + GG GL +
Sbjct: 447 TVRDYGVGLRPGEEKLVFSRFWRSDPSRVRRSGGTGLGL 485
>gi|3367759|emb|CAA20084| (AL031155) putative two-component sensor
[Streptomyces coelicolor]
Length = 459
Score = 69.9 bits (168), Expect = 4e-11
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 13/222 (5%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E+ L +LD R+ +++ +R+ ++SHELRTPL+ I + T+P +
Sbjct: 227 ELTRLGTSLDAILDRIRTLLRHERQLTGELSHELRTPLSRIIAELDWWQTRPRTADQTHA 286
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILED 786
A Q + LL + G + A ++L + R R+ +L+
Sbjct: 287 THKVIAEAAQSMRTICDTLL-----DDARGGAPTAPGTAEILPTLR------RLTEVLDA 335
Query: 787 KHDLTVNA---------PESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDT 927
LTV A P + L + L+ NA +Y ++TV +E+ D
Sbjct: 336 PSHLTVTADGPPLEAGVPPALLERIISPLLTNASRYA-RSKITVHAYRAPDGVRIEVIDD 394
Query: 928 GPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
GPG+ A +LF+ G R G G+GL + RL G +++ P + G
Sbjct: 395 GPGVPPPFAGQLFEPGRRADPGDGHSGAGLGLPLARRLARSAGGEMTYDPDHTPG 449
>gi|1652120|dbj|BAA17045| (D90902) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 661
Score = 69.5 bits (167), Expect = 5e-11
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 13/213 (6%)
Frame = +1
Query: 469 RLTEVVQRDREFNADVSHELRTPLAVIRGATELL--LTKPEMDPKXXXXXXXXXXAEQQC 642
R E+ Q EF +SH+ RTPL I A ++ D K +Q
Sbjct: 430 REKELNQLRSEFITAISHQFRTPLTTISCAASIMGKFEAKLTDEKRVQYIESILRGAKQI 489
Query: 643 SDLIGALLLLSRNERGHG----SSNVAKVAEQLLDSHRAQLGGKRIELI--LEDKHDLTV 804
+LIG ++ ++ N+ ++ + ++D +I L K L V
Sbjct: 490 DELIGDIITINLNQEEIEPVLVKGSLIDFCQDIIDKTEYLSYPYKINFCACLSSKTRLAV 549
Query: 805 NAPESALSVALGNLIGNAVKY-----TLEGRVTVRVLEKAVEIQDTGPGLSEQDAAKLFQ 969
L L +L+ N +KY T++ + E EIQD G G+ E + K+F+
Sbjct: 550 KFDPVLLKPVLTHLLANGIKYSPTILTIDLLLLESPEEIIFEIQDYGIGIPETELEKIFE 609
Query: 970 RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
RG++ GH G GIGL+I +L YG ++ ++ G +L
Sbjct: 610 PFQRGSNVGHIAGIGIGLTIARKLITFYGGRIEIKSELGQGTTVSL 655
>gi|1651879|dbj|BAA16806| (D90900) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 834
Score = 69.1 bits (166), Expect = 7e-11
Identities = 62/190 (32%), Positives = 99/190 (51%), Gaps = 31/190 (16%)
Frame = +1
Query: 502 FNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRN 681
F A++SHELR+PL I G ++L+L + + + + +LI +L S+
Sbjct: 368 FVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINNILDFSKI 427
Query: 682 ERGHGSSN-----VAKVAEQLLDSHRAQLGGKRIELILEDKHDLT--VNAPESALSVALG 840
E G N + + + L D + + IELI HDL V E L L
Sbjct: 428 EAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIKLRQILL 487
Query: 841 NLIGNAVKYTLEGRVTVRVLEKAVE----------------------IQDTGPGLSEQDA 954
NL+ NA+K+T EG V + + E I+DTG G+SE +
Sbjct: 488 NLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVEL 547
Query: 955 AKLFQRGYRGTHAGHS--QGGGIGLSIVSRLCDLYGWKVSV 1071
+ LF+ + T +G + +G G+GL+I + L G ++V
Sbjct: 548 SHLFE-AFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINV 587
>gi|2635818|emb|CAB15311| (Z99120) similar to two-component sensor
histidine kinase [YvrH] [Bacillus subtilis]
>gi|2635834|emb|CAB15326| (Z99121) similar to
two-component sensor histidine kinase [YvrH] [Bacillus
subtilis] >gi|2832807|emb|CAA11731.1| (AJ223978) putative
sensory protein kinase, YvrG [Bacillus subtilis]
Length = 573
Score = 69.1 bits (166), Expect = 7e-11
Identities = 66/229 (28%), Positives = 120/229 (51%), Gaps = 26/229 (11%)
Frame = +1
Query: 433 GELARALDDYSSRLTEVVQRDR-----------EFNADVSHELRTPLAVIRGATELLLTK 579
GE+ ++D +LTE ++RD+ E+ A +SH+L+TPL+ I G + +L +K
Sbjct: 323 GEIFESMD----QLTETLRRDKRNREKIQATREEWIAGLSHDLKTPLSSIYGYSMMLESK 378
Query: 580 P-EMDPKXXXXXXXXXXAEQQ-CSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDS 738
+ P+ + + S LI L L R + +++ + +++
Sbjct: 379 QYDWSPEEGEEMGQVVREKSEYMSKLIEDLNLTYRLKNDALPIERKLTSLIPFFKNVIED 438
Query: 739 HRAQ--LGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK-- 906
+ G I + +++H + E+ L NL+GNAVK+ +G +LE+
Sbjct: 439 FKKNPFSEGYDISFVSKEEH-IEFALDEAWFRRILENLLGNAVKHNGKGTEIQVILEQTK 497
Query: 907 ---AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGG-GIGLSIVSRLCDLYGWKVSVQ 1074
+++++D G G+ E+ LF R YRGT+ S G G+GL+I L L+ + V
Sbjct: 498 NHISLKVKDNGKGMDEETITHLFNRYYRGTNTKDSTAGTGLGLAIAKELVHLHNGTIHVN 557
Query: 1075 PGDSYGVIATLRFFK 1119
+ G + T+ F K
Sbjct: 558 SRTNIGTVITILFKK 572
>gi|6808397|emb|CAB70634.1| (AL137242) probable two-component sensor
kinase [Streptomyces coelicolor A3(2)]
Length = 478
Score = 69.1 bits (166), Expect = 7e-11
Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 11/283 (3%)
Frame = +1
Query: 262 ALYISVLVFSGLSLLIGW--WSASK-VMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEV 432
AL + ++ F L ++ W W ++ ++PV + + + + + DEV
Sbjct: 184 ALTVMLIGFPLLLAVVAWVTWLVTRRALRPVEGIRREMAAITASEDLARRVPVPGTHDEV 243
Query: 433 GELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXX 612
LA ++ + L V+R R F AD SHELR+P+A +R E+ PE+
Sbjct: 244 ARLATTTNETLAALESSVERQRGFVADASHELRSPIASLRTQLEVAAAHPEL-----LDL 298
Query: 613 XXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKH 792
+ L LLLL+R + G ++ A+V L A+ G+ + D+
Sbjct: 299 DGAVADTVRLQRLAADLLLLARLDAGERPAD-ARVDLAALAREAAE--GRAGVRVRGDEG 355
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK------AVEIQDTGPGLSEQDA 954
++ L L NL+ NA ++ R V V + V + D G G+ D
Sbjct: 356 VVSAAGSRGQLGRVLANLLDNAERH---ARSVVEVSVRWDGDTALVAVTDDGEGVPAADR 412
Query: 955 AKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
++F+R R + G G+GL+I + +G ++V + G + LR
Sbjct: 413 ERIFERFVRLDDARSRDDGGAGLGLAIARDVAVRHGGTLTVHDAPAGGALFELR 466
>gi|4768855|gb|AAD29649.1|AF124757_9 (AF124757) phosphate regulon
sensor protein PhoR [Zymomonas mobilis]
Length = 421
Score = 69.1 bits (166), Expect = 7e-11
Identities = 64/231 (27%), Positives = 114/231 (48%), Gaps = 16/231 (6%)
Frame = +1
Query: 415 FPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDP 594
+P +E L D ++ LTE V+ D F A+ SHELRTPLA + G E L +
Sbjct: 167 YPLNEEQRLILLRDQSTAHLTEQVRID--FVANTSHELRTPLATLSGFIETLEDDDVIKE 224
Query: 595 KXXXXXXXXXXAEQ--QCSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQL 753
+ A + + +L+ L+ LSR E G H +++ V E+++ + +A
Sbjct: 225 RDTRHHFLSIMAREAKRMQNLVDDLMSLSRIEAGKFSLPHDIVHMSPVVEEVVSNIQASG 284
Query: 754 GGKRIELILEDK-HDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA------V 912
K ++ LE+ ++ + L+ L N+IGNA+KY + + L+ +
Sbjct: 285 QAKATQITLENHLSSDSLQGDRAELTQLLYNIIGNALKYGRKDGIIKVALDNTDDHRIKL 344
Query: 913 EIQDTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDS 1086
I D G G+ +L +R YR + + G G+GL+IV ++ + + ++ +
Sbjct: 345 AIADEGDGIPYHHIPRLTERFYRVDNSRSRALGGTGLGLAIVKQIVEHHRGELLIDSLPG 404
Query: 1087 YGVIATL 1107
G T+
Sbjct: 405 KGTTVTV 411
>gi|461403 (L29642) sensor kinase [Pseudomonas fluorescens]
Length = 575
Score = 68.7 bits (165), Expect = 9e-11
Identities = 69/210 (32%), Positives = 108/210 (50%), Gaps = 25/210 (11%)
Frame = +1
Query: 445 RALDDYSSRLTEVVQRDR---EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
R D+ + +L E EF A +SHEL+ PL +I+ ELL P
Sbjct: 182 RMQDEQNQKLMETQTHSHLKDEFFAVMSHELKHPLNLIQLNAELLRRLPTTKAAAPALKA 241
Query: 616 XXXXAEQQCSD--LIGALLLLSRNERGH-----GSSNVAKVAEQ-----LLDSHRAQLGG 759
E S +I LL + R G ++ ++ + L + HR Q+
Sbjct: 242 VNTICEAVSSQARIIDDLLDVRRLRTGKLKLKKQPVDLGRILQDIHTVVLSEGHRCQV-- 299
Query: 760 KRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYT----LEGRVTVRVLEKA-VEIQD 924
+++ L + L ++A + L + NL+ NA+K+T L + RV +KA V++ D
Sbjct: 300 -TLQVPLPPQPPLMIDADATRLEQVIWNLVNNALKFTPANGLVQLIAQRVEDKAHVDVID 358
Query: 925 TGPGLSEQDAAKLFQ-----RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+G GL+E+D K+F GTH G GIGLS+V +L + +G VSVQ
Sbjct: 359 SGVGLAEEDQNKVFDLFGQAANQHGTH--QRDGLGIGLSLVRQLVEAHGGSVSVQ 411
>gi|2951933 (AF024619) hybrid histidine kinase homolog [Pseudomonas
fluorescens]
Length = 983
Score = 68.3 bits (164), Expect = 1e-10
Identities = 63/270 (23%), Positives = 120/270 (44%), Gaps = 13/270 (4%)
Frame = +1
Query: 289 SGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSS 468
SG ++ +S + + ++A LL R T+ K + E+ L+
Sbjct: 123 SGEQTIVTDYSLTPLRDNHGEVAFLLAEGRNITSKKKY------EQEIARKNSELEKLVE 176
Query: 469 RLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSD 648
++ ++ ++ F +++SHELRTPL++I G + +L E +
Sbjct: 177 QIRKLDEQKSRFFSNLSHELRTPLSLILGPVDEMLVSSEFSERHDTNLASIRRNAVTLLR 236
Query: 649 LIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAP 813
+ LL L++ + G + ++ + E + A +RI + + V A
Sbjct: 237 HVNELLDLAKVDAGKLQLAYERIDIKGLVEDIAAHFEAHAKQRRIRCAVLSPGPILVEAD 296
Query: 814 ESALSVALGNLIGNAVKYTLE-GRVTVRV-----LEKAVEIQDTGPGLSEQDAAKLFQRG 975
+ + NL+ NA T + GR++ RV + + D+GPG+ + ++F+R
Sbjct: 297 PERIGHVVFNLMANAFNATPDGGRISCRVEIGRGNRCLLTVSDSGPGIPPEMRQRIFERF 356
Query: 976 YRG--THAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
+G H G G+GL+IV +L+G V+V G I
Sbjct: 357 QQGLEDHGQARAGSGLGLAIVKEFIELHGGTVTVGEAPGSGAI 399
Score = 49.6 bits (116), Expect = 5e-05
Identities = 60/232 (25%), Positives = 105/232 (44%), Gaps = 19/232 (8%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDR--EFNADVSHELRTPLAVI----RGATELLLTKPE 585
DE L+ S L V++ E A ++HEL PLA + L + P
Sbjct: 726 DEQKRAEHELERARSELARVMRVTAMGELVASITHELNQPLAAMVANSHACRRWLNSNPP 785
Query: 586 MDPKXXXXXXXXXXAEQQCSDLIGAL-LLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGK 762
+ Q+ ++++ L + + R E H N++ V E++LD R L +
Sbjct: 786 NLKEGVASVEAVVRDSQRAAEVVLRLRMFMRRGEIQHEPLNLSGVVEEVLDYVRESLVMQ 845
Query: 763 RIELILEDKHDL-TVNAPESALSVALGNLIGNAVKYTLEG-----RVTVRVLEKA----- 909
I L DL V A L + NL+ NA++ R+ +R+
Sbjct: 846 SISLETTLPTDLPVVLADRVQLQQVVLNLLLNAIEAIQARSPNVPRLKLRICRSPDNGDL 905
Query: 910 -VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDS 1086
+E++D G G+ A ++F+ Y SQG G+GL+I + + +G ++++ P
Sbjct: 906 QLEVEDNGCGVPALQAERIFEPFY----TTKSQGMGMGLAICRTILEAHGGQLNLLPPSD 961
Query: 1087 YGVIATLRFFK 1119
G A+ F+
Sbjct: 962 SGSAASGSVFQ 972
>gi|3395538|emb|CAA20157| (AL031182) putative two-component sensor
[Streptomyces coelicolor]
Length = 436
Score = 68.3 bits (164), Expect = 1e-10
Identities = 75/259 (28%), Positives = 129/259 (48%), Gaps = 15/259 (5%)
Frame = +1
Query: 295 LSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRL 474
+++L+ A + P+ DL++ R + + A H E+ ++AR ++ L
Sbjct: 157 VAVLVARRQARVLAAPLEDLSRHCRAVTAGDLSAR--AAHSSVAEIDQVARTHNEMLHSL 214
Query: 475 TEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLI 654
TE+++R+R+F A+ SH+LRTPL ++ E L + + D ++ +
Sbjct: 215 TELLRRERDFTANASHQLRTPLTGLQLTLEAGLAQDD-DAGTRPALQEALATTRRLHRTV 273
Query: 655 GALLLLSRNERGHG----SSNVAKVAEQLLDSHRAQLG-----GKRIEL-ILEDKHDLTV 804
+L LS R HG + V++ L ++ G G+R+E LE D+ V
Sbjct: 274 EEVLRLS---RFHGLPRRPAPDTPVSQLLRETEERWHGLFARDGRRLEAGALETGDDIRV 330
Query: 805 -NAPESALSVALGNLIGNAVKYTLEGRVTVRV----LEKAVEIQDTGPGLSEQDAAKLFQ 969
AP + + LG L+ NA + GR TVR+ L +AV + G + +A++LF
Sbjct: 331 LGAPVTEI---LGVLLENA---RVHGRGTVRLTARDLGEAVAFDVSDEGAVDGEASRLFD 384
Query: 970 RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSV 1071
RG G +G GIGLS+ L G ++S+
Sbjct: 385 RG----RTGAGEGSGIGLSLARDLALSLGGRLSL 414
>gi|1237202|emb|CAA65612| (X96869) histidine kinase [Dictyostelium
discoideum]
Length = 1670
Score = 68.3 bits (164), Expect = 1e-10
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Frame = +1
Query: 478 EVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIG 657
E + +F ++SHELRTP I G ++LLL + + + S LI
Sbjct: 1038 EATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTNTQRDNIDSIKRSTDSLIS-LIN 1096
Query: 658 ALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVN----A 810
+L S+ E G + S + + E++LDS K I+LI D V
Sbjct: 1097 DILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVPPVIFG 1156
Query: 811 PESALSVALGNLIGNAVKYTLEGRVTVRV---------LEKAVEIQDTGPGLSEQDAAKL 963
++L L NL+GNAVK+T G V + + + ++D+G G+ E ++
Sbjct: 1157 DRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSGIGIPENKIEQI 1216
Query: 964 FQ--RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRFF 1116
F G+ + G G+GLS L L G + V+ GD G T +F
Sbjct: 1217 FVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGTTFWF 1269
>gi|3123890 (AF031552) sensor kinase [Vibrio cholerae]
Length = 1146
Score = 67.9 bits (163), Expect = 1e-10
Identities = 60/216 (27%), Positives = 103/216 (46%), Gaps = 12/216 (5%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E+ E +AL + + + V+ F A VSHELRTP+A + G E+L ++ +
Sbjct: 600 ELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSESQLL 659
Query: 607 XXXXXXXAEQ---QCSDLIG-ALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIE- 771
AE+ +D++ + + + + G N+A LL A K IE
Sbjct: 660 LTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEF 719
Query: 772 -LILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRV----LEKAVEIQDTGPG 936
+I L N + + NL+ NA+K+T +GRV ++ + ++DTG G
Sbjct: 720 DVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEMLTIAVEDTGCG 779
Query: 937 LSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+++ LF + T G G+G+SIV+ L +L K+ V+
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVK 827
>gi|1046225 (U21952) ethylene response sensor [Arabidopsis thaliana]
>gi|2623308|gb|AAB86454.1| (AC002409) ethylene response
sensor (ERS) [Arabidopsis thaliana]
>gi|1584365|prf||2122405A ERS gene [Arabidopsis thaliana]
Length = 613
Score = 67.9 bits (163), Expect = 1e-10
Identities = 67/211 (31%), Positives = 108/211 (50%), Gaps = 34/211 (16%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALD V +F A ++HE+RTP+ I + LLL + E+ P+
Sbjct: 321 DQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMHAIISLSSLLL-ETELSPEQR 379
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G + ++ + E+++ + K++
Sbjct: 380 VMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQAIFEEVISLIKPIASVKKL 439
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTV----------------- 891
L DL A E L + N++GNAVK+T EG +++
Sbjct: 440 STNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYISIIASIMKPESLQELPSPE 499
Query: 892 --RVLEKA-----VEIQDTGPGLSEQDAAKLFQRGYR---GTHAGHSQGGGIGLSIVSRL 1041
VL + V+++DTG G+ QD LF + + GT HS GGG+GL++ R
Sbjct: 500 FFPVLSDSHFYLCVQVKDTGCGIHTQDIPLLFTKFVQPRTGTQRNHS-GGGLGLALCKRF 558
Query: 1042 CDLYG 1056
L G
Sbjct: 559 VGLMG 563
>gi|3282775|gb|AAC25064.1| (AF043352) histidine protein kinase PhoR
[Vibrio cholerae]
Length = 433
Score = 67.9 bits (163), Expect = 1e-10
Identities = 60/188 (31%), Positives = 97/188 (50%), Gaps = 16/188 (8%)
Frame = +1
Query: 466 SRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEM--DPKXXXXXXXXXXAEQQ 639
++L ++ R F A+VSHELRTP+ V++G E + P++ P +
Sbjct: 197 TQLKQLEGMRRNFFANVSHELRTPMTVLQGYLE-MTEDPDVLAGPMWSKAHGVMTEQLNR 255
Query: 640 CSDLIGALLLLSRNERGHGSSNVAKVAE--------QLLDSHRAQLGGKRI-ELILEDKH 792
+ L+ LL LS+ E +S + ++ + ++L+ L G+ + +L E
Sbjct: 256 MNSLVNQLLTLSKIE----ASPMVELDQVFDVPAMLEVLEKEAVSLSGEALHKLHFEVDK 311
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVLE----KAVEIQDTGPGLSEQDAA 957
L V A E L A+ NL+ NAVKYT G ++ VR +E++D G G+ Q
Sbjct: 312 SLKVLADEDQLRSAISNLVYNAVKYTPPGAQIDVRWYRTGKGACLEVEDKGEGIEPQHLH 371
Query: 958 KLFQRGYRGTHAGHSQGGGIGLSI 1029
+L +R YR A GG GL +
Sbjct: 372 RLTERFYRVDKARSRDTGGSGLGL 395
>gi|602402 (U07746) EnvZ [Xenorhabdus nematophilus]
Length = 342
Score = 67.5 bits (162), Expect = 2e-10
Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 23/276 (8%)
Frame = +1
Query: 268 YISVLVFSGLSLLIG-WWSASKVMKPVSDLAK--LLRTYRGQTTNPKPLAPHFPDDEVGE 438
YI + VF+ SL+ +W + K + L +G+T P E G
Sbjct: 51 YIFISVFAASSLVFAAFWRYLHLQKQSLRAMQKAALEMGKGRTAASLP--------ETGT 102
Query: 439 LA-RALDDYSSRLTEVVQRDRE----FNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
L RAL ++++E ++ A VSH+LRTPL IR ATE+ M K
Sbjct: 103 LTIRALTGVFNQMSERLKLQENDQAVLMAGVSHDLRTPLTRIRLATEM------MQGKDN 156
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSS--NVAKVAEQLLDSHRA----QLGGKR 765
++C+ +I + R + + ++ ++ E +++ Q G
Sbjct: 157 FLAESIHRDIEECNAIIDQFIDYQRAGQNMPLTCCDLNELLEAVIELETVIGAEQHGEVN 216
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE------IQDT 927
IE L D H + + A ++ A+ N+ NA +Y G +R+ E ++D
Sbjct: 217 IEHCLSD-HPIFILANPLSIKRAIANMFTNAQRY---GNGWIRISSGTTEAFGWFQVEDD 272
Query: 928 GPGLSEQDAAKLFQ---RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGV 1095
G G+++++A LFQ +G R H H+ G G+GLSI+ R+ D + + V+ + G+
Sbjct: 273 GSGMTKEEADVLFQPFTQGKRFRHVRHNSGAGLGLSIIRRIIDSHEGYIEVRESEKGGL 331
>gi|2073556 (U62023) sensor/regulator protein RpfA [Erwinia carotovora
subsp. carotovora]
Length = 929
Score = 67.5 bits (162), Expect = 2e-10
Identities = 69/214 (32%), Positives = 105/214 (48%), Gaps = 22/214 (10%)
Frame = +1
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
LD R E + EF A++SHELRTPL + G T L P ++ +
Sbjct: 278 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGLIGFTRQTLKTP-LNTTQTDYLLTIERS 336
Query: 631 EQQCSDLIGALLLLSRNERG--------HGSSNVAKVAEQLLDSHRAQLGGKRIELILED 786
++I +L S+ E G N LL +H A K +EL L
Sbjct: 337 ANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLL-AHTAH--EKGLELTLSI 393
Query: 787 KHDLTVNAPESALSV--ALGNLIGNAVKYTLEGRVTVRVLEK---------AVEIQDTGP 933
++D+ L + + NL+GNA+K+T +G + +RV ++ V+I+DTG
Sbjct: 394 QNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLEVQIRDTGI 453
Query: 934 GLSEQDAAKLFQRGYRGTHAGHSQ---GGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
G++E ++LFQ +R S+ G G+GL I RL G +S Q S G
Sbjct: 454 GIAELQQSQLFQ-AFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKG 508
>gi|3860792|emb|CAA14692| (AJ235271) HISTIDINE KINASE SENSOR PROTEIN
(barA) [Rickettsia prowazekii]
Length = 497
Score = 67.5 bits (162), Expect = 2e-10
Identities = 68/230 (29%), Positives = 111/230 (47%), Gaps = 20/230 (8%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
+E E R L ++ + + +F A++SHELRTPL I G +E+L+++ + + K
Sbjct: 246 EEQLETNRNLKAQIEKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSERDTE-KSK 304
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH----------RAQL 753
A + +I +L LS+ S++ KV LD + + +
Sbjct: 305 NYIKDIHDAGKHLLSMINDILDLSK-----ASADKLKVDNIDLDLNKLISSSLILIKPRA 359
Query: 754 GGKRIELILE-DKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK-------A 909
+ELI K + +NA L L NL+ NAVK+T G LEK
Sbjct: 360 YQAEVELISRLPKEHVVINADPKRLKQVLLNLLSNAVKFTNSGGSVTISLEKDELAKLVY 419
Query: 910 VEIQDTGPGLSEQDAAK-LFQRGYRGTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGD 1083
+++ DTG G+ E+D K L G + +G G+GL + +L +L K +Q
Sbjct: 420 IKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKI 479
Query: 1084 SYGVIATLRF 1113
+ G T+ F
Sbjct: 480 NKGTTVTITF 489
>gi|5103041|dbj|BAA78774.1| (AB028738) Sensor histidine kinase protein
VirJ [Clostridium perfringens]
Length = 471
Score = 67.5 bits (162), Expect = 2e-10
Identities = 61/215 (28%), Positives = 115/215 (53%), Gaps = 27/215 (12%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDRE--------------FNADVSHELRTPLAVIRGAT 561
DE+G+LA ++ ++++ E +++ E F +++HEL+TPL I G
Sbjct: 227 DEIGDLACGVNKMANKIEEQIEKINEEKEKVLTLEKTRTEFFNNITHELKTPLTNISGYA 286
Query: 562 ELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLSRN----ERGH-GSSNVAKVAE 723
+++ + D E ++ +LI +L+ +S+N E G + N+ + E
Sbjct: 287 QIMSEEDFHDNDFRKFALERINKESKRMHELIVSLIEISKNKSDIEGGEIENVNLKTLIE 346
Query: 724 QLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVL 900
L + + + G K+ I + D+ E + + NL+ NA+KY+++G + + +
Sbjct: 347 DLCEDFKVK-GDKQGICISNNLEDIEFMCREDEIRRIIINLLDNAIKYSIKGSEINISLF 405
Query: 901 ----EKAVEIQDTGPGLSEQDAAKLFQRGYR-GTHAGHSQGG-GIGLSIVSRLCDLYGWK 1062
EK +EI++ +S + K+F+ YR T GG G+GL I S L YG
Sbjct: 406 KDKEEKHIEIENFSDEISSEGVEKIFEPFYRENTKKSRELGGNGLGLYICSELVKKYGGD 465
Query: 1063 VS 1068
+S
Sbjct: 466 IS 467
>gi|4062194|dbj|BAA35204| (D90699) Sensor protein copS (EC 2.7.3.-).
[Escherichia coli]
Length = 484
Score = 67.1 bits (161), Expect = 3e-10
Identities = 65/273 (23%), Positives = 126/273 (45%), Gaps = 13/273 (4%)
Frame = +1
Query: 253 LKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEV 432
L L ++ V S L + I + K P+ +++ ++ + + + L P E+
Sbjct: 187 LMNKLIMTASVISILIVFIVLLAVHKGHAPIRSVSRQIQNITSKDLDVR-LDPQTVPIEL 245
Query: 433 GELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXX 612
+L + + R+ +V R F+AD++HE+RTP+ + TE+ L++ +
Sbjct: 246 EQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVL 305
Query: 613 XXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIEL- 774
+ + ++ +L L++ + N+A ++ D A + +EL
Sbjct: 306 YSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELR 365
Query: 775 ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTV---RVLEKAVEIQDTGPG--L 939
+ DK V L AL NL+ NA++YT G V + ++ V++ PG +
Sbjct: 366 FVGDK--CQVAGDPLMLRRALSNLLSNALRYTPTGETIVVRCQTVDHLVQVIVENPGTPI 423
Query: 940 SEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSV 1071
+ + +LF R YR + +G GIGL+IV + + V+V
Sbjct: 424 APEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAV 469
>gi|1001516|dbj|BAA10143| (D64000) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 383
Score = 67.1 bits (161), Expect = 3e-10
Identities = 61/220 (27%), Positives = 106/220 (47%), Gaps = 24/220 (10%)
Frame = +1
Query: 433 GELARALDDY------SSRLTEVVQRDREFNADVSHELRTPLAVIRGAT---ELLLTKPE 585
GEL + D+ L + +Q + A ++H+LR+PL A ELL KP
Sbjct: 129 GELMKMSDELFLLKKDKEELLQQIQFKDQILAMLAHDLRSPLTAASIAVDTLELLQHKPI 188
Query: 586 MDPKXXXXXXXXXXAEQQ-------CSDLIGALLLLSRNERGHGSS-NVAKVAEQLLDSH 741
+ K A +Q D++ A L+ + HG +A + +++L+ +
Sbjct: 189 EEQKPALRSQLLYQARKQFKIMDRLIEDILQASKNLNSQFQVHGRPLAIADLCQEVLELY 248
Query: 742 RAQLGGKRIELILEDKHDL-TVNAPESALSVALGNLIGNAVKYT-LEGRVTVRVLEKA-- 909
+A+ K + + + DL V A E + + NL+ NA+KYT G +TV L +
Sbjct: 249 QAKFSKKNLTITYDIPKDLPNVFADEELIRQVIANLLDNAIKYTPAHGSITVGALHRTTQ 308
Query: 910 ---VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPG 1080
V I D GPG+ +F+ +R + G G+GLS+ ++ + ++ V
Sbjct: 309 KVQVSITDNGPGIPNSKQETIFEGHFRLQRDEQTDGYGLGLSLCRKIIQAHYGQIWVDSR 368
Query: 1081 DSYG 1092
G
Sbjct: 369 PKQG 372
>gi|2500766|sp|P77485|YBCZ_ECOLI PROBABLE SENSOR PROTEIN YBCZ
>gi|1778485 (U82598) PcoS homolog [Escherichia coli]
>gi|1786783 (AE000162) putative 2-component sensor
protein [Escherichia coli]
Length = 480
Score = 67.1 bits (161), Expect = 3e-10
Identities = 65/273 (23%), Positives = 126/273 (45%), Gaps = 13/273 (4%)
Frame = +1
Query: 253 LKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEV 432
L L ++ V S L + I + K P+ +++ ++ + + + L P E+
Sbjct: 183 LMNKLIMTASVISILIVFIVLLAVHKGHAPIRSVSRQIQNITSKDLDVR-LDPQTVPIEL 241
Query: 433 GELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXX 612
+L + + R+ +V R F+AD++HE+RTP+ + TE+ L++ +
Sbjct: 242 EQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVL 301
Query: 613 XXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIEL- 774
+ + ++ +L L++ + N+A ++ D A + +EL
Sbjct: 302 YSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELR 361
Query: 775 ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTV---RVLEKAVEIQDTGPG--L 939
+ DK V L AL NL+ NA++YT G V + ++ V++ PG +
Sbjct: 362 FVGDK--CQVAGDPLMLRRALSNLLSNALRYTPTGETIVVRCQTVDHLVQVIVENPGTPI 419
Query: 940 SEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKVSV 1071
+ + +LF R YR + +G GIGL+IV + + V+V
Sbjct: 420 APEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAV 465
>gi|6687470|emb|CAB64973.1| (AJ012050) VicK protein [Enterococcus
faecalis]
Length = 611
Score = 67.1 bits (161), Expect = 3e-10
Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 16/199 (8%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLL 672
REF ++VSHELRTPL +R E L +P+ E + +I LL L
Sbjct: 379 REFVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNL 438
Query: 673 SRNERGHGS-----SNVAKVAEQLLDSHRAQLGG--KRIELILE-DKHDLTVNAPESALS 828
SR + G+ N ++ +LD + K ++ E K DL V +
Sbjct: 439 SRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLWVELDTDKVI 498
Query: 829 VALGNLIGNAVKYTLEGRV-TVRVLEK----AVEIQDTGPGLSEQDAAKLFQRGYRGTHA 993
L N++ NA+KY+ +G V T R++E I D G G+ ++D K+F+R YR A
Sbjct: 499 QVLDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKA 558
Query: 994 -GHSQGG-GIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
+QGG G+GL+I + + + V+ + G
Sbjct: 559 RARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEG 593
>gi|556614 (U14909) MtrB [Mycobacterium tuberculosis]
Length = 567
Score = 67.1 bits (161), Expect = 3e-10
Identities = 65/253 (25%), Positives = 125/253 (48%), Gaps = 26/253 (10%)
Frame = +1
Query: 271 ISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTY-RGQTTNPKPLAPHFPDDEVGELAR 447
+ +++ +G++LL+ + +V+ PV +++ + G + P+ +D++ LA
Sbjct: 221 VLLVLLAGIALLV----SRQVVVPVRSASRIAERFAEGHLSERMPVRG---EDDMARLAV 273
Query: 448 ALDDYSSRLTEVVQR-------DREFNADVSHELRTPLAVIRGATELLLT-KPEMDPKXX 603
+ +D + L+ + + R F +DVSHEL TPL +R A +L+ ++DP
Sbjct: 274 SFNDMAESLSRQIAQLEEFGNLQRRFTSDVSHELGTPLTTVRMAADLIYDHSADLDPTLR 333
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLD------------SHRA 747
+ L+ LL +SR++ G VA+++ + +D H A
Sbjct: 334 RSTELMVSELDRFETLLNDLLEISRHDAG-----VAELSVEAVDLRTTVNNALGNVGHLA 388
Query: 748 QLGGKRIELILE-DKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AV 912
+ G IEL+++ + + L NLI NA+ + V +R+ AV
Sbjct: 389 EEAG--IELLVDLPAEQVIAEVDARRVERILRNLIANAIDHAEHKPVRIRMAADEDTVAV 446
Query: 913 EIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSI 1029
++D G GL + +F R +R + + GG GL +
Sbjct: 447 TVRDYGVGLRPGEEKLVFSRFWRSDPSRVRRSGGTGLGL 485
>gi|2500763|sp|Q04804|PFES_PSEAE SENSOR PROTEIN PFES
>gi|479632|pir||S34997 pfeS protein - Pseudomonas
aeruginosa >gi|151438 (L07739) putative [Pseudomonas
aeruginosa]
Length = 446
Score = 66.7 bits (160), Expect = 3e-10
Identities = 72/262 (27%), Positives = 118/262 (44%), Gaps = 10/262 (3%)
Frame = +1
Query: 295 LSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPD--DEVGELARALDDYSS 468
L+ L+G ++ P++ L R PLA DE+GELA+AL+ +
Sbjct: 167 LAALLGLLLYRHLVVPLNRLRDRADALRADELESTPLAAPLAARRDELGELAQALEHMAE 226
Query: 469 RLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSD 648
RL + + R +SHELRTPLA +R A + L ++ + + D
Sbjct: 227 RLRLSLAQQRLLLRTLSHELRTPLARLRIAHDSELPPEQLRQRLDREIGDMQRLLEDTLD 286
Query: 649 LIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALS 828
L A + R + V E L D + G L D V +L+
Sbjct: 287 L--AWMDTERPQLPTEPVLELSVWEALRDDACFESGWDPARLPCRLGVDCRVEVHLDSLA 344
Query: 829 VALGNLIGNAVKYTLE-GRVTVRVLEKA----VEIQDTGPGLSEQDAAKLFQRGYRGTHA 993
A+ NL+ NA++++ E G V++ + + +QD GPG++E ++F Y+
Sbjct: 345 QAMENLLRNAIRHSPEDGTVSLDGEREGDFWHLRLQDQGPGVAEDQLERIF-LPYQRLDD 403
Query: 994 GHSQGGGIGLSIVSRLCDLYG---WKVSVQPG 1080
+G G+GL+I R +L G W + +PG
Sbjct: 404 SAGEGFGLGLAIARRAIELQGGRLWASNGKPG 435
>gi|2598024|emb|CAA03998| (AJ000330) Styrene sensor kinase
[Pseudomonas sp.]
Length = 982
Score = 66.7 bits (160), Expect = 3e-10
Identities = 63/270 (23%), Positives = 119/270 (43%), Gaps = 13/270 (4%)
Frame = +1
Query: 289 SGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSS 468
SG ++ +S + + ++A LL R T+ K + E+ L+
Sbjct: 123 SGEQTIVVDYSLTPLRDNHGEVAFLLAEGRNITSKKKY------EQEIARKNAELEKLVE 176
Query: 469 RLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSD 648
++ + ++ F +++SHELRTPL++I G + +L E
Sbjct: 177 QIRMLDEQKNRFFSNLSHELRTPLSLILGPVDEMLVSSEFSEHQHTNLASIRRNAVTLLR 236
Query: 649 LIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAP 813
+ LL L++ + G + ++ + +++ A +RI + + + A
Sbjct: 237 HVNELLDLAKIDAGKLQLAYELIDITGLVKEITAHFEAHAKQRRIHCAVLSPGPILLEAD 296
Query: 814 ESALSVALGNLIGNAVKYTLE-GRVTVRV-----LEKAVEIQDTGPGLSEQDAAKLFQRG 975
+S + NL+ NA T + GR++ V + + DTGPG+ ++F+R
Sbjct: 297 PEKISHVVFNLVANAFNATPDGGRISCHVEIGEGNRCLLTVSDTGPGVPPDMRQRIFERF 356
Query: 976 YRGT--HAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
+G H G G+GL+IV +L+G V+V S G I
Sbjct: 357 QQGVEEHGEARAGSGLGLAIVKEFIELHGGTVTVGEAPSSGAI 399
Score = 45.7 bits (106), Expect = 7e-04
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATE-----LLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGAL 663
E A ++HEL PLA + + L + P + +++ ++
Sbjct: 753 ELVASITHELNQPLAAMVANSHACRRWLNSSPPNLKEGIASVEAVVRDSQRAAEVVLRLR 812
Query: 664 LLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDL-TVNAPESALSVALG 840
+ + R E H N++ V E++L R L + I L DL V A L +
Sbjct: 813 MFMRRGETQHEPLNLSGVVEEVLGYVRESLVMQGISLETTLPTDLPMVLADRVQLQQVVL 872
Query: 841 NLIGNAVKYTLEG-----RVTVRVLEK------AVEIQDTGPGLSEQDAAKLFQRGYRGT 987
NL+ NA++ R+T+R+ +E++D G G+ ++F+ Y
Sbjct: 873 NLVLNAIEAIQAASPSVPRLTLRICRSPDNGPLRLEVEDNGCGVPSSQTERIFEPFY--- 929
Query: 988 HAGHSQGGGIGLSIVSRLCDLYGWKVSVQP 1077
S G G+GL+I + + +G ++++ P
Sbjct: 930 -TTKSHGMGMGLAICRTILEAHGGQLNLLP 958
>gi|6460879|gb|AAF12583.1|AE001826_52 (AE001826) sensor histidine
kinase/response regulator [Deinococcus radiodurans]
Length = 416
Score = 66.7 bits (160), Expect = 3e-10
Identities = 64/214 (29%), Positives = 101/214 (46%), Gaps = 19/214 (8%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNAD-------VSHELRTPLAVIRGATELLLTK-- 579
E+ E + AL+ S+ L R E N+D +SH+LR+P+ I G LL +
Sbjct: 167 ELQERSAALEAQSAELARQGARLAEVNSDLEAFAYSISHDLRSPVRHIMGFANLLERRLG 226
Query: 580 PEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR---NERGHGSSNVAKVAEQLLDSHRAQ 750
+DP+ + + + LI ALL SR E G N+ + E +
Sbjct: 227 EGLDPQVQRYLDNIGRSAETMNTLIDALLAFSRFGLQEINLGPVNLQALFEDVRAEQTQD 286
Query: 751 LGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE---GRVTVRVLEK----A 909
+ +++E + V L + L NL+GNA+KYT R+TV E
Sbjct: 287 VQQRQVEWEVSSLP--VVQGDRQLLRLVLTNLLGNALKYTRTRDVARITVHADETPEAWT 344
Query: 910 VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVS 1068
+ +QD G G + KLF R + +G G+GL+ V R+ +G V+
Sbjct: 345 ISVQDNGVGFDPRYQNKLFGVFQRLHYQHEFEGTGVGLATVRRIITRHGGNVT 397
>gi|3288065|emb|CAB09800| (Z97065) RisS protein [Bordetella
bronchiseptica] >gi|3288085|emb|CAA12134| (AJ224803) RisS
protein [Bordetella parapertussis]
Length = 474
Score = 66.3 bits (159), Expect = 4e-10
Identities = 84/275 (30%), Positives = 133/275 (47%), Gaps = 18/275 (6%)
Frame = +1
Query: 295 LSLLIGWWSASKVMKPVSDLAKLLRTY-RGQTTNPKPLAPHFPDDEVGELARALDDYSSR 471
LSL+ S V +P+S LA+ + RG+T P PL P E+ +L + + +
Sbjct: 185 LSLVGAAVSVGFVNRPLSRLARAAQVLSRGET--PAPLPEQGPL-EIRDLNASFNRMAKD 241
Query: 472 LTEVVQRDREFN-ADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSD 648
L + + DRE A +SH+LRTPLA +R + EM Q
Sbjct: 242 LRQA-EADRELMLAGISHDLRTPLARMR-------LEIEMSGVSEDARQAIDEDLGQIDH 293
Query: 649 LIGALLLLSR--NERGHGSSNVAKVAEQLLD---SHRAQLGGKRIELILEDKHDLTVNAP 813
IG L+ +R +++++ V +L + SH A LGG+ LE D + A
Sbjct: 294 SIGQLMEYARPAGTLPQLATDISSVLAELYERERSHTASLGGE-----LEASIDPGLRAR 348
Query: 814 ESALSVA--LGNLIGNAVKYTLEG----RVTVRVLEK----AVEIQDTGPGLSEQDAAKL 963
+AL + + NLI NA +Y + + V + A+E+ D GPG++ ++ +L
Sbjct: 349 ITALDLKRIVSNLIENARRYGRSSDGLAHLAISVHSEGNILAIEVADRGPGIAPEEVDRL 408
Query: 964 FQRGYRGTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRFFK 1119
+ RG A G G+GL+IV RL G + + P G+IA + K
Sbjct: 409 LRPFSRGEAARTGVSGAGLGLAIVERLLKHVGGSLRMLPRQGGGLIARIELPK 461
>gi|3288072|emb|CAA12133| (AJ224802) RisS protein [Bordetella avium]
>gi|3288087|emb|CAA12135| (AJ224804) RisS protein
[Bordetella parapertussis] >gi|3288103|emb|CAA12130|
(AJ224799) RisS protein [Bordetella pertussis]
Length = 474
Score = 66.3 bits (159), Expect = 4e-10
Identities = 84/275 (30%), Positives = 133/275 (47%), Gaps = 18/275 (6%)
Frame = +1
Query: 295 LSLLIGWWSASKVMKPVSDLAKLLRTY-RGQTTNPKPLAPHFPDDEVGELARALDDYSSR 471
LSL+ S V +P+S LA+ + RG+T P PL P E+ +L + + +
Sbjct: 185 LSLVGAAVSVGFVNRPLSRLARAAQVLSRGET--PAPLPEQGPL-EIRDLNASFNRMAKD 241
Query: 472 LTEVVQRDREFN-ADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSD 648
L + + DRE A +SH+LRTPLA +R + EM Q
Sbjct: 242 LRQA-EADRELMLAGISHDLRTPLARMR-------LEIEMSGVSEDARQAIDEDLGQIDH 293
Query: 649 LIGALLLLSR--NERGHGSSNVAKVAEQLLD---SHRAQLGGKRIELILEDKHDLTVNAP 813
IG L+ +R +++++ V +L + SH A LGG+ LE D + A
Sbjct: 294 SIGQLMEYARPAGTLPQLATDISSVLAELYERERSHTASLGGE-----LEASIDPGLRAR 348
Query: 814 ESALSVA--LGNLIGNAVKYTLEG----RVTVRVLEK----AVEIQDTGPGLSEQDAAKL 963
+AL + + NLI NA +Y + + V + A+E+ D GPG++ ++ +L
Sbjct: 349 ITALDLKRIVSNLIENARRYGRSSDGLAHLAISVHSEGNILAIEVADRGPGIAPEEVDRL 408
Query: 964 FQRGYRGTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRFFK 1119
+ RG A G G+GL+IV RL G + + P G+IA + K
Sbjct: 409 LRPFSRGEAARTGVSGAGLGLAIVERLLKHVGGSLRMLPRQGGGLIARIELPK 461
>gi|1869996|emb|CAB06847| (Z92539) hypothetical protein Rv1032c
[Mycobacterium tuberculosis] >gi|2665495|gb|AAC06145.1|
(U88959) sensor homolog TrcS [Mycobacterium tuberculosis]
Length = 509
Score = 66.3 bits (159), Expect = 4e-10
Identities = 70/226 (30%), Positives = 108/226 (46%), Gaps = 24/226 (10%)
Frame = +1
Query: 418 PDDEVG----ELARALDDYSSRLTEVVQRD---REFNADVSHELRTPLAVIRGATELL-L 573
PD+EVG L R LD+ L V D R+F D SHELRTPLA I+G EL
Sbjct: 246 PDNEVGIVGHTLNRLLDNVDGALAHRVDSDLRMRQFITDASHELRTPLAAIQGYAELTRQ 305
Query: 574 TKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSN-----VAKVAEQLLDS 738
++ P ++ + L+ LLLLSR G V + D+
Sbjct: 306 DSSDLPPTTEYALARIESEARRMTLLVDELLLLSRLSEGEDLETEDLDLTDLVINAVNDA 365
Query: 739 HRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVL----- 900
A + ++ + ++ + VN + L + NL+ NA +T G VT+ +
Sbjct: 366 AVAAPTHRWVKNLPDE--PVWVNGDHARLHQLVSNLLTNAWVHTQPGVTVTIGITCHRTG 423
Query: 901 --EKAVE--IQDTGPGLSEQDAAKLFQRGYRGTHA-GHSQGGGIGLSIVSRLCDLYGWKV 1065
VE + D GP + + LF R R + + + G G+GL+IVS + + V
Sbjct: 424 PNAPCVELSVTDDGPDIDPEILPHLFDRFVRASKSRSNGSGHGLGLAIVSSIVKAHRGSV 483
Query: 1066 SVQPGDSYGV 1095
+ + G+ V
Sbjct: 484 TAESGNGQTV 493
>gi|2621510 (AE000828) sensory transduction histidine kinase
[Methanobacterium thermoautotrophicum]
Length = 373
Score = 66.3 bits (159), Expect = 4e-10
Identities = 60/210 (28%), Positives = 97/210 (45%), Gaps = 12/210 (5%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPE--MDPKXXXX 609
EL L + +L + + F VSH+LR PL I G + +L+ E +D +
Sbjct: 133 ELNLELKKQAEKLEDANKELEAFAYSVSHDLRVPLRAIDGFSRILVEDYEDKLDDEGVRI 192
Query: 610 XXXXXXAEQQCSDLIGALLLLSR---NERGHGSSNVAKVAEQLLDSHRAQLGGKRIELIL 780
++ LI +LLLSR E ++ ++AE +Q G+ IE +
Sbjct: 193 LGIIRDNTRKMGQLIDDILLLSRAGRQEMNLAMLDMRELAESTYRELASQEEGRSIEFSV 252
Query: 781 EDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVL-------EKAVEIQDTGPGL 939
D A + + +GNL+ NA+K+T + V + E ++D G G
Sbjct: 253 ADLPPAM--ADRALMGQVMGNLLSNAIKFTRDRDPAVIEVGYMDGGDEHTYYVKDNGAGF 310
Query: 940 SEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
+ A+KLF R +G G+GLSIV R+ +G +V
Sbjct: 311 DMKYASKLFGLFQRLHSQEEFEGTGVGLSIVQRIIKRHGGRV 352
>gi|3913256|sp|Q54955|CIAH_STRPN SENSOR PROTEIN CIAH
>gi|1363426|pir||S49545 histidine kinase - Streptococcus
pneumoniae >gi|495277|emb|CAA54466| (X77249) histidine
kinase [Streptococcus pneumoniae]
>gi|5830518|emb|CAB54565.1| (AJ005926) histidine kinase
[Streptococcus pneumoniae]
Length = 444
Score = 66.3 bits (159), Expect = 4e-10
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Frame = +1
Query: 472 LTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSD 648
L E +Q+ + F + SHELRTPLAV++ E L KPE E +
Sbjct: 210 LLESMQKQQSFVENASHELRTPLAVLQNRLETLFRKPEATIMDVSESIASSLEEVRNMRF 269
Query: 649 LIGALLLLSRNERGHGSSNVAKVAEQLLD---SHRAQLGGKRIELI-LEDKHDLTVNAPE 816
L +LL L+R + G +A+V + ++ + + + E++ T+ +
Sbjct: 270 LTTSLLNLARRDDGI-KPELAEVPTSFFNTTFTNYEMIASENNRVFRFENRIHRTIVTDQ 328
Query: 817 SALSVALGNLIGNAVKYTLEGRVTVRVLEKAVE------IQDTGPGLSEQDAAKLFQRGY 978
L + L NAVKYT E + L A + + D G G+S +D K+F R Y
Sbjct: 329 LLLKQLMTILFDNAVKYTEEDG-EIDFLISATDRNLYLLVSDNGIGISTEDKKKIFDRFY 387
Query: 979 RGTHAGHSQGG--GIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
R A Q G G+GLS+ ++ D V+V+ G I
Sbjct: 388 RVDKARTRQKGGFGLGLSLAKQIVDALKGTVTVKDNKPKGTI 429
>gi|2218094 (U93704) sensor protein RssA [Riftia pachyptila
endosymbiont]
Length = 773
Score = 66.0 bits (158), Expect = 6e-10
Identities = 79/286 (27%), Positives = 147/286 (50%), Gaps = 38/286 (13%)
Frame = +1
Query: 250 QLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTT-NPKPLAPHFPD- 423
+ + +L + V++ ++L+I S+ + + ++ ++ L G+ + +P+A H+
Sbjct: 290 EFRTSLSLRVILIVLVALIIVLLSSRWIAQQIAHFSETLADGIGRVLKSDQPVAFHWRGP 349
Query: 424 ---DEVGELARALDD-----------YSSRLTEVVQRDREFNADVSHELRTPLAVIRGAT 561
+E+GE AL + ++ +L E + EF A+VSHELRTPL I +
Sbjct: 350 REIEELGEKLTALAETHAHHTQAQREHARQLEESNRYKSEFLANVSHELRTPLNSILLLS 409
Query: 562 ELLLTKPE-MDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHG-----SSNVAKVAE 723
++L + + + + A LI +L LSR E G ++ ++ E
Sbjct: 410 KMLREEGDNLGEQQCKQLKVIHEAGSDLKALIDNILDLSRIEAGQAGLVLDQIDIRRMVE 469
Query: 724 QLLDSHRAQLGGKRIELILEDKHDLTVNAPESALS------VALGNLIGNAVKYTLEGRV 885
+LL+ + Q K + L K + P+ LS L N + N++K+T EG
Sbjct: 470 ELLELVQPQFEAKGLYL----KAEFDPQLPDGFLSDQEKVRQILKNFLSNSIKFTAEGGA 525
Query: 886 TVRV---LEKA-----VEIQDTGPGLSEQDAAKLFQ--RGYRGTHAGHSQGGGIGLSIVS 1035
+ V L+ A +QD+G G+ ++ +F+ + G+ G G+GLSI
Sbjct: 526 ILHVYRDLDSACCPLCFALQDSGIGIPQEKHELIFEAFKQADGSTNRRFGGTGLGLSISR 585
Query: 1036 RLCDLYGWKVSVQPGDSYGVIATL 1107
+L L G ++ +Q + G TL
Sbjct: 586 QLAQLLGGEIRLQSQEQQGARFTL 609
>gi|6136816|dbj|BAA85818.1| (AB026499) ethylene receptor CS-ERS
[Cucumis sativus]
Length = 637
Score = 66.0 bits (158), Expect = 6e-10
Identities = 65/217 (29%), Positives = 111/217 (50%), Gaps = 33/217 (15%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ + ALD + +F A ++HE+RTP+ I + LLL + E+ P+
Sbjct: 323 DQLVDQNVALDLARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLLL-ETELTPEQR 381
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G GS N+ + ++ LD + K++
Sbjct: 382 VMIETILKSSNLLATLINDVLDLSRLEDGSLVLDMGSFNLHAIFKEALDLVKPIASVKKL 441
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTV-------------RVLE 903
+ L DL + A E L + N++GN VK+T EG V++ R E
Sbjct: 442 SMALILASDLPICAVGDEKRLMQIILNIVGNGVKFTKEGHVSIIASVAKLDSLRDWRPTE 501
Query: 904 -----------KAVEIQDTGPGLSEQDAAKLFQRGYR-GTHAGHSQGG-GIGLSIVSRLC 1044
V+++D+G G+ QD LF R + T + + G G+GL++ R
Sbjct: 502 FYPMQSDGQFYLRVQVKDSGCGIPPQDIPHLFTRFTQLQTRSNKTNSGVGLGLALCKRFI 561
Query: 1045 DLYGWKVSVQ 1074
+L G + ++
Sbjct: 562 NLMGGHIWIE 571
>gi|2707334|gb|AAC99477.1| (AF037368) putative ethylene receptor;
Cm-ERS1 [Cucumis melo]
Length = 637
Score = 66.0 bits (158), Expect = 6e-10
Identities = 65/217 (29%), Positives = 111/217 (50%), Gaps = 33/217 (15%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ + ALD + +F A ++HE+RTP+ I + LLL + E+ P+
Sbjct: 323 DQLVDQNVALDLARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLLL-ETELTPEQR 381
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G GS N+ + ++ LD + K++
Sbjct: 382 VMIETILKSSNLLATLINDVLDLSRLEDGSLVLDMGSFNLHAIFKEALDLIKPIASVKKL 441
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTV-------------RVLE 903
+ L DL + A E L + N++GN VK+T EG V++ R E
Sbjct: 442 SMALILASDLPICAVGDEKRLMQIILNIVGNGVKFTKEGHVSIIASIAKLDSLRDWRPTE 501
Query: 904 -----------KAVEIQDTGPGLSEQDAAKLFQRGYR-GTHAGHSQGG-GIGLSIVSRLC 1044
V+++D+G G+ QD LF R + T + + G G+GL++ R
Sbjct: 502 FYPMQSDGQFYLRVQVKDSGCGIPPQDIPHLFTRFTQLQTRSNKTNSGVGLGLALCKRFI 561
Query: 1045 DLYGWKVSVQ 1074
+L G + ++
Sbjct: 562 NLMGGHIWIE 571
>gi|4545094|gb|AAD22391.1|AF064527_1 (AF064527) PPH [Rhodocista
centenaria]
Length = 884
Score = 66.0 bits (158), Expect = 6e-10
Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 18/221 (8%)
Frame = +1
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT--KPEMDPK-XXXXXX 615
R + + S +L + F A++SHELRTPL I G ++L+++ + P+
Sbjct: 645 RHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFSDLMMSGMAGTLPPRIQDYVQS 704
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH-------RAQLGGKRIEL 774
E ++ +L LSR E G + + +L + RA G +E+
Sbjct: 705 IHASGEHLLRMVVNDVLDLSRIEAGRMELSPESLDAGILAAECVGMLLPRAVRGEVLLEV 764
Query: 775 ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVLEKA-----VEIQDTGPG 936
E LT +A L L N+IGNAVK+T GRV VR A ++DTGPG
Sbjct: 765 QAESPLPLTADA--LRLRQILLNIIGNAVKFTPPGGRVDVRARALAGGGAVFTVRDTGPG 822
Query: 937 LSEQDAAKLFQ--RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
++ ++ + R T A +G G+GL I L DL+ ++++ G T+
Sbjct: 823 MTPEEVLTAMEPFRQVAQTRAA-VEGTGLGLPIAKSLVDLHAGNLAIETAPGLGTTVTI 880
>gi|4210924|gb|AAD12777.1| (AF051938) ethylene receptor homolog
[Solanum tuberosum]
Length = 635
Score = 66.0 bits (158), Expect = 6e-10
Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 34/227 (14%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALDD ++ +F A ++HE+RTP+ + LLL + ++ P+
Sbjct: 320 DQLMEQNNALDDARQEAEMAIRARNDFLAVMNHEMRTPMHAVIALCSLLL-ETDLTPEQR 378
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G +G+ N+ + + ++ + K++
Sbjct: 379 VMIETILKSSNLLATLINDVLDLSRLEDGILELENGTFNLHGILREAVNLIKPIASLKKL 438
Query: 769 ELILEDKHDLTVNAPESA--LSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
+ L DL + A A L L N+ GNAVK+T EG +++
Sbjct: 439 SITLALALDLPILAVGDAKRLIQILLNVAGNAVKFTKEGHISIEASVAKPEYARDCHPPE 498
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQR--GYRGTHAGHSQGGGIGLSIVSRLC 1044
V+++DTG G+S QD +F + R T + G G+GL+I R
Sbjct: 499 MFPMPSDGQFYLRVQVRDTGCGISPQDIPLVFTKFAEARPTSNRSTGGEGLGLAICRRFI 558
Query: 1045 DLYGWKVSVQ-PGDSYGVIAT 1104
L + ++ G G T
Sbjct: 559 QLMKGNIWIESEGSGKGTTVT 579
>gi|1653282|dbj|BAA18197| (D90912) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 750
Score = 66.0 bits (158), Expect = 6e-10
Identities = 60/202 (29%), Positives = 104/202 (50%), Gaps = 20/202 (9%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLT---KPEMDPKXXXXXXXXXXAE--QQCSDLIGAL 663
+F ++SHELRTPL I G + LL P P E ++ D I ++
Sbjct: 381 QFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSI 440
Query: 664 LLLSRNERGHGSSNVAKVA-EQLLDSHRAQLGGKRIELILEDKHDLTVN-------APES 819
+ LS+ E G + N + L + L G I+ + + D +N A +
Sbjct: 441 IQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQE 500
Query: 820 ALSVALGNLIGNAVKYT-LEGRVTVRVLEKA----VEIQDTGPGLSEQDAAKLFQ--RGY 978
L L L+ NA+K+T EG V +R+ +++ +++DTG G++EQ LF+ +
Sbjct: 501 RLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDTGIGINEQQLPVLFEAFKVA 560
Query: 979 RGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIAT 1104
++ + GG+GL++ +L +L+G + V+ G I T
Sbjct: 561 GDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFT 602
>gi|1731204|sp|P54883|YV16_MYCLE PROBABLE SENSOR-LIKE HISTIDINE KINASE
B2168_C3_247 >gi|2145928|pir||S72905 phosphate sensor
phoR - Mycobacterium leprae >gi|467057 (U00018) phoR;
B2168_C3_247 [Mycobacterium leprae]
Length = 443
Score = 66.0 bits (158), Expect = 6e-10
Identities = 53/204 (25%), Positives = 92/204 (44%), Gaps = 12/204 (5%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
R+F A+VSHEL+TP+ + E LL + + ++ L+ LS
Sbjct: 159 RDFVANVSHELKTPVGAMALLAEALLASADDAETVSRFAEKVLIEANRLGYMVAELIELS 218
Query: 676 RNERGHGSSNVAKVAEQLLDS-----HRAQLGGKRIELILEDKHDLTVNAPESALSVALG 840
R + NV + ++ S H+ IE+ + L V ++ L AL
Sbjct: 219 RLQGAERLPNVTDIDVDIIVSEAIARHKVAADTAAIEVRTDPPSGLRVLGDQTLLVTALA 278
Query: 841 NLIGNAVKYTLEGRVTVRVLEKA-----VEIQDTGPGLSEQDAAKLFQRGYRGTHAGH-- 999
NL+ NA+ Y+ G + + + + D G G++ +D ++F+R +RG A
Sbjct: 279 NLVSNAIAYSPGGSLVSISRRRRGDNIEIAVTDRGIGIALEDQERVFERFFRGDKARSRA 338
Query: 1000 SQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
+ G G+GL+IV + + + V G TL
Sbjct: 339 TGGSGLGLAIVKHVAANHNGSIGVWSKPGTGSTFTL 374
>gi|2575807|dbj|BAA22997| (D49692) adenylate cyclase [Spirulina
platensis]
Length = 1202
Score = 65.2 bits (156), Expect = 1e-09
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 12/215 (5%)
Frame = +1
Query: 463 SSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQC 642
+ RL E + EF +VSHE RTPL ++ G E ++ + ++
Sbjct: 553 AERLLEADRLKTEFFQNVSHEFRTPLTLMIGPLETVVN--QQQDLSLDQAKIALRNSRRL 610
Query: 643 SDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVN 807
L+ LL L R + G ++ + +Q ++S ++ K+I L+ + +
Sbjct: 611 LRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQSCPQLY 670
Query: 808 APESALSVALGNLIGNAVKYT-LEGRVTVRVLEKA----VEIQDTGPGLSEQDAAKLFQ- 969
L NL+ NA+K+T +G +TV + + + ++DTG G+ ++ LF+
Sbjct: 671 LDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNYCRLMVKDTGIGIKQEQLPHLFER 730
Query: 970 -RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
R G+ +G G+GL++V L +L+ +++V+ G T+
Sbjct: 731 FRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGTTFTV 777
>gi|4104609 (AF036968) putative histidine kinase [Lactobacillus sakei]
Length = 478
Score = 65.2 bits (156), Expect = 1e-09
Identities = 52/229 (22%), Positives = 103/229 (44%), Gaps = 15/229 (6%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
+ E+ +L++ + + R R+F ADV+HE+RTPL ++G E L +
Sbjct: 228 DFNEMVHSLNESEAEIKRQEDRRRQFMADVAHEMRTPLTTVKGLLEGLAYDAIPEEMREK 287
Query: 607 XXXXXXXAEQQCSDLIGALL-----LLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIE 771
+ L+ L ++ + + N K + + + + +
Sbjct: 288 SISLMQNETNRLIRLVNDNLDYEKIRTNQIKLNQQTFNAVKALQNIQEQLQKKAADAGDT 347
Query: 772 LILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVL----EKAVEIQDTGPGL 939
++LE + + + A L N++ NA+++T G++TV + + + DTG G+
Sbjct: 348 IVLEAQEKVAIYADYDRFVQVLFNIMQNAIQFTNNGQITVTAKAGFHKTILTVSDTGIGM 407
Query: 940 SEQDAAKLFQRGY------RGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIA 1101
+ + +++ Y + T G S G+GL+IV +L L+ + VQ G
Sbjct: 408 TSEQVKNIWEXYYKADPSRKNTKYGES---GLGLAIVHQLVQLHHGTIEVQSEPDQGTTF 464
Query: 1102 TLRF 1113
L F
Sbjct: 465 ILTF 468
>gi|1736873|dbj|BAA16014| (D90851) Sensor protein RcsC (EC 2.7.3.-).
[Escherichia coli]
Length = 807
Score = 64.0 bits (153), Expect = 2e-09
Identities = 60/225 (26%), Positives = 104/225 (45%), Gaps = 16/225 (7%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
++ +L + + + Q F A VSHELRTPL I G +LL TK E+
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVT 493
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH----------RAQLGGKR 765
+ +I +L S+ E + + + + +H R QLG
Sbjct: 494 AMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG--- 550
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGP 933
+ +E + +N L + NL+ NA+K+T G + + V ++ ++DTG
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGV 610
Query: 934 GLSEQDAAKLFQRGYR-GTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G+ ++ +LF ++ GT + QG G+GL+I +L + +SV G T+
Sbjct: 611 GIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTV 670
Query: 1108 R 1110
R
Sbjct: 671 R 671
>gi|1653075|dbj|BAA17992| (D90910) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 1261
Score = 64.0 bits (153), Expect = 2e-09
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 24/249 (9%)
Frame = +1
Query: 328 KVMKPVSDLAKLLRT-----YRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQR 492
K+ P ++ +L T Y GQ K + D + A A + L E R
Sbjct: 470 KMYNPRGEIRDILATFLATDYEGQ----KGILGWLADITPIKAAEAEMKRAKELAEEASR 525
Query: 493 DR-EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLL 669
+ +F A++SHE+RTP+ + G T L L K ++ P+ + Q +I +L
Sbjct: 526 IKADFLANMSHEIRTPMNAVIGMTHLAL-KTDLTPRQREYLHKIRFSGQHLLGVINDILD 584
Query: 670 LSRNERGH-GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPES------ALS 828
S+ E G ++ +++LD+ + K LE D+ N P L
Sbjct: 585 FSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLG 644
Query: 829 VALGNLIGNAVKYTLEGRVTVRV---------LEKAVEIQDTGPGLSEQDAAKLFQRGYR 981
L N NAVK+T +G +T+ V + + ++DTG G+ + A LF +
Sbjct: 645 QILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQ 704
Query: 982 --GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
+ + G G+GL+I R+ +L G +V V+
Sbjct: 705 ADSSTTRNFGGTGLGLAICKRIAELMGGEVGVE 737
>gi|416838|sp|P08336|CPXA_ECOLI SENSOR PROTEIN CPXA
>gi|541058|pir||S40855 cpxA protein - Escherichia coli
>gi|305015 (L19201) CG Site No. 908 [Escherichia coli]
>gi|1790346 (AE000466) probable sensor protein (histidine
protein kinase), acting on arcA [Escherichia coli]
Length = 457
Score = 64.0 bits (153), Expect = 2e-09
Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 18/255 (7%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELA 444
L +++LV + L L + W + KP L P P + + A
Sbjct: 168 LIVTMLVSTPLLLWLAW----SLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGA 223
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXX 624
+ + + L ++ + +D+SHELRTPL ++ T LL + +
Sbjct: 224 -SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEA- 281
Query: 625 XAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQL----LDS--HRAQLGGKRIELILED 786
Q+ +I LL++SRN++ + + A QL LD+ A+ GK
Sbjct: 282 ---QRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGK-------- 330
Query: 787 KHDLTVNAPE---------SALSVALGNLIGNAVKYT---LEGRVTVRVLEKAVEIQDTG 930
LTVN P +AL AL N++ NA++Y+ +E V + + D G
Sbjct: 331 --SLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDG 388
Query: 931 PGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSI 1029
PG+S +D ++F+ YR A + GG GL +
Sbjct: 389 PGVSPEDREQIFRPFYRTDEARDRESGGTGLGL 421
>gi|72575|pir||BVECCC regulatory protein rcsC - Escherichia coli
>gi|147525 (M28242) capsule synthesis regulator component
C [Escherichia coli]
Length = 933
Score = 64.0 bits (153), Expect = 2e-09
Identities = 60/225 (26%), Positives = 104/225 (45%), Gaps = 16/225 (7%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
++ +L + + + Q F A VSHELRTPL I G +LL TK E+
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVT 493
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH----------RAQLGGKR 765
+ +I +L S+ E + + + + +H R QLG
Sbjct: 494 AMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG--- 550
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGP 933
+ +E + +N L + NL+ NA+K+T G + + V ++ ++DTG
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGV 610
Query: 934 GLSEQDAAKLFQRGYR-GTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G+ ++ +LF ++ GT + QG G+GL+I +L + +SV G T+
Sbjct: 611 GIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTV 670
Query: 1108 R 1110
R
Sbjct: 671 R 671
>gi|147528 (L11272) putative [Escherichia coli]
Length = 933
Score = 64.0 bits (153), Expect = 2e-09
Identities = 60/225 (26%), Positives = 104/225 (45%), Gaps = 16/225 (7%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
++ +L + + + Q F A VSHELRTPL I G +LL TK E+
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVT 493
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH----------RAQLGGKR 765
+ +I +L S+ E + + + + +H R QLG
Sbjct: 494 AMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG--- 550
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGP 933
+ +E + +N L + NL+ NA+K+T G + + V ++ ++DTG
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGV 610
Query: 934 GLSEQDAAKLFQRGYR-GTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G+ ++ +LF ++ GT + QG G+GL+I +L + +SV G T+
Sbjct: 611 GIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTV 670
Query: 1108 R 1110
R
Sbjct: 671 R 671
>gi|1788548 (AE000311) sensor for ctr capsule biosynthesis, probable
histidine kinase acting on RcsB [Escherichia coli]
Length = 933
Score = 64.0 bits (153), Expect = 2e-09
Identities = 60/225 (26%), Positives = 104/225 (45%), Gaps = 16/225 (7%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
++ +L + + + Q F A VSHELRTPL I G +LL TK E+
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVT 493
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH----------RAQLGGKR 765
+ +I +L S+ E + + + + +H R QLG
Sbjct: 494 AMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG--- 550
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGP 933
+ +E + +N L + NL+ NA+K+T G + + V ++ ++DTG
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGV 610
Query: 934 GLSEQDAAKLFQRGYR-GTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G+ ++ +LF ++ GT + QG G+GL+I +L + +SV G T+
Sbjct: 611 GIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTV 670
Query: 1108 R 1110
R
Sbjct: 671 R 671
>gi|2507380|sp|P14376|RCSC_ECOLI SENSOR PROTEIN RCSC (CAPSULAR
SYNTHESIS REGULATOR COMPONENT C)
Length = 933
Score = 64.0 bits (153), Expect = 2e-09
Identities = 60/225 (26%), Positives = 104/225 (45%), Gaps = 16/225 (7%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
++ +L + + + Q F A VSHELRTPL I G +LL TK E+
Sbjct: 435 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVT 493
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH----------RAQLGGKR 765
+ +I +L S+ E + + + + +H R QLG
Sbjct: 494 AMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG--- 550
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGP 933
+ +E + +N L + NL+ NA+K+T G + + V ++ ++DTG
Sbjct: 551 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGV 610
Query: 934 GLSEQDAAKLFQRGYR-GTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G+ ++ +LF ++ GT + QG G+GL+I +L + +SV G T+
Sbjct: 611 GIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTV 670
Query: 1108 R 1110
R
Sbjct: 671 R 671
>gi|1736864|dbj|BAA16006| (D90850) Sensor protein RcsC (EC 2.7.3.-).
[Escherichia coli]
Length = 508
Score = 64.0 bits (153), Expect = 2e-09
Identities = 60/225 (26%), Positives = 104/225 (45%), Gaps = 16/225 (7%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
++ +L + + + Q F A VSHELRTPL I G +LL TK E+
Sbjct: 136 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVT 194
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSH----------RAQLGGKR 765
+ +I +L S+ E + + + + +H R QLG
Sbjct: 195 AMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG--- 251
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK----AVEIQDTGP 933
+ +E + +N L + NL+ NA+K+T G + + V ++ ++DTG
Sbjct: 252 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGV 311
Query: 934 GLSEQDAAKLFQRGYR-GTHAGHS-QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G+ ++ +LF ++ GT + QG G+GL+I +L + +SV G T+
Sbjct: 312 GIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTV 371
Query: 1108 R 1110
R
Sbjct: 372 R 372
>gi|1001174|dbj|BAA10317| (D64001) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 675
Score = 63.6 bits (152), Expect = 3e-09
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E+ E ALD S L + HELRTPL+ I+ E L T+P+M +
Sbjct: 402 ELNEQLAALDRTRSNLVAIT----------GHELRTPLSTIQVCLESLATEPDMPQELRQ 451
Query: 607 XXXXXXXAE-QQCSDLIGALLLLSRNERGHGSSNVAKVA-----EQLLDSHRAQLGGKRI 768
+ ++ L+ L LS+ E G N ++ E L RA G+ +
Sbjct: 452 VMLNTALEDAERMRKLVQDFLTLSQLESGRVEWNAEPISLEECVELSLSHIRAHNRGQEV 511
Query: 769 ELILEDKHDLT--VNAPESALSVALGNLIGNAVKYT-LEGRVTVRV-----LEKAVEIQD 924
+I+ + T V A L L L+ NA+K+T GR+++ V + V I D
Sbjct: 512 PVIVNQVNGETPMVEADGEWLVELLTKLLDNAIKFTPTNGRISIAVDRPNPSQLEVTITD 571
Query: 925 TGPGLSEQDAAKLFQRGYRGTHA-GHSQGG-GIGLSIVSRLCDLYGWKV-SVQPGDSYG 1092
TG G+ +F R Y+ A S+GG GIGL+I ++ +G ++ + G ++G
Sbjct: 572 TGRGIEPNRLETVFDRFYQEEGALRRSRGGTGIGLAICRQIVSGWGGEIWAASDGKNHG 630
>gi|3294236|emb|CAA19849| (AL031031) putative sensory histidine kinase
[Streptomyces coelicolor]
Length = 1829
Score = 63.2 bits (151), Expect = 4e-09
Identities = 69/227 (30%), Positives = 112/227 (48%), Gaps = 37/227 (16%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPE--MDPKX 600
E+ E + L++ + +L ++ EF A++SHELRTPL + +LL + + PK
Sbjct: 1344 EIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQ 1403
Query: 601 XXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVA-EQLLD----SHRAQLGGKR 765
A LI +L LS+ + G + ++A QL+D + R K
Sbjct: 1404 VEFAETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKG 1463
Query: 766 IELILEDKHDL--TVNAPESALSVALGNLIGNAVKYTLEGRVTV---------------R 894
++L + L T++ E L L NL+ NAVK+T G V + +
Sbjct: 1464 LDLSVRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQ 1523
Query: 895 VLEK-----------AVEIQDTGPGLSEQDAAKLFQ--RGYRGTHAGHSQGGGIGLSIVS 1035
+LE A + DTG G++ +F+ + GT + G G+GLSI
Sbjct: 1524 LLEAGSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISR 1583
Query: 1036 RLCDLYGWKVSVQPGDSYGVIATL 1107
+ L G ++ Q G TL
Sbjct: 1584 EIAQLLGGEIHAQSEPGRGSTFTL 1607
>gi|78352|pir||S01377 chemotaxis protein cpxA - Escherichia coli
>gi|41152|emb|CAA31687| (X13307) cpxA gene product (AA
1-458) [Escherichia coli] >gi|145590 (M36795) cpxA
product [Escherichia coli]
Length = 458
Score = 63.2 bits (151), Expect = 4e-09
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 12/255 (4%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELA 444
L +++LV + L L + W + KP L P P + + A
Sbjct: 169 LIVTMLVSTPLLLWLAW----SLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGA 224
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXX 624
+ + + L ++ + +D+SHELRTPL ++ T LL + +
Sbjct: 225 -SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEA- 282
Query: 625 XAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTV 804
Q+ +I LL++SRN++ + + A QL + ++ LTV
Sbjct: 283 ---QRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQM----GRSLTV 335
Query: 805 NAPE---------SALSVALGNLIGNAVKYT---LEGRVTVRVLEKAVEIQDTGPGLSEQ 948
N P +AL AL N++ NA++Y+ +E V + + D GPG+S +
Sbjct: 336 NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPE 395
Query: 949 DAAKLFQRGYRGTHAGHSQGGGIGLSI 1029
D ++F+ YR A + GG GL +
Sbjct: 396 DREQIFRPFYRTDEARDRESGGTGLGL 422
>gi|73051|pir||RGECAR aerobic respiration control protein arcB -
Escherichia coli >gi|40951|emb|CAA37397| (X53315) arcB
[Escherichia coli]
Length = 778
Score = 62.8 bits (150), Expect = 5e-09
Identities = 64/216 (29%), Positives = 102/216 (46%), Gaps = 17/216 (7%)
Frame = +1
Query: 460 YSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQ 639
Y L + F + +SHELRTPL I G + +LL E+ + +
Sbjct: 272 YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT-ELTAEQEKYLKTIHVSAVT 330
Query: 640 CSDLIGALLLLSRNERGHGSSNVAKVAE-------QLLDSHRAQLGGKRIEL--ILEDKH 792
++ ++ + + ER + V + L + +AQ G R L L H
Sbjct: 331 LGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPH 390
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA-----VEIQDTGPGLSEQDAA 957
+ + + L L NLI NAVK+T +G+VTVRV E++D+G G+ + +
Sbjct: 391 QVITDG--TRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELD 448
Query: 958 KLFQRGY--RGTHAGH-SQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
K+F Y + +H G + G GIGL++ RL G ++V G TL
Sbjct: 449 KIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTL 501
>gi|2808665|emb|CAA11376| (AJ223460) flhS [Paracoccus denitrificans]
Length = 441
Score = 62.5 bits (149), Expect = 6e-09
Identities = 64/221 (28%), Positives = 101/221 (44%), Gaps = 22/221 (9%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVV----------QRDREFNADVSHELRTPLAVIRGATELLLTK-- 579
EL +AL D S R E+ + F SH+L PL+ A +L L+
Sbjct: 57 ELEQALADLSERNRELAVARASAEEANRSKTRFLRAASHDLLQPLS----AAKLFLSALK 112
Query: 580 -PEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRN-----ERGHGSSNVAKVAEQLLDSH 741
+DP A + +L+ A+L +SR E ++ + +L +
Sbjct: 113 DTSLDPLQRELTDRLSGAFESVEELMHAVLDISRLDSQRIEFQRKPVDLGGLFRRLAIEY 172
Query: 742 RAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA---- 909
K + L + + P +A NL+ NA+KYT G V V V ++
Sbjct: 173 APMAEAKELRLSFAPTTAMVESDPTFLRRIAQ-NLVSNAIKYTDRGGVLVGVRKRGERAW 231
Query: 910 VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSY 1089
+EI DTG G++ D A++F R G + G G+GLSIV R C G +++
Sbjct: 232 LEIYDTGIGIAAPDRARIFDEFQRIGREGGAPGMGLGLSIVRRACAKLGHPIAMDSEPGR 291
Query: 1090 GVI 1098
G +
Sbjct: 292 GTV 294
>gi|3237373 (AF041833) putative sensor kinase [Providencia stuartii]
Length = 485
Score = 62.5 bits (149), Expect = 6e-09
Identities = 70/283 (24%), Positives = 123/283 (42%), Gaps = 15/283 (5%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELA 444
L ++++ L L +WS + VS ++ L + R P E+ L
Sbjct: 197 LLANLILVIPLLWLAAYWSLRPIKSLVSQISSLEKGEREMLDENPPY-------ELRGLV 249
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXX 624
R L++ + + + R +D++H L+TPLAV++ L T +M
Sbjct: 250 RNLNNLLTNERKRYSKYRTTLSDLTHSLKTPLAVLQSTLRSLRTGKQM---------TIE 300
Query: 625 XAEQQCSDLIGAL------LLLSRNERGHGSSNVAKVAE--QLLDSHRAQL----GGKRI 768
AE + IG + L + +G + + +++ LLDS + L K +
Sbjct: 301 QAEPVMLEQIGRISQQVGYYLHRASAQGDNNLMLREISSVPSLLDSLASALHKVYQNKGV 360
Query: 769 ELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVLEK--AVEIQDTGPGL 939
+ ++ ++T + +GN++ NA KY LE VT RV + + + D GPG+
Sbjct: 361 SITVDISPEVTWLGQPNDFMEVMGNIMENACKYCLEFVEVTARVGDDHLVITVDDDGPGV 420
Query: 940 SEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
E +F RG R G G+GLSI + D Y +++ G + F
Sbjct: 421 PESQRNLIFARGQRVDTL--RPGQGLGLSIAVEIIDQYDGDITISDSPLGGARVEVTF 476
>gi|1653308|dbj|BAA18223| (D90912) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 674
Score = 62.5 bits (149), Expect = 6e-09
Identities = 67/232 (28%), Positives = 115/232 (48%), Gaps = 21/232 (9%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPE-MDPKX 600
+E+ +AL+ SS F A++SHELRTPL I G +E+L+ + E +D +
Sbjct: 415 EELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEE 474
Query: 601 XX-XXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGK 762
+ + LI LL +S+ E G + N+ ++ +LD+ L
Sbjct: 475 LVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNN 534
Query: 763 ----RIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAV------ 912
+E+ LE + V L + NL+ NA K+T +G ++ V E V
Sbjct: 535 NNKLEVEISLESEE---VYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWL 591
Query: 913 --EIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ--GGGIGLSIVSRLCDLYGWKVSVQPG 1080
+++DTG GL+E+ +KLFQ + + + G G+GL+I + C + G + +
Sbjct: 592 SFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSE 651
Query: 1081 DSYGVIATLRFFK 1119
G T++ K
Sbjct: 652 IGVGSSFTIKLPK 664
>gi|1161055 (L43136) sensor kinase [Methylobacterium extorquens]
Length = 545
Score = 62.5 bits (149), Expect = 6e-09
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Frame = +1
Query: 478 EVVQRDRE-FNADVSHELRTPLAVIRGATELLLTKPE--------MDPKXXXXXXXXXXA 630
E+V R R F ADVSHELRTPL VI G +L E P
Sbjct: 293 EMVDRSRRRFFADVSHELRTPLTVILGECDLAQRSAEAAAGRMVDYGPVFTTIRKRAQRL 352
Query: 631 EQQCSDLIG-ALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILE-DKHDLTV 804
+++ DL +R+ + + +V +DS ++ +R+EL+LE HD+ +
Sbjct: 353 KRRVEDLFAWPARNPARSSSTGATVSAVEVLTDAVDSAGSEAARRRVELVLEPGDHDIEI 412
Query: 805 NAPESALSVALGNLIGNAVKY-TLEGRVTVRVLEKA--------VEIQDTGPGLSEQDAA 957
A L + +LI NA+++ T R+TV + E V I D GPG
Sbjct: 413 AADPEWLRQVVESLIDNALRHATGLTRITVSLSEHDTPQGRRAWVTIDDDGPGF-PAGGD 471
Query: 958 KLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYG 1092
LF+R R +G + G GIGL++ + + + +S+ + G
Sbjct: 472 GLFERFRREARSGEA-GFGIGLALARWVVERHDGAISLGKAEHGG 515
>gi|6458911|gb|AAF10744.1|AE001966_6 (AE001966) sensory box sensor
histidine kinase [Deinococcus radiodurans]
Length = 1131
Score = 62.1 bits (148), Expect = 8e-09
Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Frame = +1
Query: 427 EVGELARALDDYSSRLT-EVVQRDRE---FNADVSHELRTPLAVIRGATELLL--TKPEM 588
E+ +L ++L++ R T E+ + +RE F+ VSH+LRTPL I G +LL + +
Sbjct: 881 ELRQLNQSLEERVQRRTLELEEANRELEAFSYSVSHDLRTPLRHIVGFGDLLRKDSAEAL 940
Query: 589 DPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGH---GSSNVAKVAEQLLDSHRAQLGG 759
PK A + S LI +LL SR R ++ ++ E++ + G
Sbjct: 941 SPKSQRYLGVITDAAGRMSGLIDSLLEFSRMGRQPLRLVPVDLTELVERVWQNLEPDRQG 1000
Query: 760 KRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE---GRVTVRVLEKA----VEI 918
+ + L L V + L + NL+ NA+KY+ +VTV E + +
Sbjct: 1001 REVRLTLRPLPQ--VPGDPALLELVFQNLLSNALKYSRTREVAQVTVAASEDGGAARITV 1058
Query: 919 QDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ--PGD--S 1086
D G G + KLF R A G GIGL+ V R+ +G +VS PG+ +
Sbjct: 1059 TDNGVGFDPKYTDKLFGVFQRLHRAEEFDGIGIGLANVRRIVTRHGGQVSGSSVPGEGAT 1118
Query: 1087 YGVIATLR 1110
+ V+ LR
Sbjct: 1119 FTVVLPLR 1126
>gi|2662475 (AF034770) putative ethylene receptor [Dianthus
caryophyllus]
Length = 631
Score = 62.1 bits (148), Expect = 8e-09
Identities = 65/227 (28%), Positives = 114/227 (49%), Gaps = 32/227 (14%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALD ++ +F A ++HE+RTP+ I + +LL + E+ P+
Sbjct: 320 DQLMEQNVALDLARREAEMAIRARNDFLAVMNHEMRTPMHAIISLSSILL-ETELTPEQR 378
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSS-----NVAKVAEQLLDSHRAQLGGKRI 768
+ S LI +L LSR E G N+ V +++ + K++
Sbjct: 379 MMLEIILKSSNLLSTLINDVLDLSRLEDGSLELDPTVFNLHAVFTEVIQLIKPIASVKKL 438
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
L L ++ V A E L + N++GNAVK+T EG ++V
Sbjct: 439 SLTLGLAPEVPVYAVGDEKRLMQTILNVVGNAVKFTKEGFISVSASVARPESLTDWRASE 498
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDL 1050
V+++D+G G++ QD +F + + +S G G+GL+I R +L
Sbjct: 499 FYPDLTDSQFYLRVQVRDSGCGINPQDIPLIFNKFTQFNR--NSNGIGLGLAISKRFVNL 556
Query: 1051 YGWKVSVQ-PGDSYGVIAT 1104
G ++ ++ G G I+T
Sbjct: 557 MGGQIWIESDGHDKGSIST 575
>gi|1122856|emb|CAA63920| (X94231) TorS [Escherichia coli]
Length = 904
Score = 62.1 bits (148), Expect = 8e-09
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 13/208 (6%)
Frame = +1
Query: 487 QRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALL 666
Q F A +SHE+RTPL I G +LL P ++ + E + ++ +L
Sbjct: 432 QAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLT-ILNDIL 490
Query: 667 LLSRNERGHGSSNVAK---VAEQLLDSHRAQLGGK------RIELILEDKHDLTVNAPES 819
S E G + +V+ LL+S + G+ R+ + D +
Sbjct: 491 DYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPR 550
Query: 820 ALSVALGNLIGNAVKYTLEGRVTVRVL----EKAVEIQDTGPGLSEQDAAKLFQRGYRGT 987
+ + NL+ NA+++T EG + +R + VE++D+G G+ A++FQ +
Sbjct: 551 RIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQ-- 608
Query: 988 HAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
+G G G+GL+I SRL G ++S G LR
Sbjct: 609 VSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLR 649
>gi|2507382|sp|P39453|TORS_ECOLI SENSOR PROTEIN TORS >gi|1787227
(AE000201) sensor protein torS (regulator TorR)
[Escherichia coli] >gi|4062710|dbj|BAA36135| (D90736)
Sensor protein torS (EC 2.7.3.-). [Escherichia coli]
Length = 904
Score = 62.1 bits (148), Expect = 8e-09
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 13/208 (6%)
Frame = +1
Query: 487 QRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALL 666
Q F A +SHE+RTPL I G +LL P ++ + E + ++ +L
Sbjct: 432 QAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLT-ILNDIL 490
Query: 667 LLSRNERGHGSSNVAK---VAEQLLDSHRAQLGGK------RIELILEDKHDLTVNAPES 819
S E G + +V+ LL+S + G+ R+ + D +
Sbjct: 491 DYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPR 550
Query: 820 ALSVALGNLIGNAVKYTLEGRVTVRVL----EKAVEIQDTGPGLSEQDAAKLFQRGYRGT 987
+ + NL+ NA+++T EG + +R + VE++D+G G+ A++FQ +
Sbjct: 551 RIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQ-- 608
Query: 988 HAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
+G G G+GL+I SRL G ++S G LR
Sbjct: 609 VSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLR 649
>gi|1122445 (U38666) ethylene receptor [Solanum lycopersicum]
>gi|1586409|prf||2203452A never-ripe gene [Lycopersicon
esculentum]
Length = 635
Score = 62.1 bits (148), Expect = 8e-09
Identities = 65/219 (29%), Positives = 108/219 (48%), Gaps = 36/219 (16%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALD ++ +F A ++HE+RTP+ + LLL + ++ P+
Sbjct: 320 DQLMEQNIALDVARQEAEMAIRARNDFLAVMNHEMRTPMHAVIALCSLLL-ETDLTPEQR 378
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G +G+ N+ + + ++ + K++
Sbjct: 379 VMIETILKSSNLLATLINDVLDLSRLEDGILELENGTFNLHGILREAVNLIKPIASLKKL 438
Query: 769 ELILEDKHDLTVNAPESA--LSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
+ L DL + A A L L N+ GNAVK+T EG +++
Sbjct: 439 SITLALALDLPILAVGDAKRLIQTLLNVAGNAVKFTKEGHISIEASVAKPEYARDCHPPE 498
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQR--GYRGTHAGHSQGGGIGLSIVSRLC 1044
V+++DTG G+S QD +F + R T + G G+GL+I R
Sbjct: 499 MFPMPSDGQFYLRVQVRDTGCGISPQDIPLVFTKFAESRPTSNRSTGGEGLGLAICRRFI 558
Query: 1045 DLYG---WKVSVQPG 1080
L W S PG
Sbjct: 559 QLMKGNIWIESEGPG 573
>gi|984157|emb|CAA90808| (Z54099) ethylene receptor [Lycopersicon
esculentum]
Length = 519
Score = 62.1 bits (148), Expect = 8e-09
Identities = 65/219 (29%), Positives = 108/219 (48%), Gaps = 36/219 (16%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E ALD ++ +F A ++HE+RTP+ + LLL + ++ P+
Sbjct: 204 DQLMEQNIALDVARQEAEMAIRARNDFLAVMNHEMRTPMHAVIALCSLLL-ETDLTPEQR 262
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRI 768
+ + LI +L LSR E G +G+ N+ + + ++ + K++
Sbjct: 263 VMIETILKSSNLLATLINDVLDLSRLEDGILELENGTFNLHGILREAVNLIKPIASLKKL 322
Query: 769 ELILEDKHDLTVNAPESA--LSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
+ L DL + A A L L N+ GNAVK+T EG +++
Sbjct: 323 SITLALALDLPILAVGDAKRLIQTLLNVAGNAVKFTKEGHISIEASVAKPEYARDCHPPE 382
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQR--GYRGTHAGHSQGGGIGLSIVSRLC 1044
V+++DTG G+S QD +F + R T + G G+GL+I R
Sbjct: 383 MFPMPSDGQFYLRVQVRDTGCGISPQDIPLVFTKFAESRPTSNRSTGGEGLGLAICRRFI 442
Query: 1045 DLYG---WKVSVQPG 1080
L W S PG
Sbjct: 443 QLMKGNIWIESEGPG 457
>gi|3320466 (AF071215) RcsC [Proteus mirabilis]
Length = 507
Score = 61.7 bits (147), Expect = 1e-08
Identities = 57/225 (25%), Positives = 108/225 (47%), Gaps = 13/225 (5%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXX 615
++ R+L + ++ + Q F A VSHELRTPL I G ELL + + + +
Sbjct: 22 KMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLTQ-NEETARLLK 80
Query: 616 XXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIEL-- 774
+ +I +L S+ E N +V ++ ++ + K + +
Sbjct: 81 TMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKKDLAIYC 140
Query: 775 ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA----VEIQDTGPGLS 942
+E VN + + NL+ N++K+T G +T+ + +I DTG G++
Sbjct: 141 FIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTGCITLHLYRDEYYLYFDIHDTGRGIN 200
Query: 943 EQDAAKLFQRGYRGTH--AGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
E+ +LF+ ++ + S+G G+GL+I +L +L +SV ++ G T+R
Sbjct: 201 EKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVGSRFTVR 258
>gi|3980224|emb|CAA10326.1| (AJ131213) sensory histidine kinase
[Streptomyces coelicolor A3(2)]
>gi|4585591|emb|CAB40859.1| (AL049628) putative
[Streptomyces coelicolor]
Length = 507
Score = 61.7 bits (147), Expect = 1e-08
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 1/215 (0%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
DE ++ARA+D + L + ++ +R AD++HELRTP+ + A ELL P P
Sbjct: 239 DETDDVARAVDAMADALQQRIEAERRVTADIAHELRTPVTGLLTAAELL---PPGRP--- 292
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLL-DSHRAQLGGKRIELIL 780
+ L+ +L ++R + G+S A++ + +L D ++ K + +
Sbjct: 293 --TELVLDRAKAMRTLVEDVLEVARLD---GASERAELQDIMLGDFVSRRVAAKDPAVEV 347
Query: 781 EDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVEIQDTGPGLSEQDAAK 960
H+ V L L NL+ NA ++ V V V + + ++D GPG E A+
Sbjct: 348 RVIHESEVTTDPRRLERVLFNLLANAARHG-RSPVEVSVEGRVIRVRDHGPGFPEDLLAE 406
Query: 961 LFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVS 1068
R G+ +G G+GL+I + + G +++
Sbjct: 407 GPSRFRTGSTDRAGRGHGLGLTIAAGQARVLGARLT 442
>gi|2388949|emb|CAB11683.1| (Z98978) putatve sensory transduction
histidine kinase. [Schizosaccharomyces pombe]
Length = 2310
Score = 61.3 bits (146), Expect = 1e-08
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 34/204 (16%)
Frame = +1
Query: 502 FNADVSHELRTPLAVIRGATELL----LTKPEMDPKXXXXXXXXXXAEQQCSDLIGALL- 666
F A++SHELRTP + G LL L + + D A+Q C+ L+ +
Sbjct: 1757 FLANMSHELRTPFSSFYGMLSLLSDTKLNEEQYD--------IVSTAKQSCTSLVQIIDD 1808
Query: 667 LLSRNERGHGS-----SNVAKVAEQLLDSHRA---QLGGKRIELILEDKHDLTVNAP--- 813
LL+ +E G V V E + D L K +++ +D+ N P
Sbjct: 1809 LLNFSELKSGKMKLEPDKVFDVEENIADCIELVYPSLSSKPVQI----SYDIYPNVPALL 1864
Query: 814 ---ESALSVALGNLIGNAVKYTLEGRVTVRVL-------------EKAVEIQDTGPGLSE 945
+ L + NL+GN+VK+T EG + +R + + EI+DTG GL E
Sbjct: 1865 AGDSAKLRQVITNLLGNSVKFTTEGHILLRCMAIDEEINAEENQCKLRFEIEDTGIGLKE 1924
Query: 946 QDAAKLFQ--RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
+ LF G+ G G+GLSI ++C + + VQ YG +T F
Sbjct: 1925 EQLKLLFNPFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDIGVQ--SVYGEGSTFWF 1980
>gi|3581851|emb|CAA20807| (AL031541) putative two-component sensor
[Streptomyces coelicolor]
Length = 379
Score = 61.3 bits (146), Expect = 1e-08
Identities = 71/220 (32%), Positives = 108/220 (48%), Gaps = 25/220 (11%)
Frame = +1
Query: 454 DDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPE--MDPKXXXXXXXXXX 627
D + R TE + E A V+HELR+PL ++G T LL K E D +
Sbjct: 139 DTEARRRTE--RSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDA 196
Query: 628 AEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELIL-----EDKH 792
+ + LI LL +SR + G +V Q +D A G+ I+ + D+
Sbjct: 197 DADRVTRLIAELLDISRIDSGR-----LEVRRQPVDIGAAV--GRHIQAYVASGLEADRF 249
Query: 793 DLTVNAP-------ESALSVALGNLIGNAVKYTLEGRVTVRVLEKA-----------VEI 918
L + P + L NL+ NAV++ EG VT+ V A V +
Sbjct: 250 LLRLAQPLPDLWADPDKVDQVLSNLLENAVRHG-EGTVTIDVTPTASPREGEDTGTSVTV 308
Query: 919 QDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
D G G+ E+ ++F R +RG+ G G G+GL IV + + +G ++V G + G
Sbjct: 309 SDEGAGIPEESMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITV--GRAPGGG 363
Query: 1099 ATLRF 1113
A RF
Sbjct: 364 AEFRF 368
>gi|3122318|sp|P94608|KDPD_CLOAB SENSOR PROTEIN KDPD >gi|1747434
(U39673) KdpD [Clostridium acetobutylicum]
Length = 900
Score = 61.3 bits (146), Expect = 1e-08
Identities = 67/226 (29%), Positives = 112/226 (48%), Gaps = 28/226 (12%)
Frame = +1
Query: 421 DDEVGELARALD--------DYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT 576
D G++A ALD + S E + R +SH+LR+PLA I+GA +L
Sbjct: 645 DTVTGQIAIALDREILSKEQEKSKVEIERERLRRNLLRSISHDLRSPLAGIKGAASTILE 704
Query: 577 KPEMDPKXXXXXXXXXXAEQQCSDLIGALL--LLSRNERGHGSSNVAKVAEQLLD--SHR 744
E+ + E ++ + L+ LLS + G++ + K E + + S
Sbjct: 705 NGELIDEKRKQELINGIYED--TEWLIRLIENLLSMTKFDEGNTKIKKDVELVEEVVSEA 762
Query: 745 AQLGGKRIELILEDKHDLTVNAPESALSVALG---------NLIGNAVKYTLEG-RVTVR 894
Q K + H + V+ PE + V++ NL+ NA K++ +G + ++
Sbjct: 763 VQRSSKYFK-----NHKIKVSVPEDVIMVSMDGSLIEQVIINLLDNASKFSPKGSTIEIK 817
Query: 895 VLEK----AVEIQDTGPGLSEQDAAKLFQRGY-RGTHAGHSQGG-GIGLSIVSRLCDLYG 1056
V EK EI D G G+SE +F R + G+ S+ G G+GL+I + + +G
Sbjct: 818 VYEKKKDVVFEIIDEGQGISEDILPNIFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHG 877
Query: 1057 WKVSVQPGDSYGVI 1098
K+ S G I
Sbjct: 878 GKIEAVNKGSGGAI 891
>gi|730806|sp|P39664|SPHS_SYNP7 SENSOR PROTEIN SPHS
>gi|421361|pir||S32932 regulatory protein sphR -
Synechococcus sp. (PCC 7942) >gi|391922|dbj|BAA02454|
(D13172) SphS [Synechococcus sp.]
Length = 415
Score = 60.9 bits (145), Expect = 2e-08
Identities = 60/227 (26%), Positives = 105/227 (45%), Gaps = 19/227 (8%)
Frame = +1
Query: 394 PKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLL 573
P+P+ G++ ++D L ++ Q+ + +DV+HEL+TPL IR E L
Sbjct: 138 PRPVQGQAIPLSNGQIGVLIED-RQELVDLAQQRNRWVSDVAHELKTPLTSIRLLAEALR 196
Query: 574 TKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAE--QLLDSHRA 747
+ + +P+ Q+ L+ LL LSR E+G + + LL S R
Sbjct: 197 DRLQDEPQVWVDRLLGET--QRLGQLVQDLLELSRLEQGPSGLQKLEAVDLVALLTSVRN 254
Query: 748 QL----GGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK--- 906
L R+ + V L NL+ NA++++ G L +
Sbjct: 255 SLEPLAEPLRLGWAYQGPEQGFVRGDRQRLFRLWLNLVDNAIRHSPSGGCLYVELRQRGD 314
Query: 907 --AVEIQDTGPGLSEQDAAKLFQRGYRG--------THAGHSQGGGIGLSIVSRLCDLYG 1056
++ D GPG ++ D LF+R YRG + S G G+GL+I ++ + +
Sbjct: 315 TWICDLYDDGPGFADADLPYLFERFYRGDPSRVRPAAASSSSPGSGLGLAIARQVVEAHQ 374
Query: 1057 WKVSVQ 1074
++S +
Sbjct: 375 GRISAR 380
>gi|1653819|dbj|BAA18730| (D90916) sensory transduction histidine
kinase [Synechocystis sp.]
Length = 297
Score = 60.9 bits (145), Expect = 2e-08
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 13/213 (6%)
Frame = +1
Query: 469 RLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPE--MDP-KXXXXXXXXXXAEQQ 639
R E+ + F + SHE RTPL+ A +LL +DP K + +
Sbjct: 61 REKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKN 120
Query: 640 CSDLIGALLLLSRNERGHGSSN-----VAKVAEQLLDSHRAQLGGKRIELILEDKHDLTV 804
L+ +L+++R E G N + + +Q ++ + + + + D
Sbjct: 121 MVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKA 180
Query: 805 NAPESALSVALGNLIGNAVKYTLEG---RVTVRVLEKAV--EIQDTGPGLSEQDAAKLFQ 969
E + L NL+ NA+KY+ G ++ + + + + E+ D G G+S +D ++F+
Sbjct: 181 LVDERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFE 240
Query: 970 RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
+RG + + G G+GL + + DL+ + ++ G T+
Sbjct: 241 PFHRGKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTI 286
>gi|4164161|dbj|BAA37137| (AB015497) ethylene response sensor
[Passiflora edulis]
Length = 637
Score = 60.9 bits (145), Expect = 2e-08
Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 35/227 (15%)
Frame = +1
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXX 603
D++ E AL + +F A ++HE+RTP+ I + LLL + E+ P+
Sbjct: 322 DQLMEQNVALKSARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLL-ETELTPEQR 380
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAK-----VAEQLLDSHRAQLGGKRI 768
+ + L +L LSR E G +VA + ++++ + K++
Sbjct: 381 AMIETVLKSSNLLATLTNDVLDLSRLEDGSLELDVAMFNLHDIFREVINLIKPIASVKKL 440
Query: 769 ELILEDKHDLTVNA--PESALSVALGNLIGNAVKYTLEGRVTVRV--------------- 897
L L D A E L + N++GNAVK+T EG V++
Sbjct: 441 ALTLTTTPDPPSFAVGDEKRLMQTILNVVGNAVKFTKEGSVSIIASVAKPDSLRDWRPPE 500
Query: 898 ---------LEKAVEIQDTGPGLSEQDAAKLFQRGYR---GTHAGHSQGGGIGLSIVSRL 1041
++++D+G G+ QD LF + R G++ G S G G+GL+I R
Sbjct: 501 FYPISTDGHFYLRIQVKDSGCGILPQDIPLLFTKFIRPQSGSNRG-SSGAGLGLAICKRF 559
Query: 1042 CDLYGWKVSVQ-PGDSYGVIAT 1104
L G + ++ G + G + T
Sbjct: 560 VSLMGGHIWIESEGLNKGTVVT 581
>gi|585055|sp|Q03228|DIVJ_CAUCR HISTIDINE PROTEIN KINASE DIVJ
>gi|144219 (M98873) histidine protein kinase [Caulobacter
crescentus]
Length = 596
Score = 60.9 bits (145), Expect = 2e-08
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%)
Frame = +1
Query: 502 FNADVSHELRTPLAVIRGATELLLTK--PEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
F A++SHELRTPL I G ++++ + + + + DLI +L +S
Sbjct: 331 FLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVLDMS 390
Query: 676 RNE-------RGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVA 834
+ E RG + A A L ++ G ++ +L +L V+A AL
Sbjct: 391 KIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVL-PPGELEVDADRRALKQI 449
Query: 835 LGNLIGNAVKYTLE-GRVTVR------VLEKAVEIQDTGPGLSEQDAAKLFQRGYR--GT 987
+ NL+ NA+K+T G+VTV VLE + + DTG G+S +D +L R Y G
Sbjct: 450 VLNLVSNALKFTPRGGQVTVTAHGYDGVLE--IVVADTGVGISPEDLERL-GRPYEQAGG 506
Query: 988 HAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
++G G+GLS+V L G ++ ++ G ++R
Sbjct: 507 AEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVR 547
>gi|420780|pir||A46414 histidine protein kinase divJ - Caulobacter
crescentus
Length = 596
Score = 60.9 bits (145), Expect = 2e-08
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%)
Frame = +1
Query: 502 FNADVSHELRTPLAVIRGATELLLTK--PEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
F A++SHELRTPL I G ++++ + + + + DLI +L +S
Sbjct: 331 FLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVLDMS 390
Query: 676 RNE-------RGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVA 834
+ E RG + A A L ++ G ++ +L +L V+A AL
Sbjct: 391 KIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVL-PPGELEVDADRRALKQI 449
Query: 835 LGNLIGNAVKYTLE-GRVTVR------VLEKAVEIQDTGPGLSEQDAAKLFQRGYR--GT 987
+ NL+ NA+K+T G+VTV VLE + + DTG G+S +D +L R Y G
Sbjct: 450 VLNLVSNALKFTPRGGQVTVTAHGYDGVLE--IVVADTGVGISPEDLERL-GRPYEQAGG 506
Query: 988 HAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
++G G+GLS+V L G ++ ++ G ++R
Sbjct: 507 AEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVR 547
>gi|1168485|sp|P22763|ARCB_ECOLI AEROBIC RESPIRATION CONTROL SENSOR
PROTEIN ARCB >gi|606149|gb|AAA58012.1| (U18997) protein
kinase [Escherichia coli] >gi|1789603 (AE000400) aerobic
respiration sensor-response protein; histidine protein
kinase/phosphatase, sensor for arcA [Escherichia coli]
Length = 776
Score = 60.5 bits (144), Expect = 2e-08
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 16/216 (7%)
Frame = +1
Query: 460 YSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQ 639
Y L + F + +SHELRTPL I G + +LL E+ + +
Sbjct: 272 YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT-ELTAEQEKYLKTIHVSAVT 330
Query: 640 CSDLIGALLLLSRNERGHGSSNVAKVAE-------QLLDSHRAQLGGKRIEL--ILEDKH 792
++ ++ + + ER + V + L + +AQ G R L L H
Sbjct: 331 LGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPH 390
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA-----VEIQDTGPGLSEQDAA 957
+ + + L L NLI NAVK+T +G+VTVRV E++D+G G+ + +
Sbjct: 391 QVITDG--TRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELD 448
Query: 958 KLFQRGY--RGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
K+F Y + +H G GIGL++ RL G ++V G TL
Sbjct: 449 KIFAMYYQVKDSHGG-KPATGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTL 499
>gi|541207|pir||S41888 envZ protein - Salmonella typhi
Length = 450
Score = 60.5 bits (144), Expect = 2e-08
Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 6/239 (2%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGA 558
G+ P PL + EV + RA + ++ + ++ A VSH+LRTPL IR A
Sbjct: 197 GKGIIPPPLR-EYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLA 255
Query: 559 TELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDS 738
TE+ M + ++C+ +I + R + +A + L +
Sbjct: 256 TEM------MGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQ-EMPMEMADLNSVLGEV 308
Query: 739 HRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA--- 909
A+ G +R + V ++ A+ N++ NA +Y G ++V
Sbjct: 309 IAAESGYEREINTALQAGSIQVKMHPLSIKRAVANMVVNAARY---GNCWIKVSSGTESH 365
Query: 910 ---VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPG 1080
+++D GPG+ + LFQ RG A + G G+GL+IV R+ D + + +
Sbjct: 366 RAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRIIDNHNGMLEIGTS 425
Query: 1081 DSYGV 1095
+ G+
Sbjct: 426 ERGGL 430
>gi|1352371|sp|P41406|ENVZ_SALTI OSMOLARITY SENSOR PROTEIN ENVZ
>gi|587571|emb|CAA55077| (X78270) envZ [Salmonella typhi]
>gi|602090|emb|CAA54511| (X77305) envZ [Salmonella typhi]
Length = 450
Score = 60.5 bits (144), Expect = 2e-08
Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 6/239 (2%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGA 558
G+ P PL + EV + RA + ++ + ++ A VSH+LRTPL IR A
Sbjct: 197 GKGIIPPPLR-EYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLA 255
Query: 559 TELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDS 738
TE+ M + ++C+ +I + R + +A + L +
Sbjct: 256 TEM------MGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQ-EMPMEMADLNSVLGEV 308
Query: 739 HRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA--- 909
A+ G +R + V ++ A+ N++ NA +Y G ++V
Sbjct: 309 IAAESGYEREINTALQAGSIQVKMHPLSIKRAVANMVVNAARY---GNCWIKVSSGTESH 365
Query: 910 ---VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPG 1080
+++D GPG+ + LFQ RG A + G G+GL+IV R+ D + + +
Sbjct: 366 RAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRIIDNHNGMLEIGTS 425
Query: 1081 DSYGV 1095
+ G+
Sbjct: 426 ERGGL 430
>gi|6458916|gb|AAF10748.1|AE001967_1 (AE001967) sensor histidine
kinase/response regulator [Deinococcus radiodurans]
Length = 383
Score = 60.1 bits (143), Expect = 3e-08
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 10/220 (4%)
Frame = +1
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
L+ + +L E + + F A+ SHELRTPL + G L + E +
Sbjct: 159 LEVQARQLEEALNLQKTFLAETSHELRTPLTALLG----YLRRAEREAGGSQVLQDAQRV 214
Query: 631 EQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIEL-----ILEDKHD 795
+ + L+ LL LSR E Q ++ H LG ++ + D D
Sbjct: 215 AENMTRLVNDLLQLSRGE-----------LVQSIEMHFVNLGNVLRQVGRDYGVEADAAD 263
Query: 796 LTVNAPESALSVALGNLIGNAVKYT-----LEGRVTVRVLEKAVEIQDTGPGLSEQDAAK 960
+ L+ NL+ N ++ + ++ + +R E V + D GPG+ + +
Sbjct: 264 CEIVGDPGRLTQVFANLVSNGIRVSGGPDKVQLVLNLRPGEAEVLVVDHGPGVPDDIKPR 323
Query: 961 LFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
+F + YRG AG G+GL+I ++ + + V D+ G AT R
Sbjct: 324 IFDKFYRGKEAG---SAGLGLTIAQQVVTAHAGAIDVL--DTPGGGATFR 368
>gi|1350837|sp|P49246|RPFC_XANCP SENORY/REGULATORY PROTEIN RPFC
>gi|95021|pir||S16003 rpfC protein - Xanthomonas
campestris
Length = 677
Score = 60.1 bits (143), Expect = 3e-08
Identities = 76/286 (26%), Positives = 126/286 (43%), Gaps = 21/286 (7%)
Frame = +1
Query: 241 GERQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFP 420
G L+ A + L F G L+ +W A+ P LL P +
Sbjct: 73 GSNYLRAATAMGSLCFLGAILISPYWLAN----PYLSWGLLLGLIA---------VPLYF 119
Query: 421 DDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKX 600
D + + RA+ + Q F A++SHE RTPL + G TE+L T +D +
Sbjct: 120 DSLLRAMTRAVRE----ARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLAT-TRLDAEQ 174
Query: 601 XXXXXXXXXAEQQCSDLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKR 765
+ + L+ +L +S E G ++ ++ + + Q G+R
Sbjct: 175 KEKLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRR 234
Query: 766 IEL---ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRV------LEKAV-- 912
+E + +D DL + + L L NL+GNAVK+T G V +RV E AV
Sbjct: 235 LEYGTQVADDVPDL-LKGDTAHLRQVLLNLVGNAVKFTEHGHVLLRVTRVSGSAEDAVRL 293
Query: 913 --EIQDTGPGLSEQDAAKLFQRGYRGTHAGHS---QGGGIGLSIVSRLCDLYGWKVSVQP 1077
+++DTG G+ +LF+ + G S +G G+G +I L + G + +
Sbjct: 294 RFDVEDTGIGVPMDMRPRLFE-AFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFKE 352
Query: 1078 GDSYGVI 1098
G +
Sbjct: 353 NQPSGSV 359
>gi|6458613|gb|AAF10470.1|AE001942_2 (AE001942) sensor histidine
kinase [Deinococcus radiodurans]
Length = 369
Score = 60.1 bits (143), Expect = 3e-08
Identities = 71/260 (27%), Positives = 111/260 (42%), Gaps = 11/260 (4%)
Frame = +1
Query: 277 VLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDD--EVGELARA 450
+L+ LS +IG+ + +++P+ L L G A DD E+ L RA
Sbjct: 75 MLLVGLLSAVIGYVLSGALLRPLHRLE--LEVSEGD------FAQFHADDPREIRSLRRA 126
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
+RL R F A + H+L+TPL T L P D +
Sbjct: 127 FGSLMTRLGTEQTRRNAFMATLVHDLKTPLIATGHLTRALTELPLPDDEKRAVGQEIQTE 186
Query: 631 EQQCSDLIGALLLLSRNERGHGSSNVA-----KVAEQLLDSHRAQLGGKRIELILEDKHD 795
++ L+ + R ER ++A +VAEQ R Q + + L +
Sbjct: 187 TERLLALVQQMADAHRFERDDVQLHLAPGDLREVAEQAARRLRPQAEARGLSLHVSGSGQ 246
Query: 796 LTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVEIQDTGPGLSE--QDAAKLF- 966
++A +AL A+GNL NA++Y V + + +QD GPGLS D A+ F
Sbjct: 247 AEIDA--AALERAVGNLTENALRYA-RHEVRLTAAPGLLRVQDDGPGLSASLDDLAQPFN 303
Query: 967 -QRGYRGTHAGHSQGGGIGLSIVSRLCDLYG 1056
Q + G+GL IV R+ + +G
Sbjct: 304 AQPAVIAGQQYTAGTAGLGLFIVRRIAEAHG 334
>gi|2460283 (AF024654) hybrid histidine kinase DHKB [Dictyostelium
discoideum]
Length = 1969
Score = 60.1 bits (143), Expect = 3e-08
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Frame = +1
Query: 457 DYSSRLTEVVQRDRE-FNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE 633
DY+ R E + F VSHELRTP+ + + ++L + +D +
Sbjct: 948 DYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADIL-ERTTLDSTQKEFLNCIKLSG 1006
Query: 634 QQCSDLIGALLLLSRNERGHGSS-----NVAKVAEQLLDSHRAQLGGKRIELIL--EDKH 792
DLI +L S+ E G ++ K+ + + + K ++L + +
Sbjct: 1007 NYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNIYEKGLDLFIFIDPNV 1066
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAV-----------EIQDTGPGL 939
+ VN + + L N + N++K+T G++ +RV K V +++D+G G+
Sbjct: 1067 PVIVNGDQRRIKQILLNFLSNSIKFTNHGQIIIRV--KLVTDDSTHSLIKFDVEDSGIGI 1124
Query: 940 SEQDAAKLFQRGYRGTHAGHSQ---GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
+ LF + +G+S+ G G+GLSI RLC + G V V+ +GV +T
Sbjct: 1125 KTEHLNPLFA-SFSQIDSGNSRKYRGTGLGLSISKRLCKMMGGDVKVK--SEFGVGSTFS 1181
Query: 1111 F 1113
F
Sbjct: 1182 F 1182
>gi|119395|sp|P08982|ENVZ_SALTY OSMOLARITY SENSOR PROTEIN ENVZ
>gi|79091|pir||S01367 inner membrane protein envZ -
Salmonella typhimurium >gi|47665|emb|CAA30935| (X12374)
envZ inner membrane protein (AA 1 - 450) [Salmonella
typhimurium]
Length = 450
Score = 59.7 bits (142), Expect = 4e-08
Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 6/239 (2%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGA 558
G+ P PL + EV + RA + ++ + ++ A VSH+LRTPL IR A
Sbjct: 197 GKGIIPPPLL-EYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLA 255
Query: 559 TELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDS 738
TE+ M + ++C+ +I + R + +A + L +
Sbjct: 256 TEM------MGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQ-EMPMEMADLNSVLGEV 308
Query: 739 HRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA--- 909
A+ G +R + V ++ A+ N++ NA +Y G ++V
Sbjct: 309 IAAESGYEREINTALQAGSIQVKMHPLSIKRAVANMVVNAARY---GNGWIKVSSGTESH 365
Query: 910 ---VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPG 1080
+++D GPG+ + LFQ RG A + G G+GL+IV R+ D + + +
Sbjct: 366 RAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRIIDNHNGMLEIGTS 425
Query: 1081 DSYGV 1095
+ G+
Sbjct: 426 ERGGL 430
>gi|6137053|emb|CAB59608.1| (AL132662) putative histidine kinase
protein [Streptomyces coelicolor A3(2)]
Length = 442
Score = 58.9 bits (140), Expect = 7e-08
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 16/229 (6%)
Frame = +1
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEM--DPKX 600
E+ E A + + R+ +++ +RE AD+SH LRTPL T L L M P
Sbjct: 199 ELQEAGAAFNTMADRVVDLLAVERELVADLSHRLRTPL------TALYLEADRMGATPSA 252
Query: 601 XXXXXXXXXAEQQCSDLIGALL--LLSRNERGHGSS-----NVAKVAEQLLD--SHRAQL 753
E++ +I A L + G G+ +VA+V LD S A
Sbjct: 253 LRVTEAAGQLERELDSIIAAARTPLAAAQLAGTGAGTAKPCDVAEVVAMRLDFWSVLAAQ 312
Query: 754 GGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVLEK----AVEI 918
+ E L + V PE L+ + LIGN ++T +G R VRV + + +
Sbjct: 313 QDRPFERSLTPR-PAPVAFPEDDLAAVVDALIGNVFRHTPQGTRFVVRVERRDRHVRLTV 371
Query: 919 QDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
D GPG+++ +AA RG G S G+GL IV+R ++++ G
Sbjct: 372 DDAGPGVADPEAALT-----RGVSVGGST--GLGLDIVARAARTADGELTITRAPLGGAR 424
Query: 1099 ATLRF 1113
T+ F
Sbjct: 425 VTVSF 429
>gi|6226707|sp|P33113|SPAK_BACSU SUBTILIN BIOSYNTHESIS SENSOR PROTEIN
SPAK >gi|2702244 (U09819) SpaK [Bacillus subtilis]
Length = 459
Score = 58.9 bits (140), Expect = 7e-08
Identities = 68/256 (26%), Positives = 115/256 (44%), Gaps = 17/256 (6%)
Frame = +1
Query: 304 LIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPD-----DEVGELARALDDYSS 468
+I + A+++ K L + R + Q P H + D + E+ AL
Sbjct: 170 IITTYFANRLRKHFETLNVITRYIKEQNLQFTPEFTHIKEFDDVIDSLIEMRDALQSSLE 229
Query: 469 RLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSD 648
L + + +E ++HE++ P+ +I+G ELL + + + A Q
Sbjct: 230 ALWRLEKNKKEQIGALAHEIKIPITIIKGNAELLSLSMQ-NEEQAEYTKYILGAGNQIEQ 288
Query: 649 LIGALLLLSRNERG----HGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNA-- 810
I L+ LS+ E ++V ++ E L+ A G K I + + K +L A
Sbjct: 289 YIYQLIHLSKTEDALTIHLEKASVDELTETLVKDISAYKGNKNINISFK-KENLMKEAKI 347
Query: 811 PESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVEI-----QDTGPGLSEQDAAKLFQRG 975
L AL N++ NAV YT EG E EI +DTG G SE K +
Sbjct: 348 DWQLLHRALLNILTNAVDYTPEGGTVSVHAECDSEIFYFFVKDTGNGFSEMGLKKATELF 407
Query: 976 YRGTHAGHSQGG-GIGLSIVSRLCDLYGWKVSV 1071
Y + HS+G G+GL+ +L+ ++++
Sbjct: 408 YMDDKSRHSKGHYGMGLTFAKNAVNLHNGELTL 440
>gi|2120819|pir||S58233 PopQ protein - Rhizobium leguminosarum
>gi|929823|emb|CAA62009| (X89983) FeuQ [Rhizobium
leguminosarum]
Length = 467
Score = 58.9 bits (140), Expect = 7e-08
Identities = 64/287 (22%), Positives = 122/287 (42%), Gaps = 16/287 (5%)
Frame = +1
Query: 247 RQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDD 426
R +LY+++ F SL++ + +KP+ R + + L FP
Sbjct: 167 RTFSHSLYLALAGFGVGSLIVNALAILYGLKPLDKARAAWERIRAGES--EQLKGDFPR- 223
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
E+ LA ++ +V+R R +++H L+TP+AV+ +L
Sbjct: 224 EILPLANEVNALIDSNRRIVERARMQVGNLAHSLKTPIAVLLNEARVL-----EKSHGEL 278
Query: 607 XXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILED 786
+ Q + + ++ E ++ E+L+ R +L++
Sbjct: 279 VRSQAEAMQGQVQSYLNRARIAAQRESVLARTDAEPALERLVRVMRRLNVDTEFDLVVSP 338
Query: 787 KHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA----------------VEI 918
H L V + L +GNL+ NA ++ + RV + +E A + +
Sbjct: 339 PH-LAVAMEQQDLEETVGNLLENAARFA-KSRVRLSAVEAAEDVKGVEASARRHWVELAV 396
Query: 919 QDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVI 1098
+D GPGL + +RG R + G G+GLSIV+ + + Y ++ + G+ G+
Sbjct: 397 EDDGPGLEPDQIREALKRGRRSNES--KPGTGLGLSIVTEISNEYQGRLELSRGEWGGLK 454
Query: 1099 ATL 1107
A L
Sbjct: 455 AKL 457
>gi|2353767 (AF016236) DMSO/TMAO-sensor kinase [Rhodobacter
sphaeroides]
Length = 815
Score = 58.9 bits (140), Expect = 7e-08
Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 16/203 (7%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSR 678
+F A +SHE+RTP+ I G TE LL + E+ + + + + ++ +L +R
Sbjct: 317 DFLATMSHEIRTPIHSIGGVTE-LLKQSELASRDRGYVDAIERSTEVLASIVSDVLDYAR 375
Query: 679 NERGHGS-SNVAKVAEQLLDS---HRAQLGGKRIEL-ILEDKHDLTV--NAPESALSVAL 837
E G V +Q+LD L ++ +L I+ ++ DL +++L L
Sbjct: 376 IESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQLRIVIERTDLPAGPGKMQASLRQIL 435
Query: 838 GNLIGNAVKYTLEGRVTVRVLEKA------VEIQDTGPGLSEQDAAKLFQRGYRGTHAGH 999
NL NAVK+T EG V + A + DTGPG++ + ++F + Y + +
Sbjct: 436 INLTSNAVKFTPEGTVVIGAERLAGGHRFRFTVSDTGPGIAAEKLEEIF-KPYIQSDSSI 494
Query: 1000 SQ---GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
S+ G G+GL+I RL G ++ V+ +G TL
Sbjct: 495 SRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFGSRFTL 533
>gi|1574212 (U32818) phosphate regulon sensor protein (phoR)
[Haemophilus influenzae Rd]
Length = 425
Score = 58.6 bits (139), Expect = 1e-07
Identities = 61/218 (27%), Positives = 111/218 (49%), Gaps = 27/218 (12%)
Frame = +1
Query: 460 YSSRLTEVVQRD-----------REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXX 606
Y+S + V+ RD ++F ++++HELRTPL V++G E+L +P
Sbjct: 173 YNSHMILVIARDITDMIHLLNSRQKFLSNINHELRTPLTVLQGYLEILADNNIQNPLQKK 232
Query: 607 XXXXXXXAEQQCSDLIGALLLLSR----NERGHGSSNVAKVAEQL-LDSHRAQLGGKRIE 771
Q+ L+ L++ +++ +++ + L D+ IE
Sbjct: 233 AIXAMQEQSQRMEHLLQQFNFLAKIETTSDKDFRKFDMSAMINSLRKDTDILNTYNHHIE 292
Query: 772 LILEDKHDLTVNAPESALSVALGNLIGNAVKYT---LEGRVTVRVLEKAVE--IQDTGPG 936
I++ ++ + ES L A+ NLI NA+K++ ++ E+ ++ + D G G
Sbjct: 293 FIIQP--NIIIFGNESQLRSAVSNLIYNAIKHSGKQCHIQIQWETCEQGIKFNVIDNGVG 350
Query: 937 LSEQDAAKLFQRGYRGTHA-GHSQGG-GIGLSIVSRLCDLYGWKVSVQ----PGDSYGVI 1098
+S Q L +R YR + H GG G+GL+IV Y ++++ G S+ I
Sbjct: 351 ISPQHIPHLTERFYRVDESRSHLTGGSGLGLAIVKHTLLQYHSHLNIESTETKGSSFSFI 410
Query: 1099 ATLRF 1113
RF
Sbjct: 411 IPKRF 415
>gi|1679757 (U77605) two-component histidine kinase CHK-1 [Glomerella
cingulata] >gi|1679760 (U77606) two-component histidine
kinase CHK-1 [Glomerella cingulata]
Length = 745
Score = 58.6 bits (139), Expect = 1e-07
Identities = 62/216 (28%), Positives = 106/216 (48%), Gaps = 27/216 (12%)
Frame = +1
Query: 466 SRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCS 645
++L E ++ F +++SHE+RTPL I G L ++ + +
Sbjct: 102 AKLKEAMESKSRFLSNMSHEIRTPLIGISGMVS-FLQDTTLNEEQRDYTNTIQTSANSLL 160
Query: 646 DLIGALLLLSRNERG-----HGSSNVAKVAEQLLDSHRAQLGGKRIEL--ILEDKHDLTV 804
+I +L LS+ + G + + + E + + KR+EL I+E+ V
Sbjct: 161 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWV 220
Query: 805 NAPESALSVALGNLIGNAVKYTLEGRVTVR----------------VLEKAVEIQDTGPG 936
+ + L N+IGNA+K+T EG V R +LE AV DTG G
Sbjct: 221 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRIFTNTKSALSNDEIMLEFAV--IDTGRG 278
Query: 937 LSEQDAAKLFQ--RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKV--SVQPGDSYGVIAT 1104
++++A +F+ G+ G G+GL I +L +L+G K+ + PG T
Sbjct: 279 FTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAVPGKGSTFTFT 338
Query: 1105 LRF 1113
+F
Sbjct: 339 AKF 341
>gi|4106623|emb|CAA21378| (AL031866) ORF55, len 803 aa, this ORF is
the prolongation of ORF54, similar to EVGS_ECOLI putative
sensor protein evgS (1197 aa), 30.2% identity in 642 aa
overlap, Fasta scores: opt: 838, E(): 0 or BPBGVAS_2 B.
parapertussis B...
Length = 803
Score = 58.2 bits (138), Expect = 1e-07
Identities = 62/202 (30%), Positives = 99/202 (48%), Gaps = 21/202 (10%)
Frame = +1
Query: 502 FNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRN 681
F A +SHELRTP+ I G EL + P + Q L+ ++ ++
Sbjct: 257 FLATISHELRTPMYAIMGLLELEIRSNR--PVEKDTLVTVSKSAQSLMLLLDDIIDSAKI 314
Query: 682 ERGHGSSNVAKV-----AEQLLDSHR--AQLGGKRIELILEDKHDLTVNAPESALSVALG 840
E G S + V E++ ++ A G R L+D + A + +G
Sbjct: 315 EAGQLSIHPTAVDFHQEMERMFTLYQPIANERGLRFSGWLDDHIPPLLMADMLRVRQVMG 374
Query: 841 NLIGNAVKYTLEGRVTVRVLEKA---------VEIQDTGPGLSEQDAAKLFQRGYRGTHA 993
NL+GNA+K+T +G V+V + + ++I DTG G+S A LFQ + +
Sbjct: 375 NLLGNALKFTEQGSVSVDITWEPSDEQHGVMNIDITDTGIGISPAAQATLFQ-PFSQANE 433
Query: 994 GHSQ---GGGIGLSIVSRLCDLYGWKVSV--QPGDSYGVIATL 1107
G S G G+GL I +L G K+++ Q G ++ TL
Sbjct: 434 GKSPRFGGSGLGLWICHQLIHKMGGKIALESQLGKGTSLLITL 476
>gi|130128|sp|P23837|PHOQ_ECOLI SENSOR PROTEIN PHOQ
>gi|281952|pir||B41966 virulence membrane protein phoQ -
Escherichia coli >gi|216609|dbj|BAA14391| (D90393) PhoQ
protein [Escherichia coli] >gi|1651557|dbj|BAA35951|
(D90748) Virulence membrane protein phoQ. [Escherichia
coli] >gi|1787374 (AE000213) sensor protein PhoQ
[Escherichia coli]
Length = 486
Score = 57.8 bits (137), Expect = 2e-07
Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 9/267 (3%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELA 444
L ++L+ L + WWS ++P+ LAK +R + N + L P E+ L
Sbjct: 199 LSANLLLVIPLLWVAAWWS----LRPIEALAKEVREL--EEHNRELLNPA-TTRELTSLV 251
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXX 624
R L+ E + R D++H L+TPLAV++ L ++ K
Sbjct: 252 RNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSE-----KMSVSDAEPV 306
Query: 625 XAEQ--QCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLG----GKRIELILED 786
EQ + S IG L + G S LLD+ + L K + + L+
Sbjct: 307 MLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDI 366
Query: 787 KHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVLEK--AVEIQDTGPGLSEQDAA 957
+++ ++ +GN++ NA KY LE ++ R ++ + ++D GPG+
Sbjct: 367 SPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKRE 426
Query: 958 KLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
+F RG R G G+GL++ + + Y K+
Sbjct: 427 VIFDRGQRVDTL--RPGQGVGLAVAREITEQYEGKI 460
>gi|2982944 (AE000679) histidine kinase sensor protein [Aquifex
aeolicus]
Length = 339
Score = 57.8 bits (137), Expect = 2e-07
Identities = 50/195 (25%), Positives = 90/195 (45%), Gaps = 5/195 (2%)
Frame = +1
Query: 514 VSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGH 693
V+H+L TPLA I A E L E A C + + LLL +R +
Sbjct: 139 VAHQLNTPLATISLALEEL----EKKCGSCEEIEVIKNALISCKNTVDKLLLFARKDNNK 194
Query: 694 GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTL 873
+ K E +L+ R + + +I ++ + + E+ + + NL+ NA++ +
Sbjct: 195 DLVDTKKAVEDVLELLRVYAKERGV-IIEKELESVYMFGNETDIRHVVLNLVLNAIQASD 253
Query: 874 EGRVTVRVLEKAVE-----IQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSR 1038
G+ L+K E ++D G G+ ++ K+F Y G +G G+GL+IV+
Sbjct: 254 RGKKVRVFLKKEGEELILIVEDEGKGIPPEEVDKIFLPFYHGKDK--REGSGLGLAIVND 311
Query: 1039 LCDLYGWKVSVQPGDSYGVI 1098
+ YG K++++ G I
Sbjct: 312 IVKSYGGKINLRSAPGKGSI 331
>gi|6425101|gb|AAF08300.1| (AF113748) ethylene receptor homolog [Musa
acuminata]
Length = 625
Score = 57.8 bits (137), Expect = 2e-07
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 33/210 (15%)
Frame = +1
Query: 484 VQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGAL 663
++ +F A ++HE++TPL + LLL + E+ P+ + + LI +
Sbjct: 341 IRARNDFLAVMNHEMQTPLHATITLSSLLL-ETELSPEQRSMVETVLKSSSLLATLINDI 399
Query: 664 LLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNA--PESA 822
L LSR E G G N+ V ++++ + K++++ L DL + A E
Sbjct: 400 LDLSRLEDGRLELEIGDFNLHSVFREVMNFIKPIRAVKKLQVSLMLSPDLPLYAIGDEKR 459
Query: 823 LSVALGNLIGNAVKYTLEGRVTV-------------RVLE-----------KAVEIQDTG 930
L + N+ NAV++T EG +++ R L+ V I+DTG
Sbjct: 460 LMQIMLNVAANAVRFTKEGDISLTASVARTDYLREFRALDFYPVASDGHFYLRVTIKDTG 519
Query: 931 PGLSEQDAAKLFQRGYRGTHAGHS--QGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIAT 1104
G+S QD LF + + + G G+GL+I R L + V+ D G T
Sbjct: 520 CGISHQDLPNLFTKFSQSQNVSSQGYSGNGLGLAICERYVSLMQGHIWVE-SDGIGKGCT 578
Query: 1105 LRF 1113
F
Sbjct: 579 ATF 581
>gi|2815357|emb|CAA16480| (AL021530) putative turgor pressure sensor
KdpD [Streptomyces coelicolor]
Length = 848
Score = 57.8 bits (137), Expect = 2e-07
Identities = 56/201 (27%), Positives = 95/201 (46%), Gaps = 10/201 (4%)
Frame = +1
Query: 508 ADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE--QQCSDLIGALLLLSRN 681
A VSH+LRTPLA I+ A L + + E + L+G LL +SR
Sbjct: 619 AAVSHDLRTPLAGIKAAVTSLRSDDVAWSEEDRAELLEGIEEGADRLDHLVGNLLDMSRL 678
Query: 682 ERGHGSSNVAKV-AEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNA 858
+ G + + ++ +++ + EL + + + V L AL NL+ NA
Sbjct: 679 QTGTVTPLIREIDVDEVAPMALGGVPEGSAELDIPETLPM-VAVDAGLLERALANLVENA 737
Query: 859 VKYTLEGR---VTVRVLEKAVEIQ--DTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGL 1023
VKY+ + R V L VE++ D GPG+ ++ ++F+ R A G G+GL
Sbjct: 738 VKYSPDDRTVLVAASALADRVEVRVVDRGPGVPDEAKDRIFEPFQRYGDAPRGAGVGLGL 797
Query: 1024 SIVSRLCDLYGWKVSVQ--PGDSYGVIATLR 1110
++ + G ++ + PG ++ TLR
Sbjct: 798 AVARGFAEAMGGTLNAEDTPGGGLTMVLTLR 828
>gi|119394|sp|P02933|ENVZ_ECOLI OSMOLARITY SENSOR PROTEIN ENVZ
>gi|1070662|pir||MMECZB histidine kinase osmosensor envZ
(EC 2.7.3.-) - Escherichia coli >gi|147006 (J01656) EnvZ
protein [Escherichia coli] >gi|606338|gb|AAA58201.1|
(U18997) CG Site No. 807; alternate names ompB, perA, tpo
[Escherichia coli] >gi|1789808 (AE000416) protein
histidine kinase/phosphatase sensor for OmpR, modulates
expression of ompF and ompC [Escherichia coli]
Length = 450
Score = 57.4 bits (136), Expect = 2e-07
Identities = 60/223 (26%), Positives = 101/223 (44%), Gaps = 7/223 (3%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGA 558
G+ P PL + EV + RA + ++ + ++ A VSH+LRTPL IR A
Sbjct: 197 GKGIIPPPLR-EYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLA 255
Query: 559 TELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDS 738
TE+ M + ++C+ +I + R + +A + L +
Sbjct: 256 TEM------MSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQ-EMPMEMADLNAVLGEV 308
Query: 739 HRAQLGGKR-IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA-- 909
A+ G +R IE L + V ++ A+ N++ NA +Y G ++V
Sbjct: 309 IAAESGYEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARY---GNGWIKVSSGTEP 364
Query: 910 ----VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCD 1047
+++D GPG++ + LFQ RG A G G+GL+IV R+ D
Sbjct: 365 NRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVD 414
>gi|1401270 (U59741) RcaE [Fremyella diplosiphon]
Length = 655
Score = 57.4 bits (136), Expect = 2e-07
Identities = 52/219 (23%), Positives = 104/219 (46%), Gaps = 20/219 (9%)
Frame = +1
Query: 409 PHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT--KP 582
PH D+ + + AL S + + EF + +SHELRTPL + A ++L T
Sbjct: 393 PHLDDENMVKGFFALSSDISDRKAIERMKDEFISIISHELRTPLTSLHSALKILATGRLG 452
Query: 583 EMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRA 747
+ + + ++ L+ +L L R E G + N A + Q ++ +A
Sbjct: 453 TLSTEGQQMLGIADDSTERLVRLVNNVLDLQRIESGKVIMECQACNAANLMIQAAEAMQA 512
Query: 748 QLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEK------- 906
+ + L+ + D++V A + AL NL+ NA+K++ G +E+
Sbjct: 513 MAQQQEVTLV-KQPQDISVWADADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNN 571
Query: 907 ----AVEIQDTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
++D G G+ ++F+R + + + G G+GL+I ++ + + ++
Sbjct: 572 PKEVVFRVRDEGQGIPADQLERIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRI 630
>gi|5006604|gb|AAD37576.1|AF141928_1 (AF141928) ethylene receptor
homolog [Pelargonium x hortorum]
Length = 740
Score = 57.0 bits (135), Expect = 3e-07
Identities = 64/216 (29%), Positives = 106/216 (48%), Gaps = 35/216 (16%)
Frame = +1
Query: 457 DYSSRLTEVVQRDR-EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE 633
D + R E R R +F A ++HE+RTP+ I A LL + ++ + +
Sbjct: 331 DMARREAETAIRARNDFLAVMNHEMRTPMHAII-ALSSLLQETDLTSEQRLMVETILKSS 389
Query: 634 QQCSDLIGALLLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDL 798
+ LI +L LSR E G + N+ V Q+ + + K++ + L DL
Sbjct: 390 NLLATLINDVLDLSRLEDGSLQLDIATFNLHAVFRQVFNLIKPIASVKKLFITLNVSPDL 449
Query: 799 T--VNAPESALSVALGNLIGNAVKYTLEGRVTVRV------------------------L 900
V E L + N++GNAVK++ EG ++V
Sbjct: 450 PEYVIGDEKRLVQIMLNVVGNAVKFSKEGIISVTAFVAKSESVRDPRAPDFFPVSSDNQF 509
Query: 901 EKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAG--HSQGGGIGLSIVSRLCDLYGWKVSV- 1071
V+++D+G G++ QD KLF + + +S G G+GL+I R +L + +
Sbjct: 510 YMRVQVKDSGSGINPQDMPKLFTKFAQSQPVATKNSGGSGLGLAISKRFVNLMDGHIWID 569
Query: 1072 QPGDSYGVIAT 1104
G S G T
Sbjct: 570 SEGPSKGCTVT 580
>gi|2801651|gb|AAB97416.1| (AF042096) putative sensor protein
[Bradyrhizobium japonicum]
Length = 873
Score = 57.0 bits (135), Expect = 3e-07
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 15/223 (6%)
Frame = +1
Query: 445 RALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXX 624
RAL + + L Q +F VS+ELR+PL I G L + P P
Sbjct: 625 RALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFL-SDPSTGPLTPKQAEYLD 683
Query: 625 XAEQQCSDLIGAL----LLLSRNERGH-----GSSNVAKVAEQLLDSHRAQLGGKRIELI 777
+ + L AL L L+ + G G +V+K E + + +L RI L
Sbjct: 684 YVTKSTNALALALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEGIQDRLATDRIRLK 743
Query: 778 LEDKHDL-TVNAPESALSVALGNLIGNAVKYTLEGR---VTVRVLEKAV--EIQDTGPGL 939
+E D+ + E + L NL+ NAV ++ + ++ R E +V + D+GPG+
Sbjct: 744 VEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEHSVVFTVTDSGPGI 803
Query: 940 SEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
K+F + +G G+GLS+V +L+G KV V G + F
Sbjct: 804 PADMKDKVFNWFESRSQGSRHRGAGLGLSLVRSFVELHGGKVRVDSIVGRGTVVICDF 861
>gi|3402275|emb|CAA70147| (Y08950) EnvZ protein [Yersinia
enterocolitica]
Length = 450
Score = 57.0 bits (135), Expect = 3e-07
Identities = 59/239 (24%), Positives = 112/239 (46%), Gaps = 8/239 (3%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGA 558
G+ P PL + EV + RA + ++ + + A VSH+LRTPL IR A
Sbjct: 197 GKGIIPPPLR-EYGASEVRSVTRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLA 255
Query: 559 TELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALL--LLSRNERGHGSSNVAKVAEQLL 732
TE+ M ++C+ +I + L + E S++ V +++
Sbjct: 256 TEM------MSEADGYLSDSINKDIEECNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVI 309
Query: 733 DSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRV----- 897
A+ G +R+ + ++ V+ ++ AL N++ NA +Y + ++V
Sbjct: 310 ---AAESGYERVIETDLCEGEVMVDIHPLSIKRALANMVVNAARYQ---KAKIKVSSGTE 363
Query: 898 LEKA-VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQ 1074
L++A +++D GP + ++ LF RG A + G G+GL+IV R+ D + + +
Sbjct: 364 LQRAWFQVEDDGPRIKPENLNHLFHPFVRGDSARTTIGTGLGLAIVHRIIDAHAGSLDIG 423
Query: 1075 PGDSYGV 1095
+ G+
Sbjct: 424 TSERGGL 430
>gi|1575689 (U70379) histidine protein kinase [Synechococcus PCC7942]
Length = 438
Score = 57.0 bits (135), Expect = 3e-07
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 12/192 (6%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS 675
++F AD +HELRTPLA ++ E + + LI LLLLS
Sbjct: 221 QQFTADAAHELRTPLAALQATVE-----SHQPSEAAQVWPVLERQMTRLQLLIEDLLLLS 275
Query: 676 RNERGHGSSNVAKVAEQLLDSHRAQL----GGKRIELILED-KHDLTVNAPESALSVALG 840
R +R L++ A +I L +E L V+ + L L
Sbjct: 276 RLDRDQPVLGDRCCLNDLVEEAAATFMPLANQAQIALQIEAVGTGLLVSGNSAQLYRVLA 335
Query: 841 NLIGNAVKYTLEG---RVTVRVLEK--AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ 1005
NL+GNA+ +T G ++ + V+++ + ++D G G+ D A++F+R R A + Q
Sbjct: 336 NLLGNAIAHTPAGGKIQLALSVVDRWGVLTVRDNGCGIPTADQARIFERFVRLDSARNRQ 395
Query: 1006 --GGGIGLSIVSRLCDLYGWKVSV 1071
G G+GL+IV + + +V V
Sbjct: 396 QGGAGLGLAIVQAIVRAHRGQVQV 419
>gi|72574|pir||VZEBPT virulence membrane protein phoQ - Salmonella
typhimurium
Length = 487
Score = 56.6 bits (134), Expect = 4e-07
Identities = 61/267 (22%), Positives = 117/267 (42%), Gaps = 13/267 (4%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRT---YRGQTTNPKPLAPHFPDDEVG 435
L ++L+ L + WWS ++P+ LA+ +R + + NP+ E+
Sbjct: 199 LAANLLLVIPLLWIAAWWS----LRPIEALAREVRELEDHHREMLNPETTR------ELT 248
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT-KPEMDPKXXXXX 612
L R L+ E + R D++H L+T LAV++ L K +
Sbjct: 249 SLVRNLNQLLKSERERYNKYRTTLTDLTHSLKTALAVLQSTLRSLRNEKMSVSKAEPVML 308
Query: 613 XXXXXAEQQC------SDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIEL 774
QQ + + G+ +LLSR VA + + L+ + K + +
Sbjct: 309 EQISRISQQIGYYLHRASMRGSGVLLSRE-----LHPVAPLLDNLISALNKVYQRKGVNI 363
Query: 775 ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVLEKAVEI--QDTGPGLSE 945
++ +++ ++ +GN++ NA KY LE ++ R + + I +D GPG+
Sbjct: 364 SMDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDDHLHIFVEDDGPGIPH 423
Query: 946 QDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
+ +F RG R G G+GL++ + + Y ++
Sbjct: 424 SKRSLVFDRGQRADTL--RPGQGVGLAVAREITEQYAGQI 461
>gi|3025461 (U58131) PhoR [Clostridium acetobutylicum]
Length = 473
Score = 56.2 bits (133), Expect = 5e-07
Identities = 74/305 (24%), Positives = 148/305 (48%), Gaps = 23/305 (7%)
Frame = +1
Query: 157 LFAYYKLAVRKADDAWFFLAY--DMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASK 330
LF KL K D++++ +Y D+++ + L L + + +F + L+I SK
Sbjct: 141 LFIVSKL---KHDNSYYKFSYIKDVSKIYDNRKYLLNVL-LKLNIFIIIILIIVMLILSK 196
Query: 331 -VMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELAR-------ALDDYSSRLTEVV 486
++KP++ + K + N + +DE+G+L++ ++D L
Sbjct: 197 FIVKPINVMIKSTQKIAEGNFNERVSGVR--NDEIGQLSKNFNYMADVIEDKIKELKTSS 254
Query: 487 QRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE----QQCSDLI 654
+ + F D++HE+RTPL I G + L T + D K E Q+ S +
Sbjct: 255 EDKQRFIDDLTHEIRTPLTSIIGYADFLRT-AKYDEKTLFSSLNYIYDEGKRLQKLSSKL 313
Query: 655 GALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIEL-ILEDKHDLTVNAPESALSV 831
L +L + + ++ + ++ + +L K I+L I DK ++ +++
Sbjct: 314 MQLTILRKEKFEMREESIETLVFRVKRAMLHKLKDKNIKLKISADKFTHLMDI--ELITI 371
Query: 832 ALGNLIGNAVKYTLEGRVTVRVLEKA------VEIQDTGPGLSEQDAAKLFQRGYR--GT 987
+ NLI NA+K + G K+ +E++DTG G+ ++D K+ + Y +
Sbjct: 372 LVTNLIDNAIKASKSGDEICFNAYKSSASNLILEVRDTGFGIPKEDVQKVNEPFYMVDKS 431
Query: 988 HAGHSQGGGIGLSIVSRLCDLYGWKVSV 1071
+ G GIGL++ + + L+ K+ +
Sbjct: 432 RERANNGAGIGLALCNEIAVLHKGKLYI 459
>gi|5830539|emb|CAB54579.1| (AJ006397) histidine kinase [Streptococcus
pneumoniae]
Length = 350
Score = 55.8 bits (132), Expect = 6e-07
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Frame = +1
Query: 508 ADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNER 687
A +SH+++TP+ I+ E +L + + ++ + L+ L L+ N
Sbjct: 125 AQLSHDIKTPITSIQATVEGILDGIIKESEQAHYLATIGRQTERLNKLVEELNFLTLNTA 184
Query: 688 GHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNA-PESA--------LSVALG 840
+ +K LD + + LI +++ D+ + PESA LS L
Sbjct: 185 RNQVETTSK-DSIFLDKLLIECMSEFQFLIEQERRDVHLQVIPESARIEGDYAKLSRILV 243
Query: 841 NLIGNAVKYTLEGR--VTVRVLEK---AVEIQDTGPGLSEQDAAKLFQRGYR-GTHAGHS 1002
NL+ NA KY+ G V LEK ++ + D G G++ +D +F+R YR T
Sbjct: 244 NLVDNAFKYSAPGTKLEVVAKLEKDQLSISVTDEGQGIAPEDLENIFKRLYRVETSRNMK 303
Query: 1003 QGG-GIGLSIVSRLCDLYGWKVSVQPGDSYGVIAT 1104
GG G+GL+I L G +++V YG+ +T
Sbjct: 304 TGGHGLGLAIARELAHQLGGEITV--SSQYGLGST 336
>gi|5353564|gb|AAD42181.1|AF130997_2 (AF130997) protein kinase
[Enterococcus faecium]
Length = 381
Score = 55.8 bits (132), Expect = 6e-07
Identities = 61/287 (21%), Positives = 129/287 (44%), Gaps = 20/287 (6%)
Frame = +1
Query: 208 FLAYDMTEAIRGERQLKRA--LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRG 381
F+ +D EA+ + +A +++ ++ G+ +I + K ++ + + T
Sbjct: 58 FIYHDRDEAVAVYLRTFKASEIWLFLIAVMGVFFMIFRRYLDSISKYFKEINRGIDTLVN 117
Query: 382 QTTNPKPLAPHFPDDE--VGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRG 555
+ N L P E + + L + QR + ++H+L+TPL + G
Sbjct: 118 EDANDIGLPPELASTERKINSIRHTLTKRKTDAELAEQRKNDLVMYLAHDLKTPLPSVIG 177
Query: 556 ATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLSRNERG-----HGSSNVAKV 717
LL + ++ + + ++ +LI ++R + N+ +
Sbjct: 178 YLNLLRDENQISEELREKYLSISLDKAERLEELINEFFEITRFNLSNITLVYSKINLTMM 237
Query: 718 AEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG---RVT 888
EQL + L GK ++ + + D+ ++ + L N++ NAV Y E RV
Sbjct: 238 LEQLGYEFKPMLAGKNLKCEFDVQPDMMLSCDANKLQRVFDNVLRNAVSYCYENTTIRVK 297
Query: 889 VR-----VLEKAVEIQDTGPGLSEQDAAKLFQRGYR--GTHAGHSQGGGIGLSIVSRLCD 1047
R VL K + DT PG + ++F++ YR + + + G G+GL+I + +
Sbjct: 298 ARQTEDHVLIKIINEGDTIPG---ERLERIFEQFYRLDVSRSSSTGGAGLGLAIAKEIVE 354
Query: 1048 LYGWKVS 1068
L+ +++
Sbjct: 355 LHHGQIT 361
>gi|226292|prf||1505375A vir gene [Bordetella pertussis]
Length = 327
Score = 55.8 bits (132), Expect = 6e-07
Identities = 34/91 (37%), Positives = 53/91 (57%), Gaps = 11/91 (12%)
Frame = +1
Query: 835 LGNLIGNAVKYTLEGRVTVRVLEK--------AVEIQDTGPGLSEQDAAKLFQRGYR--- 981
L NL+GNA+K+T EG+V + V + + DTG G+SE D +LF+ +
Sbjct: 15 LSNLVGNAIKFTTEGQVVLAVTARPDGDAAHVQFSVSDTGCGISEADQRQLFKPFSQVGG 74
Query: 982 GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
AG + G G+GLSI RL +L G + ++ G ++
Sbjct: 75 SAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPGVGTTVSV 116
>gi|2648416 (AE000958) signal-transducing histidine kinase
[Archaeoglobus fulgidus]
Length = 608
Score = 55.8 bits (132), Expect = 6e-07
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Frame = +1
Query: 472 LTEVVQRDRE----FNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQ 639
LT+ ++R E N + H++ L VIR A EL K +
Sbjct: 397 LTDELRRKSEHLSLLNKMLRHDILNDLTVIRAAIEL---------KDEKLLETALSKIDR 447
Query: 640 CSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPES 819
S +I + L N+ +V ++ + R I+L LED +TV A E+
Sbjct: 448 ISRMIYEVKNLEMAGDVRKEINLTEVVREIAATFREMA---EIDLDLED---VTVLANEN 501
Query: 820 ALSVALGNLIGNAVKYTLEGRVTVRVLEKA------VEIQDTGPGLSEQDAAKLFQRGYR 981
+V NLI NA+K++ V + V A + ++D G G+ ++ K+F+ G+
Sbjct: 502 VRTVVF-NLINNAIKHSGRDDVKISVETYAENGWGVLVVRDNGKGIPDELKEKIFEEGFS 560
Query: 982 GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRFFK 1119
AG+ G G+GL IV ++ +LYG + V+ + G + ++ K
Sbjct: 561 ---AGY--GTGLGLFIVKKMVELYGGSIEVRDNEPSGAMFVVKLPK 601
>gi|2739133 (AF029787) developmental histidine kinase sensor
[Myxococcus xanthus]
Length = 497
Score = 55.4 bits (131), Expect = 8e-07
Identities = 73/280 (26%), Positives = 122/280 (43%), Gaps = 15/280 (5%)
Frame = +1
Query: 247 RQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDL-AKLLRTYRGQTTNPKPLAPHFPD 423
++L R I V +I +A + +P+ L A LR RG T P P P
Sbjct: 193 QRLSRTYAIMGAVALSALAVIALVTARGLARPLRRLMASALRIGRGDLTTPVPPEPTL-- 250
Query: 424 DEVGELARALDDYSSRLTEVVQRDREFN---ADVSHELRTPLAVIRGATELLLTKPEMDP 594
E+G LAR L+D L RDR+ A V+HE+R P+ I + +L K ++
Sbjct: 251 -EIGVLARELEDMRGALES---RDRQLKMMLAGVAHEVRNPIGGIALFSGIL--KEDLQA 304
Query: 595 KXXXXXXXXXXAEQQ----CSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGK 762
Q+ ++ L +R + + A + A
Sbjct: 305 GAHADAGAHVERIQREVAYLQRIVEDFLAFAREQPLARAPVEAPTLLSVACELMAAEASA 364
Query: 763 RIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVLEK----AVEIQDT 927
R ++ D + A S L+ AL NL+ NAV+ + G RV V K ++++DT
Sbjct: 365 RDVVVDIDASPAVLEADGSLLTAALVNLVKNAVQASPPGGRVQVSGASKDGHYTIQVRDT 424
Query: 928 GPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYG--WKVSVQPGDS 1086
GPG+ ++F+ + +G G+GL + ++ +G ++ PGD+
Sbjct: 425 GPGVPGTARERIFEPFF----TTREKGTGLGLPLAHKIALAHGGALRLDSAPGDT 475
>gi|2649708 (AE001042) signal-transducing histidine kinase
[Archaeoglobus fulgidus]
Length = 334
Score = 55.4 bits (131), Expect = 8e-07
Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Frame = +1
Query: 793 DLTVNAPESALSVALGNLIGNAVKYTLEGRV-TVRVLEK------AVEIQDTGPGLSEQD 951
D V A + S+A NL+ NAVK+ GR VRV + V ++D G G+S+++
Sbjct: 225 DAAVMADDGLYSIA-DNLLNNAVKH---GRCKNVRVATEWEKDKVVVRVEDDGIGISDEN 280
Query: 952 AAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
+++F G+ H+G +G G+GL IV+ L + YG V V+ + G + L+F
Sbjct: 281 KSRIFNEGF---HSG--EGQGLGLFIVASLMERYGGNVEVKDNEPTGTVFVLKF 329
>gi|6460234|gb|AAF11961.1|AE002072_3 (AE002072) sensor histidine
kinase [Deinococcus radiodurans]
Length = 474
Score = 55.0 bits (130), Expect = 1e-06
Identities = 75/283 (26%), Positives = 127/283 (44%), Gaps = 26/283 (9%)
Frame = +1
Query: 208 FLAYDMTEAIRGERQLKRALYISVLVFSGLSLLIGWWSASKVMK---PVSDLAKLLRTYR 378
++A T+ + + RAL +S+LV L LL+GW +++ +DLA + R
Sbjct: 156 WVALPETDLVVAQTSATRALLLSLLVAPLLLLLLGWLVGQRMLAGLGEAADLADRIDPSR 215
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGA 558
T P P +DEV L A++ R+ R+++ + HEL PL V++ A
Sbjct: 216 SLATLPLPER----EDEVHRLLAAINRLLVRIEAGQLREKQLLGQIVHELGAPLTVLK-A 270
Query: 559 TELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDS 738
T + DP E Q + L+ + + + L+
Sbjct: 271 TLSRAGERTNDP------------EVQKAALV--------------ADELTFTTQDLMQL 304
Query: 739 HRAQLGGKRI-----ELILEDKHDLTVN-------------APESALSVALGNLIGNAVK 864
R QL K + + L D+ D V L+ AL NL+ NA +
Sbjct: 305 ARGQLEMKLVWHYIPAVTLRDRLDRLVPGVTFSGDWSGGILCDPDRLTQALRNLLANARR 364
Query: 865 YT-LEGRVTVRVLEK----AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSI 1029
+ L+G V+ + E ++D+GPGL + ++F G AG S G+GLS+
Sbjct: 365 HAGLDGSVSCTLAETPEWLTFTVRDSGPGLPPELGERIFDPFVSG--AGSS---GLGLSV 419
Query: 1030 VSRLCDLYG 1056
++ ++G
Sbjct: 420 SRQIAVMHG 428
>gi|6460469|gb|AAF12175.1|AE001862_1 (AE001862) sensor histidine
kinase [Deinococcus radiodurans]
Length = 532
Score = 54.3 bits (128), Expect = 2e-06
Identities = 64/229 (27%), Positives = 105/229 (44%), Gaps = 21/229 (9%)
Frame = +1
Query: 430 VGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTK--PEMDPKXX 603
+ E AR+L+ ++ L + F SH+L+ PL I TEL+ + ++D +
Sbjct: 278 LAESARSLERTNASLQRSNRELERFAYVASHDLQEPLRTIGSYTELIARRYGDKLDARGE 337
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERG---HGSSNVAKVAEQL---LDSHRAQLGGKR 765
A + LI LL+ SR R G + A++AEQ+ L+ ++GG+
Sbjct: 338 QYIKFTISAAHRLKTLIQDLLVFSRVHRTGRVFGPVDTAELAEQVRAELEVKLREVGGE- 396
Query: 766 IELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGR---VTVRVLEKAVE------- 915
L TV L NL+GNA+K+ R V V A +
Sbjct: 397 ----LHIGELPTVQGNRELLHHIFLNLLGNALKFRHPDRPPRVDVWAGRVAGQDEAGNGW 452
Query: 916 ---IQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDS 1086
++D G G+ + K+F+ R G +G GIGL++ + +G +V ++
Sbjct: 453 QFAVRDNGIGIEPEYHQKIFEVFQRLHGVGEYEGSGIGLAVTRNAAEQHGGRVWLESEPG 512
Query: 1087 YGVIATLRFF 1116
G T FF
Sbjct: 513 QG--TTFYFF 520
>gi|2649119 (AE001003) signal-transducing histidine kinase
[Archaeoglobus fulgidus]
Length = 438
Score = 53.9 bits (127), Expect = 2e-06
Identities = 57/248 (22%), Positives = 107/248 (42%), Gaps = 4/248 (1%)
Frame = +1
Query: 370 TYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVI 549
TY+G+ + E+ E R +DY L ++++ H++ L ++
Sbjct: 221 TYKGRPAVAATVVDTTSIHELNERLRMREDYLRLLNKILR----------HDIANALVLV 270
Query: 550 RGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQL 729
R E + E+ K ++ + L AL L + + ++ ++
Sbjct: 271 RAVLEE--REDELSNKALARVDHIVKLIREVAGLESALEELR-------PTKMDELVREV 321
Query: 730 LDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA 909
++ + G+ + TV A ES ++A NLI NA++++ G V V V +
Sbjct: 322 AENFGVEFEGEEV----------TVMANESLRTIAF-NLIQNAIQHS-GGEVRVEVKKDG 369
Query: 910 ----VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQP 1077
+ + DTG G+ + ++F+ G+ + G GIGL IV +L D+ G +SV
Sbjct: 370 RWGVLRVADTGKGIPDHIKQRIFEEGFT------TGGTGIGLFIVKKLTDILGGAISVYD 423
Query: 1078 GDSYGVIATLRF 1113
+ G I +RF
Sbjct: 424 NEPSGTIFEVRF 435
>gi|5830521|emb|CAB54567.1| (AJ006391) histidine kinase [Streptococcus
pneumoniae]
Length = 324
Score = 53.5 bits (126), Expect = 3e-06
Identities = 29/108 (26%), Positives = 59/108 (53%), Gaps = 3/108 (2%)
Frame = +1
Query: 790 HDLT--VNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKAVEIQDTGPGLSEQDAAKL 963
HDL + + L V + +I N++KYT EG + + + ++ + I+DTG G+ D ++
Sbjct: 206 HDLDKEIVTDKKWLLVVIEQIISNSLKYTKEGGLEIYMDDQELCIKDTGIGIKNSDVLRV 265
Query: 964 FQRGYRGTHAG-HSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
F+RG+ G + Q G+GL + ++ + G ++ ++ G ++F
Sbjct: 266 FERGFSGYNGRLTQQSSGLGLYLSKKISEELGHQIRIESEVGKGTTVRIQF 316
>gi|130129|sp|P14147|PHOQ_SALTY VIRULENCE SENSOR PROTEIN PHOQ
>gi|154267 (M24424) membrane protein phoQ [Salmonella
typhimurium]
Length = 451
Score = 53.1 bits (125), Expect = 4e-06
Identities = 57/239 (23%), Positives = 106/239 (43%), Gaps = 13/239 (5%)
Frame = +1
Query: 265 LYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRT---YRGQTTNPKPLAPHFPDDEVG 435
L ++L+ L + WWS ++P+ LA+ +R + + NP+ E+
Sbjct: 181 LAANLLLVIPLLWIAAWWS----LRPIEALAREVRELEDHHREMLNPETTR------ELT 230
Query: 436 ELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLT-KPEMDPKXXXXX 612
L R L+ E + R D++H L+TPLAV++ L K +
Sbjct: 231 SLVRNLNQLLKSERERYNKYRTTLTDLTHSLKTPLAVLQSTLRSLRNEKMSVSKAEPVML 290
Query: 613 XXXXXAEQQC------SDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIEL 774
QQ + + G+ +LLSR VA + + L+ + K + +
Sbjct: 291 EQISRISQQIGYYLHRASMRGSGVLLSRE-----LHPVAPLLDNLISALNKVYQRKGVNI 345
Query: 775 ILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE-GRVTVRVLEKAVEI--QDTGPGLSE 945
++ +++ ++ +GN++ NA KY LE ++ R + + I +D GPG+
Sbjct: 346 SMDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDDHLHIFVEDDGPGIPH 405
Query: 946 QDAAKLFQRGYR 981
+ +F RG R
Sbjct: 406 SKRSLVFDRGQR 417
>gi|1706359|sp|Q03069|DEGM_BACSP SENSOR PROTEIN DEGM
>gi|2126826|pir||I39833 degM protein - Bacillus sp
>gi|216260|dbj|BAA01532| (D10690) DegM [Bacillus sp.]
>gi|742238|prf||2009319A degM gene [Bacillus subtilis]
Length = 373
Score = 52.7 bits (124), Expect = 6e-06
Identities = 50/212 (23%), Positives = 102/212 (47%), Gaps = 10/212 (4%)
Frame = +1
Query: 472 LTEVVQRDREFN-----ADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ 636
+ E+V +++F A ++HE+R PL V++G +LL + K +E
Sbjct: 152 VAELVATEKDFTKGELAASIAHEVRNPLTVVKGFVQLL-----SEDKQHAEYHKLILSEL 206
Query: 637 QCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPE 816
++ I L + + + + ++ + A +++ + I+L + VN E
Sbjct: 207 DRAESIIYEFLNTTRPQTNATFHLNETAREVVALLTPYAQERSIQLTIGTCEQAIVNGNE 266
Query: 817 SALSVALGNLIGNAVKYTLEG-RVTV---RVLEKA-VEIQDTGPGLSEQDAAKLFQRGYR 981
+ + AL N + N ++ + EG VT+ R+ ++A +EI D G G+S Q +L +
Sbjct: 267 NKVKQALMNFVKNGIEASNEGDTVTIQLDRLKDRAQIEINDNGVGMSRQQLKQLGTAYFT 326
Query: 982 GTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
+G+ G + + IV + + +K +PG V+ +L
Sbjct: 327 TKESGNGIGTMVSIRIVEMMNGMVTFK--SKPGKGTKVVLSL 366
>gi|3122321|sp|P96372|KDPD_MYCTU SENSOR PROTEIN KDPD
>gi|1870000|emb|CAB06851| (Z92539) kdpD [Mycobacterium
tuberculosis]
Length = 860
Score = 52.3 bits (123), Expect = 7e-06
Identities = 60/204 (29%), Positives = 87/204 (42%), Gaps = 19/204 (9%)
Frame = +1
Query: 496 REFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE--QQCSDLIGALLL 669
R + VSH+LRTPLA + A L T+ E Q + L+ LL
Sbjct: 634 RSLLSAVSHDLRTPLAAAKVAVSSLRTEDVAFSPEDTAELLATIEESIDQLTALVANLLD 693
Query: 670 LSRNERGHGSSNVAK------VAEQLLDSHRAQLGGKR--IELILEDKHDLTVNAPESAL 825
SR G + + V L+ + G R I+ + D D A L
Sbjct: 694 SSRLAAGVIRPQLRRAYLEEAVQRALVSIGKGATGFYRSGIDRVKVDVGDAVAMADAGLL 753
Query: 826 SVALGNLIGNAVKYTLE-------GRVTVRVLEKAVEIQDTGPGLSEQDAAKLFQRGYRG 984
L NLI NA++Y + GRV RVL + + D GPG+ +LF R
Sbjct: 754 ERVLANLIDNALRYAPDCVVRVNAGRVRERVL---INVIDEGPGVPRGTEEQLFAPFQRP 810
Query: 985 THAGHSQGGGIGLSIVSRLCDLYGWKVSV--QPGDSYGVIATL 1107
++ G G+G+S+ + G +S PG V+ L
Sbjct: 811 GDHDNTTGVGLGMSVARGFVEAMGGTISATDTPGGGLTVVIDL 853
>gi|1652028|dbj|BAA16953| (D90902) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 380
Score = 52.3 bits (123), Expect = 7e-06
Identities = 45/198 (22%), Positives = 90/198 (44%), Gaps = 12/198 (6%)
Frame = +1
Query: 514 VSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERG- 690
+ H+LR PL + ++L P A QQ L+ +L++S+ E G
Sbjct: 144 IVHDLRNPLTNLILGIQVLQRSHSDAPLPPERLDRLLQAGQQIQHLVDDMLVVSKQEHGK 203
Query: 691 ----HGSSNVAKVAEQLLDSHRAQLGGKRIELILE-DKHDLTVNAPESALSVALGNLIGN 855
+ ++ + +LD + A K++ L+ + L + NL+ N
Sbjct: 204 IRLDYQEVDLLALMGTVLDDYEAIASQKQLTLVRTWENKPLVAKIDPPIFQRIISNLLSN 263
Query: 856 AVKYTLEG-RVTVRVLEK-----AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGI 1017
A+K++ G +V V ++ + + D GPG+ ++ K+F+ GT + G+
Sbjct: 264 AIKFSPTGAKVEVAIITEDKDKVTICFIDQGPGIKDELKLKIFEPYEVGTIMPNIAQIGL 323
Query: 1018 GLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
GL+ + + +G ++VQ G + +L
Sbjct: 324 GLAFCKMMSEAHGGAITVQDNQPRGAMFSL 353
>gi|732226|sp|Q06067|ATOS_ECOLI SENSOR PROTEIN ATOS >gi|290419
(L13078) ORF-1 [Escherichia coli]
>gi|1736874|dbj|BAA16015| (D90851) Sensor protein AtoS
(EC 2.7.3.-). [Escherichia coli] >gi|1788549 (AE000311)
sensor protein AtoS for response regulator AtoC
[Escherichia coli]
Length = 608
Score = 52.3 bits (123), Expect = 7e-06
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLS- 675
E A V+HE+R PL IRG + +L + DP + +I LL S
Sbjct: 391 ELMAGVAHEVRNPLTAIRGYVQ-ILRQQTSDPIHQEYLSVVLKEIDSINKVIQQLLEFSR 449
Query: 676 -RNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLT-VNAPESALSVALGNLI 849
R+ + S A V E L+ A + R++ I E ++L+ +NA L L N++
Sbjct: 450 PRHSQWQQVSLNALVEETLVLVQTAGVQA-RVDFISELDNELSPINADRELLKQVLLNIL 508
Query: 850 GNAVK-YTLEGRVTVRV-----LEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGG 1011
NAV+ + G++ ++ ++A+ I+D G G+ K+F + + G
Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF----TTKASGT 564
Query: 1012 GIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
G+GL++ R+ + + + V YG TL
Sbjct: 565 GLGLALSQRIINAHQGDIRVASLPGYGATFTL 596
>gi|585964|sp|Q06904|SASA_SYNP7 ADAPTIVE-RESPONSE SENSORY-KINASE SASA
>gi|484478|pir||JN0793 adaptive-response sensory-kinase
(EC 2.7.-.-) - Synechococcus sp. (PCC 7942)
>gi|217142|dbj|BAA03145| (D14056) SarS [Synechococcus
sp.]
Length = 387
Score = 52.3 bits (123), Expect = 7e-06
Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 24/218 (11%)
Frame = +1
Query: 418 PDDEVGELARALDDYSSRLTEVVQRDR---EFNADVSHELRTPLAV---------IRGAT 561
P+ + A AL + ++ +R + + A V+H+LR PL IR +
Sbjct: 124 PETPALQQADALFQLQQQYADLSERTKFLEQVIALVAHDLRNPLTAALLAVDTIQIRSQS 183
Query: 562 ELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVA-----EQ 726
+ T EM ++ +I +L +R+ N +V +Q
Sbjct: 184 FSVATAKEMQGLCSLFDQARSQL-REIERMIAEILEATRHSGESLRINPREVVFEPLLQQ 242
Query: 727 LLDSHRAQLGGKRIELILEDKHDL-TVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVL 900
+L+ + K+ +LI + DL T+ A L L NL+ NA+KYT G +T+ L
Sbjct: 243 VLEQLHERWRSKQQQLITDVPGDLPTLYADPDRLRQVLVNLLDNAIKYTPPGGTITIAAL 302
Query: 901 EKA-----VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
+ + I DTG G+ + +F+ R + +G GIGLS+ R+ + ++
Sbjct: 303 HRTSQKVQISISDTGSGIPRDQLSVIFKNLVRLSRDSSQEGYGIGLSVCQRIVQAHFGRI 362
Query: 1066 SV 1071
V
Sbjct: 363 WV 364
>gi|1708883|sp|P54301|LUXN_VIBHA SENSOR PROTEIN LUXN
>gi|487038|pir||S37350 luxN protein - Vibrio harveyi
>gi|295434 (L13940) Lux N [Vibrio harveyi]
Length = 849
Score = 51.5 bits (121), Expect = 1e-05
Identities = 71/264 (26%), Positives = 122/264 (45%), Gaps = 31/264 (11%)
Frame = +1
Query: 274 SVLVFSGLSLLIGWW-SASKVMKPVSDLAKLLRTY-------RGQTTNPKPLAPHFPDDE 429
SVLVF LS + + SA + MK + D T +G++ ++PH +++
Sbjct: 373 SVLVFDELSEELEYKVSAKRSMKALYDKMSSNNTALVMPLFGQGKSVTHLLISPHKSNNQ 432
Query: 430 V--GELARALDDYSSRLTEVVQRDREFNAD------VSHELRTPLAVIRGATELLLTKPE 585
+ E A+ +R+ ++ DR ++HE+R PLA ++ E L E
Sbjct: 433 MFSNEEISAVQTLLTRVQSTIEADRRIRQSRALANSIAHEMRNPLAQVQLQFEALKQHIE 492
Query: 586 MDP---KXXXXXXXXXXAEQQCSDLIGALLL-LSRNERGH---GSSNVAKVAEQLLDSHR 744
+ A Q+ LI +L +S + H +++ K +Q + SH
Sbjct: 493 NHAPVEQITLDIENGQAAIQRGRQLIDIILREVSDSSPEHEPIAMTSIHKAVDQAV-SHY 551
Query: 745 AQLGGKRIELILEDKH-DLTVNAPESALSVALGNLIGNAVKY-------TLEGRVTVRVL 900
K IE I +H D E+ + + NLI NA+ Y +E
Sbjct: 552 GFENEKIIERIRLPQHTDFVAKLNETLFNFVIFNLIRNAIYYFDSYPDSQIEISTKTGPY 611
Query: 901 EKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
E + +DTGPG+ E + K+F + +G G G+GL R+ +G ++
Sbjct: 612 ENTLIFRDTGPGIDETISHKIFDDFFSYQKSG---GSGLGLGYCQRVMRSFGGRI 663
>gi|6578850|gb|AAF18102.1|AF204400_2 (AF204400) FrgB [Myxococcus
xanthus]
Length = 510
Score = 51.5 bits (121), Expect = 1e-05
Identities = 55/216 (25%), Positives = 100/216 (45%), Gaps = 13/216 (6%)
Frame = +1
Query: 463 SSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQC 642
S RL + R F+A ++H+L+ P+A ++GA + L + +Q
Sbjct: 275 SERLERLATLGR-FSAQMAHDLKNPIAAMKGAAQYLKEEHARGRSWDGQGEFLDLLLEQV 333
Query: 643 SDL---IGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAP 813
L + L+R E ++ ++ E +L GK + + +L P
Sbjct: 334 ERLDRVVDTYQRLARVEPLPKPVDLRRLVEGVLSLQVFASPGKVVII-----RELAAGLP 388
Query: 814 ESA-----LSVALGNLIGNAVKYTLEG-RVTVRVL----EKAVEIQDTGPGLSEQDAAKL 963
A L+ AL NL+ NA + G +TVR L + A+E++DTG G+ A+
Sbjct: 389 PCAGDQDLLANALENLVRNACEAMPGGGTLTVRALRDGADVAMEVEDTGEGMD----ART 444
Query: 964 FQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
+R + + G G+GL+ V R+ + +G +V + + G + +R
Sbjct: 445 RERAFDDFFTTKASGSGLGLAFVRRVVEAHGGEVLLTSREGRGTVVRMR 493
>gi|6689207|emb|CAB65401.1| (AJ012052) VicK protein [Staphylococcus
aureus]
Length = 415
Score = 51.2 bits (120), Expect = 2e-05
Identities = 58/210 (27%), Positives = 95/210 (44%), Gaps = 17/210 (8%)
Frame = +1
Query: 478 EVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLI 654
+V + REF A+VSHELRTPL + E L D + E ++ L+
Sbjct: 178 QVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLV 237
Query: 655 GALLLLSRNERGHGSSNVAKVAEQLLDS---HRAQLGGKRIELILE-DKHDLTVNAPESA 822
LL LS+ + N + + + +R ++ K I + K +
Sbjct: 238 NDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDK 297
Query: 823 LSVALGNLIGNAVKYTL-EGRVTVRVLEK------AVEIQDTGPGLSEQDAAKLFQRGYR 981
++ N+I NA+KY+ + RV V + + I+D G G+ K+F R YR
Sbjct: 298 MTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYR 357
Query: 982 GTHAGHSQ--GGGIGLSIVSRLCDLYG---WKVSVQPGDSYGVIATL 1107
A + G G+GL+I + + + W SV+ G + TL
Sbjct: 358 VDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVE-GQGTSIFITL 403
Score = 33.2 bits (74), Expect = 4.0
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 298 SLLIGWWSASKVMKPVSDLA-KLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSRL 474
++++G++ A + KP++D+ + + RG T + + +DE+GELA A ++ S R+
Sbjct: 2 TVILGFFIARTITKPITDMRNQTVEMSRGNYTQRVKI---YGNDEIGELALAFNNLSKRV 58
Query: 475 TE 480
E
Sbjct: 59 QE 60
>gi|5566398|gb|AAD45389.1|AF166333_1 (AF166333) histidine protein
kinase AsgD [Myxococcus xanthus]
Length = 773
Score = 51.2 bits (120), Expect = 2e-05
Identities = 57/214 (26%), Positives = 103/214 (47%), Gaps = 17/214 (7%)
Frame = +1
Query: 469 RLTEVVQRDREFNAD----VSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQ 636
R E ++R EF VSH+LR PLA I + LL K + A +
Sbjct: 539 RSQEELRRRAEFEQQLVGIVSHDLRNPLAAISMSAGLLEKKGALTEPQKRMVWRIGQATE 598
Query: 637 QCSDLIGALLLLSRNERGHG------SSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDL 798
+ + +I LL ++ G G ++++ +V Q++D G+R+E +E + ++
Sbjct: 599 RAARMIRDLLDFTKARLGGGIALHRQTTDLREVVHQVVDELLVANPGRRVE--VEVQGEV 656
Query: 799 TVNAPESALSVALGNLIGNAVKYT---LEGRVTVRVLEKA--VEIQDTGPGLSEQDAAKL 963
++ L NL+GNA+ Y+ RV R+ +A + + + G + + +L
Sbjct: 657 RGEWDSDRIAQVLTNLLGNALAYSPADAPVRVDTRLEGEAALLSVFNGGAPIPRELLPRL 716
Query: 964 FQRGYRGT--HAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
F+ RG ++ G+GL IV + +G V V + +G T+R
Sbjct: 717 FEPLTRGALKEGQSTRSIGLGLYIVQDIVRGHGGGVEVVSSEQHGTTFTVR 767
>gi|5114231|gb|AAD40238.1|AF136709_2 (AF136709) histidine kinase YycG
[Staphylococcus aureus]
Length = 608
Score = 51.2 bits (120), Expect = 2e-05
Identities = 58/210 (27%), Positives = 95/210 (44%), Gaps = 17/210 (8%)
Frame = +1
Query: 478 EVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLI 654
+V + REF A+VSHELRTPL + E L D + E ++ L+
Sbjct: 371 QVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLV 430
Query: 655 GALLLLSRNERGHGSSNVAKVAEQLLDS---HRAQLGGKRIELILE-DKHDLTVNAPESA 822
LL LS+ + N + + + +R ++ K I + K +
Sbjct: 431 NDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDK 490
Query: 823 LSVALGNLIGNAVKYTL-EGRVTVRVLEK------AVEIQDTGPGLSEQDAAKLFQRGYR 981
++ N+I NA+KY+ + RV V + + I+D G G+ K+F R YR
Sbjct: 491 MTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYR 550
Query: 982 GTHAGHSQ--GGGIGLSIVSRLCDLYG---WKVSVQPGDSYGVIATL 1107
A + G G+GL+I + + + W SV+ G + TL
Sbjct: 551 VDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVE-GQGTSIFITL 596
Score = 34.0 bits (76), Expect = 2.3
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 295 LSLLIGWWSASKVMKPVSDLA-KLLRTYRGQTTNPKPLAPHFPDDEVGELARALDDYSSR 471
+++++G++ A + KP++D+ + + RG T + + +DE+GELA A ++ S R
Sbjct: 194 ITVILGFFIARTITKPITDMRNQTVEMSRGNYTQRVKI---YGNDEIGELALAFNNLSKR 250
Query: 472 LTE 480
+ E
Sbjct: 251 VQE 253
>gi|5830533|emb|CAB54575.1| (AJ006395) histidine kinase [Streptococcus
pneumoniae]
Length = 443
Score = 51.2 bits (120), Expect = 2e-05
Identities = 67/266 (25%), Positives = 112/266 (41%), Gaps = 21/266 (7%)
Frame = +1
Query: 280 LVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARALDD 459
LV S + ++ +++ P+ ++++ T + Q + DEVGE+ + ++
Sbjct: 150 LVTIAFSFVFSYFYTKRLLNPLFYISEV--TSKMQDLDDNIRFDESRKDEVGEVGKQING 207
Query: 460 YSSRLTEVVQRDREFNADV--------------SHELRTPLAVIRGATELLLTKPEMDPK 597
L +V+ N + SHEL+TPLA +R E +
Sbjct: 208 MYEHLLKVIYELESRNEQIVKLQNQKVSFVRGASHELKTPLASLRIILENMQHNIGDYKD 267
Query: 598 XXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLD-----SHRAQLGGK 762
Q S L+ +L S+ + V L+D A G
Sbjct: 268 HPKYIAKSINKIDQMSHLLEEVLESSKFQEWTECRETLTVKPVLVDILSRYQELAHSIGV 327
Query: 763 RIELILEDKHDLTVNAPESALSVALGNLIGNAVKYT-LEGRVTVRVLEKAVEIQDTGPGL 939
IE L D + ++ AL L NLI NA+KY+ GRV + + + I++T L
Sbjct: 328 TIENQLTDATRVVMSL--RALDKVLTNLISNAIKYSDKNGRVIISEQDGYLSIKNTCAPL 385
Query: 940 SEQDAAKLFQRGYRG-THAGHSQGGGIGLSIVSRLCDLYGWKVSVQP 1077
S+Q+ LF Y + G+GL IV+ + + Y S P
Sbjct: 386 SDQELEHLFDIFYHSQIVTDKDESSGLGLYIVNNILESYQMDYSFLP 432
>gi|2649045 (AE000997) signal-transducing histidine kinase
[Archaeoglobus fulgidus]
Length = 338
Score = 50.8 bits (119), Expect = 2e-05
Identities = 35/107 (32%), Positives = 55/107 (50%), Gaps = 4/107 (3%)
Frame = +1
Query: 787 KHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA----VEIQDTGPGLSEQDA 954
K D + A + SV NLIGNAVK+ V+V V ++ V +D G G+ E+
Sbjct: 218 KGDAVITANDGIYSV-FENLIGNAVKHGGATEVSVEVRDEGDHCEVIFRDNGRGIPEEIR 276
Query: 955 AKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATL 1107
K+F++G+ +G G+GL IV +L + YG + + G + L
Sbjct: 277 EKVFEKGFTT-----GRGSGLGLYIVKKLIESYGGDIELLEGKGAAFVIRL 322
>gi|2222757|emb|CAB09955| (Z97182) hypothetical protein Rv0601c
[Mycobacterium tuberculosis]
Length = 156
Score = 50.8 bits (119), Expect = 2e-05
Identities = 35/113 (30%), Positives = 56/113 (48%)
Frame = +1
Query: 247 RQLKRALYISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDD 426
R+L L I +++ + + L+ + V + + L T T P P+ P DD
Sbjct: 42 RELVTILPIVLVIAAVAAYLLSRAALRPVDRIRAAAQTLTTTPHPDTDAPLPVPP--TDD 99
Query: 427 EVGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPE 585
E+ LA L+ +RL + +++F AD SHELRTPLA++ EL P+
Sbjct: 100 EIAWLATTLNTMLTRLQRALAHEQQFVADASHELRTPLALLTTELELRCAGPD 152
>gi|508715 (L22436) pilin transcriptional activator [Pseudomonas
aeruginosa]
Length = 530
Score = 50.8 bits (119), Expect = 2e-05
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 15/223 (6%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDR----EFNADVSHELRTPLAV 546
G T P ++ + DD+ + L+D S + Q A ++HE+R PL
Sbjct: 270 GPTVQPSFISLNREDDQ--HVLIFLEDISQIAQQAQQMKLAGLGRLTAGIAHEIRNPLGA 327
Query: 547 IRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSS-NVAKVAE 723
I A +LL E+D ++ + +I +L LSR + ++ + +
Sbjct: 328 ISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIENVLQLSRRRQAEPQQLDLKEWLQ 387
Query: 724 QLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE----GRVTV 891
+ +D + +L + D+ L+ L NL+ N ++Y+ + G+V +
Sbjct: 388 RFVDEYPGRLRNDSELHLQLGAGDIQTRMDPHQLNQVLSNLVQNGLRYSAQAHGRGQVWL 447
Query: 892 RVLE------KAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCD 1047
+ +EI D GPG+ LF+ + S+G G+GL + LC+
Sbjct: 448 SLARDPESDLPVLEIIDDGPGVPADKLNNLFEPFF----TTESKGTGLGLYLSRELCE 501
>gi|628492|pir||S45584 pilS protein - Pseudomonas aeruginosa
Length = 331
Score = 50.8 bits (119), Expect = 2e-05
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 15/223 (6%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDR----EFNADVSHELRTPLAV 546
G T P ++ + DD+ + L+D S + Q A ++HE+R PL
Sbjct: 71 GPTVQPSFISLNREDDQ--HVLIFLEDISQIAQQAQQMKLAGLGRLTAGIAHEIRNPLGA 128
Query: 547 IRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSS-NVAKVAE 723
I A +LL E+D ++ + +I +L LSR + ++ + +
Sbjct: 129 ISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIENVLQLSRRRQAEPQQLDLKEWLQ 188
Query: 724 QLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE----GRVTV 891
+ +D + +L + D+ L+ L NL+ N ++Y+ + G+V +
Sbjct: 189 RFVDEYPGRLRNDSELHLQLGAGDIQTRMDPHQLNQVLSNLVQNGLRYSAQAHGRGQVWL 248
Query: 892 RVLE------KAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCD 1047
+ +EI D GPG+ LF+ + S+G G+GL + LC+
Sbjct: 249 SLARDPESDLPVLEIIDDGPGVPADKLNNLFEPFF----TTESKGTGLGLYLSRELCE 302
>gi|464393|sp|P33639|PILS_PSEAE SENSOR PROTEIN PILS
>gi|479396|pir||S33673 probable protein kinase pilS (EC
2.7.1.-) - Pseudomonas aeruginosa
>gi|581436|emb|CAA78138| (Z12154) sensor; putative PilR
kinase [Pseudomonas aeruginosa]
Length = 530
Score = 50.4 bits (118), Expect = 3e-05
Identities = 51/223 (22%), Positives = 97/223 (42%), Gaps = 15/223 (6%)
Frame = +1
Query: 379 GQTTNPKPLAPHFPDDEVGELARALDDYSSRLTEVVQRDR----EFNADVSHELRTPLAV 546
G T P ++ + DD+ + L+D S + Q A ++HE+R PL
Sbjct: 270 GPTVQPSFISLNREDDQ--HVLIFLEDISQIAQQAQQMKLAGLGRLTAGIAHEIRNPLGA 327
Query: 547 IRGATELLLTKPEMDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSS-NVAKVAE 723
I A +LL E+D ++ + +I +L LSR + ++ + +
Sbjct: 328 ISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIENVLQLSRRRQAEPQQLDLKEWLQ 387
Query: 724 QLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLE----GRVTV 891
+ +D + +L + D+ L+ L NL+ N ++Y+ + G+V +
Sbjct: 388 RFVDEYPGRLRNDSQLHLQLGAGDIQTRMDPHQLNQVLSNLVQNGLRYSAQAHGRGQVWL 447
Query: 892 RVLE------KAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCD 1047
+ +E+ D GPG+ LF+ + S+G G+GL + LC+
Sbjct: 448 SLARDPESDLPVLEVIDDGPGVPADKLNNLFEPFF----TTESKGTGLGLYLSRELCE 501
>gi|2650436 (AE001092) signal-transducing histidine kinase
[Archaeoglobus fulgidus]
Length = 481
Score = 50.4 bits (118), Expect = 3e-05
Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 11/282 (3%)
Frame = +1
Query: 265 LYISVLVFSGLSLLI---GW--WSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDE 429
LY + S ++LL GW + S + S++ L Y+ T L+ + D E
Sbjct: 198 LYFILKYISDVALLRSFRGWLDFDLSTAIFTFSNIVLLTVLYKFYRTEITLLSYYDLDAE 257
Query: 430 VGELARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATEL--LLTKPEMDPKXX 603
+ A + +++ E+ + + N + H++ L +I G E + + E+ K
Sbjct: 258 RKKYA----ELYAQVNELQEILKLINRMLRHDILNKLQIISGYVETYRMTKREELLDKVM 313
Query: 604 XXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILE 783
+ +L +L +S + N+ +VAE++ S ++ K + +
Sbjct: 314 KAVEESSSYIDKIRELEKIVLTMSEKLK---PINMREVAEEVAKSFNIEINIKGSCVAMA 370
Query: 784 DKHDLTVNAPESALSVALGNLIGNAVKYTLEGRVTVRVLE----KAVEIQDTGPGLSEQD 951
D A+ L NLI NA+K+ RV + + E + + D G G+ +
Sbjct: 371 D----------GAIYSVLENLISNAIKHGRTNRVDIILSEFEDDCEIRVVDYGVGIPLEI 420
Query: 952 AAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
++F+ ++ G + G G+GL IV R+ + YG KV V+ +G +R
Sbjct: 421 RRQIFKESFK---YGETGGTGLGLYIVKRVVERYGGKVWVEDTKPHGATFVIR 470
>gi|1170663|sp|Q08430|KINB_BACSU SPORULATION KINASE B >gi|2231219
(U63302) KinB [Bacillus subtilis]
Length = 428
Score = 49.6 bits (116), Expect = 5e-05
Identities = 46/204 (22%), Positives = 90/204 (43%), Gaps = 11/204 (5%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLS 675
E A V+HE+R PL V+RG +LL + K +E + +I L ++
Sbjct: 214 ELAASVAHEVRNPLTVVRGFVQLLFNDETLQNKSSADYKKLVLSELDRAQGIITNYLDMA 273
Query: 676 RNE----RGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGN 843
+ + S + K L+ S+ K + + E + DL + + L A+ N
Sbjct: 274 KQQLYEKEVFDLSALIKETSSLMVSY---ANYKSVTVEAETEPDLLIYGDATKLKQAVIN 330
Query: 844 LIGNAVKYTLEGRVTVRVLEK------AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ 1005
L+ N+++ G+ + + K + I D G G+++ KL + Y + +
Sbjct: 331 LMKNSIEAVPHGKGMIHISAKRNGHTIMINITDNGVGMTDHQMQKLGEPYY----SLKTN 386
Query: 1006 GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
G G+GL++ + + + +S G T++
Sbjct: 387 GTGLGLTVTFSIIEHHHGTISFNSSFQKGTTVTIK 421
>gi|1934780|emb|CAB07911| (Z93933) sporulation-specific ATP-dependent
protein kinase [Bacillus subtilis]
>gi|2635641|emb|CAB15134| (Z99120) two-component sensor
histidine kinase [Bacillus subtilis]
Length = 429
Score = 49.6 bits (116), Expect = 5e-05
Identities = 46/204 (22%), Positives = 90/204 (43%), Gaps = 11/204 (5%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLS 675
E A V+HE+R PL V+RG +LL + K +E + +I L ++
Sbjct: 215 ELAASVAHEVRNPLTVVRGFVQLLFNDETLQNKSSADYKKLVLSELDRAQGIITNYLDMA 274
Query: 676 RNE----RGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGN 843
+ + S + K L+ S+ K + + E + DL + + L A+ N
Sbjct: 275 KQQLYEKEVFDLSALIKETSSLMVSY---ANYKSVTVEAETEPDLLIYGDATKLKQAVIN 331
Query: 844 LIGNAVKYTLEGRVTVRVLEK------AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ 1005
L+ N+++ G+ + + K + I D G G+++ KL + Y + +
Sbjct: 332 LMKNSIEAVPHGKGMIHISAKRNGHTIMINITDNGVGMTDHQMQKLGEPYY----SLKTN 387
Query: 1006 GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
G G+GL++ + + + +S G T++
Sbjct: 388 GTGLGLTVTFSIIEHHHGTISFNSSFQKGTTVTIK 422
>gi|5712282|gb|AAD47419.1|AF100457_2 (AF100457) histidine kinase
[Myxococcus xanthus]
Length = 830
Score = 49.2 bits (115), Expect = 6e-05
Identities = 56/211 (26%), Positives = 100/211 (46%), Gaps = 20/211 (9%)
Frame = +1
Query: 478 EVVQRDR-----EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAEQQC 642
E+V+R+R E +A V+HE+R PL VI A L +
Sbjct: 596 EMVKRERLAALGELSAIVAHEVRNPLGVIFNAVASLRRLLVPGGDAAMLLDILGEESDRL 655
Query: 643 SDLIGALLLLSR-NERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAP-- 813
+ ++G LL +R + ++ +V + L++ R Q GG + ++ D+ P
Sbjct: 656 NRIVGDLLDYTRPRDPVLQQEDLGRVLQDSLEAARMQGGGADRSIRIQS--DVEPGLPPV 713
Query: 814 ---ESALSVALGNLIGNAVKYTLEGR-VTVRVLEKA--------VEIQDTGPGLSEQDAA 957
+ AL N+ NA++ +G V VR +A +++ D GPG+ A
Sbjct: 714 PMDRRLIRQALVNVAVNAIQSMPQGGLVQVRARREAHAGREQLRIDVVDQGPGIP----A 769
Query: 958 KLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
+L R + +QG G+GL++V R+ + + +++V G T R
Sbjct: 770 ELLHRVFEPFFTTKAQGTGLGLAVVRRILEEHRGEIAVDSIPGRGTTFTFR 820
>gi|4103329 (AF022772) sensor protein [Erwinia carotovora subsp.
carotovora]
Length = 484
Score = 48.0 bits (112), Expect = 1e-04
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 8/266 (3%)
Frame = +1
Query: 274 SVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARAL 453
++LV L L WS + V +A+L + R + P E+ L + L
Sbjct: 200 NLLVVLPLLWLGAHWSLRPIQHLVKQIAELEKGSRAELDENPPR-------ELFSLVKNL 252
Query: 454 DDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE 633
+ + + + R D++H L+T V++ L T E+ + +
Sbjct: 253 NILLNNERQRYHKYRTTLTDLTHSLKTT-GVLQTTLRRLRTGKEITIEQAEPIMLAQIS- 310
Query: 634 QQCSDLIGALLLLSRNERGHGS-----SNVAKVAEQLLDSHRAQLGGKRIELILEDKHDL 798
+ S IG L + H +V V + L + K + L L+ +L
Sbjct: 311 -RISQQIGYYLHRASCGAEHNLLIREVHSVPAVLDGLCSALNKVYQRKGVVLTLDIPPEL 369
Query: 799 TVNAPESALSVALGNLIGNAVKYTLEG-RVTVRVLEKAVE--IQDTGPGLSEQDAAKLFQ 969
T ++ +GN++ NA KY LE ++V+ + + I D GPG+ E +FQ
Sbjct: 370 TFVGEKNDFMEVMGNILDNACKYCLEFLEISVQYSDHKLHLIIDDDGPGILESKREVIFQ 429
Query: 970 RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSV 1071
RG R G GIGL++ + + Y ++ +
Sbjct: 430 RGQRADRM--RPGQGIGLAVAVEIIEQYEGEIRI 461
>gi|421510|pir||S32935 kinB protein - Bacillus subtilis
Length = 428
Score = 46.9 bits (109), Expect = 3e-04
Identities = 46/204 (22%), Positives = 90/204 (43%), Gaps = 11/204 (5%)
Frame = +1
Query: 499 EFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXAE-QQCSDLIGALLLLS 675
E A V+HE+R PL V+RG +LL + K +E + +I L ++
Sbjct: 215 ELAASVAHEVRNPLTVVRGFVQLLFNDETLQNKSSADYKKLVLSELDRAQGIITNYLDMA 274
Query: 676 RNE----RGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLTVNAPESALSVALGN 843
+ + S + K L+ S+ K + + E + DL + + L A+ N
Sbjct: 275 KQQLYEKEVFDLSALIKETSSLMVSY---ANYKSVTVEAETEPDLLIYGDATKLKQAI-N 330
Query: 844 LIGNAVKYTLEGRVTVRVLEK------AVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQ 1005
L+ N+++ G+ + + K + I D G G+++ KL + Y + +
Sbjct: 331 LMKNSIEAVPHGKGMIHISAKRNGHTIMINITDNGVGMTDHQMQKLGEPYY----SLKTN 386
Query: 1006 GGGIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLR 1110
G G+GL++ + + + +S G T++
Sbjct: 387 GTGLGLTVTFSIIEHHHGTISFNSSFQKGTTVTIK 421
>gi|2648833 (AE000984) signal-transducing histidine kinase
[Archaeoglobus fulgidus]
Length = 528
Score = 46.5 bits (108), Expect = 4e-04
Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 7/265 (2%)
Frame = +1
Query: 271 ISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARA 450
+ +LV G L + +V + L +++ G+ + + EL A
Sbjct: 261 VGILVVLGYLLFVKRAVVDRVERLAESLGRIMEKGAGRVEVEGCDEITLLEKRINELLDA 320
Query: 451 LDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEMDPKXXXXXXXXXXA 630
+ + E+ Q R N + H++ L I+ A E+L + D +
Sbjct: 321 ISGKIEEVEELNQNLRLVNKLMRHDILNDLTSIQLAVEVLKEEGMND----GMVMNIERS 376
Query: 631 EQQCSDLIGALLLLSR---NERGHGSSNVAKVAEQLLDSHRAQLGGKRIELILEDKHDLT 801
+ +DLI + L E ++ + E++ + + ++ + + + DK+ ++
Sbjct: 377 VSRIADLIRRVRTLEEIMGREAELVEIDLKDIIEEIAEKYNVEVEVEGETMFMADKNVVS 436
Query: 802 VNAPESALSVALGNLIGNAVKYTLEGRVTVRVLEKA----VEIQDTGPGLSEQDAAKLFQ 969
V NLI N+V++ +V +R ++ V D G G+ E+ + ++F+
Sbjct: 437 V----------FDNLISNSVRHGNADKVFIRGEKRNGKCYVTFSDNGSGIPEEISDRIFE 486
Query: 970 RGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKV 1065
G+ ++G G+GL IV +L YG ++
Sbjct: 487 EGFS------TKGSGLGLYIVKKLMSRYGGEI 512
>gi|2500765|sp|Q47745|VANS_ENTFA SENSOR PROTEIN VANSB (VANCOMYCIN
B-TYPE RESISTANCE PROTEIN VANSB) (VANCOMYCIN HISTIDINE
PROTEIN KINASE) >gi|1209527 (U35369) protein histidine
kinase [Enterococcus faecalis]
Length = 447
Score = 46.1 bits (107), Expect = 5e-04
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 33/259 (12%)
Frame = +1
Query: 271 ISVLVFSGLSLLIGWWSASKVMKPVSDLAKLLRTYRGQTTNPKPLAPHFPDDEVGELARA 450
+ + + SLL + A ++ P+ LA P PL DE+G LA
Sbjct: 139 VMIAIMVVFSLLCAYIFARQMTTPIKALADSANKMANLKEVPPPLERK---DELGALAHD 195
Query: 451 LDDYSSRLTEVVQR--------------DREFNADVSHELRTPLAVIRGATELLLTK-PE 585
+ RL E + R R F A SHEL+TP+A + E +L +
Sbjct: 196 MHSMYIRLKETIARLEDEIAREHELEETQRYFFAAASHELKTPIAAVSVLLEGMLENIGD 255
Query: 586 MDPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERG----HGSSNVAKVAEQLLDSHRAQL 753
++Q + L L+S N+ ++ + +LL +
Sbjct: 256 YKDHSKYLRECIKMMDRQGKTISEILELVSLNDGRIVPIAEPLDIGRTVAELLPDFQTLA 315
Query: 754 GGKRIELILEDKHDLTVNAPESALSVALGNLIGNAVKYTLEG------------RVTVRV 897
+ + V + + AL N+I NAV+ T +G + + V
Sbjct: 316 EANNQRFVTDIPAGQIVLSDPKLIQKALSNVILNAVQNTPQGGEVRIWSEPGAEKYRLSV 375
Query: 898 LEKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGG--GIGLSIVSRLCD 1047
L V I DT +KLF YR A + G G+GL+IV + D
Sbjct: 376 LNMGVHIDDTA-------LSKLFIPFYRIDQARSRKSGRSGLGLAIVQKTLD 420
>gi|120208|sp|P10955|FIXL_RHIME SENSOR PROTEIN FIXL
>gi|628552|pir||S39984 nitrogen fixation regulatory
protein fixL - Rhizobium meliloti >gi|49404|emb|CAA79897|
(Z21854) FixL [Sinorhizobium meliloti]
Length = 505
Score = 45.3 bits (105), Expect = 0.001
Identities = 64/226 (28%), Positives = 109/226 (47%), Gaps = 32/226 (14%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDR--EFNADVSHELRTPLAVI----RGATELLLTKPEMDPK 597
E A L+ + L + + + E + ++HEL PL+ I G T LL +MD
Sbjct: 255 ESAARLEQIQAELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLR---DMDDA 311
Query: 598 XXXXXXXXXXAEQQCSDLIGALL-----LLSRNERGHGSSNVAKVAEQLLDSHRAQLGGK 762
S G ++ +++ E ++ K+ E+ S L G
Sbjct: 312 VATRIREALEEVASQSLRAGQIIKHLREFVTKGETEKAPEDIRKLVEE---SAALALVGS 368
Query: 763 R-------------IELILEDKHDLTVNAPESALSVALGNLIGNAV---KYTLEGRVTVR 894
R E++L D+ + L NL+ NA+ ++ +T+R
Sbjct: 369 REQGVRTVFEYLPGAEMVLVDRIQV---------QQVLINLMRNAIEAMRHVDRRELTIR 419
Query: 895 VL-----EKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGW 1059
+ E AV ++DTG G+ E+ A +LF + + T A G GIGLSI R+ + +G
Sbjct: 420 TMPADPGEVAVVVEDTGGGIPEEVAGQLF-KPFVTTKAS---GMGIGLSISKRIVEAHGG 475
Query: 1060 KVSVQPGDSYGVIATLRF 1113
+++V ++ G AT RF
Sbjct: 476 EMTVSKNEAGG--ATFRF 491
>gi|152215 (J03174) fixL protein (5' end pot.); putative [Rhizobium
meliloti]
Length = 464
Score = 45.3 bits (105), Expect = 0.001
Identities = 64/226 (28%), Positives = 109/226 (47%), Gaps = 32/226 (14%)
Frame = +1
Query: 436 ELARALDDYSSRLTEVVQRDR--EFNADVSHELRTPLAVI----RGATELLLTKPEMDPK 597
E A L+ + L + + + E + ++HEL PL+ I G T LL +MD
Sbjct: 214 ESAARLEQIQAELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLR---DMDDA 270
Query: 598 XXXXXXXXXXAEQQCSDLIGALL-----LLSRNERGHGSSNVAKVAEQLLDSHRAQLGGK 762
S G ++ +++ E ++ K+ E+ S L G
Sbjct: 271 VATRIREALEEVASQSLRAGQIIKHLREFVTKGETEKAPEDIRKLVEE---SAALALVGS 327
Query: 763 R-------------IELILEDKHDLTVNAPESALSVALGNLIGNAV---KYTLEGRVTVR 894
R E++L D+ + L NL+ NA+ ++ +T+R
Sbjct: 328 REQGVRTVFEYLPGAEMVLVDRIQV---------QQVLINLMRNAIEAMRHVDRRELTIR 378
Query: 895 VL-----EKAVEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGW 1059
+ E AV ++DTG G+ E+ A +LF + + T A G GIGLSI R+ + +G
Sbjct: 379 TMPADPGEVAVVVEDTGGGIPEEVAGQLF-KPFVTTKAS---GMGIGLSISKRIVEAHGG 434
Query: 1060 KVSVQPGDSYGVIATLRF 1113
+++V ++ G AT RF
Sbjct: 435 EMTVSKNEAGG--ATFRF 450
>gi|1710788|sp|P18392|RSTB_ECOLI SENSOR PROTEIN RSTB >gi|1079808
(U41101) RstB [Escherichia coli]
>gi|1742648|dbj|BAA15347| (D90803) Sensor protein RstB
(EC 2.7.3.-). [Escherichia coli]
>gi|1742659|dbj|BAA15357| (D90804) Sensor protein RstB
(EC 2.7.3.-). [Escherichia coli] >gi|1787894 (AE000256)
sensor histidine protein kinase (RstA regulator)
[Escherichia coli]
Length = 433
Score = 44.9 bits (104), Expect = 0.001
Identities = 57/227 (25%), Positives = 100/227 (43%), Gaps = 15/227 (6%)
Frame = +1
Query: 412 HFPDDEVGE-LARALDDYSSRLTEVVQRDREFNADVSHELRTPLAVIRGATELLLTKPEM 588
HF + E L A + + + ++ ++ ++HELRTPL +R E+
Sbjct: 184 HFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEM------S 237
Query: 589 DPKXXXXXXXXXXAEQQCSDLIGALLLLSRNERGHGSSNVAKVAEQL-LDSHRAQLGGKR 765
D Q LI LL +R +R ++++ L L +H A
Sbjct: 238 DNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLAD----- 292
Query: 766 IELILEDKH---DLTVNAPESALSV-----ALGNLIGNAVKY---TLEGRVTVRVLEKAV 912
I+ + DK V +AL + L NL+ NA++Y T+E + + +
Sbjct: 293 IQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATL 352
Query: 913 EIQDTGPGLSEQDAAKLFQRGYR-GTHAGHSQGG-GIGLSIVSRLCDLYGWKVSVQPGDS 1086
++D GPG++ ++ +F+ R S GG G+GL+IV + G V+ +
Sbjct: 353 IVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSEL 412
Query: 1087 YG 1092
G
Sbjct: 413 GG 414
>gi|2293176 (AF008220) signal transduction protein kinase [Bacillus
subtilis] >gi|2635523|emb|CAB15017| (Z99119) similar to
two-component sensor histidine kinase [YtsA] [Bacillus
subtilis]
Length = 334
Score = 44.1 bits (102), Expect = 0.002
Identities = 25/97 (25%), Positives = 49/97 (49%), Gaps = 5/97 (5%)
Frame = +1
Query: 823 LSVALGNLIGNAVKYTLEGRVTVRVLEKA----VEIQDTGPGLSEQDAAKLFQRGYRGTH 990
L+ + L+ NAVKY+ + ++ +K ++++D G G+ +D ++F +G+ T
Sbjct: 221 LAFIIRQLLTNAVKYSEASEIEIKSFQKGEQTQLQVKDCGRGIDPKDVPRIFDKGFTSTT 280
Query: 991 AGHSQGG-GIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRF 1113
H Q G+GL + + + V+ G + TL F
Sbjct: 281 DHHDQASTGMGLYLAKKAAAPLLIHIDVESEFGAGTVFTLTF 322
>gi|809670|emb|CAA68601| (Y00538) phoM protein (1 is 3rd base in
codon) [Escherichia coli]
Length = 94
Score = 43.8 bits (101), Expect = 0.003
Identities = 20/70 (28%), Positives = 41/70 (58%)
Frame = +1
Query: 910 VEIQDTGPGLSEQDAAKLFQRGYRGTHAGHSQGGGIGLSIVSRLCDLYGWKVSVQPGDSY 1089
+++ DTG G+ + +++F+R Y A + G+GL+ VS + L+ +V+++
Sbjct: 22 LKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFNGEVTLRNVQEG 81
Query: 1090 GVIATLRFFK 1119
GV+A+LR +
Sbjct: 82 GVLASLRLHR 91
>gi|4512392|dbj|BAA75355.1| (AB011838) similar to B.subtilis ytsB
gene(64%-identity) [Bacillus halodurans]
Length = 261
Score = 43.8 bits (101), Expect = 0.003
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +1
Query: 823 LSVALGNLIGNAVKYTLEGRVTVR----VLEKAVEIQDTGPGLSEQDAAKLFQRGYRGTH 990
LS L L+ NAVKY+ + ++ + VE+ D G G+ +D ++F++G+ T
Sbjct: 148 LSFILRQLLSNAVKYSEASDIIIKSDVVSGKTVVEVTDFGRGIEPKDLPRIFEKGFTSTK 207
Query: 991 AGHSQGG-GIGLSIVSRLCDLYGWKVSVQPGDSYGVIATLRFFK 1119
+ G G+GL + R+ + ++V G TL F K
Sbjct: 208 TDQTNGATGMGLYLAKRVAEPLLIDLAVSSTVGEGTTFTLTFPK 251
Database: nr
Posted date: Feb 13, 2000 1:18 AM
Number of letters in database: 140,124,617
Number of sequences in database: 455,460
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319197785
Number of Sequences: 455460
Number of extensions: 7466779
Number of successful extensions: 21225
Number of sequences better than 10.0: 737
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 275
Number of HSP's that attempted gapping in prelim test: 20403
Number of HSP's gapped (non-prelim): 569
length of query: 374
length of database: 140,124,617
effective HSP length: 55
effective length of query: 318
effective length of database: 115,074,317
effective search space: 36593632806
effective search space used: 36593632806
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)