BLASTX 2.0.10 [Aug-26-1999]
Query= XF-03D03-GL04
(1488 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|2177098 (U67894) UDP-MurNAc-Dipeptide: meso-diaminopimelate ... 326 3e-88
gi|541194|pir||S40595 UDP-N-acetylmuramoylalanyl-D-glutamate--2... 324 1e-87
gi|127538|sp|P22188|MURE_ECOLI UDP-N-ACETYLMURAMOYLALANYL-D-GLU... 324 1e-87
gi|1171073|sp|P45060|MURE_HAEIN UDP-N-ACETYLMURAMOYLALANYL-D-GL... 309 3e-83
gi|6525303|gb|AAD29718.2|AF141867_1 (AF141867) probable UDP-N-a... 303 2e-81
gi|417328|sp|Q03523|MURE_BACSU UDP-N-ACETYLMURAMOYLALANYL-D-GLU... 289 3e-77
gi|5689961|emb|CAB51998.1| (AL109663) putative UDP-N-acetylmura... 279 4e-74
gi|2984050 (AE000754) UDP-MurNac-tripeptide synthetase [Aquifex... 262 5e-69
gi|3122401|sp|O06219|MURE_MYCTU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 260 2e-68
gi|3122415|sp|Q55469|MURE_SYNY3 UDP-N-ACETYLMURAMOYLALANYL-D-GL... 255 6e-67
gi|5834375|gb|AAD53941.1|AF179611_25 (AF179611) UDP-N-acetylmur... 252 7e-66
gi|6093448|sp|O69557|MURE_MYCLE UDP-N-ACETYLMURAMOYLALANYL-D-GL... 249 4e-65
gi|2498598|sp|Q59650|MURE_PSEAE UDP-N-ACETYLMURAMOYLALANYL-D-GL... 242 8e-63
gi|4376699|gb|AAD18562| (AE001625) N-Acetylmuramoylalanylglutam... 236 3e-61
gi|3328681|gb|AAC67862.1| (AE001299) UDP-N-acetylmuramoylalanyl... 233 2e-60
gi|6457968|gb|AAF09877.1|AE001890_9 (AE001890) UDP-N-acetylmura... 226 4e-58
gi|4980735|gb|AAD35328.1|AE001707_15 (AE001707) UDP-N-acetylmur... 222 6e-57
gi|6093449|sp|O05954|MURE_RICPR UDP-N-ACETYLMURAMOYLALANYL-D-GL... 221 1e-56
gi|6456164|gb|AAF09152.1|AC011622_9 (AC011622) putative UDP-N-a... 203 3e-51
gi|3256223|emb|CAA74740| (Y14370) UDP-N-acetylmuramyl-tripeptid... 199 4e-50
gi|6093450|sp|O83903|MURE_TREPA UDP-N-ACETYLMURAMOYLALANYL-D-GL... 195 7e-49
gi|4156007 (AE001561) UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE... 178 8e-44
gi|2314673|gb|AAD08535.1| (AE000648) UDP-MurNac-tripeptide synt... 175 9e-43
gi|3914073|sp|O51219|MURE_BORBU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 155 1e-36
gi|6093446|sp|O85298|MURE_BUCAP UDP-N-ACETYLMURAMOYLALANYL-D-GL... 128 1e-28
gi|6093447|sp|O69290|MURE_CAMJE UDP-N-ACETYLMURAMOYLALANYL-D-GL... 111 2e-23
gi|5689960|emb|CAB51997.1| (AL109663) putative UDP-N-acetylmura... 84 2e-15
gi|5689958|emb|CAB51995.1| (AL109663) putative UDP-N-acetylmura... 76 7e-13
gi|2621604 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase... 75 2e-12
gi|3122417|sp|O33804|MURF_STRTO PROBABLE UDP-N-ACETYLMURAMOYLAL... 68 2e-10
gi|6225735|sp|Q9ZDC2|MURD_RICPR UDP-N-ACETYLMURAMOYLALANINE--D-... 67 4e-10
gi|6460318|gb|AAF12038.1|AE002079_3 (AE002079) UDP-N-acetylmura... 66 8e-10
gi|2621606 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase... 66 1e-09
gi|3122403|sp|O06222|MURD_MYCTU UDP-N-ACETYLMURAMOYLALANINE--D-... 62 9e-09
gi|2507071|sp|P11880|MURF_ECOLI UDP-N-ACETYLMURAMOYLALANYL-D-GL... 62 9e-09
gi|96537|pir||S10691 UDP-N-acetylmuramyl-tripeptide synthetase ... 61 2e-08
gi|2177096 (U67893) UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding En... 61 3e-08
gi|78921|pir||S04846 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6... 60 4e-08
gi|3122410|sp|P73668|MURD_SYNY3 UDP-N-ACETYLMURAMOYLALANINE--D-... 59 7e-08
gi|3393028|emb|CAA06440| (AJ005201) cyanophycin synthetase [Ana... 59 1e-07
gi|3122402|sp|O06220|MURF_MYCTU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 59 1e-07
gi|5834372|gb|AAD53938.1|AF179611_22 (AF179611) UDP-N-acetylmur... 58 2e-07
gi|6093445|sp|O83873|MURD_TREPA UDP-N-ACETYLMURAMOYLALANINE--D-... 57 4e-07
gi|3080475|emb|CAA18670.1| (AL022602) udp-n-acetylmuramoylalani... 57 5e-07
gi|6225734|sp|Q9ZDS8|MURC_RICPR UDP-N-ACETYLMURAMATE--ALANINE L... 55 1e-06
gi|5834369|gb|AAD53935.1|AF179611_19 (AF179611) UDP-N-acetylmur... 54 3e-06
gi|3090871 (AF035938) uridine diphosphate N-acetylmuramoyl-L-al... 54 3e-06
gi|417327|sp|Q03522|MURD_BACSU UDP-N-ACETYLMURAMOYLALANINE--D-G... 53 6e-06
gi|1652973|dbj|BAA17890| (D90910) hypothetical protein [Synecho... 53 6e-06
gi|1171072|sp|P45063|MURD_HAEIN UDP-N-ACETYLMURAMOYLALANINE--D-... 53 6e-06
gi|2983375 (AE000709) UDP-MURNAC-pentapeptide sythetase [Aquife... 52 1e-05
gi|3024202|sp|P96613|MURF_BACSU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 52 1e-05
gi|39993|emb|CAA45555| (X64258) UDP-N-acetylmuramoylalanine--D-... 52 1e-05
gi|3122408|sp|O31211|MURC_STAAU UDP-N-ACETYLMURAMATE--ALANINE L... 52 2e-05
gi|2983764 (AE000736) UDP-N-acetylmuramate-alanine ligase [Aqui... 52 2e-05
gi|4009480 (AF068902) D-glutamic acid adding enzyme MurD [Strep... 50 5e-05
gi|3122404|sp|O06225|MURC_MYCTU UDP-N-ACETYLMURAMATE--ALANINE L... 50 5e-05
gi|3080477|emb|CAA18672.1| (AL022602) udp-n-acetylmuramoylalany... 50 6e-05
gi|4377221|gb|AAD19039| (AE001670) Muramoylalanine-Glutamate Li... 49 8e-05
gi|1171075|sp|P45450|MURF_SYNY3 UDP-N-ACETYLMURAMOYLALANYL-D-GL... 48 1e-04
gi|4980734|gb|AAD35327.1|AE001707_14 (AE001707) UDP-N-acetylmur... 48 1e-04
gi|1653256|dbj|BAA18171| (D90912) UDP-N-acetylmuramoylalanyl-D-... 47 4e-04
gi|3122405|sp|O07108|MURD_ENTFA UDP-N-ACETYLMURAMOYLALANINE--D-... 46 6e-04
gi|6093451|sp|O83401|MURF_TREPA UDP-N-ACETYLMURAMOYLALANYL-D-GL... 46 6e-04
gi|5834374|gb|AAD53940.1|AF179611_24 (AF179611) UDP-N-acetylmur... 46 7e-04
gi|127537|sp|P14900|MURD_ECOLI UDP-N-ACETYLMURAMOYLALANINE--D-G... 46 0.001
gi|4377219|gb|AAD19037| (AE001670) Muramoyl-DAP Ligase [Chlamyd... 46 0.001
gi|42046|emb|CAA35611| (X17609) UDP-N-acetylmuramoyl-L-alanine:... 45 0.002
gi|6458474|gb|AAF10342.1|AE001931_13 (AE001931) UDP-N-acetylmur... 44 0.004
gi|3329220|gb|AAC68353.1| (AE001348) UDP-N-acetylmuramoylalanin... 44 0.004
gi|4980729|gb|AAD35322.1|AE001707_9 (AE001707) UDP-N-acetylmura... 43 0.005
gi|6458326|gb|AAF10205.1|AE001920_8 (AE001920) UDP-N-acetylmura... 43 0.005
gi|2981818|pdb|1UAG| Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamat... 43 0.005
gi|2149895 (U94706) D-glutamic acid adding enzyme [Staphylococc... 43 0.008
gi|3122409|sp|O33595|MURD_STAAU UDP-N-ACETYLMURAMOYLALANINE--D-... 43 0.008
gi|2463563|dbj|BAA22556| (AB007500) MURD [Staphylococcus aureus] 43 0.008
gi|3183540|sp|P40778|MURC_BACSU UDP-N-ACETYLMURAMATE--ALANINE L... 41 0.024
gi|556014 (L31845) UDP-N-acetyl muramate-alanine ligase [Bacill... 41 0.024
gi|4406514|gb|AAD20011| (AF123319) UDP-N-acetylmuramoylalanyl-D... 41 0.032
gi|4455041|gb|AAD21045| (AF116463) unknown [Streptomyces lincol... 40 0.055
gi|1922269|emb|CAA71945| (Y11066) klu [Drosophila melanogaster] 40 0.055
gi|3868935|dbj|BAA34293| (AB015023) MurC [Corynebacterium gluta... 39 0.072
gi|3329218|gb|AAC68351.1| (AE001348) UDP-N-acetylmuramoylalanyl... 38 0.16
gi|103364|pir||B36664 S59/4 homeotic protein - fruit fly (Droso... 38 0.16
gi|1173846 (U39455) envelope glycoprotein precursor [Crimean-Co... 38 0.21
gi|3914074|sp|O51532|MURD_BORBU UDP-N-ACETYLMURAMOYLALANINE--D-... 38 0.21
gi|3123061|sp|O26631|Y531_METTH HYPOTHETICAL PROTEIN MTH531 >gi... 38 0.21
gi|5689419|dbj|BAA82993.1| (AB028964) KIAA1041 protein [Homo sa... 38 0.28
gi|4467980|emb|CAB37925| (AJ133272) atrophin-1 [Pongo pygmaeus] 38 0.28
gi|2960136|emb|CAA18034.1| (AL022121) hypothetical protein Rv37... 38 0.28
gi|6634121|emb|CAB64385.1| (AJ252082) BAB-I protein [Drosophila... 38 0.28
gi|4154982 (AE001479) UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE ... 37 0.36
gi|3980124|emb|CAA80468| (Z22814) unnamed protein product [Homo... 37 0.36
gi|2547264 (U41628) syndecan-1 [Xenopus laevis] 37 0.36
gi|123395|sp|P22807|HMN1_DROME HOMEOBOX PROTEIN NK-1 (S59/2) >g... 37 0.47
gi|1732417 (U47924) DRPLA [Homo sapiens] 37 0.47
gi|2984290 (AE000771) UDP-N-acetylmuramoylalanine-D-glutamate l... 37 0.47
gi|6119851|gb|AAF04257.1| (AF139114) subtilisin-like serine pro... 37 0.47
gi|1698726 (U69551) histidine-rich protein II [Plasmodium falci... 36 0.62
gi|2623666 (AF030429) dentatorubro-pallidoluysian atrophy prote... 36 0.62
gi|2313605|gb|AAD07560.1| (AE000564) UDP-N-acetylmuramoylalanin... 36 0.62
gi|4494984|gb|AAD21406.1| (AF083501) latent nuclear antigen [Ma... 36 0.81
gi|4336734|gb|AAD17923| (AF104261) Pax transcription activation... 36 1.1
gi|1304439 (U27488) glycoprotein gX [Suid herpesvirus 1] 36 1.1
gi|4490330|emb|CAB38612.1| (AL035656) splicing factor-like prot... 36 1.1
gi|2896841 (U93003) hunchback protein [Drosophila cyrtoloma] >g... 36 1.1
gi|1706519|sp|P54259|DRPL_HUMAN ATROPHIN-1 (DENTATORUBRAL-PALLI... 35 1.4
gi|1732444|dbj|BAA07534| (D38529) DRPLA protein [Homo sapiens] 35 1.4
gi|4503397|ref|NP_001931.1|| atrophin-1 >gi|915326 (U23851) atr... 35 1.4
gi|1082343|pir||S50832 DRPLA protein - human 35 1.4
gi|399911|sp|P18488|HMES_DROME EMPTY SPIRACLES HOMEOTIC PROTEIN... 35 1.4
gi|2429362 (AF020261) proline rich protein [Santalum album] 35 1.4
gi|2896856 (U93009) hunchback protein [Drosophila lineosetae] 35 1.4
gi|6554167|gb|AAD18135.2| (AF085746) zinc finger transcription ... 35 1.8
gi|5911292|gb|AAD55738.1|AF184227_1 (AF184227) tty [Drosophila ... 35 1.8
gi|2896836 (U93001) hunchback protein [Drosophila crassifemur] 35 1.8
gi|1082604|pir||S53363 mucin 5AC (clone JER58) - human (fragmen... 35 1.8
gi|3004653 (AF017777) tweety [Drosophila melanogaster] 35 1.8
gi|1703594 (U80439) coded for by C. elegans cDNA yk7c8.5; coded... 35 1.8
gi|119714|sp|P13983|EXTN_TOBAC EXTENSIN PRECURSOR (CELL WALL HY... 35 1.8
gi|3876484|emb|CAB01755.1| (Z78543) predicted using Genefinder;... 35 1.8
gi|3876483|emb|CAB01754.1| (Z78543) cDNA EST EMBL:C10430 comes ... 35 1.8
gi|6572317|emb|CAB62917.1| (AL080243) bA12M9.3 (E1A binding pro... 34 2.4
gi|2896826 (U92997) hunchback protein [Drosophila adiastola] 34 2.4
gi|188878 (M57417) mucin [Homo sapiens] 34 2.4
gi|4467439|emb|CAB37867| (AJ133273) atrophin-1 [Hylobates lar] 34 2.4
gi|4877961|gb|AAD31511.1| (AF142344) histidine-rich protein II ... 34 3.1
gi|4206763|gb|AAD11796.1| (AF104328) cell wall-plasma membrane ... 34 3.1
gi|330130 (M17921) latency associated transcript (LAT) ORF-2 [H... 34 3.1
gi|79833|pir||JQ0405 hypothetical 119.5K protein (uvrA region) ... 34 3.1
gi|2896901 (U93027) hunchback protein [Drosophila dasycnemia] 34 3.1
gi|422309|pir||S31781 HRPII protein - Plasmodium falciparum >gi... 34 3.1
gi|2281102|gb|AAB64038.1| (AC002333) putative SF16 protein {Hel... 34 3.1
gi|1019433 (U32346) mucin-like protein; Method: conceptual tran... 34 3.1
gi|2196755 (AF002988) forkhead homolog [Ciona intestinalis] 34 4.1
gi|4104321 (AF034582) vesicle associated protein [Rattus norveg... 34 4.1
gi|1067167|emb|CAA49544| (X69924) HRPII [Plasmodium falciparum] 34 4.1
gi|4680494|gb|AAD27674.1|AF119222_6 (AF119222) hypothetical pro... 34 4.1
gi|6005856|ref|NP_009183.1|| Retina-derived POU-domain factor-1... 34 4.1
gi|1890302 (U91934) retina-derived POU-domain factor-1 [Homo sa... 34 4.1
gi|3064144 (AF036407) mucin-like protein [Trypanosoma cruzi] 34 4.1
gi|3879830|emb|CAB03354.1| (Z81122) Similartiy to human KIAA017... 34 4.1
gi|5824613|emb|CAB54313.1| (Z81122) T13F2.3b [Caenorhabditis el... 34 4.1
gi|1168933|sp|P40954|CHI3_CANAL CHITINASE 3 PRECURSOR >gi|57142... 34 4.1
gi|4557557|ref|NP_001420.1|| E1A binding protein p300 >gi|30243... 34 4.1
gi|3150111|emb|CAA19164.1| (AL023596) hypothetical protein MLCB... 34 4.1
gi|4467417|emb|CAB37864| (AJ133271) atrophin-1 [Gorilla gorilla] 34 4.1
gi|4467947|emb|CAB37921| (AJ133274) atrophin-1 [Macaca fascicul... 34 4.1
gi|2896861 (U93011) hunchback protein [Drosophila sp. 'white ti... 34 4.1
gi|2429508 (AF025467) contains weak similarity to human mitotic... 33 5.4
gi|2708784 (AF020538) MADS-box homolog Umc1 [Ustilago maydis] 33 5.4
gi|4589703|dbj|BAA76869.1| (D83534) Dfd [Bombyx mori] 33 5.4
gi|1419220|emb|CAA65618| (X96876) putative ORF [Saccharomyces c... 33 5.4
gi|4467977|emb|CAB37923| (AJ133270) atrophin-1 [Pan paniscus] 33 5.4
gi|516695|dbj|BAA05378| (D26324) unknown protein [Gallus gallus] 33 5.4
gi|84221|pir||A25942 histidine/alanine-rich protein II - Plasmo... 33 7.1
gi|3219995|sp|P37773|MPL_ECOLI UDP-N-ACETYLMURAMATE:L-ALANYL-GA... 33 7.1
gi|5533305|gb|AAD45121.1|AF163302_1 (AF163302) somatostatin rec... 33 7.1
gi|84948|pir||A34218 homeotic protein ems - fruit fly (Drosophi... 33 7.1
gi|2498942|sp|Q62203|SP62_MOUSE SPLICEOSOME ASSOCIATED PROTEIN ... 33 7.1
gi|123736|sp|P13361|HUNB_DROVI HUNCHBACK PROTEIN >gi|85249|pir|... 33 7.1
gi|5815245|gb|AAD52614.1|AF175223_1 (AF175223) SANT domain prot... 33 7.1
gi|123526|sp|P05227|HRP1_PLAFA HISTIDINE-RICH PROTEIN PRECURSOR... 33 7.1
gi|4885239|ref|NP_005240.1|| forkhead box G1B >gi|1705454|sp|P5... 33 7.1
gi|1079035|pir||S51599 Om(2D) protein - fruit fly (Drosophila a... 33 7.1
gi|464488|sp|P08798|PSV_DICDI PRESPORE VESICLE PROTEIN PRECURSO... 33 7.1
gi|1082850|pir||A54743 transcription factor HFK1 - human 33 7.1
gi|3980527|gb|AAC83404.1| (AC005483) retina-derived POU-domain ... 32 9.2
gi|4503395|ref|NP_003668.1|| density-regulated protein >gi|6015... 32 9.2
gi|4755083|gb|AAC02985.2| (AF038554) density regulated protein ... 32 9.2
gi|4775349|emb|CAB42602.1| (AJ012582) hyperpolarization-activat... 32 9.2
gi|5105330|dbj|BAA80643.1| (AP000062) 101aa long hypothetical p... 32 9.2
gi|2117195|emb|CAB09016| (Z95584) hypothetical protein Rv1157c ... 32 9.2
gi|1732051 (U59482) mucin-like apoprotein [Trypanosoma cruzi] 32 9.2
gi|5105932|dbj|BAA81244.1| (AP000063) 231aa long hypothetical p... 32 9.2
gi|2062362 (U64896) vp78 [Anagrapha falcifera nuclear polyhedro... 32 9.2
gi|5523992|gb|AAD44048.1|AF109317_1 (AF109317) mutant VeA1 prot... 32 9.2
gi|643430 (U17705) ICP4 protein [Gallid herpesvirus 1] 32 9.2
gi|3329358 (U95045) velvet A [Emericella nidulans] >gi|5381335|... 32 9.2
gi|103058|pir||A32584 Abd-B protein - fruit fly (Drosophila mel... 32 9.2
gi|417175|sp|Q02362|ICP4_HSVMG TRANS-ACTING TRANSCRIPTIONAL ACT... 32 9.2
gi|4539380|emb|CAB37446.1| (AL035526) putative protein [Arabido... 32 9.2
>gi|2177098 (U67894) UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase
[Escherichia coli]
Length = 495
Score = 326 bits (827), Expect = 3e-88
Identities = 206/480 (42%), Positives = 259/480 (53%), Gaps = 14/480 (2%)
Frame = +1
Query: 28 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 207
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 208 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQ 360
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T Q
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 125
Query: 361 LLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVS 540
LLAQ LG SA GT+G GL +V+PT TT + + LA L D+GA AMEVS
Sbjct: 126 LLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVS 185
Query: 541 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPF 720
SH L Q RV + + VFTNL+RDHLDYHGDMEHY AAK L++ A+IN DD
Sbjct: 186 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEV 245
Query: 721 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHL---SLNLQGIGFDLVIGAD--HASVRSP 885
G R LAK V VS+ H + + + L +N G + + + S
Sbjct: 246 GRR---WLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESH 302
Query: 886 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHT 1065
LMG FNV NLL L AL Y L+++ + L+P+ GRM ++ G+P DYAHT
Sbjct: 303 LMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-KVFTAPGKPTVVVDYAHT 361
Query: 1066 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 1245
PDAL + L + H G+L CVFGCGG+RD+GKR M IAE ADV VTDDNPR E+
Sbjct: 362 PDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEP 421
Query: 1246 DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPF 1425
I+ DILAG KV R DVVL+AGKGHE YQ V R +
Sbjct: 422 RAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY 481
Query: 1426 DDTEVARRVLAAMS 1467
D R+L +S
Sbjct: 482 SDRVTVARLLGVIS 495
>gi|541194|pir||S40595
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) murE - Escherichia
coli
Length = 495
Score = 324 bits (822), Expect = 1e-87
Identities = 205/480 (42%), Positives = 258/480 (53%), Gaps = 14/480 (2%)
Frame = +1
Query: 28 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 207
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 208 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQ 360
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T Q
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 125
Query: 361 LLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVS 540
LLAQ LG SA GT+G GL +V+PT TT + + LA L D+GA AMEVS
Sbjct: 126 LLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVS 185
Query: 541 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPF 720
SH L Q RV + + VFTNL+RDHLDYHGDMEHY AAK L++ A+IN DD
Sbjct: 186 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEV 245
Query: 721 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHL---SLNLQGIGFDLVIGAD--HASVRSP 885
G R LAK V VS+ H + + + L +N G + + + S
Sbjct: 246 GRR---WLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESH 302
Query: 886 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHT 1065
LMG FNV NLL L AL Y L+++ + L+P+ GRM + G+P DYAHT
Sbjct: 303 LMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-EVFTAPGKPTVVVDYAHT 361
Query: 1066 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 1245
PDAL + L + H G+L CVFGCGG+RD+GKR M IAE ADV VTDDNPR E+
Sbjct: 362 PDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEP 421
Query: 1246 DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPF 1425
I+ DILAG KV R DVVL+AGKGHE YQ V R +
Sbjct: 422 RAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY 481
Query: 1426 DDTEVARRVLAAMS 1467
D R+L ++
Sbjct: 482 SDRVTVARLLGVIA 495
>gi|127538|sp|P22188|MURE_ECOLI
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|96533|pir||S14384
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) - Escherichia coli
>gi|285768|dbj|BAA01350| (D10483) UDP-MurNac-tripeptide
synthetase (MurE) [Escherichia coli]
>gi|581032|emb|CAA38862.1| (X55034) UDP-MurNac-tripeptide
synthetase (MurE) [Escherichia coli] >gi|1786273
(AE000118) meso-diaminopimelate-adding enzyme
[Escherichia coli]
Length = 495
Score = 324 bits (822), Expect = 1e-87
Identities = 205/480 (42%), Positives = 258/480 (53%), Gaps = 14/480 (2%)
Frame = +1
Query: 28 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 207
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 208 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQ 360
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T Q
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 125
Query: 361 LLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVS 540
LLAQ LG SA GT+G GL +V+PT TT + + LA L D+GA AMEVS
Sbjct: 126 LLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVS 185
Query: 541 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPF 720
SH L Q RV + + VFTNL+RDHLDYHGDMEHY AAK L++ A+IN DD
Sbjct: 186 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEV 245
Query: 721 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHL---SLNLQGIGFDLVIGAD--HASVRSP 885
G R LAK V VS+ H + + + L +N G + + + S
Sbjct: 246 GRR---WLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESH 302
Query: 886 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHT 1065
LMG FNV NLL L AL Y L+++ + L+P+ GRM + G+P DYAHT
Sbjct: 303 LMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-EVFTAPGKPTVVVDYAHT 361
Query: 1066 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 1245
PDAL + L + H G+L CVFGCGG+RD+GKR M IAE ADV VTDDNPR E+
Sbjct: 362 PDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEP 421
Query: 1246 DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPF 1425
I+ DILAG KV R DVVL+AGKGHE YQ V R +
Sbjct: 422 RAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY 481
Query: 1426 DDTEVARRVLAAMS 1467
D R+L ++
Sbjct: 482 SDRVTVARLLGVIA 495
>gi|1171073|sp|P45060|MURE_HAEIN
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|1075415|pir||H64184 UDP-MurNac-tripeptide synthetase
(murE) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574688 (U32793) UDP-N-acetylmuramyl-tripeptide
synthetase (murE) [Haemophilus influenzae Rd]
Length = 488
Score = 309 bits (784), Expect = 3e-83
Identities = 187/469 (39%), Positives = 251/469 (52%), Gaps = 11/469 (2%)
Frame = +1
Query: 37 DIPQAR-DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ 213
++P+ + D+ + +V+DSR+V+ GD G FI+ A GA A++ E
Sbjct: 9 NLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSS 68
Query: 214 GV-------SVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQ 372
+VP + + L L ++AD F+ PS +T+VGVTGTNGKT+ QLLAQ
Sbjct: 69 EHLTVAFIGNVP--VVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQLLAQ 126
Query: 373 AWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHAL 552
LG R+A GT+G GL+ Q+V TT +++ L+ + GA ++EVSSH L
Sbjct: 127 WAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFTSIEVSSHGL 186
Query: 553 DQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRL 732
Q RV+ +H+ +FTNLTRDHLDYH ME+Y AAK RLF D Q VIN DD G +
Sbjct: 187 AQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVINADDEIGYQW 246
Query: 733 LHGLAKGM---RRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFN 903
L L + V H + H I F+ G + + SPL+G FN
Sbjct: 247 LTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG--NGVLHSPLIGAFN 304
Query: 904 VDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQ 1083
V NLL V L + Y L + A +L+ + GRM + +P DYAHTPDAL +
Sbjct: 305 VSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMI-QYPNKPTVIVDYAHTPDALEK 363
Query: 1084 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVAD 1263
L + H G L C+FGCGG+RDRGKR MA +AE A+ + VT DNPR E I D
Sbjct: 364 ALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQIETD 423
Query: 1264 ILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVA 1443
I+AGF V + DR DV+LIAGKGHE YQ + F D E+A
Sbjct: 424 IVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGSEVVHFSDQEIA 483
>gi|6525303|gb|AAD29718.2|AF141867_1 (AF141867) probable
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Vibrio cholerae]
Length = 495
Score = 303 bits (768), Expect = 2e-81
Identities = 188/471 (39%), Positives = 258/471 (53%), Gaps = 12/471 (2%)
Frame = +1
Query: 43 PQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ--- 213
P+ +VI+ L +DSR ++ GD G FI+ A A+GA +L E A
Sbjct: 20 PKLAALVITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNG 79
Query: 214 ------GVSVPDGAIAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQ 372
GV V I + L L +A R +G H +Q ++GVTGTNGKT+ QL+AQ
Sbjct: 80 WVEYRAGVPV----IYLAELGQHLSELAGRLYGGHHNQ---LIGVTGTNGKTTITQLIAQ 132
Query: 373 AWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHAL 552
LG ++A GT G G + + P TT LQ+ L L + GAQ A+E SSH L
Sbjct: 133 WLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGL 192
Query: 553 DQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRL 732
QGRV +H+ VF+NL+RDHLDYHG ME Y AAK LF+ Q A+INVDD G +
Sbjct: 193 VQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQW 252
Query: 733 LHGLAKGMRRVGVSVC--GHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNV 906
+ L + +GVS+ +T + A+ ++ GI + + +PL+G FN
Sbjct: 253 VKQLPQA---IGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNA 309
Query: 907 DNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQV 1086
NLL L +L + S + A LRP+ GRM L ++ + DYAHTPDAL +
Sbjct: 310 CNLLLALATLLSLGFEKSALLATAPKLRPVLGRM-ELFQREQKAKMVVDYAHTPDALEKA 368
Query: 1087 LSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADI 1266
L +L H G+L + GCGG+RDRGKR MA IAE AD V +TDDNPR E IVAD+
Sbjct: 369 LRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADM 428
Query: 1267 LAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVAR 1446
+AG P ++ R +D++L+AGKGHE YQ +A + D E A+
Sbjct: 429 VAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQ 488
Query: 1447 RVL 1455
++L
Sbjct: 489 QLL 491
>gi|417328|sp|Q03523|MURE_BACSU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|477729|pir||B47691
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) - Bacillus
subtilis >gi|40162|emb|CAA78767| (Z15056) murE [Bacillus
subtilis] >gi|2633889|emb|CAB13391| (Z99111)
UDP-N-acetylmuramoylananine-D-glutamate-2,6-
diaminopimelate ligase [Bacillus subtilis]
Length = 494
Score = 289 bits (733), Expect = 3e-77
Identities = 178/482 (36%), Positives = 246/482 (50%), Gaps = 7/482 (1%)
Frame = +1
Query: 34 PDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ 213
P + ++D I+ + MDSREV+ G G F + A GA AI+ E
Sbjct: 14 PSVNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV 73
Query: 214 GVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGV 393
V V I LRA L ++D F+G P++ + ++G+TGTNGKTST ++ + G
Sbjct: 74 NVPV---IIVRQSLRA-LSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGK 129
Query: 394 RSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDG 573
R+ GT+ + + D+ +P TTP + L + ++ D+ MEVSSHAL GRV G
Sbjct: 130 RTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRVHG 189
Query: 574 VHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA-------HQDVQAAVINVDDPFGLRL 732
YD+ VFTNLT+DHLDYH M+ Y AK+ LF+ H+ + AV+N DD
Sbjct: 190 CDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYF 249
Query: 733 LHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDN 912
A + G+ DADVMA+++S+ QG FDLV + L+G+FNV N
Sbjct: 250 EKVTAAHISTYGIK----NDADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNVYN 305
Query: 913 LLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLS 1092
+LA A I + L + GR + Q P DYAHTPD+L VL
Sbjct: 306 VLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFP-VIVDYAHTPDSLENVLE 364
Query: 1093 SLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILA 1272
+ G+L V GCGG+RD+ KR +MA IA AD T DNPR ED I+ D+ A
Sbjct: 365 TCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEA 424
Query: 1273 GFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRV 1452
G + +R DVVLIAGKGHE YQ++ FDD EVA R
Sbjct: 425 GVENAYYHSI-ANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGNETFDFDDAEVAARA 483
Query: 1453 LAAMSAQET 1479
+ ++ +T
Sbjct: 484 IVELNKNKT 492
>gi|5689961|emb|CAB51998.1| (AL109663) putative
UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase [Streptomyces coelicolor A3(2)]
Length = 506
Score = 279 bits (706), Expect = 4e-74
Identities = 183/480 (38%), Positives = 255/480 (53%), Gaps = 16/480 (3%)
Frame = +1
Query: 16 PLAQLLPDIPQAR---DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 186
PLA+L + A I+G+ DSR V+PGD HG F+ A GA A
Sbjct: 16 PLAELADQLGVAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 75
Query: 187 ILFEPP-APQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 363
+L +P A + + A+ V RAR+G +A +GHP + + +G+TGT+GKT+T L
Sbjct: 76 VLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYL 135
Query: 364 LAQAWHCLGVRSATC----GTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAM 531
+ G+R+A GT+ + + D+ + + TTP L A +R+ G +AVAM
Sbjct: 136 VEG-----GLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAM 190
Query: 532 EVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVD 711
EVSSHAL GRVD +D+ VFTNL+ +H+++H ME Y AKA+LF + + V+NVD
Sbjct: 191 EVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRSRLGVVNVD 250
Query: 712 DPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIG--ADHASVRSP 885
D +G RL + V S GH DAD A + + F V+G + + +SP
Sbjct: 251 DEYGRRLAKEATVPV--VTYSAEGHPDADWRADEVEVGPLDSTF-TVLGPKGERIAAKSP 307
Query: 886 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQP-XXXXDYAH 1062
L G FNV N LA L A A ++ + + GR+ R+ +GQP DYAH
Sbjct: 308 LAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV--DEGQPFFAVVDYAH 365
Query: 1063 TPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGED 1242
DA+ VL +L G+L V GCGG+RD KR M AD +T DNPR ED
Sbjct: 366 KTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSED 425
Query: 1243 GDGIVADILAGFA-----RPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVA 1407
I+A +L G A V+V DR D VL+AGKGHE+ Q++A
Sbjct: 426 PLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA 485
Query: 1408 GVRHPFDDTEVARRVL 1455
GV PFDD +V R +
Sbjct: 486 GVVRPFDDRQVLREAI 501
>gi|2984050 (AE000754) UDP-MurNac-tripeptide synthetase [Aquifex
aeolicus]
Length = 482
Score = 262 bits (663), Expect = 5e-69
Identities = 164/464 (35%), Positives = 241/464 (51%), Gaps = 5/464 (1%)
Frame = +1
Query: 64 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAIA 243
+ G+ ++S+EV+ G G FI +A RGA A++ E P V V I
Sbjct: 23 VKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVSSKVPV----II 78
Query: 244 VHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGV 423
V R LG A F G PS+ + ++G+TGTNGKT+T L+ + G ++ GT+
Sbjct: 79 VEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTGLIGTIYY 138
Query: 424 GLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTN 603
L ++++ +G TTP + H+ L + + GA+ V E+SSHALDQ RV ++ V+FTN
Sbjct: 139 RLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRFEAVLFTN 198
Query: 604 LTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLL---HGLAKGMRRVGVS 774
L++DHLDYH ME Y A+KA+LF + + +IN DD +G RLL HG + G
Sbjct: 199 LSQDHLDYHKTMEDYFASKAKLFTEYESKVKIINADDTYGKRLLKITHGEIITYGKKG-- 256
Query: 775 VCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYA 954
D+ + + +G + + L+G F NL A + YAL
Sbjct: 257 -------DLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNL--SAAIAYALWKG 307
Query: 955 LSE--IAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLIC 1128
+ I L + + GR + + DYAHTPDA+ VL + G+LI
Sbjct: 308 IEPDLIQRALKCVN-VPGRFEVV--HSDKFTVIIDYAHTPDAVENVLRTARKLSKGKLIS 364
Query: 1129 VFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKVQR 1308
VFG GG RDR KR M AE +D++ +T DNPR E+ + I+ DIL G + + V ++
Sbjct: 365 VFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEKDKVIIEA 424
Query: 1309 DRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVL 1455
DR D+V I GKGHE YQE+ GV++PF D +V + +L
Sbjct: 425 DRRKAIKKAIDMAKEGDMVAILGKGHEDYQEIKGVKYPFSDAQVVKEIL 473
>gi|3122401|sp|O06219|MURE_MYCTU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2104320|emb|CAB08669| (Z95388) murE [Mycobacterium
tuberculosis]
Length = 535
Score = 260 bits (657), Expect = 2e-68
Identities = 179/470 (38%), Positives = 240/470 (50%), Gaps = 12/470 (2%)
Frame = +1
Query: 55 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 234
D ++G+ + +++V PGD HG + DA ARGAVA+L +P GV+ G
Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA---GVAEIAG 115
Query: 235 AIAVHGL-----RARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRS 399
AV L R LG +A +GHPS+ +T++G+TGT+GKT+T L+ G +
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175
Query: 400 ATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVH 579
GT+G+ + +P+ TTP L LA + + G V MEVSSHAL GRVDG
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTR 235
Query: 580 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQD---VQAAVINVDDPFGLRLLHGLAK 750
+ V FTNL+RDHLD+H M Y AKA LF + AV+ +DD G + A
Sbjct: 236 FAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAAD 295
Query: 751 GMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAG 930
+ H A +A + Q D H +R P GR+NV N L
Sbjct: 296 AITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLP--GRYNVANCLVALA 353
Query: 931 VLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHV 1110
+L + + + L +R + GR+ ++ G DYAH P+AL VL++L +H
Sbjct: 354 ILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGF-LALVDYAHKPEALRSVLTTL-AHP 410
Query: 1111 CGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFAR-- 1284
RL VFG GG+RD GKR+ M IA AD+V VTDDNPR ED I +ILAG A
Sbjct: 411 DRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVG 470
Query: 1285 --PNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLA 1458
VV++ DR DVVLIAGKGHE Q G PFDD L
Sbjct: 471 GDAQVVEI-ADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALE 529
Query: 1459 AM 1464
A+
Sbjct: 530 AL 531
>gi|3122415|sp|Q55469|MURE_SYNY3
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|1001328|dbj|BAA10815| (D64006) UDP-MurNac-tripeptide
synthetase [Synechocystis sp.]
Length = 505
Score = 255 bits (645), Expect = 6e-67
Identities = 179/465 (38%), Positives = 232/465 (49%), Gaps = 6/465 (1%)
Frame = +1
Query: 61 VISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDG-- 234
+++GL +S PG G F A GA+A + A Q +G
Sbjct: 34 IVTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEKALQKFPPQNGEC 93
Query: 235 AIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGT 414
IAV L +A F+ HP+Q + +VGVTGTNGKT+T L+ + SA GT
Sbjct: 94 VIAVPDLVPVCAGLAAAFYQHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGT 153
Query: 415 LGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVV 594
L TTP L + LA+ G Q MEVSSHAL QGRV + V
Sbjct: 154 LYTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAV 213
Query: 595 FTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRRVGV 771
FTNLT+DHLD+HG ME+Y AAKA LF +Q AVIN DDP+G RL+ L + +V
Sbjct: 214 FTNLTQDHLDFHGTMENYFAAKALLFKESYLQGRAVINQDDPYGQRLIDRLP--LDQVYT 271
Query: 772 SVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNY 951
+ AD + L G+ V SPL+G+FN+ N+LA + L+
Sbjct: 272 YSVNDSTADFYTKDLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAA--IASGLHL 329
Query: 952 ALSEIAAVLSTLR--PIHGRMNRLGGQDGQPXXXX-DYAHTPDALGQVLSSLSSHVCGRL 1122
L A V L + GRM ++ + Q DYAHTPD+L L + + GRL
Sbjct: 330 GLDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRL 389
Query: 1123 ICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKV 1302
IC+FGCGG+RDR KR M IA AD+ VT DNPR ED + I+AD++ G + +
Sbjct: 390 ICIFGCGGDRDRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGISLDIEPWI 449
Query: 1303 QRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVL 1455
DR D VLIAGKGHE YQ + + FDD E AR L
Sbjct: 450 IGDRATAIHKAIREAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 500
>gi|5834375|gb|AAD53941.1|AF179611_25 (AF179611)
UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-
diaminopimelate ligase [Zymomonas mobilis]
Length = 485
Score = 252 bits (636), Expect = 7e-66
Identities = 173/471 (36%), Positives = 234/471 (48%), Gaps = 14/471 (2%)
Frame = +1
Query: 43 PQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS 222
P+ +D + G +DSR+V G +G FIE A A GAVAI+ P
Sbjct: 19 PKEKDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKI--- 75
Query: 223 VPDGAIAVHGLRARLG--AMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVR 396
+GA+ + RL MA RF+ M VTGTNGKTS +L Q W G +
Sbjct: 76 --EGAVHLVAENPRLAFAEMAARFYA--PFPPVMAAVTGTNGKTSVAELCRQLWTITGHK 131
Query: 397 SATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGV 576
+A+ GTLGV G TTP V+ C + L V E SSH LDQ R DG
Sbjct: 132 AASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGA 191
Query: 577 HYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQ--AAVINVDDPFGLRLL-HGLA 747
FT+ +RDHLDYHG ME Y AAK RLF + AVI DDP ++ H
Sbjct: 192 KVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQK 251
Query: 748 KGMRRVGVSVCG-----HTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDN 912
+G++ + + + +AD Q ++L+++G + +R PL+G + + N
Sbjct: 252 RGLKLIDIWKAEAIRLVNREADSQGQMITLSIKGESY---------KIRLPLIGGYQLSN 302
Query: 913 LLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLS 1092
L AG++ A + + A L+ L+P+ GR+ R DYAHTPD L +
Sbjct: 303 GLVRAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIE 362
Query: 1093 SLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILA 1272
+L H G L VFG GG+RD+GKR +M IA + AD V VTDDNPRGED I ++L
Sbjct: 363 ALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEVLV 422
Query: 1273 GFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRH----PFDDTEV 1440
G + R D+VLIAGKGHE+ Q + PFDD V
Sbjct: 423 GAPLAEEI---GGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLPFDDVTV 479
Query: 1441 ARRVL 1455
A+ +
Sbjct: 480 AKEAV 484
>gi|6093448|sp|O69557|MURE_MYCLE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|3080478|emb|CAA18673.1| (AL022602)
udp-n-acetylmuramoylalanyl-d-glutamate
--2,6-diaminopimelate ligase [Mycobacterium leprae]
Length = 530
Score = 249 bits (629), Expect = 4e-65
Identities = 186/484 (38%), Positives = 246/484 (50%), Gaps = 20/484 (4%)
Frame = +1
Query: 22 AQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEP 201
A +PDIP ++G+ + ++EV GD HG + A RGAVA+L +
Sbjct: 39 AATVPDIP------VTGVTLRAQEVLSGDLFAALAGASTHGARYAGVALERGAVAVLTDV 92
Query: 202 PA-----PQGVSVPDGAIAVHGL-RARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 363
Q SVP I +H R+ LG +A +GHPS MT+VG+TGT+GKT+T +
Sbjct: 93 AGVAELTAQASSVP---ILIHPEPRSVLGGLAAAAYGHPSNRMTVVGITGTSGKTTTTYM 149
Query: 364 LAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 543
+ G GT+G+ + +P+ TTP L LA + + G + V MEVSS
Sbjct: 150 VEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVERGVETVVMEVSS 209
Query: 544 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDV---QAAVINVDD 714
HAL GRV+G + V FTNL+RDHLD+H DME Y AKA LF + + V+ +DD
Sbjct: 210 HALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSLLRARTVVVCIDD 269
Query: 715 PFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRS---- 882
G A+ + VS G + + G+G D A V+
Sbjct: 270 DAGRAT---AARAGDAITVSALGQ---PASWRATDIRSPGVGAQEFTAVDPAGVQHRVGI 323
Query: 883 PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG-GQDGQPXXXXDYA 1059
L GR+NV N L +L + + + + +R I GR+ R+ GQD DYA
Sbjct: 324 RLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIR-IPGRLERIDCGQDF--LALVDYA 380
Query: 1060 HTPDALGQVLSSL--SSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPR 1233
H P AL VL++L H RL VFG GGERD GKR+ M IA AD+V VTDDNPR
Sbjct: 381 HKPGALHSVLTALLQPDH---RLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTDDNPR 437
Query: 1234 GEDGDGIVADILAGF----ARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQE 1401
GED I DIL G VV++ DR +DVVL+AGKGHE Q
Sbjct: 438 GEDPAAIRRDILTGTVAAGGAAQVVEI-GDRRAAIQYAVAWAGPDDVVLVAGKGHETGQR 496
Query: 1402 VAGVRHPFDDTEVARRVLAAMSAQ 1473
A PFDD R L A+
Sbjct: 497 GAAETCPFDDRVELARALQVRDAR 520
>gi|2498598|sp|Q59650|MURE_PSEAE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|1084033|pir||S54873
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) - Pseudomonas
aeruginosa (fragment) >gi|840843|emb|CAA58873| (X84053)
UDP-N-acetylmuramoylalanyl-D-glutamate--
2,6-diaminopimelate ligase [Pseudomonas aeruginosa]
Length = 325
Score = 242 bits (610), Expect = 8e-63
Identities = 146/326 (44%), Positives = 186/326 (56%), Gaps = 1/326 (0%)
Frame = +1
Query: 13 MPLAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAIL 192
M L+QL P RD++I L +DS V+P D G I DA +GA A+
Sbjct: 3 MSLSQLFPQAE--RDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVA 60
Query: 193 FEPPAPQGVSVPDGA-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLA 369
+E + D IAV GL A+L A+A RF+G PS+ + ++GVTGTNGKTS QL+A
Sbjct: 61 YEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVA 120
Query: 370 QAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHA 549
QA LG R GTLG G Y + TTP L + LA L+ GA+AVAMEVSSH
Sbjct: 121 QALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHG 180
Query: 550 LDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLR 729
LDQGRV + +D+ VFTNL+RDHLDYHG ME Y AAKA+LFA D++ VIN+DD FG R
Sbjct: 181 LDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRVINLDDDFGRR 240
Query: 730 LLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVD 909
L G + + S+ + A + + GI LV +RSPL+GRFN+
Sbjct: 241 LA-GEEQDSELITYSLT-DSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLS 298
Query: 910 NLLAVAGVLYALNYALSEIAAVLSTLR 990
NLLA G L L Y L +I L L+
Sbjct: 299 NLLAAVGALLGLGYPLGDILRTLPQLQ 325
>gi|4376699|gb|AAD18562| (AE001625) N-Acetylmuramoylalanylglutamyl DAP
Ligase [Chlamydia pneumoniae]
Length = 483
Score = 236 bits (597), Expect = 3e-61
Identities = 171/472 (36%), Positives = 229/472 (48%), Gaps = 4/472 (0%)
Frame = +1
Query: 46 QARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSV 225
+ R + + L DSR V GD G F DA A GA+AI P V
Sbjct: 17 KVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANGAIAIASSLYNPFLSVV 76
Query: 226 PDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSAT 405
+ L A L A +++ +PS + +GVTGTNGKT+ L+ S
Sbjct: 77 QIITPNLEELEAELSA---KYYEYPSSKLHTIGVTGTNGKTTVTCLIKALLDSYQKPSGL 133
Query: 406 CGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYD 585
GT+ L + V+ GFTTP L + LA + + AV MEVSS L GRV ++D
Sbjct: 134 LGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVVMEVSSIGLASGRVAYTNFD 193
Query: 586 VVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRR 762
V TN+T DHLD+HG E Y AAKA+LF+ VIN D P+ + + +
Sbjct: 194 TAVLTNITLDHLDFHGTFETYVAAKAKLFSLVPPSGMVVINTDSPYASQCIESAKAPVIT 253
Query: 763 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYA 942
G+ + AD A + L+ G + LV G + S +G++NV NLLA ++A
Sbjct: 254 YGI----ESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSFIGKYNVYNLLAAISTVHA 309
Query: 943 -LNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHV--C 1113
L L ++ + +P GR++ + G DYAHTPDAL VL+ L +
Sbjct: 310 SLRCDLEDLLEKIGLCQPPPGRLDPV--LMGPCPVYIDYAHTPDALDNVLTGLHELLPEG 367
Query: 1114 GRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNV 1293
GRLI VFGCGG+RDR KR MA + E V VT DNPR E + IV +I GF N
Sbjct: 368 GRLIVVFGCGGDRDRSKRKLMAQVVERYGFAV-VTSDNPRSEPPEDIVNEICDGFYSKNY 426
Query: 1294 VKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLAA 1461
++ DR D+VLIAGKGHE YQ FDD + VLA+
Sbjct: 427 F-IEIDRKQAITYALSIASDRDIVLIAGKGHEAYQIFKHQTVAFDDKQTVCEVLAS 481
>gi|3328681|gb|AAC67862.1| (AE001299)
UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
trachomatis]
Length = 483
Score = 233 bits (589), Expect = 2e-60
Identities = 172/484 (35%), Positives = 245/484 (50%), Gaps = 12/484 (2%)
Frame = +1
Query: 13 MPLAQLLPDIP-----QARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARG 177
M L QLL +IP + + + L DSR V GD +G + A A G
Sbjct: 1 MHLDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANG 60
Query: 178 AVAIL---FEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKT 348
A+A+L + P + + IA+ ++A RF+ +PS+ + ++G+TGTNGKT
Sbjct: 61 AIAVLSSLYNPFLSVVQIIAEDPIALEA------SLAARFYNNPSRHLDVIGITGTNGKT 114
Query: 349 STVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVA 528
+ L+ + G R+ GT+ L + + FTTP + L + A++ + A
Sbjct: 115 TVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAV 174
Query: 529 MEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVIN 705
MEVSS + GRV + V TN+T DHLD+HG +E Y AAK + FA + AV+N
Sbjct: 175 MEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVN 234
Query: 706 VDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSP 885
+D + L+ G + VS H +AD A L L G +D+ +
Sbjct: 235 LDCEYAPSFLN----GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETS 290
Query: 886 LMGRFNVDNLLAVAGVLYA-LNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAH 1062
L+G NV N+LA V++ L +++ + L GR++ + G DYAH
Sbjct: 291 LIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPI--LLGPFPVYIDYAH 348
Query: 1063 TPDALGQVLSSLSSHV--CGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRG 1236
TPDAL V L + GRLI VFGCGG+RDR KR MA ++E + FVT DNPR
Sbjct: 349 TPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSE-HYGFSFVTSDNPRT 407
Query: 1237 EDGDGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVR 1416
ED D I+ADI GF+ + V V+ DR +D+VL+AGKGHE YQ
Sbjct: 408 EDPDQIIADICKGFSTDHYV-VESDRKLAIEKAISMASDKDIVLVAGKGHEGYQIFKHQT 466
Query: 1417 HPFDDTEVARRVLAAM 1464
FDD EV LAA+
Sbjct: 467 IVFDDREVVCEALAAL 482
>gi|6457968|gb|AAF09877.1|AE001890_9 (AE001890)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Deinococcus radiodurans]
Length = 490
Score = 226 bits (570), Expect = 4e-58
Identities = 164/475 (34%), Positives = 236/475 (49%), Gaps = 7/475 (1%)
Frame = +1
Query: 34 PDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ 213
P+ D ++G+ ++ VQPG G F+E A A GAVA+L E A
Sbjct: 15 PETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFMEQAQAAGAVAVLGEGLA-D 73
Query: 214 GVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGV 393
G + P + V RA L A GHPS+ + +VGVTGT+GKT+T L G+
Sbjct: 74 GQTSPLPYLTVPNARAALADAAAALAGHPSRELKVVGVTGTDGKTTTSWLTRHLLRSAGL 133
Query: 394 RSATCGTLGVGLYDQVV---PTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGR 564
+ T+G L D + P FTTP Q+ L ++ GAQA +E SSHAL R
Sbjct: 134 ATGLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTLREMVAAGAQATVLEASSHALSLDR 193
Query: 565 VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGL 744
V GV +DV V+T+L+ +HLD+HG +++Y A K +L + + AV+NVDDP+ + L G+
Sbjct: 194 VRGVDWDVAVWTHLSSEHLDFHGTLDNYFADKRKLV--ERARFAVLNVDDPWTAQ-LRGI 250
Query: 745 AKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAV 924
A G + AD AQ + G+ F +V A P++GRFNV N LA
Sbjct: 251 APGETTYSAE---NQHADWRAQDIEERHSGLHFRVVSPAGDFQAELPMIGRFNVANALAG 307
Query: 925 AGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSS 1104
+ L ++ A L++ R + GRM + G P D+AHTP +L + L +L +
Sbjct: 308 MAAAHHLGATALQLQAGLASFRGVPGRMELVPGGATSPRVIVDFAHTPPSLEKALGTLRA 367
Query: 1105 HVCGRLICVFG-CGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGF- 1278
G L V G GG RD KR+ + +A AD +T+++ R I+ ++ G
Sbjct: 368 TTAGHLWVVIGSAGGPRDPYKRAPLGEVATRLADHAILTEEDCRDTPLQDILNEMERGAR 427
Query: 1279 --ARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRV 1452
R N V + DR D VL+AGKG E E A P+++ AR V
Sbjct: 428 EEGRSNFVSI-GDRREAIRYAVTHAQPGDTVLLAGKGPEDTLERATETLPWNEVAEARAV 486
Query: 1453 LA 1458
LA
Sbjct: 487 LA 488
>gi|4980735|gb|AAD35328.1|AE001707_15 (AE001707)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Thermotoga maritima]
Length = 490
Score = 222 bits (560), Expect = 6e-57
Identities = 159/479 (33%), Positives = 236/479 (49%), Gaps = 10/479 (2%)
Frame = +1
Query: 19 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 198
L L+ ++ D+ I+G+ S +V+ GD I + +GAVA++ E
Sbjct: 10 LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVE 69
Query: 199 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAW 378
+ + + I V R +A F P + + GVTGTNGKT+T ++
Sbjct: 70 ----REIDLDFPYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHML 125
Query: 379 HCLGVRSATCGT-----LGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 543
LG R + T LG YD + TTP + + + + R+ G + A+EVSS
Sbjct: 126 TSLGERGSVLTTAVKRILGNSYYDDI-----TTPDAITILSAMKENREGGGKFFALEVSS 180
Query: 544 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF-AHQDVQAAVINVDDPF 720
HAL Q RV+GV +DV +FTN++RDHLD+HG E+Y AK LF +D AV+N
Sbjct: 181 HALVQQRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN----- 235
Query: 721 GLRLLHGLAKGMRRVGVSVCGHT--DADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMG 894
LA R + T +AD ++ ++ +G F L V + +G
Sbjct: 236 -----ESLADAFNRKSRKITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRAIG 290
Query: 895 RFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRL-GGQDGQPXXXXDYAHTPD 1071
FN N A L+ L Y ++A+ L T + GR + G + D+AH+PD
Sbjct: 291 DFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPD 350
Query: 1072 ALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDG 1251
AL ++L ++ GR+I VFG GG DRGKR M+ +A ADVV +T D+PRGED +
Sbjct: 351 ALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQ 410
Query: 1252 IVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRH-PFD 1428
I+ D++ G + V DR D V+IAG+GHERYQ + + PF
Sbjct: 411 IMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQ 470
Query: 1429 DTEVARRVL 1455
D EV ++
Sbjct: 471 DREVVEEII 479
>gi|6093449|sp|O05954|MURE_RICPR
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2073485|emb|CAA72473| (Y11783) UDP-MurNAc-tripeptide
synthetase [Rickettsia prowazekii]
>gi|3861141|emb|CAA15041| (AJ235272)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--
2,6-DIAMINOPIMELATE LIGASE (murE) [Rickettsia prowazekii]
Length = 480
Score = 221 bits (557), Expect = 1e-56
Identities = 155/468 (33%), Positives = 234/468 (49%), Gaps = 12/468 (2%)
Frame = +1
Query: 64 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAIA 243
I GL +S+ V+ + G FI DA GAV ++ E + D I
Sbjct: 14 IKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAI---DKVIY 70
Query: 244 VHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGV 423
V + L + F+ P + ++ VTGTNGK+S V +AQA+ L ++A GT+G+
Sbjct: 71 VEDVHKALYEAIEIFY--PKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKAAFIGTIGL 128
Query: 424 GLYDQV-----VPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDV 588
++ VP+ TT L + L ++ + +A E SSH L+QGR+ ++
Sbjct: 129 EIFGSNNIINDVPS-LTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNI 187
Query: 589 VVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA--AVINVDDP---FGLRLLHGLAKG 753
V FT+ ++DHLDYH E+Y AK +LF + + A++N D F LH
Sbjct: 188 VSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLHNNNVK 247
Query: 754 MRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGV 933
VG D+ ++ +L G D + ++ + ++G F NLL A
Sbjct: 248 FITVGKK------GDLQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALT 301
Query: 934 LYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVC 1113
LY + EI L+ ++PI GRM R+ G + DY+HTPD+L + L L +
Sbjct: 302 LYYTGFKFDEIIEALAKVKPIKGRMERIDGTN----IFVDYSHTPDSLEKALIELKNIKL 357
Query: 1114 --GRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARP 1287
+L +FGCGG+RD+ KR+ M IA AD V +TDDNPR ED I A+I+ G
Sbjct: 358 HGSKLSVIFGCGGDRDKTKRALMGQIAAKLADNVIITDDNPRFEDPKLIRAEIIRGIGTA 417
Query: 1288 NVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLAAMS 1467
++ R +D++LIAGKGHE YQ + + PFDD+EV R+ L +S
Sbjct: 418 TYTEI-ASRAEAIKYGINNLKQDDILLIAGKGHETYQIIGDKKLPFDDSEVVRKYLFEIS 476
>gi|6456164|gb|AAF09152.1|AC011622_9 (AC011622) putative
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Arabidopsis thaliana]
Length = 767
Score = 203 bits (511), Expect = 3e-51
Identities = 150/467 (32%), Positives = 231/467 (49%), Gaps = 32/467 (6%)
Frame = +1
Query: 55 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPD- 231
DV I+G+ DSR V GD F+ +A RGAVA++ A + + + D
Sbjct: 262 DVEITGIQHDSRGVSAGDLFVCCLGSEN----FLSEADKRGAVAVV----ASKEIDIEDT 313
Query: 232 ----GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRS 399
+ V A L A+A F+ HPS+ M+++GVTGT+GKT+T L+ + +GVR+
Sbjct: 314 LGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRT 373
Query: 400 ATCGTLGVGLYDQV---VPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVD 570
T+ ++ P P + + +A++ G +++ ME S L G+ D
Sbjct: 374 GMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELALGKCD 433
Query: 571 GVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ---DVQAAVINVDDPFGLRLLHG 741
V +D+ VFTNLTR++ D+ G E Y A+A+LF+ + V+N+DDP +
Sbjct: 434 EVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAAFFVQ- 492
Query: 742 LAKGMRRVGVSVCG--HTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNL 915
+G V V +T ADV L+L + + S L+GR N+ N+
Sbjct: 493 --QGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIYNI 550
Query: 916 LAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSS 1095
LA V A+ L +I + + + GR + + D+A+TPD L ++L S
Sbjct: 551 LAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAF-GVIVDHANTPDGLSRLLDS 609
Query: 1096 LSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAG 1275
+ R+I V GC GE +RGKR M IA +DV +T DNPR ED I+ D+L+G
Sbjct: 610 IRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLSG 669
Query: 1276 -------------------FARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQ 1398
A + + + R D+V++AGKGHE YQ
Sbjct: 670 IGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQ 729
Query: 1399 EVAGVRHPFDDTEVARRVL 1455
+ +DD E R L
Sbjct: 730 LEGEKKEFYDDREECREAL 748
>gi|3256223|emb|CAA74740| (Y14370) UDP-N-acetylmuramyl-tripeptide
synthetase [Staphylococcus aureus]
Length = 492
Score = 199 bits (502), Expect = 4e-50
Identities = 139/449 (30%), Positives = 215/449 (46%), Gaps = 8/449 (1%)
Frame = +1
Query: 64 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGA--VAILFEPPAPQGVSVPDGA 237
I + DSR + G F ++ +G V + E P V+
Sbjct: 22 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVT----Q 77
Query: 238 IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTL 417
+ V +A + +PS + GVTGTNGKTS ++ L SA GT
Sbjct: 78 VVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTN 137
Query: 418 GVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVF 597
G + + TTP + L + + + D GA+++ +EVSSH L GR+ V +DV +F
Sbjct: 138 GFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRSVEFDVAIF 197
Query: 598 TNLTRDHLDYHGDMEHYGAAKARLFAH--QDV---QAAVINVDDPFGLRLLHGLAKGMRR 762
+NLT+DHLD+HG ME YG AK+ LF+ +D+ + V+N DD F L +
Sbjct: 198 SNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTPYEVFS 257
Query: 763 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYA 942
G+ +A MA+++ +LQG+ FD V V+SP +G+FN+ N++A +++
Sbjct: 258 YGID----EEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAMIAVWS 313
Query: 943 LNYALSEIAAVLSTLRPIHGRMNRLGGQDGQP-XXXXDYAHTPDALGQVLSSLSSHVCGR 1119
+L I + L P+ GR+ L P DYAHT D + +++ ++ V +
Sbjct: 314 KGTSLETIIKAVENLEPVEGRLEVL--DPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQK 371
Query: 1120 LICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVK 1299
LI + G GERD K +M +A AD V T DNP +D + A++ G N ++
Sbjct: 372 LIFLVGMAGERDLTKTPEMGRVA-CRADYVIFTPDNPANDDPKMLTAELAKGATHQNYIE 430
Query: 1300 VQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAG 1410
DR D V++A KG E YQ + G
Sbjct: 431 FD-DRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPG 466
>gi|6093450|sp|O83903|MURE_TREPA
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|3323248 (AE001261)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (murE) [Treponema pallidum]
Length = 540
Score = 195 bits (491), Expect = 7e-49
Identities = 159/473 (33%), Positives = 237/473 (49%), Gaps = 51/473 (10%)
Frame = +1
Query: 64 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGV------SV 225
+S + DSR V+ G HG +I A GA AI+ + P V V
Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLDTYVVGVYYARV 85
Query: 226 PDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSAT 405
PD R L + A F+ P++A+T++GVTGT GK+STV +AQ G R
Sbjct: 86 PDA-------RCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGF 138
Query: 406 CGTLGVGLYDQVVPTGF--TTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQ--GRVDG 573
T+ L D ++P TTP L + + LA++R+ + +E SSH L R+
Sbjct: 139 ISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQD 198
Query: 574 VHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF----AHQDVQAA-------VINVDDPF 720
V +DV V N+ +HL++HG E Y KA +F AH ++ V+ +D
Sbjct: 199 VAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDAS 258
Query: 721 GLRLLHGLAKG-----------------MRRVGVSVCGHTDADVMAQHLSLN-----LQG 834
+ K + R+ ++ ++Q L L +Q
Sbjct: 259 AVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTVQE 318
Query: 835 IGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYAL-NYALSEIAAVLSTLRPIHGRMN 1011
GA SV PL G FN N+ A VL+ L +L+ A + ++PI GRM
Sbjct: 319 PAQPAQDGAHDVSV--PLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQ 376
Query: 1012 RLG-GQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGR---LICVFGCGGERDRGKRSQMA 1179
R+ GQD + DYAHTP + ++L L++ V R ++ +FG GERD KR+
Sbjct: 377 RVDMGQDFE--VLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQG 434
Query: 1180 VIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVK---VQRDRXXXXXXXXXXXX 1350
IA A V+ +TD++PRGED GI+ I AG + K + DR
Sbjct: 435 AIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLAR 494
Query: 1351 XEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLAAMSAQETV 1482
+D+VL+ GKGHE A P+D+ AR +L A + +T+
Sbjct: 495 AQDLVLLLGKGHEHSIIYAHTVQPYDEERTARELLRASLSSDTL 538
>gi|4156007 (AE001561) UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE
[Helicobacter pylori J99]
Length = 447
Score = 178 bits (448), Expect = 8e-44
Identities = 128/377 (33%), Positives = 192/377 (49%), Gaps = 11/377 (2%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQ-VVPTGFTTPLVLQLHQCL 492
+VG+TGTNGKT+T L+ L ++A GT G + D+ + G TTP +L+L+ L
Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFIDDKHIKEKGLTTPTLLELYSDL 128
Query: 493 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF 672
+ + MEVSSHA+ Q R+ G+ + + + TN+T DHLD+H ++E+Y AK F
Sbjct: 129 EEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKNSFF 188
Query: 673 AHQDVQAAVINVDD------PFGLRLLHGLAKGMRRV-GVSVCGHTDADVMAQH--LSLN 825
+ ++ VIN D+ P R K V S+ A + QH N
Sbjct: 189 KDEGLK--VINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLRDPN 246
Query: 826 LQGIGFDLVIGADHASVRSPLMGRFNVDNLLA-VAGVLYALNYALSEIAAVLSTLRPIHG 1002
L+ + A + SPL+GR+N+ N+LA V GV L IA +L + G
Sbjct: 247 LK----------ETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKG 296
Query: 1003 RMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAV 1182
R+ + +P D+AHT D + QV S + ++ +FG GG+RD+ KR +M
Sbjct: 297 RLEIV---HSKPLVVVDFAHTTDGMQQVFESFKNQ---KITALFGAGGDRDKTKRPKMGA 350
Query: 1183 IAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDV 1362
IA A + +T DNPR E+ + I+ DIL G + V V++DR ++V
Sbjct: 351 IASCYAHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEV 410
Query: 1363 VLIAGKGHERYQEVAGVRHPFDDTEVAR 1446
+LI GKG E Q F D EV +
Sbjct: 411 LLILGKGDENIQIFKDKTIFFSDQEVVK 438
>gi|2314673|gb|AAD08535.1| (AE000648) UDP-MurNac-tripeptide synthetase
(murE) [Helicobacter pylori 26695]
Length = 447
Score = 175 bits (439), Expect = 9e-43
Identities = 127/377 (33%), Positives = 190/377 (49%), Gaps = 16/377 (4%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQ-VVPTGFTTPLVLQLHQCL 492
+VG+TGTNGKT+T L+ L ++A GT G + ++ + G TTP +L+L+ L
Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINNERIKEKGLTTPTLLELYSDL 128
Query: 493 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF 672
+ + MEVSSHA+ Q R+ G+ + + + TN+T DHLD+H +E+Y AK F
Sbjct: 129 EEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQSIENYRDAKNSFF 188
Query: 673 AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 852
+ ++ VIN D+ L V HT A HL N+Q +
Sbjct: 189 KDEGLK--VINRDETNALFN-------------PVNAHTYALDKKAHL--NVQAFSLNPS 231
Query: 853 IGA--------------DHASVRSPLMGRFNVDNLLA-VAGVLYALNYALSEIAAVLSTL 987
I A + A + SPL+GR+N+ N+LA V GV L I +L
Sbjct: 232 ISASLCYQQDLRDPNFKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETIVPLLENF 291
Query: 988 RPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKR 1167
+ GR+ + +P D+AHT D + QV S + ++ +FG GG+RD+ KR
Sbjct: 292 YGVKGRLEIV---HSKPLVVVDFAHTIDGMQQVFESFKNQ---KITALFGAGGDRDKTKR 345
Query: 1168 SQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKVQRDRXXXXXXXXXXX 1347
+M IA A + +T DNPR E+ + I+ DIL G + V V++DR
Sbjct: 346 PEMGAIASYYAHKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAILNALENL 405
Query: 1348 XXEDVVLIAGKGHERYQEVAGVRHPFDDTEVAR 1446
++V+LI GKG E Q F D EV +
Sbjct: 406 KDDEVLLILGKGDENIQIFKDKTIFFSDQEVVK 438
>gi|3914073|sp|O51219|MURE_BORBU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2688092 (AE001130)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (murE) [Borrelia burgdorferi]
Length = 508
Score = 155 bits (387), Expect = 1e-36
Identities = 137/483 (28%), Positives = 222/483 (45%), Gaps = 23/483 (4%)
Frame = +1
Query: 28 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAIL----- 192
L+ + + D+ ISG+ S+ V P G FIE A +G+ ++
Sbjct: 16 LIKCVKGSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV 75
Query: 193 -FEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLA 369
F P + V D +R + ++ F+ PS+ + ++GVTGT+GK+S +
Sbjct: 76 DFYSPNVTYIKVDD-----FNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIY 130
Query: 370 QAWHCLGVRSATCGTL----GVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 537
+ GV+ T+ G G + P +TP ++H L+ + AQ +E
Sbjct: 131 LLFKKKGVKVGFISTVFFDDGSGSLIKN-PYRQSTPESTEIHSFLSTMVKNEAQYAILES 189
Query: 538 SSHALD--QGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF--AHQDVQAAVIN 705
+SH LD R+ V+Y VVFTN+ +HL++HG +++Y K LF D VIN
Sbjct: 190 TSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVIN 249
Query: 706 VDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSP 885
+DD + + + K S + AD + F+
Sbjct: 250 LDDLYSSDFKNAVKKSFTYSLKS----SKADFFVSFIDEKTDSTRFEFYHKGVKYLANVS 305
Query: 886 LMGRFNVDNLLA-VAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG-GQDGQPXXXXDYA 1059
L+G FNV+N++A + V LN + +I L+ ++ + GRM+ + GQ+ DYA
Sbjct: 306 LLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFS--VIIDYA 363
Query: 1060 HTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGE 1239
HTP A ++ RLI VFG GERD KR IA+ +D++ + D++PRGE
Sbjct: 364 HTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGE 423
Query: 1240 DGDGIVADILAGFARPNVVKVQR-------DRXXXXXXXXXXXXXEDVVLIAGKGHERYQ 1398
+ I+ DI G V KV+ DR D+V+ GKGHE
Sbjct: 424 NSMCIIKDIAKGI----VNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSI 479
Query: 1399 EVAGVRHPFDDTEVARRVLAAMSAQE 1476
+++ EV + + ++ E
Sbjct: 480 IYKNREVFWNEQEVVKNAILSLEKSE 505
>gi|6093446|sp|O85298|MURE_BUCAP
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|3435169|gb|AAC32338| (AF060492) meso-diaminopimelate
adding enzyme [Buchnera aphidicola]
Length = 292
Score = 128 bits (318), Expect = 1e-28
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 7/240 (2%)
Frame = +1
Query: 28 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 207
L P I S L +DSR++ D G FI +A + VAIL E
Sbjct: 10 LFPWIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKE 69
Query: 208 PQGV-------SVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 366
+ ++P ++ L ++ +A R + P++ + ++GVTGTNGKT+ QL+
Sbjct: 70 KKKHGEINYINNIP--ILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLI 127
Query: 367 AQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSH 546
Q LG + AT GTLG G Y+ + T TT + + L + V MEVSSH
Sbjct: 128 NQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSH 187
Query: 547 ALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGL 726
L Q RV + + + +FTNLT+DHLDYH +M+ Y +AK F+ ++ ++N +D +
Sbjct: 188 GLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQHKIKKIILNANDKYAK 247
Query: 727 RLLHGLA 747
+ L L+
Sbjct: 248 KWLRKLS 254
>gi|6093447|sp|O69290|MURE_CAMJE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2959999|emb|CAA76495| (Y16882)
UDP-N-acetylmuramoylalanyl-D-glutamate--
2,6-diaminopimelate ligase [Campylobacter jejuni]
Length = 350
Score = 111 bits (274), Expect = 2e-23
Identities = 86/287 (29%), Positives = 138/287 (47%), Gaps = 3/287 (1%)
Frame = +1
Query: 304 QAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYD-QVVPTGFTTPLVLQL 480
+ + ++G+TGTNGKT+T + LG + CGT G + D Q+ TT +L+
Sbjct: 81 EKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKT 140
Query: 481 HQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 660
+ L + M VSSHAL R +G+++ +FTN+T+DHLD+ G +Y AK
Sbjct: 141 LEYLLIATPKKCDFFIMGVSSHALVPNRSEGLNFAAKIFTNITQDHLDFRGTFGNYKEAK 200
Query: 661 ARLFAHQDVQAAVINVDD-PFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGI 837
F + ++ IN D + + G+ + + A L +GI
Sbjct: 201 ELFFTDESLK--FINKDALAIKFNVRNAFTYGIENPAL-------YQIKAYSLE---EGI 248
Query: 838 GFDLVIGADHASVRSPLMGRFNVDNLL-AVAGVLYALNYALSEIAAVLSTLRPIHGRMNR 1014
+ + SPL+G FN+ NLL A A V + L ++ +S + GR+ +
Sbjct: 249 STIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQ 308
Query: 1015 LGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGK 1164
+ D+AHTPD + +VL +L + +LI VFG GG+RD+ K
Sbjct: 309 VA-----KGVIVDFAHTPDGIEKVLDTLKNK---KLIVVFGAGGDRDKTK 350
>gi|5689960|emb|CAB51997.1| (AL109663) putative
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D -alanyl-alanyl ligase [Streptomyces
coelicolor A3(2)]
Length = 471
Score = 84.3 bits (205), Expect = 2e-15
Identities = 106/361 (29%), Positives = 148/361 (40%), Gaps = 9/361 (2%)
Frame = +1
Query: 37 DIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQG 216
DIP A V +V DSRE PG G F GAVA+L P
Sbjct: 19 DIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAARVVEAGAVAVLGSRP---- 74
Query: 217 VSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVR 396
V VP AI V ++A LGA+A H T+V +TG+ GKTST L+AQ
Sbjct: 75 VGVP--AIVVDDVQAALGALAR--HVVRRLGTTLVALTGSAGKTSTKDLIAQVLRRKAPT 130
Query: 397 SATCGTLG--VGL-YDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRV 567
T G++ VGL + T T LVL++ GA+ + L ++
Sbjct: 131 VFTPGSMNNEVGLPLTALTATDETKFLVLEM----------GARGIGHIRYLTELTPPKI 180
Query: 568 DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF----AHQDVQAAVINVDDPFGLRLL 735
V N+ H+ G E AK L ++ AA++N DDP L+
Sbjct: 181 GAV-------LNVGSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDP----LV 229
Query: 736 HGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQG-IGFDLVIGADHASVRSPLMGRFNVDN 912
+A + + +ADV A+++ L G F L + + V L G +V N
Sbjct: 230 RAMASRTKAKVILFGESGEADVRAENVRLTDTGQPSFSLHTPSGASDVTMRLYGEHHVSN 289
Query: 913 LLAVAGVLYALNYALSEIAAVLSTLRPI-HGRMNRLGGQDGQPXXXXDYAHTPDALGQVL 1089
LA A V + L + EIA LS + RM DG Y P++ L
Sbjct: 290 ALAAAAVAHELGMSADEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESTKAAL 349
Query: 1090 SSLSSHVCGR 1119
+L + GR
Sbjct: 350 RALVAMGKGR 359
>gi|5689958|emb|CAB51995.1| (AL109663) putative
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Streptomyces coelicolor A3(2)]
Length = 471
Score = 76.1 bits (184), Expect = 7e-13
Identities = 74/238 (31%), Positives = 109/238 (45%), Gaps = 9/238 (3%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
+ VTGTNGKT+TVQ+LA G+R+A G +GV L D V TG
Sbjct: 118 LAVTGTNGKTTTVQMLASILKAAGLRTAAVGNIGVSLLDAV--TG--------------- 160
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH 678
++ +A+E+SS+ L H V+ NL DHLD+HG ME Y A K R++
Sbjct: 161 --EQEYDVLAVELSSYQLHWAPSLRAHSAAVL--NLAPDHLDWHGSMEAYAADKGRIYEG 216
Query: 679 QDVQAAVINVDDPFGLRLLHG--LAKGMRRVGV-------SVCGHTDADVMAQHLSLNLQ 831
V A V NV D L+ + +G R +G S G + ++ + + Q
Sbjct: 217 NHV-ACVYNVADKATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVEGLLVDRAFVEDRQ 275
Query: 832 GIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMN 1011
+L A+ + V P N+ N LA AG+ A + + + L P R+
Sbjct: 276 KNAQEL---AEVSDVNPP--APHNIANALAAAGLARAFGVSAAAVRDGLRAFTPDAHRIA 330
Query: 1012 RLGGQDG 1032
+ DG
Sbjct: 331 HVADVDG 337
>gi|2621604 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase
related protein [Methanobacterium thermoautotrophicum]
Length = 682
Score = 74.9 bits (181), Expect = 2e-12
Identities = 110/362 (30%), Positives = 153/362 (41%), Gaps = 51/362 (14%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
+VGVTGTNGKT+T +L G+R L + ++VP L +L +A
Sbjct: 298 VVGVTGTNGKTTTTGMLKSIMRVAGMRVPE-HHLNIQGNTELVPA-----LQARLPGDVA 351
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 675
+ + G E+ S A+ G V V TN++RDHL Y K +
Sbjct: 352 VV-EIGTFGRRGEIRSSAMLSG------VSVGVITNISRDHLSAGRRFSDYIECKGEMV- 403
Query: 676 HQDVQAAVINVDDPFGLRLLHGLAKGM--------------------------------R 759
+ + V+N DDP L GL + R
Sbjct: 404 -EVAEDLVLNADDPIVASLADGLPRERVVFYGIQSSESGGVVPEGRECPKCGKPLRYTRR 462
Query: 760 RVG-----VSVCGHT--DADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLL 918
+G +CG+ DVMA S GF LVIG + VR G FNV N L
Sbjct: 463 TIGHLGDYQCICGYLRPQPDVMAIEASPG----GFKLVIGQEMREVRLATPGIFNVYNAL 518
Query: 919 AVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSL 1098
A A + + + +I L + + + GR L P DYAH P + V+ L
Sbjct: 519 AAAATAWTMGLEIDDIVRGLESFKGVPGRFQEL---SESPRIILDYAHNPAGVRAVMQDL 575
Query: 1099 SSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPR------GEDGDGIVA 1260
GRLI V E ++A I + +ADVV R GE I +
Sbjct: 576 RGK--GRLIVVNTVASESGIDGDREIAAILK-DADVVIPASYAARRASDILGERAVHIGS 632
Query: 1261 DIL------AGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQE 1401
+ G +R V + R +D VLI G+G RY E
Sbjct: 633 SRMRAGGGTLGASREQVAEAVR-------KALELAGPDDTVLIIGEGGYRYAE 678
>gi|3122417|sp|O33804|MURF_STRTO PROBABLE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME) >gi|2228594 (U82965)
MurX [Streptomyces toyocaensis]
Length = 443
Score = 68.3 bits (164), Expect = 2e-10
Identities = 126/449 (28%), Positives = 168/449 (37%), Gaps = 12/449 (2%)
Frame = +1
Query: 61 VISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAI 240
V + V+DSR+ +PG G + E A GAVA+L P S+P +
Sbjct: 24 VTAPAVLDSRQAEPGGFCRFAGEHAD-GHDYAERAGRAGAVAVLGSRPT----SLP--TV 76
Query: 241 AVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLG 420
V +R L +A +T+VGVTG+ GKT T LLA G AT G+L
Sbjct: 77 VVEDVRTALQTLAAHVVARLRDGLTVVGVTGSQGKTGTKDLLAAVLSAHGPTVATTGSLN 136
Query: 421 VGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGA-QAVAMEVSS-HALDQGRVDG-VHYDVV 591
+L L LR + A + + +E+ + H D + G V D+
Sbjct: 137 -----------------NELGVPLTMLRAQAATRFLVLEMGARHEGDIAELTGLVAPDIA 179
Query: 592 VFTNLTRDHLDYHGDMEHYGAAKARLF-AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVG 768
V N+ H+ G AK L AV+N DDP + + L G
Sbjct: 180 VVLNVGVAHVGEFGSRAAIARAKGELVQGLVPGGTAVLNADDP-RVASMSVLTDG----P 234
Query: 769 VSVCGHTD-ADVMAQHLSLNLQGIG---FDLVIGADHASVRSPLMGRFNVDNLLAVAGVL 936
V G TD ADV Q L + G+G L A + PL+G N A A
Sbjct: 235 VLTFGRTDPADV--QVLDVVFDGLGRPSCTLRTVDTSARLALPLVGAHQALNASAAAAAA 292
Query: 937 YALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCG 1116
A L L+T R G N G D L +LS+ G
Sbjct: 293 LAAGVPLDLATTALTTARCRRGGWNCATSLRGDVLNDSTTPTRTDP--AALDALSAIEGG 350
Query: 1117 RLICVFGCG---GERDRGKRSQMAVIAESNADVVFVTDDNPRG-EDGDGIVADILAGFAR 1284
R I V G G+ + + A + ADVV + R DG G A + AG
Sbjct: 351 RRIAVLGEMLELGDGSEAEHRAVGAYAAARADVVVAVGEAARPFADGAGERAVVFAG--N 408
Query: 1285 PNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVA 1407
V RD DVVL+ R EVA
Sbjct: 409 DAAVDWLRDHLAAG----------DVVLVKASRGARLDEVA 439
>gi|6225735|sp|Q9ZDC2|MURD_RICPR
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|3860967|emb|CAA14867|
(AJ235271) UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE
LIGASE (murD) [Rickettsia prowazekii]
Length = 445
Score = 66.7 bits (160), Expect = 4e-10
Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 3/240 (1%)
Frame = +1
Query: 301 SQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQL 480
S+ + + +TGTNGK++T L++ + G+ G +GV
Sbjct: 101 SKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQ--------------- 145
Query: 481 HQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 660
A+ +EG +E+SS LD V V V N+T DHLD + DM Y AAK
Sbjct: 146 ----AKASNEG---YVLELSSFQLDL--VKSFTVKVAVLLNITPDHLDRYQDMNDYIAAK 196
Query: 661 ARLFAHQDVQA-AVINVDDPFGLRLLHGLAK--GMRRVGVSVCGHTDADVMAQHLSLNLQ 831
A++F D + AVIN+D+ + ++ L K ++ + SV + ++
Sbjct: 197 AKIFDRMDKDSYAVINIDNDYCRKIFVLLQKDQSIKLIPFSVTKILKNGISIVDDKIHDN 256
Query: 832 GIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMN 1011
+ + L + + L G N +N+ A V + +I +S+ + +H RM
Sbjct: 257 DLTYKLPLNKN-------LQGLHNCENIAASYAVAKIIGLESKKILESISSFQSLHHRMQ 309
Query: 1012 RLG 1020
+G
Sbjct: 310 YIG 312
>gi|6460318|gb|AAF12038.1|AE002079_3 (AE002079)
UDP-N-acetylmuramoylalanine--D-glutamiate ligase
[Deinococcus radiodurans]
Length = 457
Score = 66.0 bits (158), Expect = 8e-10
Identities = 67/209 (32%), Positives = 89/209 (42%), Gaps = 16/209 (7%)
Frame = +1
Query: 310 MTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQC 489
+ MVG+TGT GK ST L+AQ G+R+ G + L D V
Sbjct: 119 LPMVGITGTAGKGSTTVLIAQLLRACGLRAREGGNIDPPLLDVV---------------- 162
Query: 490 LAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
+ A+ +E+SS L+ RV G+ V V TNL DHLD HG +E Y AAK +
Sbjct: 163 ------DDAEVAVVELSSFQLE--RVPGLRLPVAVITNLGVDHLDRHGSVETYHAAKLNI 214
Query: 670 FAHQDVQAAVINVDD-------------PFGLRLLHG---LAKGMRRVGVSVCGHTDADV 801
A Q ++ D P L L G L GV A +
Sbjct: 215 TAGQQSGDVLVRPADLPVPTRAQTVTFTPERLCLRDGQEVLPVADLPPGVHPANAAAALL 274
Query: 802 MAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVL 936
A+ L +L G D + AD P+ GRF L G +
Sbjct: 275 AAEALLRHL-GRAVDPAVLADALRAAQPVKGRFETVGQLGEVGFI 318
>gi|2621606 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase
related protein [Methanobacterium thermoautotrophicum]
Length = 404
Score = 65.6 bits (157), Expect = 1e-09
Identities = 61/204 (29%), Positives = 93/204 (44%), Gaps = 6/204 (2%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
V VTGTNGKT+T ++A G R G G G G+T + + +
Sbjct: 93 VAVTGTNGKTTTASMIAHVLESSGWRVLLGGNAGGGF------DGYT--------EVILR 138
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH 678
+E + +EV L+ + D+ V TNL DHL++HG ME+Y + A
Sbjct: 139 AAEEEFDYIVVEVCDMTLEFAS-ECFDIDLAVITNLGEDHLNFHGSMENYRESVASFL-- 195
Query: 679 QDVQAAVINVDDPFGLRLLHGLAKGMRRV---GVSVCGHTDADVMAQHLSLNLQGIGFDL 849
+ +A VI+ D+P L G + M G V + A + L+ +G
Sbjct: 196 -EGRAVVISADEPHLEELTSGASSVMEYTPYRGELVLEGEFNRLNAGAAAEALEFLGVPS 254
Query: 850 VIGADHASVRSPLMGR---FNVDNLLAVAG 930
+ + H SV P+ GR F+V++ L VAG
Sbjct: 255 EVISRHLSVFRPVAGRIRSFSVNDALVVAG 284
>gi|3122403|sp|O06222|MURD_MYCTU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|2104323|emb|CAB08672|
(Z95388) murD [Mycobacterium tuberculosis]
Length = 486
Score = 62.5 bits (149), Expect = 9e-09
Identities = 67/250 (26%), Positives = 100/250 (39%)
Frame = +1
Query: 325 VTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLR 504
VTGTNGKT+T +L G R+ CG +G + D +
Sbjct: 118 VTGTNGKTTTTSMLHAMLIAGGRRAVLCGNIGSAVLD---------------------VL 156
Query: 505 DEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQD 684
DE A+ +A+E+SS L + + N+ DHLD+H M Y AAKAR+
Sbjct: 157 DEPAELLAVELSSFQLHW--APSLRPEAGAVLNIAEDHLDWHATMAEYTAAKARVLTG-- 212
Query: 685 VQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGAD 864
AV +DD LL G + RVG + ++ + L + DL +
Sbjct: 213 -GVAVAGLDDSRAAALLDG-SPAQVRVGFRLGEPAARELGVRDAHLVDRAFSDDLTL-LP 269
Query: 865 HASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXX 1044
AS+ P+ G V + LA A + ++ IA +++ R R + DG
Sbjct: 270 VASI--PVPGPVGVLDALAAAALARSVGVPAGAIADAVTSFRVGRHRAEVVAVADGITYV 327
Query: 1045 XXDYAHTPDA 1074
A P A
Sbjct: 328 DDSKATNPHA 337
>gi|2507071|sp|P11880|MURF_ECOLI
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME) >gi|1743865 (U67891)
UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme
[Escherichia coli] >gi|1786274 (AE000118)
D-alanine:D-alanine-adding enzyme [Escherichia coli]
Length = 452
Score = 62.5 bits (149), Expect = 9e-09
Identities = 83/330 (25%), Positives = 132/330 (39%), Gaps = 6/330 (1%)
Frame = +1
Query: 19 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 198
L +L Q D+ + + D+R++ PG F + A A GA A+L
Sbjct: 9 LTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVS 68
Query: 199 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGH-PSQAMTMVGVTGTNGKTSTVQLLAQA 375
P + +P + V R G +A P++ +V +TG++GKTS ++ A
Sbjct: 69 RPLD--IDLPQ--LIVKDTRLAFGELAAWVRQQVPAR---VVALTGSSGKTSVKEMTAAI 121
Query: 376 WHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALD 555
G T G L D VP L +L E AV ++H
Sbjct: 122 LSQCGNTLYTAGNLN---NDIGVP------------MTLLRLTPEYDYAVIELGANH--- 163
Query: 556 QGR----VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVINVDDPF 720
QG V + + NL HL+ G + AK +F+ + A++N D+
Sbjct: 164 QGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNND 223
Query: 721 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRF 900
L + G R+V ++D A ++ + G F L V PL GR
Sbjct: 224 WLNWQSVI--GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRH 281
Query: 901 NVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 1008
N+ N LA A + ++ L I A L+ L+ + GR+
Sbjct: 282 NIANALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317
>gi|96537|pir||S10691 UDP-N-acetylmuramyl-tripeptide synthetase -
Escherichia coli (fragment) >gi|581175|emb|CAA39334|
(X55814) UDP-N-acetylmuramyl-tripeptide synthetase
[Escherichia coli]
Length = 124
Score = 61.3 bits (146), Expect = 2e-08
Identities = 42/109 (38%), Positives = 55/109 (49%), Gaps = 9/109 (8%)
Frame = +1
Query: 28 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 207
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 208 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTST 354
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTT 123
>gi|2177096 (U67893) UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme
[Escherichia coli]
Length = 452
Score = 60.9 bits (145), Expect = 3e-08
Identities = 82/330 (24%), Positives = 131/330 (38%), Gaps = 6/330 (1%)
Frame = +1
Query: 19 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 198
L +L Q D+ + + D+R++ PG F + A A GA A+L
Sbjct: 9 LTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVS 68
Query: 199 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGH-PSQAMTMVGVTGTNGKTSTVQLLAQA 375
P + +P + V R G +A P++ +V +TG++GKTS ++ A
Sbjct: 69 RPLD--IDLPQ--LIVKDTRLAFGELAAWVRQQVPAR---VVALTGSSGKTSVKEMTAAI 121
Query: 376 WHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALD 555
G T G L D VP L +L E AV ++H
Sbjct: 122 LSQCGNTLYTAGNLN---NDIGVP------------MTLLRLTPEYDYAVIELGANH--- 163
Query: 556 QGR----VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVINVDDPF 720
QG V + + NL HL+ G + AK +F+ + A++N D+
Sbjct: 164 QGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNND 223
Query: 721 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRF 900
L + G R+V ++D A ++ + G F L V PL GR
Sbjct: 224 WLNWQSVI--GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRH 281
Query: 901 NVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 1008
N+ N L A + ++ L I A L+ L+ + GR+
Sbjct: 282 NIANALTAAALSMSVGATLDAIKAGLANLKAVPGRL 317
>gi|78921|pir||S04846 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase (EC
6.3.2.15) precursor - Escherichia coli
>gi|40854|emb|CAA38863.1| (X55034)
UDP-MurNac-pentapeptide presynthetase (AA -20 to 432)
[Escherichia coli] >gi|42048|emb|CAA33473| (X15432)
UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432)
[Escherichia coli] >gi|216500|dbj|BAA01351| (D10483)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl D alanine ligase precursor
[Escherichia coli]
Length = 452
Score = 60.1 bits (143), Expect = 4e-08
Identities = 77/330 (23%), Positives = 128/330 (38%), Gaps = 2/330 (0%)
Frame = +1
Query: 19 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 198
L +L Q D+ + + D+R++ PG F + A A A A+L
Sbjct: 9 LTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGAAGALLVS 68
Query: 199 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGH-PSQAMTMVGVTGTNGKTSTVQLLAQA 375
P + +P + V R G +A P++ +V +TG++GKTS ++ A
Sbjct: 69 RPLD--IDLPQ--LIVKDTRLAFGELAAWVRQQVPAR---VVALTGSSGKTSVKEMTAAI 121
Query: 376 WHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALD 555
G T G L + + T + + A + E A V++ AL
Sbjct: 122 LSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPERAL- 180
Query: 556 QGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVINVDDPFGLRL 732
NL HL+ G + AK +F+ + A++N D+ L
Sbjct: 181 -------------VNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNW 227
Query: 733 LHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDN 912
+ G R+V ++D A ++ + G F L V PL GR N+ N
Sbjct: 228 QSVI--GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIAN 285
Query: 913 LLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 1008
LA A + ++ L I A L+ L+ + GR+
Sbjct: 286 ALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317
>gi|3122410|sp|P73668|MURD_SYNY3
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME)
>gi|1652794|dbj|BAA17713| (D90908)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Synechocystis sp.]
Length = 452
Score = 59.3 bits (141), Expect = 7e-08
Identities = 38/137 (27%), Positives = 63/137 (45%)
Frame = +1
Query: 307 AMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQ 486
A+ VG+TGTNGKT+T L+ + G+ + CG +G
Sbjct: 105 AVPWVGITGTNGKTTTTSLVQAIFQKAGLNAPACGNIGYA-------------------A 145
Query: 487 CLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKAR 666
C L+++ + E+SS+ ++ + + ++T T DHL H +E+Y KA
Sbjct: 146 CELVLQNQNYDWIVAEISSYQIESSPT--LAPQIGLWTTFTPDHLSRHKTLENYFNIKAS 203
Query: 667 LFAHQDVQAAVINVDDP 717
L + +Q V+N DDP
Sbjct: 204 LLSRSAIQ--VLNGDDP 218
>gi|3393028|emb|CAA06440| (AJ005201) cyanophycin synthetase [Anabaena
variabilis]
Length = 901
Score = 58.9 bits (140), Expect = 1e-07
Identities = 91/339 (26%), Positives = 148/339 (42%), Gaps = 23/339 (6%)
Frame = +1
Query: 268 GAMADR-FHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVV 444
GA+ D F S + ++ VTGTNGKT+T +LLA + G T G + D +V
Sbjct: 471 GAVMDMLFPNEQSGRIPILSVTGTNGKTTTTRLLAHIYKQTGKVVGYTTTDGTYIGDYLV 530
Query: 445 PTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD 624
+G T L+D + +E + + + + +V V N+ DHL
Sbjct: 531 ESGDNT----GPQSAHVILQDPTVEVAVLETARGGILRSGLGFESANVGVVLNVAADHLG 586
Query: 625 YHGDMEHYG-AAKARLFAHQDVQA---AVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTD 792
GD++ A + + V AV+N DD R + +A+ + + D
Sbjct: 587 I-GDIDTIDQLANLKSVVAESVYPDGYAVLNADD----RRVAAMAEKTKANIAYFTMNPD 641
Query: 793 ADVMAQHLSLN----LQGIGFDLVIGAD--HASVRS---PLM--GR--FNVDNLLAVAGV 933
++++ +H+ + G+ ++ D H R+ PL GR F + N LA +
Sbjct: 642 SELVRKHIQKGGVAAVYENGYLSIVKGDWTHRIERAEQIPLTMGGRAPFMIANALAASLA 701
Query: 934 LYALNYALSEIAAVLSTLR----PIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLS 1101
+ N ++ +I A L T R GRMN G DYAH P + V + +
Sbjct: 702 AFVQNVSIEQIRAGLRTFRASVSQTPGRMNLF--NLGNYHALVDYAHNPASYEAVGAFVR 759
Query: 1102 SHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFV-TDDNPRGEDGDGIVADILAGF 1278
+ G+ I V G G+R + +A D + V DD+ RG A I G
Sbjct: 760 NWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDDDTRGRPRGSASALITKGI 819
Query: 1279 AR 1284
+
Sbjct: 820 TQ 821
>gi|3122402|sp|O06220|MURF_MYCTU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME)
>gi|2104321|emb|CAB08670| (Z95388) murF [Mycobacterium
tuberculosis]
Length = 510
Score = 58.9 bits (140), Expect = 1e-07
Identities = 96/346 (27%), Positives = 137/346 (38%), Gaps = 23/346 (6%)
Frame = +1
Query: 64 ISGLV-MDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAI 240
++G V DSR + PG G A A GA +L P V
Sbjct: 30 VTGTVEFDSRAIGPGGLFLALPGARADGHDHAASAVAAGAAVVLAARPVGVPAIVVPPVA 89
Query: 241 AVHGLR------------ARLGAMADRFHGHPSQ----AMTMVGVTGTNGKTSTVQLLAQ 372
A + L A L A+A +Q +T++G+TG++GKTST L+A
Sbjct: 90 APNVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAA 149
Query: 373 AWHCLGVRSATCGTLGVGL---YDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 543
LG A G+ L + + T T L+L++ R G A E++
Sbjct: 150 VLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEM-----AARHHGNIAALAEIAP 204
Query: 544 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL-FAHQDVQAAVINVDDPF 720
++ V N+ HL G E KA L A A V+N DDP
Sbjct: 205 PSIG------------VVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDP- 251
Query: 721 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLN-LQGIGFDLVIGADHASVRSPLMGR 897
+ +AK V V DV A +SL+ L F L A VR + G
Sbjct: 252 ---AVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGD 308
Query: 898 FNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI-HGRMNRLGGQDGQPXXXXDYAHTPDA 1074
V N L A V ++ ++AA L+ P+ RM DG Y PD+
Sbjct: 309 HQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDS 368
Query: 1075 LGQVLSSLS 1101
+ L +L+
Sbjct: 369 MRAGLQALA 377
>gi|5834372|gb|AAD53938.1|AF179611_22 (AF179611)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Zymomonas mobilis]
Length = 269
Score = 58.2 bits (138), Expect = 2e-07
Identities = 49/150 (32%), Positives = 66/150 (43%), Gaps = 1/150 (0%)
Frame = +1
Query: 265 LGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVV 444
L A A F + +VG+TGTNGK++T L+ G+ + G +G+ L
Sbjct: 107 LFAQAHGFWERHGRRCPVVGITGTNGKSTTTALIHHILKEAGLPTLMGGNIGLPLL---- 162
Query: 445 PTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD 624
L D G +E+SS+ +D + D+ V TN+T DHLD
Sbjct: 163 --------------AADPLPDGGVYV--LELSSYQIDLTFT--LDCDIAVLTNITPDHLD 204
Query: 625 YHGDMEHYGAAKARLFAHQ-DVQAAVINVDD 714
HG E Y AK RLF Q AVI DD
Sbjct: 205 RHGGFEGYRKAKERLFLLQSSPHYAVIATDD 235
>gi|6093445|sp|O83873|MURD_TREPA
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|3323217 (AE001259)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
[Treponema pallidum]
Length = 532
Score = 57.0 bits (135), Expect = 4e-07
Identities = 42/138 (30%), Positives = 68/138 (48%), Gaps = 2/138 (1%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQC-L 492
++ V+G+ GK+ST L + LG + G V + V T TP+VL+L L
Sbjct: 119 LLAVSGSKGKSSTASALCYSLRALGFPAFLGGNSTVSPLEFVRHTTPATPVVLELSSWQL 178
Query: 493 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF 672
A LR A++ H + + + ++ + T + DH +++ DME Y A K L+
Sbjct: 179 ADLR-------AVDAQDHTVHHAGL--LRPEIAIMTPIMADHQNWYADMESYVADKQVLY 229
Query: 673 AHQDVQAAVI-NVDDPFGLR 729
AHQ ++ N DD +G R
Sbjct: 230 AHQGTHDTLLCNADDGWGPR 249
>gi|3080475|emb|CAA18670.1| (AL022602) udp-n-acetylmuramoylalanine--
d-glutamate ligase [Mycobacterium leprae]
Length = 490
Score = 56.6 bits (134), Expect = 5e-07
Identities = 55/181 (30%), Positives = 78/181 (42%), Gaps = 3/181 (1%)
Frame = +1
Query: 193 FEPPAPQGVSVPDGAIAVHG---LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 363
F P P V+ + + G L RL A ++G P + + VTGTNGKT+T +
Sbjct: 80 FAPTTPVLVAASAARVPIWGDVELAWRLDAAG--YYGPPRRWLV---VTGTNGKTTTTSM 134
Query: 364 LAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 543
L RS CG +G + D V T F P + +A+E+SS
Sbjct: 135 LHAMLAADNRRSLLCGNIGRPVLD--VLTEFAEP----------------SDFLAVELSS 176
Query: 544 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFG 723
L + + V N+ DHLD+H M Y AKAR+ + AV+ +DD
Sbjct: 177 FQLHW--APSLRPEAGVVLNIAEDHLDWHSTMADYTMAKARVLTG---RVAVVGLDDSRA 231
Query: 724 LRLL 735
LL
Sbjct: 232 AALL 235
>gi|6225734|sp|Q9ZDS8|MURC_RICPR UDP-N-ACETYLMURAMATE--ALANINE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE)
>gi|3860809|emb|CAA14709| (AJ235271)
UDP-N-ACETYLMURAMATE--ALANINE LIGASE (murC) [Rickettsia
prowazekii]
Length = 495
Score = 55.4 bits (131), Expect = 1e-06
Identities = 65/307 (21%), Positives = 139/307 (45%), Gaps = 15/307 (4%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
V V+G++GKT+T L+A CL + C T+ G ++ T + + +A+
Sbjct: 116 VAVSGSHGKTTTTSLIA----CLFEAAGLCPTVING---GIINNKSTNAYLGSSNYLIAE 168
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDME-HYGAAKARLFA 675
+ A + + + + + TN+ +HLDY+ D E GA ++ +
Sbjct: 169 ADESDATFIHIPST---------------IAIITNIDPEHLDYYQDFEILIGAFRSFITN 213
Query: 676 HQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVI 855
AV +D +L+ + + R++ DA ++A +++ ++ FD+ I
Sbjct: 214 LPFYGFAVCCIDHKIVRKLVDDITE--RKIITYGIDSEDAHIIAFNINTDIASSTFDVKI 271
Query: 856 GADHA-------SVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNR 1014
+ + P GR N+ N LA V L++ + I + + + R +
Sbjct: 272 SLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTK 331
Query: 1015 LGGQDGQPXXXXDYAHTPDALGQVLS---SLSSHVCGRLICVFGCGGERDRGKRSQMA-- 1179
+ + + DYAH P+ + L+ ++++ G++I +F + R R +
Sbjct: 332 V-AEYNKAVIIDDYAHHPEEIKATLATAKNIANQQNGKVIAIF----QPHRYSRIKYLFD 386
Query: 1180 --VIAESNADVVFVTDDNPRGE 1239
++ ++AD++++T+ GE
Sbjct: 387 DFMLCFADADILYITNIYAAGE 408
>gi|5834369|gb|AAD53935.1|AF179611_19 (AF179611)
UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis]
Length = 486
Score = 53.9 bits (127), Expect = 3e-06
Identities = 69/271 (25%), Positives = 111/271 (40%), Gaps = 10/271 (3%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
V V GT+GKT+T ++A L G D V G ++ + A+
Sbjct: 111 VAVAGTHGKTTTTSMVA-------------ALLDAGGIDPTVINGG----IINSYGSNAR 153
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH 678
L D V + S + R+DG + + TN+ +HLD++G E A ++
Sbjct: 154 LGDSDWMVVEADESDGSF--LRLDGT---LAIVTNIDPEHLDHYGSFEKVQDAFVEFVSN 208
Query: 679 QDVQ-AAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVI 855
AA + +D P +L + RR+ ++ AD+ A ++ G F VI
Sbjct: 209 VPFYGAAFLCIDHPVVQSILPRIRD--RRL-ITYGFSAQADIRAVDITPISGGNRFTAVI 265
Query: 856 GADHASVRS------PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRL 1017
+R P+ GR N+ N L+ GV + + I + + R +R+
Sbjct: 266 RGRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRV 325
Query: 1018 GG---QDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICV 1131
G DG DY H P + VLS+ R+I V
Sbjct: 326 GEIKICDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366
>gi|3090871 (AF035938) uridine diphosphate
N-acetylmuramoyl-L-alanine:D-glutamate ligase
[Streptococcus pyogenes]
Length = 452
Score = 53.9 bits (127), Expect = 3e-06
Identities = 60/235 (25%), Positives = 92/235 (38%), Gaps = 1/235 (0%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
++G+TG+NGKT+T ++A + G + G +G P + + +A
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGY-------------PASKVVQKAIA 160
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 675
+ ME+SS L V+ + V TNL HLDYHG E Y AAK + A
Sbjct: 161 ------GDTLVMELSSFQLVG--VNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQA 212
Query: 676 HQ-DVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 852
+ ++N + LAK + + T V +L + +
Sbjct: 213 QMTESDYLILNANQEISAT----LAKTTQATVIPF--STQKVVDGAYLKDGILYFKEQAI 266
Query: 853 IGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG 1020
I A V G N++N LA V A IA LS + R+ R+G
Sbjct: 267 IAATDLGV----PGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRVG 318
>gi|417327|sp|Q03522|MURD_BACSU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|478078|pir||D47691
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC
6.3.2.9) - Bacillus subtilis >gi|580932|emb|CAA78769|
(Z15056) murD [Bacillus subtilis]
>gi|2633891|emb|CAB13393| (Z99111)
UDP-N-acetylmuramoylalanine D-glutamate ligase [Bacillus
subtilis]
Length = 451
Score = 53.1 bits (125), Expect = 6e-06
Identities = 61/264 (23%), Positives = 106/264 (40%), Gaps = 5/264 (1%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
+G+TG+NGKT+T L+ + ++ G +G T + H
Sbjct: 116 IGITGSNGKTTTTTLIYEMLKADSQKALIAGNIG------------TVASEVAYHA---- 159
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHY---DVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
+G + + E+SS L G H ++ + N+ HLDYH E+Y AK ++
Sbjct: 160 ---DGDEWIVTELSSFQLM-----GTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 211
Query: 670 FAHQDV-QAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGI-GF 843
+ HQ A++N DD +RL + VS A V + N + I
Sbjct: 212 YLHQTASDKAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAILPL 271
Query: 844 DLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGG 1023
+ V+ L G N++N+LA V+ + + VL++ + R+ +
Sbjct: 272 EEVV----------LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT 321
Query: 1024 QDGQPXXXXDYAHTPDALGQVLSSLSSHV 1110
+G+ A A + LS+ V
Sbjct: 322 VNGRKFYNDSKATNILATSKALSAFDKPV 350
>gi|1652973|dbj|BAA17890| (D90910) hypothetical protein [Synechocystis
sp.]
Length = 873
Score = 53.1 bits (125), Expect = 6e-06
Identities = 85/326 (26%), Positives = 133/326 (40%), Gaps = 21/326 (6%)
Frame = +1
Query: 292 GHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLV 471
G PS+ + ++ VTGTNGKT+T +LLA + G T + + + V G T
Sbjct: 483 GTPSR-IPILAVTGTNGKTTTTRLLAHIYRQTGKTVGYTSTDAIYINEYCVEKGDNT--- 538
Query: 472 LQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGD---ME 642
LRD + +E + + + + DV V N+ DHL GD +E
Sbjct: 539 -GPQSAAVILRDPTVEVAVLETARGGILRAGLAFDTCDVGVVLNVAADHLGL-GDIDTIE 596
Query: 643 HYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLS 819
K+ + D AV+N DDP L+ +A ++ + D V+ H+
Sbjct: 597 QMAKVKSVIAEVVDPSGYAVLNADDP----LVAAMADKVKAKVAYFSMNPDNPVIQNHIR 652
Query: 820 LN-------------LQGIGFDLVIGADHASVRSPLMGRFNVDNLLA--VAGVLYALNYA 954
N L+G V A + M F + N LA +A + L+
Sbjct: 653 RNGIAAVYESGYVSILEGSWTLRVEEATLIPMTMGGMAPFMIANALAACLAAFVNGLDVE 712
Query: 955 L--SEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLIC 1128
+ + ++ GRMN G+ DYAH P V + + R
Sbjct: 713 VIRQGVRTFTTSAEQTPGRMNLF--NLGRYHALVDYAHNPAGYRAVGDFVKNWHGQRFGV 770
Query: 1129 VFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADIL 1269
V G G RD + A+ ++ DD+ RG G G AD++
Sbjct: 771 VGGPGDRRDSDLIELGQIAAQVFDRIIVKEDDDKRGRSG-GETADLI 816
>gi|1171072|sp|P45063|MURD_HAEIN
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|1075422|pir||B64185
UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574691 (U32793)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
[Haemophilus influenzae Rd]
Length = 437
Score = 53.1 bits (125), Expect = 6e-06
Identities = 51/239 (21%), Positives = 97/239 (40%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
+VG+TG+NGK++ L+ + GV+ G +G+
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP---------------------AL 145
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 675
L +E + +E+SS L+ + N+T DH+D + D+E Y AK R++
Sbjct: 146 SLLNEDCELYVLELSSFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY- 202
Query: 676 HQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVI 855
+ + V+N +D RL G + + VS ++ + + ++++
Sbjct: 203 -HNAKVGVLNNED----RLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVIL 257
Query: 856 GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDG 1032
+ A+ L+GR N N+LA + A+ L I L + + R + +G
Sbjct: 258 PCEEAT----LVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVHQANG 312
>gi|2983375 (AE000709) UDP-MURNAC-pentapeptide sythetase [Aquifex
aeolicus]
Length = 445
Score = 52.3 bits (123), Expect = 1e-05
Identities = 76/333 (22%), Positives = 131/333 (38%), Gaps = 9/333 (2%)
Frame = +1
Query: 10 SMPLAQLLP-DIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 186
S LA++L + + ++ + +DSR ++ G+ FI DA +GAV
Sbjct: 5 SQTLAKILKGSLVGSPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGAVG 64
Query: 187 ILFEPPAPQGVSVPDGAIAV------HGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKT 348
++ E + V VP G + LR + F G ++GV G+ GKT
Sbjct: 65 VISE----REVDVPPGKFLIKVRSTLESLREIAKFKRENFKGK------VIGVAGSAGKT 114
Query: 349 STVQLLAQAWHCLGVRSATCGTLG--VGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQA 522
+T +LL+ G + G L VGL V T + H GA
Sbjct: 115 TTKELLSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEH---------GA-- 163
Query: 523 VAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVI 702
S + ++ V + T L +HL+ G +E A +F
Sbjct: 164 -----SKRGEIKNLIEITKPHVRLITTLGEEHLEGFGSLEGVIWGNAEMFCR-------- 210
Query: 703 NVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRS 882
+ D F + + + + ++ AQ++ ++ +G+ F+ + + +
Sbjct: 211 -ISDNFYAVIPGKFLDTLFFLPKKISFGERGELQAQNVEVSEKGVSFE--VEGEKFFISV 267
Query: 883 PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 1008
P +G V+N+LA VL L + L E L P+ GRM
Sbjct: 268 PSLGL--VENILACFCVLKVLGFTLKEFKEALKEFSPVEGRM 307
>gi|3024202|sp|P96613|MURF_BACSU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME)
>gi|1881267|dbj|BAA19294| (AB001488) PROBABLE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2, 6-DIAMINOLIGASE
(EC 6.3.2.15). [Bacillus subtilis]
>gi|2632757|emb|CAB12264| (Z99106)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
subtilis]
Length = 457
Score = 51.9 bits (122), Expect = 1e-05
Identities = 91/390 (23%), Positives = 150/390 (38%), Gaps = 14/390 (3%)
Frame = +1
Query: 43 PQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS 222
PQ VI G+ D+R+++ G F+E A G A+L++ P
Sbjct: 20 PQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGVAAVLWDRSVPN--- 76
Query: 223 VPDGAIAVHGLRARLGAMADRFHGHPSQAMT-MVGVTGTNGKTSTVQLLAQAWHCLGVRS 399
P AV + L A+ + + T ++GVTG+NGKT+T ++ H +
Sbjct: 77 -PPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMI----HAV---- 127
Query: 400 ATCGTLGVGLYDQVVPTG--FTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDG 573
+G +V TG F + L L E + +E+ A +G +D
Sbjct: 128 -------LGTQYRVHKTGGNFNNHIGLPL---TVLAMPENTEIAVLEMGMSA--KGEIDL 175
Query: 574 V----HYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHG 741
+ + D V TN+ H+ G E AK + +I + D L+ +
Sbjct: 176 LSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQNAYS 235
Query: 742 LAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLA 921
G T D Q +S + +G F I + P++G+ NV N +A
Sbjct: 236 CQTKTYGTG------THNDYQLQDVSQSEEGTHF--TIKGIENTFFIPILGKHNVMNAMA 287
Query: 922 VAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALG---QVLS 1092
A + A LS L+ R+ + G Y +P ++ Q+
Sbjct: 288 AIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTE 347
Query: 1093 SLSSHVCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVF 1212
SL + G+ + V G G + + AVI+ D VF
Sbjct: 348 SLEGY--GKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVF 389
>gi|39993|emb|CAA45555| (X64258)
UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
subtilis] >gi|383709|prf||1904153A murD gene [Bacillus
subtilis]
Length = 369
Score = 51.9 bits (122), Expect = 1e-05
Identities = 56/239 (23%), Positives = 99/239 (40%), Gaps = 5/239 (2%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
+G+TG+NGKT+T L+ + ++ G +G T + H
Sbjct: 34 IGITGSNGKTTTTTLIYEMLKADSQKALIAGNIG------------TVASEVAYHA---- 77
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHY---DVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
+G + + E+SS L G H ++ + N+ HLDYH E+Y AK ++
Sbjct: 78 ---DGDEWIVTELSSFQLM-----GTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 129
Query: 670 FAHQDV-QAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGI-GF 843
+ HQ A++N DD +RL + VS A V + N + I
Sbjct: 130 YLHQTASDKAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAILPL 189
Query: 844 DLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGG 1023
+ V+ L G N++N+LA V+ + + VL++ + R+ +
Sbjct: 190 EEVV----------LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT 239
Query: 1024 QDGQ 1035
+G+
Sbjct: 240 VNGR 243
>gi|3122408|sp|O31211|MURC_STAAU UDP-N-ACETYLMURAMATE--ALANINE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE)
>gi|2642659|gb|AAB87090.1| (AF034076)
UDP-N-acetylmuramoyl-L-alanine synthetase [Staphylococcus
aureus]
Length = 437
Score = 51.5 bits (121), Expect = 2e-05
Identities = 70/270 (25%), Positives = 100/270 (36%), Gaps = 2/270 (0%)
Frame = +1
Query: 286 FHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTP 465
F G T V VTG +GKTST LL+ H + T +G G TG P
Sbjct: 93 FLGQIIDQYTSVAVTGAHGKTSTTGLLS---HVMNGDKKTSFLIGDG-------TGMGLP 142
Query: 466 LVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEH 645
+ A E H L D + TN+ DH DY D+
Sbjct: 143 ------------ESDYFAFEACEYRRHFLSYKP------DYAIMTNIDFDHPDYFKDIND 184
Query: 646 YGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDA-DVMAQHLSL 822
A + AH +V+ +I D LR + V + G D+ D+ AQ++ +
Sbjct: 185 VFDAFQEM-AH-NVKKGIIAWGDDEHLRKIEA------DVPIYYYGFKDSDDIYAQNIQI 236
Query: 823 NLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIH 999
+G FD+ + G + SP G V N LAV + Y ++ I L T +
Sbjct: 237 TDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVK 296
Query: 1000 GRMNRLGGQDGQPXXXXDYAHTPDALGQVLSS 1095
R N DYAH P + + +
Sbjct: 297 RRFNET--TIANQVIVDDYAHHPREISATIET 326
>gi|2983764 (AE000736) UDP-N-acetylmuramate-alanine ligase [Aquifex
aeolicus]
Length = 454
Score = 51.5 bits (121), Expect = 2e-05
Identities = 86/355 (24%), Positives = 141/355 (39%), Gaps = 12/355 (3%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
+ V+G++GKT+T ++A+ + GL V+ G +
Sbjct: 109 IAVSGSHGKTTTTSMIAEI------------LINAGLEPTVIIGG--------------R 142
Query: 499 LRDEGAQAVA----MEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKAR 666
L+ G A + VS G + V V TN+ ++HLD++ + E A +
Sbjct: 143 LKRLGTNAKLGRGELLVSEADESDGSFLKLQPAVAVITNVDKEHLDFYENFERVKEAFEQ 202
Query: 667 LFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGF 843
AV+N+DDP +L+ + + G+ ++ A V A++L L F
Sbjct: 203 FMNSVPFYGFAVVNLDDPTLAQLVKKSHERVITYGI----NSPALVRAKNLYLKEGRYEF 258
Query: 844 DLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG 1020
+ G + + + G NV N LA GV L + I L R R+ G
Sbjct: 259 GVEFKGKELGRIHLGIAGIHNVYNALAATGVALELGVSFEVIKKSLEEFRNAERRLELKG 318
Query: 1021 GQDGQPXXXXDYAHTPDALGQVLSSL-SSHVCGRLICVFGCGGERDRGKRS----QMAVI 1185
P DY H P + V++SL + L+ VF + R R+ + V
Sbjct: 319 YYKNSP-VYDDYGHHPTEIKAVINSLRDMYPDKNLLVVF----QPHRYSRTYYLFEDFVK 373
Query: 1186 AESNADVVFVTDDNPRGEDG-DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDV 1362
+ D + VTD P E+ G+ A+ L AR + +D+ DV
Sbjct: 374 VLKDIDKLIVTDIYPASENNVYGVSAEEL---ARKSGAVFAKDKEEVFEKVREVHDEGDV 430
Query: 1363 VLIAGKG 1383
+L G G
Sbjct: 431 ILFLGAG 437
>gi|4009480 (AF068902) D-glutamic acid adding enzyme MurD
[Streptococcus pneumoniae]
Length = 450
Score = 50.0 bits (117), Expect = 5e-05
Identities = 34/115 (29%), Positives = 51/115 (43%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
++G+TG+NGKT+T ++ + G G +G +A
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQ------------------VA 155
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 660
Q+ + + ME+SS L V H ++ V TNL H+DYHG E Y AAK
Sbjct: 156 QIATD-KNTLVMELSSFQLMG--VQEFHPEIAVITNLMPTHIDYHGLFEEYVAAK 207
>gi|3122404|sp|O06225|MURC_MYCTU UDP-N-ACETYLMURAMATE--ALANINE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE)
>gi|2104326|emb|CAB08641| (Z95388) murC [Mycobacterium
tuberculosis]
Length = 494
Score = 50.0 bits (117), Expect = 5e-05
Identities = 81/278 (29%), Positives = 121/278 (43%), Gaps = 25/278 (8%)
Frame = +1
Query: 313 TMVGVTGTNGKTSTVQLLAQAW-HC-LGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQ 486
T + VTGT+GKT+T +L A HC L A G LG + +G
Sbjct: 116 TTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHGSG----------D 165
Query: 487 CLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKAR 666
C DE ++ ++ + H V V TN+ DHLD++G +E Y A
Sbjct: 166 CFVAEADESDGSL-LQYTPH-------------VAVITNIESDHLDFYGSVEAY-VAVFD 210
Query: 667 LFAHQDVQ--AAVINVDDPFGLRLLHGLAKGMRRVGVSVC--GHTDADVMAQHL-SLNLQ 831
F + V A V+ DDP G LA+ +G+ V G + MA L S Q
Sbjct: 211 SFVERIVPGGALVVCTDDPGGA----ALAQRATELGIRVLRYGSVPGETMAATLVSWQQQ 266
Query: 832 GIG--FDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGR 1005
G+G + + ++ A+ + P + R L+V G ALN AL + A + P
Sbjct: 267 GVGAVAHIRLASELATAQGPRVMR------LSVPGRHMALN-ALGALLAAVQIGAPADEV 319
Query: 1006 MNRLGGQDG----------------QPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFG 1137
++ L G +G DYAH P + L++ R++ G
Sbjct: 320 LDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTEISATLAA------ARMVLEQG 373
Query: 1138 CGG 1146
GG
Sbjct: 374 DGG 376
>gi|3080477|emb|CAA18672.1| (AL022602)
udp-n-acetylmuramoylalanyl-d-glutamyl
-2,6-diaminopimelate--d-alanyl-d-alanyl ligase
[Mycobacterium leprae]
Length = 517
Score = 49.6 bits (116), Expect = 6e-05
Identities = 92/347 (26%), Positives = 132/347 (37%), Gaps = 31/347 (8%)
Frame = +1
Query: 61 VISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA--PQGVSVPDG 234
V + DSR V PG G A A GAVA+L P P V PD
Sbjct: 30 VTGSVEFDSRAVGPGGLFLALPGARSDGHDHAASAIAAGAVAVLAARPVGVPAIVVAPDP 89
Query: 235 AIAVHGLR------------ARLGAMADRFHGHPSQ----AMTMVGVTGTNGKTSTVQLL 366
GL A L A+A ++ +T++G+TG++GKTST L+
Sbjct: 90 RTGDGGLTGVLEHDADGSGAAVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLV 149
Query: 367 AQAWHCLGVRSATCGTLGVGL---YDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 537
A LG A + L + + T T L+L++ R G A +
Sbjct: 150 AVVLELLGEVVAPPESFNNELGHPWTVLRATRSTDYLILEM-----SARRPGNIAALAAI 204
Query: 538 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL-FAHQDVQAAVINVDD 714
+ + V N+ HL G E K L A ++NVDD
Sbjct: 205 APPKIG------------VVLNVGTAHLGEFGSREAIARTKTELPQAIMQSGVVILNVDD 252
Query: 715 PFGLRLLHGLAKGMRRVGVSVCGH----TDADVMAQHLSLN-LQGIGFDLVI---GADHA 870
P + + RV H DV +SL+ L F L A
Sbjct: 253 PAVAAMADATVARVIRVSRGSYSHPGSPNSPDVWTGPVSLDELARPRFTLHTRDPRAGAT 312
Query: 871 SVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI-HGRMNRLGGQDGQPXXX 1047
++ + G V N L A V ++ E+A L+ P+ RM DG
Sbjct: 313 EIQLGVYGDHQVANALCAAAVGLECGASVEEVAVALAATGPVSRHRMQVTTRADGVTVID 372
Query: 1048 XDYAHTPDALGQVLSSLS 1101
Y PD++ L +L+
Sbjct: 373 DTYNANPDSMRAGLQALA 390
>gi|4377221|gb|AAD19039| (AE001670) Muramoylalanine-Glutamate Ligase
[Chlamydia pneumoniae]
Length = 417
Score = 49.2 bits (115), Expect = 8e-05
Identities = 32/116 (27%), Positives = 50/116 (42%)
Frame = +1
Query: 322 GVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQL 501
G+TG+NGKT+T L + LG+ + G +G+ + D + G
Sbjct: 105 GITGSNGKTTTTLFLTHLLNTLGIPAIAMGNIGLPILDHMGQPGVR-------------- 150
Query: 502 RDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
+E+SS L VF N +R+HLDYH +++ Y AK R+
Sbjct: 151 --------VVEISSFQLATQEEHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI 198
>gi|1171075|sp|P45450|MURF_SYNY3
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME)
>gi|1084179|pir||S49610
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase (EC
6.3.2.15) - Synechocystis sp. (PCC 6803)
>gi|575416|emb|CAA44303| (X62437)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Synechocystis sp.]
Length = 454
Score = 48.4 bits (113), Expect = 1e-04
Identities = 83/350 (23%), Positives = 131/350 (36%), Gaps = 8/350 (2%)
Frame = +1
Query: 49 ARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS-- 222
+ D+ I+ + D+R + GD G FI A GA+A++ + P +G+
Sbjct: 25 SEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDRPV-EGLGET 83
Query: 223 -----VPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCL 387
V D +A + A RF + ++GVTG+ GKT+T +L+A
Sbjct: 84 VAQFLVEDTLVAYQHIAA---GWRQRF------TIPIIGVTGSVGKTTTKELIAAVLSQF 134
Query: 388 GVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRV 567
G T Y+ + T +L+L D V M +
Sbjct: 135 GNVHKTRAN-----YNNEIGVPKT---LLELSP------DHDFAIVEMAMRGRGQIALLA 180
Query: 568 DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGL 744
D + + TN+ H+ G AK L AHQ ++ A++N D+ +
Sbjct: 181 DIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNALLMETAQRF 240
Query: 745 AKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAV 924
+G G V ++L L D S+ PL G N N LA
Sbjct: 241 WQGKTITYGLEGGDVHGTVDGENLIL-------------DGVSLPLPLAGVHNASNYLAA 287
Query: 925 AGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSL 1098
+ L ++ + L+ P GR R Q GQ D + D L +L+SL
Sbjct: 288 IALAQCLGLDWQQLQSGLTVELP-KGRARRY--QWGQDVVLLDETYN-DGLESMLASL 341
>gi|4980734|gb|AAD35327.1|AE001707_14 (AE001707)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
maritima]
Length = 426
Score = 48.4 bits (113), Expect = 1e-04
Identities = 59/222 (26%), Positives = 90/222 (39%), Gaps = 1/222 (0%)
Frame = +1
Query: 52 RDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPD 231
+D++ V++S+EV+ GD G FI++A GA AI+ E D
Sbjct: 2 KDLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNS----D 57
Query: 232 GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCG 411
V L +A G+ S T+VGVTG++GKT+T ++L ++ L + +
Sbjct: 58 RIFLVESSVDTLAKLAREKLGNFSG--TVVGVTGSSGKTTTKEIL---YNLLKNKRSVFK 112
Query: 412 TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVV 591
T G + T + PL + L + E + M S DV
Sbjct: 113 TPG------NMNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVA 161
Query: 592 VFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDP 717
V N+ HL++ G E K + H A AV DDP
Sbjct: 162 VLLNVGSAHLEFFGTRERIMETKMEIIKHSKENAIAVTLFDDP 204
>gi|1653256|dbj|BAA18171| (D90912)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Synechocystis sp.]
Length = 454
Score = 46.9 bits (109), Expect = 4e-04
Identities = 78/327 (23%), Positives = 122/327 (36%), Gaps = 9/327 (2%)
Frame = +1
Query: 49 ARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS-- 222
+ D+ I+ + D+R + GD G FI A GA+A++ + P +G+
Sbjct: 25 SEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDRPV-EGLGET 83
Query: 223 -----VPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCL 387
V D +A + A RF + ++GVTG+ GKT+T +L+A
Sbjct: 84 VAQFLVEDTLVAYQHIAA---GWRQRF------TIPIIGVTGSVGKTTTKELIAAVLSQF 134
Query: 388 GVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRV 567
G T Y+ + T +L+L D V M +
Sbjct: 135 GNVHKTRAN-----YNNEIGVPKT---LLELSP------DHDFAIVEMAMRGRGQIALLA 180
Query: 568 DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGL 744
D + + TN+ H+ G AK L AHQ ++ A++N D+ +
Sbjct: 181 DIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNALLMETAQRF 240
Query: 745 AKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAV 924
+G G V ++L L D S+ PL G N N LA
Sbjct: 241 WQGKTITYGLEGGDVHGTVDGENLIL-------------DGVSLPLPLAGVHNASNYLAA 287
Query: 925 AGVLYALNYALSEIAAVLSTLRPIHGRMNRL-GGQD 1029
V L ++ + L+ P GR R GQD
Sbjct: 288 IAVAQCLGLDWQQLQSGLTVELP-KGRARRYQWGQD 322
>gi|3122405|sp|O07108|MURD_ENTFA
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|2149905 (U94707)
D-glutamic acid adding enzyme [Enterococcus faecalis]
Length = 456
Score = 46.5 bits (108), Expect = 6e-04
Identities = 38/115 (33%), Positives = 55/115 (47%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
+VG+TGTNGKT+T ++ + R+A L + GF V Q A
Sbjct: 114 IVGITGTNGKTTTTTMIGLLLNA--DRTAGEARLAGNI-------GFPASTVAQE----A 160
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 660
+D+ + ME+SS L ++ H + V TN+ HLDYHG + Y AAK
Sbjct: 161 TAKDD----LVMELSSFQLMG--IETFHPQIAVITNIFEAHLDYHGSRKEYVAAK 209
>gi|6093451|sp|O83401|MURF_TREPA
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME) >gi|3322664 (AE001217)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
[Treponema pallidum]
Length = 459
Score = 46.5 bits (108), Expect = 6e-04
Identities = 76/312 (24%), Positives = 118/312 (37%), Gaps = 10/312 (3%)
Frame = +1
Query: 70 GLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQG-------VSVP 228
G+ DSR V P D G F+E+A +GAVA L + P
Sbjct: 28 GVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQKGAVATLIDQRYPHAGEYVAWCTRFG 87
Query: 229 DGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATC 408
IAVH L +A F+ A+ +G+TG++GKT TV+ +A+A R
Sbjct: 88 AACIAVHDTLRALQDLAS-FYCKKFPALIRIGITGSSGKT-TVKEMARAVFSERYR---- 141
Query: 409 GTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDE---GAQAVAMEVSSHALDQGRVDGVH 579
VV T + L Q L +R E G + M ++ H
Sbjct: 142 ----------VVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGEMRTLAQILVPH 191
Query: 580 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMR 759
Y ++ TN+ H+ G + K +F+ + DD + + L + G
Sbjct: 192 YAII--TNVGCAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVPDDAYRV-FLSNIPYGR- 247
Query: 760 RVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLY 939
V V + + + L+G + +R PL G N N LAV +
Sbjct: 248 ---VVVYDQGGRGLATEVIDEGLRGSR----VLYQGRWIRVPLPGVHNAKNALAVIALAA 300
Query: 940 ALNYALSEIAAVLSTLRPIHGR 1005
+ EI + ++P GR
Sbjct: 301 QVGLPAEEIQRGMERVKPPFGR 322
>gi|5834374|gb|AAD53940.1|AF179611_24 (AF179611)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
mobilis]
Length = 463
Score = 46.1 bits (107), Expect = 7e-04
Identities = 78/320 (24%), Positives = 122/320 (37%), Gaps = 4/320 (1%)
Frame = +1
Query: 55 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAP-QGVSVPD 231
D + + DSRE+Q GD G ++E A RGA + P P + V D
Sbjct: 21 DFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAAFKRGAAGAVVMSPVPYPHILVDD 80
Query: 232 GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCG 411
A+ L A+A R H ++G+TG+ GKTST + L A +
Sbjct: 81 SYQALKDL-----AVASRKRNHGK----IIGITGSVGKTSTKESLRLALERMAPEKV--- 128
Query: 412 TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDG-VHYDV 588
+ Y+ V PL LA++ +E + +HA + + V DV
Sbjct: 129 HYSLKSYNNHV----GVPL------SLARMPEESLFGIFEMGMNHAGELSDLTKLVQPDV 178
Query: 589 VVFTNLTRDHLDYHGDMEHYGAAKARLF-AHQDVQAAVINVDDPFGLRLLHGLAKGMRRV 765
+ T + H + D AK+ +F A+I D P+ LL A+ +
Sbjct: 179 ALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPY-RDLLTAKAQEKKAE 237
Query: 766 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFN-VDNLLAVAGVLYA 942
S A + AQ++ G D V S M + + N +AV V+ A
Sbjct: 238 IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMAVLAVVDA 297
Query: 943 LNYALSEIAAVLSTLRPIHGRMNR 1014
+ L+ + L + GR R
Sbjct: 298 VGGDLTLASLALGDITGFQGRGQR 321
>gi|127537|sp|P14900|MURD_ECOLI
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|68625|pir||CEECME
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC
6.3.2.9) - Escherichia coli >gi|40856|emb|CAA38865.1|
(X55034) UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438)
[Escherichia coli] >gi|42060|emb|CAA35933| (X51584) murD
gene product (AA 1-438) [Escherichia coli]
>gi|216502|dbj|BAA01353| (D10483)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Escherichia coli] >gi|1786276 (AE000118)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Escherichia coli]
Length = 438
Score = 45.7 bits (106), Expect = 0.001
Identities = 63/278 (22%), Positives = 112/278 (39%), Gaps = 2/278 (0%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
+V +TG+NGK++ L+ + GV G +G+ P ++
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL-------------PALM------- 146
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD-YHGDMEHYGAAKARLF 672
L D+ + +E+SS L+ + N+T DH+D Y ++ Y AAK R++
Sbjct: 147 -LLDDECELYVLELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 203
Query: 673 AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 852
++ + V+N DD + + G + GV++ + HL+ + QG + V
Sbjct: 204 --ENAKVCVVNADDALTMP-IRGADERCVSFGVNMGDY--------HLN-HQQGETWLRV 251
Query: 853 IGADHASVRS-PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQD 1029
G +V+ L G+ N N LA + A + L+T + R + +
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHN 311
Query: 1030 GQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGE 1149
G A + L+ L HV G L + G G+
Sbjct: 312 GVRWINDSKATNVGSTEAALNGL--HVDGTLHLLLGGDGK 349
>gi|4377219|gb|AAD19037| (AE001670) Muramoyl-DAP Ligase [Chlamydia
pneumoniae]
Length = 447
Score = 45.7 bits (106), Expect = 0.001
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 5/226 (2%)
Frame = +1
Query: 55 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 234
D I+G +DS++VQPGD G F++ A GAVA + QG S
Sbjct: 23 DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDY-QGDSFGLE 81
Query: 235 AIAVHGLRARL----GAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSA 402
I V ++ L + F G T+VG+TG+ GKT+T +
Sbjct: 82 LIRVDDTKSALQEAGSNQCNLFQG------TLVGITGSVGKTTTKEF------------- 122
Query: 403 TCGTLGVGLY-DQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVH 579
T+ +Y P + + L + L +A+ DE + M VS Q + V
Sbjct: 123 -SKTILSSIYKTHASPKSYNSQLTVPLSLLMAE-GDEDVMILEMGVSEPGNMQDLLRIVQ 180
Query: 580 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRL 732
++ V T++ H H K + + Q + ++ D P+ L L
Sbjct: 181 PEIAVITHINDQHA-MHFPQGIQEILKEKSYILQKSKLQLLPKDSPYYLDL 230
>gi|42046|emb|CAA35611| (X17609)
UDP-N-acetylmuramoyl-L-alanine:D-gluta ligase (AA 1-438)
[Escherichia coli]
Length = 438
Score = 44.9 bits (104), Expect = 0.002
Identities = 33/133 (24%), Positives = 60/133 (44%), Gaps = 1/133 (0%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
+V +TG+NGK++ L+ + GV G +G+ P ++
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL-------------PALM------- 146
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD-YHGDMEHYGAAKARLF 672
L D+ + +E+SS L+ + N+T DH+D Y ++ Y AAK R++
Sbjct: 147 -LLDDECELYVLELSSFQLE--TTSSLQAVTATILNVTEDHMDRYPFGLQQYRAAKLRIY 203
Query: 673 AHQDVQAAVINVDD 714
++ + V+N DD
Sbjct: 204 --ENAKVCVVNADD 215
>gi|6458474|gb|AAF10342.1|AE001931_13 (AE001931)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
radiodurans]
Length = 433
Score = 43.8 bits (101), Expect = 0.004
Identities = 38/123 (30%), Positives = 51/123 (40%)
Frame = +1
Query: 7 RSMPLAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 186
RS+P A + PQAR L DSRE P HG F+E A A GA
Sbjct: 5 RSVPFAAQIH--PQARPA--RRLTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPF 60
Query: 187 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 366
+L + P+ V V D GA+ ++ +VG+TG+ GKT+
Sbjct: 61 VLTDLDVPRAVRVDDAR----------GALFAWARSERAKNPLVVGITGSAGKTTAKSYA 110
Query: 367 AQA 375
A A
Sbjct: 111 AAA 113
>gi|3329220|gb|AAC68353.1| (AE001348)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Chlamydia trachomatis]
Length = 416
Score = 43.8 bits (101), Expect = 0.004
Identities = 33/117 (28%), Positives = 50/117 (42%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
+ +TGT GKT+T+ L + G+ + G +G+ + D G P V + Q
Sbjct: 104 LAITGTTGKTTTILFLEYLFKRSGIPAFAMGNVGIPILD-----GMQNPGVRIVEISSFQ 158
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
L D+ E S L G + N++ +HLDYHG+ Y AK L
Sbjct: 159 LADQ-------EKSYPVLSGGMI----------LNISDNHLDYHGNFSEYFQAKQNL 198
>gi|4980729|gb|AAD35322.1|AE001707_9 (AE001707)
UDP-N-acetylmuramate--alanine ligase [Thermotoga
maritima]
Length = 457
Score = 43.4 bits (100), Expect = 0.005
Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 8/257 (3%)
Frame = +1
Query: 325 VTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTT---PLVLQLHQCLA 495
VTGT+GKT+T ++A L R + LG G+ D + + P+V +L +
Sbjct: 107 VTGTDGKTTTTAMVAHVLKHL--RKSPTVFLG-GIMDSLEHGNYEKGNGPVVYELDE--- 160
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGD-MEHYGAAKARLF 672
++ E S + L + TN DHL+ +G+ + Y +A ++
Sbjct: 161 ------SEEFFSEFSPNYL-------------IITNARGDHLENYGNSLTRYRSAFEKIS 201
Query: 673 AHQDVQAAVINVDDPFGLRL---LHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGF 843
+ D+ V +D L G+ KG + + + M +
Sbjct: 202 RNTDL--VVTFAEDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKN--------- 250
Query: 844 DLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMN-RLG 1020
G + ++ + G NV N LAV + +L Y L+ + L R +H R +
Sbjct: 251 ----GKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFH 306
Query: 1021 GQDGQPXXXXDYAHTPDALGQVLSS 1095
+ DYAHTPD + +L +
Sbjct: 307 DPETNIYVIDDYAHTPDEIRNLLQT 331
>gi|6458326|gb|AAF10205.1|AE001920_8 (AE001920)
UDP-N-acetylmuramate--alanine ligase [Deinococcus
radiodurans]
Length = 482
Score = 43.4 bits (100), Expect = 0.005
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 6/270 (2%)
Frame = +1
Query: 253 LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLY 432
+R R+ + + PS VGV GT+GKT+T ++A A + G+ + V +
Sbjct: 119 VRPRMALLGELLAAGPS-----VGVIGTHGKTTTTSMIAVAMYGAGLDPSAFVGGNVPEF 173
Query: 433 DQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTR 612
TG T P V ++ DE + A+ + + VFTN
Sbjct: 174 GGNARTG-TGPFVAEV--------DESDRGFAL--------------LGCETAVFTNAED 210
Query: 613 DHL-----DYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSV 777
DH+ Y +E A AR A V+ D GL L A+ G S
Sbjct: 211 DHVGGELATYWSTVEEQHAGFARFVAQ---SGRVLFCADWPGLDTLCSGAREQLTYGQS- 266
Query: 778 CGHTDADVMAQHLSLNLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYA 954
AD A ++ + G FD+ G R L G NV N LA V +
Sbjct: 267 ---AGADYRAVNVRPDESGTTFDVEFRGERLGEARVSLPGTHNVLNGLAALAVTHLYGGD 323
Query: 955 LSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAH 1062
A L+ GR + G+ G DYAH
Sbjct: 324 FDRAARALADFHG-PGRRWEIKGERGGALVVDDYAH 358
>gi|2981818|pdb|1UAG| Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate
Ligase
Length = 437
Score = 43.4 bits (100), Expect = 0.005
Identities = 62/278 (22%), Positives = 111/278 (39%), Gaps = 2/278 (0%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
+V +TG+NGK++ L+ + GV G +G+ P ++
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL-------------PALM------- 145
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD-YHGDMEHYGAAKARLF 672
L D+ + +E+SS L+ + N+T DH+D Y ++ Y AA R++
Sbjct: 146 -LLDDECELYVLELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIY 202
Query: 673 AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 852
++ + V+N DD + + G + GV++ + HL+ + QG + V
Sbjct: 203 --ENAKVCVVNADDALTMP-IRGADERCVSFGVNMGDY--------HLN-HQQGETWLRV 250
Query: 853 IGADHASVRS-PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQD 1029
G +V+ L G+ N N LA + A + L+T + R + +
Sbjct: 251 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHN 310
Query: 1030 GQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGE 1149
G A + L+ L HV G L + G G+
Sbjct: 311 GVRWINDSKATNVGSTEAALNGL--HVDGTLHLLLGGDGK 348
>gi|2149895 (U94706) D-glutamic acid adding enzyme [Staphylococcus
aureus]
Length = 450
Score = 42.6 bits (98), Expect = 0.008
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 3/165 (1%)
Frame = +1
Query: 187 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 366
I+ P P VS+ D A+ + L + + + ++ VTGTNGKT+ L+
Sbjct: 75 IVKNPGIPYTVSIIDEAV-----KRGLKILTEVELSYLISEAPIIAVTGTNGKTTVTSLI 129
Query: 367 AQAW---HCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 537
+ G S G + + +V PT + + E+
Sbjct: 130 GDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY----------------------LVTEL 167
Query: 538 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ 681
SS L ++ + + TN+ HLDYH ++E+Y AK +++ +Q
Sbjct: 168 SSFQL--LGIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQ 213
>gi|3122409|sp|O33595|MURD_STAAU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|2271510 (AF009671)
UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase;
MurD [Staphylococcus aureus]
Length = 449
Score = 42.6 bits (98), Expect = 0.008
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 3/165 (1%)
Frame = +1
Query: 187 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 366
I+ P P VS+ D A+ + L + + + ++ VTGTNGKT+ L+
Sbjct: 75 IVKNPGIPYTVSIIDEAV-----KRGLKILTEVELSYLISEAPIIAVTGTNGKTTVTSLI 129
Query: 367 AQAW---HCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 537
+ G S G + + +V PT + + E+
Sbjct: 130 GDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY----------------------LVTEL 167
Query: 538 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ 681
SS L ++ + + TN+ HLDYH ++E+Y AK +++ +Q
Sbjct: 168 SSFQL--LGIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQ 213
>gi|2463563|dbj|BAA22556| (AB007500) MURD [Staphylococcus aureus]
Length = 269
Score = 42.6 bits (98), Expect = 0.008
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 3/165 (1%)
Frame = +1
Query: 187 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 366
I+ P P VS+ D A+ + L + + + ++ VTGTNGKT+ L+
Sbjct: 75 IVKNPGIPYTVSIIDEAV-----KRGLKILTEVELSYLISEAPIIAVTGTNGKTTVTSLI 129
Query: 367 AQAW---HCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 537
+ G S G + + +V PT + + E+
Sbjct: 130 GDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY----------------------LVTEL 167
Query: 538 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ 681
SS L ++ + + TN+ HLDYH ++E+Y AK +++ +Q
Sbjct: 168 SSFQL--LGIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQ 213
>gi|3183540|sp|P40778|MURC_BACSU UDP-N-ACETYLMURAMATE--ALANINE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE) >gi|2293216
(AF008220) putative UDP-N-acetylmuramate-alanine ligase
[Bacillus subtilis] >gi|2635463|emb|CAB14957| (Z99119)
UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis]
Length = 432
Score = 41.0 bits (94), Expect = 0.024
Identities = 67/262 (25%), Positives = 93/262 (34%), Gaps = 2/262 (0%)
Frame = +1
Query: 283 RFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTT 462
+F G + T V VTG +GKTST LLA H + T +G G TG
Sbjct: 92 KFLGDYMKKFTSVAVTGAHGKTSTTGLLA---HVIQNAKPTSFLIGDG-------TG--- 138
Query: 463 PLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDME 642
E A E H L D + TN+ DH DY ++
Sbjct: 139 ---------QGNENSEYFVFEACEYRRHFLSY------QPDYAIMTNIDFDHPDYFSSID 183
Query: 643 HYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCG-HTDADVMAQHLS 819
A + V +I D L +H V V G + D A+++
Sbjct: 184 DVFDAFQEMAL--QVNKGIIACGDDEHLPKIHA------NVPVVYYGTGEENDFQARNIV 235
Query: 820 LNLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI 996
+ +G FD+ + + + P G NV N LAV + + S I L + +
Sbjct: 236 KSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGV 295
Query: 997 HGRMNRLGGQDGQPXXXXDYAHTP 1068
R N Q G DYAH P
Sbjct: 296 KRRFNE--KQLGDQVLIDDYAHHP 317
>gi|556014 (L31845) UDP-N-acetyl muramate-alanine ligase [Bacillus
subtilis]
Length = 348
Score = 41.0 bits (94), Expect = 0.024
Identities = 67/262 (25%), Positives = 93/262 (34%), Gaps = 2/262 (0%)
Frame = +1
Query: 283 RFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTT 462
+F G + T V VTG +GKTST LLA H + T +G G TG
Sbjct: 8 KFLGDYMKKFTSVAVTGAHGKTSTTGLLA---HVIQNAKPTSFLIGDG-------TG--- 54
Query: 463 PLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDME 642
E A E H L D + TN+ DH DY ++
Sbjct: 55 ---------QGNENSEYFVFEACEYRRHFLSY------QPDYAIMTNIDFDHPDYFSSID 99
Query: 643 HYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCG-HTDADVMAQHLS 819
A + V +I D L +H V V G + D A+++
Sbjct: 100 DVFDAFQEMAL--QVNKGIIACGDDEHLPKIHA------NVPVVYYGTGEENDFQARNIV 151
Query: 820 LNLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI 996
+ +G FD+ + + + P G NV N LAV + + S I L + +
Sbjct: 152 KSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGV 211
Query: 997 HGRMNRLGGQDGQPXXXXDYAHTP 1068
R N Q G DYAH P
Sbjct: 212 KRRFNE--KQLGDQVLIDDYAHHP 233
>gi|4406514|gb|AAD20011| (AF123319)
UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase MurE [Streptomyces coelicolor]
Length = 142
Score = 40.6 bits (93), Expect = 0.032
Identities = 23/62 (37%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Frame = +1
Query: 16 PLAQLLPDIPQAR---DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 186
PLA+L + A I+G+ DSR V+PGD HG F+ A GA A
Sbjct: 61 PLAELADQLGVAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 120
Query: 187 ILFEP 201
+L +P
Sbjct: 121 VLTDP 125
>gi|4455041|gb|AAD21045| (AF116463) unknown [Streptomyces
lincolnensis]
Length = 822
Score = 39.9 bits (91), Expect = 0.055
Identities = 42/132 (31%), Positives = 51/132 (37%), Gaps = 24/132 (18%)
Frame = -3
Query: 454 NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPP 275
+P + P+R H A R H R AP + GR PP
Sbjct: 487 HPRIRPERDRVHPA--RRHAGRRGQRPRAPAV---------------------GREGPPP 523
Query: 274 SHPNAHANHALQS----PHPAPTPPA-----VRAAQTKLQQHLWHTHPQ------*NTTR 140
SHP A H P PAP P +R L H T PQ + R
Sbjct: 524 SHPVVQAAHGAHRSRLLPRPAPRRPTGRHQRLRRRPPPLGHHRPSTSPQARQPRRPHRQR 583
Query: 139 ERRTLQP---------RQTHHPAAPHGYPSPNQRSR 59
+ R LQP R+ HHP P+P R
Sbjct: 584 QTRGLQPRRKDPGLGLRRPHHPRLGRHRPAPRHPRR 619
>gi|1922269|emb|CAA71945| (Y11066) klu [Drosophila melanogaster]
Length = 750
Score = 39.9 bits (91), Expect = 0.055
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Frame = -3
Query: 283 DPPSHPNAHANHALQSPHPAPT-PPAVRAAQTKLQQHLWHTHPQ*NTTRERRT----LQ- 122
+PP P H H L PHP P PP + QQ+L H +P + + LQ
Sbjct: 20 NPPQQPPQHHPHHLPLPHPPPAPPPQLLNFNHHQQQYLPHMYPAAAAAAQSHSHYGGLQY 79
Query: 121 --PRQTHHPAAPHGYPS--PNQRSRHHALAEYRAIAAPMA*NAS 2
P H PH + P S H A A+AA +A N S
Sbjct: 80 PHPHALQHQHHPHQHQHHLPLALSLHQQAAAAAAVAAAVATNHS 123
>gi|3868935|dbj|BAA34293| (AB015023) MurC [Corynebacterium glutamicum]
Length = 486
Score = 39.5 bits (90), Expect = 0.072
Identities = 78/281 (27%), Positives = 113/281 (39%), Gaps = 26/281 (9%)
Frame = +1
Query: 292 GHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLV 471
G + T V + GT+GKTST + A G+ + +G
Sbjct: 113 GELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPS----FAIG--------------- 153
Query: 472 LQLHQCLAQLRDEGAQAV--AMEVSSHALDQGRVDGVHY--DVVVFTNLTRDHLDYHGDM 639
QL G A EV D+ + Y +V V TN+ DHLD+
Sbjct: 154 -------GQLNKAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFFKTP 206
Query: 640 EHYGAA----KARLFAHQDVQAAVINVDDPFGLRL-LHGLAKGMRRVGV----SVCGHTD 792
E Y R+ + + V+ ++DP L + KG++ VG +V H +
Sbjct: 207 EAYFQVFDDFAGRITPNGKL---VVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263
Query: 793 ADVMAQHLSLNLQGIGFDLVIGAD--HASVRSPLMGRFNVDN----LLA---VAGVLYAL 945
MA + + G I D SV + G V N LLA V G + L
Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323
Query: 946 NYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHV----C 1113
LS+ + V HG + GG+ DYAH P + VLS+ + V
Sbjct: 324 VEGLSDFSGVRRRFE-FHGAIE--GGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380
Query: 1114 GRLICVF 1134
GR+I F
Sbjct: 381 GRVIVAF 387
>gi|3329218|gb|AAC68351.1| (AE001348)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase
[Chlamydia trachomatis]
Length = 450
Score = 38.3 bits (87), Expect = 0.16
Identities = 30/97 (30%), Positives = 47/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 64 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAIL----FEPPAPQGVSVPD 231
++G+ +DSR V PGD G F++ A GAVA + + P+ G+ +
Sbjct: 25 VTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPS-YGLQLLR 83
Query: 232 GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTST 354
A LRA F+G ++G+TG+ GKT+T
Sbjct: 84 VADPREALRAAGRTQGALFYGE------VIGITGSVGKTTT 118
>gi|103364|pir||B36664 S59/4 homeotic protein - fruit fly
(Drosophila melanogaster)
Length = 659
Score = 38.3 bits (87), Expect = 0.16
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -3
Query: 283 DPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHH 104
+P HP HA Q PH P + AAQ QH+ H H Q + P H
Sbjct: 172 EPLQHP--HAALLQQHPHLLQNPQFLAAAQ----QHMHHQHHQ----HHQHPAHPHSHQH 221
Query: 103 PAA-PHGYPSPNQRSRHHALAEYRAIAAP 20
P PH +P P+ + H A + AP
Sbjct: 222 PHPHPHPHPHPHPSAVFHLRAPSSSSTAP 250
>gi|1173846 (U39455) envelope glycoprotein precursor [Crimean-Congo
hemorrhagic fever virus]
Length = 1683
Score = 37.9 bits (86), Expect = 0.21
Identities = 39/116 (33%), Positives = 49/116 (41%), Gaps = 14/116 (12%)
Frame = -3
Query: 388 LDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPPSHPNAHANH--ALQSPHPA--- 224
L N+ P+ Q T HP + + G D S P+ A SPHP
Sbjct: 128 LPNSPSTPSTPQDTH------HPVRNLLSVTSPGPDETSTPSGTGKESSATSSPHPVSNR 181
Query: 223 -PTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTL--QPRQTHHP--AAP----HGYPSPN 71
PTPPA T+ H HP+ T L P Q HP A P +PSP
Sbjct: 182 PPTPPATAQGPTENDSHNATEHPESLTQSATPGLMTSPTQIVHPQSATPITVQDTHPSPT 241
Query: 70 QRSRHHALAE 41
RS+ + E
Sbjct: 242 NRSKRNLKME 251
>gi|3914074|sp|O51532|MURD_BORBU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|2688512 (AE001160)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
[Borrelia burgdorferi]
Length = 451
Score = 37.9 bits (86), Expect = 0.21
Identities = 33/129 (25%), Positives = 56/129 (42%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
+V VTGT GK++ V LL QA G +GV P F L
Sbjct: 113 IVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS------PLSFFDQL--------- 157
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 675
+G + +E+SS L ++ + + + TN+ DH +Y+ + + Y K+++F
Sbjct: 158 ----DGKSPLILELSSWQLQS--LENFNPIISIITNVYNDHQNYYLNFDDYIIDKSKIFV 211
Query: 676 HQDVQAAVI 702
+Q +I
Sbjct: 212 NQTSGIVII 220
>gi|3123061|sp|O26631|Y531_METTH HYPOTHETICAL PROTEIN MTH531
>gi|2621605 (AE000836) UDP-N-acetylmuramyl tripeptide
synthetase related protein [Methanobacterium
thermoautotrophicum]
Length = 312
Score = 37.9 bits (86), Expect = 0.21
Identities = 52/189 (27%), Positives = 76/189 (39%), Gaps = 11/189 (5%)
Frame = +1
Query: 178 AVAILFEPPAPQGVSVP----DGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGK 345
A A+ P PQ V + VH + +G + G P MVGV GT+GK
Sbjct: 72 ADAVFISPNIPQDAPVRKMVREAGDLVHITTSDIGRTLNELIGLP-----MVGVAGTDGK 126
Query: 346 TSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAV 525
T+T ++ H L R T L D +V G +V
Sbjct: 127 TTTTNMID---HILSSRYRTVSF--SSLQDSLVIEGLVELVV-------------NGDID 168
Query: 526 AMEVSSHALDQGRV---DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA- 693
+++ L G + +G+ V TNLT DH+D + +Y R F+ +D+ A
Sbjct: 169 DRDLAVFELPHGTIRMAEGLELSAGVVTNLTPDHMD---EFSNYDEYIERNFSIKDLMAP 225
Query: 694 ---AVINVDDPFGLRLLHGL 744
+ DDP LL L
Sbjct: 226 GGVLALCGDDPVISSLLDDL 245
>gi|5689419|dbj|BAA82993.1| (AB028964) KIAA1041 protein [Homo
sapiens]
Length = 622
Score = 37.5 bits (85), Expect = 0.28
Identities = 38/123 (30%), Positives = 49/123 (38%), Gaps = 5/123 (4%)
Frame = -3
Query: 430 TNPHR---ACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPPSHPNA 260
T+PH + SH + L N + ++AQ + H Q HP S PP P+
Sbjct: 340 THPHSNQSSLSNSHGSGL-NTTGSNSVAQVSLSH-PQMHPQPSP--------HPPHRPHG 389
Query: 259 HANHALQSPHPAPTPPAVRAAQTKLQQH--LWHTHPQ*NTTRERRTLQPRQTHHPAAPHG 86
H +SPHPAP P QQH L HPQ + + P H
Sbjct: 390 LPQHPQRSPHPAPHP----------QQHSQLQSPHPQHPSPHQHIQHHPNHQHQTLTHQA 439
Query: 85 YPSPNQRS 62
P P Q S
Sbjct: 440 PPPPQQVS 447
>gi|4467980|emb|CAB37925| (AJ133272) atrophin-1 [Pongo pygmaeus]
Length = 291
Score = 37.5 bits (85), Expect = 0.28
Identities = 30/91 (32%), Positives = 41/91 (44%), Gaps = 6/91 (6%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLW-HTHPQ*NT 146
P S A +G PP P A + HP P PP+ AQ+ W H H
Sbjct: 77 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPST-GAQSAAHPPAWTHHHHHQQQ 133
Query: 145 TRERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
++++ Q +Q HH P P +P P + S HHA
Sbjct: 134 QQQQQQQQQQQQHHGSSGPPPPGAFPHPLEGGSSHHA 170
>gi|2960136|emb|CAA18034.1| (AL022121) hypothetical protein Rv3712
[Mycobacterium tuberculosis]
Length = 413
Score = 37.5 bits (85), Expect = 0.28
Identities = 44/132 (33%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = +1
Query: 319 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 498
V VTGTNGK++T ++ A A GTLG V + L LA
Sbjct: 54 VVVTGTNGKSTTTRMTA----------AALGTLGA-----VATNAEGANMDAGLVAALAA 98
Query: 499 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHY-GAAKARLFA 675
RD A+ +EV + D V VVV NL+RD LD G++ +A L
Sbjct: 99 HRD--AELAVLEVDEMHVPH-ISDAVDPAVVVLLNLSRDQLDRVGEINVIERTLRAGLAR 155
Query: 676 HQDVQAAVINVDD 714
H D V N DD
Sbjct: 156 HPDA-VVVANCDD 167
>gi|6634121|emb|CAB64385.1| (AJ252082) BAB-I protein [Drosophila
melanogaster]
Length = 979
Score = 37.5 bits (85), Expect = 0.28
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTP-PAVRAAQTKLQQHLWHTHPQ*NT 146
PP SS +T G + A HAL+ P PA TP P R+++ Q PQ
Sbjct: 340 PPMSSGSTVGA-----TRRLETAIHALEMPSPAATPGPLSRSSRPHSQS------PQQQQ 388
Query: 145 TRERRTLQ---PRQTHHPAAPHGYPSPNQRSRHH 53
+++ L P HH A+P +PS S HH
Sbjct: 389 AQQQGQLPLPLPLHPHHHASPAPHPSQTAGSAHH 422
>gi|4154982 (AE001479) UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE
LIGASE [Helicobacter pylori J99]
Length = 422
Score = 37.1 bits (84), Expect = 0.36
Identities = 29/119 (24%), Positives = 56/119 (46%)
Frame = +1
Query: 313 TMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCL 492
TM+ ++GTNGKT+T ++L ++ + G +G TPL+
Sbjct: 96 TMISISGTNGKTTTTEMLTTLLE--DFKAVSGGNIG-------------TPLI------- 133
Query: 493 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
+L ++ + +E SS +L + + + + N+ DHL +H + E+Y AK ++
Sbjct: 134 -ELFEKRSPLWVLETSSFSLHY--TNKAYPLIYLLINVEADHLTWHCNFENYLNAKLKV 189
>gi|3980124|emb|CAA80468| (Z22814) unnamed protein product [Homo
sapiens]
Length = 127
Score = 37.1 bits (84), Expect = 0.36
Identities = 26/77 (33%), Positives = 37/77 (47%), Gaps = 8/77 (10%)
Frame = -3
Query: 280 PPSHPNAHANHALQSPHPAPTPPAVRAAQT---KLQQHLWHTHPQ*NTTRERRTLQPRQT 110
PP + AN + HP P PP+ A T + H H Q ++++ Q +Q
Sbjct: 14 PPPYGRLLAN---SNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQ 70
Query: 109 HH----PAAPHGYPSPNQ-RSRHHA 50
HH P P +P P + S HHA
Sbjct: 71 HHGNSGPPPPGAFPHPLEGGSSHHA 95
>gi|2547264 (U41628) syndecan-1 [Xenopus laevis]
Length = 604
Score = 37.1 bits (84), Expect = 0.36
Identities = 25/87 (28%), Positives = 38/87 (42%), Gaps = 13/87 (14%)
Frame = -3
Query: 313 SSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQ-------------TKLQQHL 173
+ P + S P+ N H +H PH TP A+ + + L +H
Sbjct: 325 AEPDVEVHHSTTPADMNKHHHHHHHHPHHHTTPEAITSVNEEIPHHVGDSTTPSDLNKHH 384
Query: 172 WHTHPQ*NTTRERRTLQPRQTHHPAAPHGYPSPNQRSRHH 53
H HP +TT E T HH +P+ ++HH
Sbjct: 385 HHHHPHHHTTSETTTSVDEVPHH---VDDSTTPSDLNKHH 421
>gi|123395|sp|P22807|HMN1_DROME HOMEOBOX PROTEIN NK-1 (S59/2)
>gi|103363|pir||A36664 S59/2 homeotic protein - fruit
fly (Drosophila melanogaster) >gi|8531|emb|CAA39067|
(X55393) S59 protein [Drosophila melanogaster]
>gi|227464|prf||1704199A S59 homeobox gene [Drosophila
sp.]
Length = 659
Score = 36.7 bits (83), Expect = 0.47
Identities = 28/88 (31%), Positives = 35/88 (38%), Gaps = 3/88 (3%)
Frame = -3
Query: 283 DPPSHPNAHANHALQSPHPAPTPPAVRAAQTKL--QQHLWHTHPQ*NTTRERRTLQPRQT 110
+P HP HA Q PH P + AAQ + QH H HP P
Sbjct: 172 EPLQHP--HAALLQQHPHLLQNPQFLAAAQQHMHHHQHQHHQHP----------AHPHSH 219
Query: 109 HHP-AAPHGYPSPNQRSRHHALAEYRAIAAP 20
HP PH +P P+ + H A + AP
Sbjct: 220 QHPHPHPHPHPHPHPSAVFHLRAPSSSSTAP 250
>gi|1732417 (U47924) DRPLA [Homo sapiens]
Length = 1190
Score = 36.7 bits (83), Expect = 0.47
Identities = 30/91 (32%), Positives = 40/91 (42%), Gaps = 9/91 (9%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTK----LQQHLWHTHPQ 155
P S A +G PP P A + HP P PP+ A T H H Q
Sbjct: 430 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQ 487
Query: 154 *NTTRERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
++++ Q +Q HH P P +P P + S HHA
Sbjct: 488 QQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHA 527
>gi|2984290 (AE000771) UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Aquifex aeolicus]
Length = 415
Score = 36.7 bits (83), Expect = 0.47
Identities = 54/260 (20%), Positives = 107/260 (40%), Gaps = 2/260 (0%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
++ +TGT+GK++T +L + +D+V G + + +
Sbjct: 86 VIAITGTDGKSTTTRLTY--------------LILKKFFDEVFEAG-------NIGKPFS 124
Query: 496 QLRDEGAQAVA-MEVSSHALDQGR-VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
++ E + +A +EVSS QG+ + ++ F + + DHLD+H +E Y +K R+
Sbjct: 125 EVVLENPEGIAVLEVSSF---QGKTLKTFRPNIGAFISFSVDHLDWHPSIEDYLKSKYRI 181
Query: 670 FAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDL 849
F +Q + +I D L++ + K R V+ L +N + +
Sbjct: 182 FENQTEEDFLILND------LVYEIKKTPSRA---------RKVLFSELYINSDSVFYKD 226
Query: 850 VIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQD 1029
+ + +++ + G NV N + + L + V+ R + R+ LG +
Sbjct: 227 IRLFNPKNLK--IRGLHNVYNASVASLIALTLGLKPEDFEEVIYEFRGLPHRLEFLGNFN 284
Query: 1030 GQPXXXXDYAHTPDALGQVLSS 1095
G + TP AL L +
Sbjct: 285 GVEVYNDSKSTTPHALMHALKT 306
>gi|6119851|gb|AAF04257.1| (AF139114) subtilisin-like serine
protease [Neospora caninum]
Length = 865
Score = 36.7 bits (83), Expect = 0.47
Identities = 32/104 (30%), Positives = 42/104 (39%), Gaps = 1/104 (0%)
Frame = -3
Query: 469 PAAS*NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGR 290
P AS PPDR +PH R + +P+P Q H + +PP +SP
Sbjct: 561 PEASPPESSPPDRQHPHPHPPRPNPPEASPPEPSPPNWQHPHPHPPRPNPPEASP----- 615
Query: 289 GSDPPSHPNAHANHALQSPH-PAPTPPAVRAAQTKLQQHLWHTHP 158
PS PN H PH P P PP ++ + H HP
Sbjct: 616 --PEPSPPNWQHPH----PHPPRPNPPGASPPESS-PPNWQHPHP 653
Score = 34.4 bits (77), Expect = 2.4
Identities = 30/104 (28%), Positives = 43/104 (40%), Gaps = 6/104 (5%)
Frame = -3
Query: 469 PAAS*NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGR 290
P AS PP+ +PH R + +P+P Q H + +PP +SP
Sbjct: 586 PEASPPEPSPPNWQHPHPHPPRPNPPEASPPEPSPPNWQHPHPHPPRPNPPGASPPE--- 642
Query: 289 GSDPPS--HPNAHANH----ALQSPHPAPTPPAVRAAQTKLQQHLWHTHP 158
S PP+ HP+ H P +P P +Q H +H HP
Sbjct: 643 -SSPPNWQHPHPHPPRPNPPEASPPQSSPPEPQRPFSQWPHTPHFFHYHP 691
>gi|1698726 (U69551) histidine-rich protein II [Plasmodium
falciparum]
Length = 309
Score = 36.4 bits (82), Expect = 0.62
Identities = 33/130 (25%), Positives = 43/130 (32%)
Frame = -3
Query: 421 HRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPPSHPNAHANHAL 242
H A H +A A T H H + ATD + +H A A+HA
Sbjct: 181 HHAADAHHATDAHHAHHAADARHATDAH----HAADAHHATDAHHA-ADAHHAADAHHAT 235
Query: 241 QSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAAPHGYPSPNQRS 62
+ H A A A H H + T HH AA H + +
Sbjct: 236 DAHHAADAHHATDAHHAADAHHAADAH---HATDAHHAHHAADAHHAAAHHATDAHHATD 292
Query: 61 RHHALAEYRA 32
HHA A + A
Sbjct: 293 AHHAAAHHEA 302
>gi|2623666 (AF030429) dentatorubro-pallidoluysian atrophy protein
[Canis familiaris]
Length = 108
Score = 36.4 bits (82), Expect = 0.62
Identities = 27/92 (29%), Positives = 38/92 (40%), Gaps = 5/92 (5%)
Frame = -3
Query: 325 HPPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NT 146
HP P+ G+ + P P H +H Q P P +Q + QQ
Sbjct: 3 HPGPFPPSAGGQSTGHPPAPTHHHHHQQQQQQPPP------QSQQRPQQQ---------- 46
Query: 145 TRERRTLQPRQTHH----PAAPHGYPSP-NQRSRHHA 50
++++ Q +Q HH P P YP P S HHA
Sbjct: 47 QQQQQQQQQQQQHHGSSGPPPPGAYPHPLESSSSHHA 83
>gi|2313605|gb|AAD07560.1| (AE000564)
UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD)
[Helicobacter pylori 26695]
Length = 422
Score = 36.4 bits (82), Expect = 0.62
Identities = 28/119 (23%), Positives = 56/119 (46%)
Frame = +1
Query: 313 TMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCL 492
T++ ++GTNGKT+T ++L ++ + G +G TPL+
Sbjct: 96 TIISISGTNGKTTTTEMLTMLLE--DFKAVSGGNIG-------------TPLI------- 133
Query: 493 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
+L ++ + +E SS +L + + + + N+ DHL +H + E+Y AK ++
Sbjct: 134 -ELFEKRSPLWVLETSSFSLHY--TNKAYPLIYLLINIEADHLTWHCNFENYLNAKLKV 189
>gi|4494984|gb|AAD21406.1| (AF083501) latent nuclear antigen [Macaca
mulatta rhadinovirus 17577]
Length = 448
Score = 36.0 bits (81), Expect = 0.81
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Frame = -3
Query: 475 AIPAAS*NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*--HPPWSSPA 302
A PA+ P PP PH S N +P+ + S+H PP S P
Sbjct: 130 ASPASHSPPPSPPSHPGPHSPAPPSSHNPSPNQQPSSFLQP--SHHDSPEPPEPPTSLPP 187
Query: 301 TDGRGSDPPSHPNAHANHALQSPHPAPTPP----AVRAAQTKLQQHLWHT-HP 158
D G PP P ++ QSP +P PP +A QQ + HT HP
Sbjct: 188 PDSPG--PPQSPTPTSSPPPQSPPDSPGPPQSPTPQQAPSPNTQQAVSHTDHP 238
>gi|4336734|gb|AAD17923| (AF104261) Pax transcription activation
domain interacting protein PTIP [Mus musculus]
Length = 1056
Score = 35.6 bits (80), Expect = 1.1
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Frame = -3
Query: 241 QSPHPAPTPPAVRAAQTKLQQHLWHT----------HPQ*NTTRERRTLQPRQTHHPAAP 92
Q P P P PP+ + Q ++ QH + HPQ R ++ LQP Q H
Sbjct: 433 QQPQPYPQPPSHQFPQ-QVHQHQFSQQQLQFPQQPLHPQQQLHRPQQQLQPFQQQHALQQ 491
Query: 91 HGYPSPNQRSRHHALAE 41
+ Q+ +HH LA+
Sbjct: 492 QLHQLQQQQLQHHQLAQ 508
>gi|1304439 (U27488) glycoprotein gX [Suid herpesvirus 1]
Length = 103
Score = 35.6 bits (80), Expect = 1.1
Identities = 28/92 (30%), Positives = 37/92 (39%)
Frame = -3
Query: 487 TDAVAIPAAS*NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSS 308
T A + ++S + PP P RAC + R +A P+P + W S SS
Sbjct: 1 TSAPSAASSSRSRPRPPTPPPPRRACRATSAPRSTSASPSPAWSSWAS----------SS 50
Query: 307 PATDGRGSDPPSHPNAHANHALQSPHPAPTPP 212
A+ R S P A A P P P PP
Sbjct: 51 CASIWRSSGPGPGTTATATW----PPPDPAPP 78
>gi|4490330|emb|CAB38612.1| (AL035656) splicing factor-like protein
[Arabidopsis thaliana]
Length = 2352
Score = 35.6 bits (80), Expect = 1.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 307 PATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQ 179
P TDG PSHP H ++ S PT P A+ KL++
Sbjct: 12 PGTDGSRMQTPSHPADHPSYTAPSNRNTPTVPTPEDAEAKLEK 54
>gi|2896841 (U93003) hunchback protein [Drosophila cyrtoloma]
>gi|2896846 (U93005) hunchback protein [Drosophila
disjuncta]
Length = 104
Score = 35.6 bits (80), Expect = 1.1
Identities = 23/71 (32%), Positives = 37/71 (51%)
Frame = -3
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAA 95
S+ N++A+ QSP P+P PP+ Q L+Q+L Q ++++ QP T AA
Sbjct: 35 SNSNSNASSPHQSPLPSPNPPSNTILQ--LEQYLKQQQQQQQQQQQQQQQQPMDTLCAAA 92
Query: 94 PHGYPSPNQRS 62
PS N ++
Sbjct: 93 MTPSPSNNDQN 103
>gi|1706519|sp|P54259|DRPL_HUMAN ATROPHIN-1
(DENTATORUBRAL-PALLIDOLUYSIAN ATROPHY PROTEIN)
>gi|862330|dbj|BAA06626| (D31840) DRPLA [Homo sapiens]
Length = 1185
Score = 35.2 bits (79), Expect = 1.4
Identities = 29/91 (31%), Positives = 39/91 (41%), Gaps = 5/91 (5%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 430 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH-QQQ 486
Query: 142 RERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
++++ Q +Q HH P P +P P + S HHA
Sbjct: 487 QQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHA 522
>gi|1732444|dbj|BAA07534| (D38529) DRPLA protein [Homo sapiens]
Length = 1182
Score = 35.2 bits (79), Expect = 1.4
Identities = 29/91 (31%), Positives = 39/91 (41%), Gaps = 5/91 (5%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 430 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH-QQQ 486
Query: 142 RERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
++++ Q +Q HH P P +P P + S HHA
Sbjct: 487 QQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHA 522
>gi|4503397|ref|NP_001931.1|| atrophin-1 >gi|915326 (U23851)
atrophin-1 [Homo sapiens]
Length = 1184
Score = 35.2 bits (79), Expect = 1.4
Identities = 29/91 (31%), Positives = 39/91 (41%), Gaps = 5/91 (5%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 429 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH-QQQ 485
Query: 142 RERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
++++ Q +Q HH P P +P P + S HHA
Sbjct: 486 QQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHA 521
>gi|1082343|pir||S50832 DRPLA protein - human
Length = 1184
Score = 35.2 bits (79), Expect = 1.4
Identities = 29/91 (31%), Positives = 39/91 (41%), Gaps = 5/91 (5%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 430 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH-QQQ 486
Query: 142 RERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
++++ Q +Q HH P P +P P + S HHA
Sbjct: 487 QQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHA 522
>gi|399911|sp|P18488|HMES_DROME EMPTY SPIRACLES HOMEOTIC PROTEIN
>gi|283663|pir||S22708 homeotic protein ems - fruit fly
(Drosophila melanogaster) >gi|8820|emb|CAA46985|
(X66270) ems W13 [Drosophila melanogaster]
Length = 497
Score = 35.2 bits (79), Expect = 1.4
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Frame = -3
Query: 322 PPWSSPATDGR-GSDPPSHPNAHANHALQSPHPA-------------PTPPAVRAAQTKL 185
PP + PAT PP H A H L PHP P P A Q L
Sbjct: 64 PPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQQQQQHLQAPHPHPHLSPAQQHVL 123
Query: 184 QQHLWHTHPQ*NTTRERRTLQP--RQTHHPAAPHGYPSPNQ 68
QHL H T + + +Q ++ HH AA SP Q
Sbjct: 124 HQHLLMQHQHPGTPKSHQDIQELLQRLHHNAAMASGLSPLQ 164
>gi|2429362 (AF020261) proline rich protein [Santalum album]
Length = 326
Score = 35.2 bits (79), Expect = 1.4
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = -3
Query: 385 DNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPPS--HPNAHANHALQSPHP-APTP 215
++A P+P+ + + P S+P TDG PP P+ SP P +P+P
Sbjct: 139 ESASPSPSPGPPAATPTPRPSSPTSTPPTDGETPRPPGPRSPSPSPGPPSCSPSPKSPSP 198
Query: 214 PAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAAPHGYPSPNQR 65
PA +++ + T P T R++ P P+ P PSP R
Sbjct: 199 PASSPPRSRPGPPDYTTSPSPPTP---RSVPPTPPASPSPPTAKPSPPSR 245
>gi|2896856 (U93009) hunchback protein [Drosophila lineosetae]
Length = 104
Score = 35.2 bits (79), Expect = 1.4
Identities = 22/71 (30%), Positives = 37/71 (51%)
Frame = -3
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAA 95
S+ N++A+ QSP P+P PP+ +L+Q+L Q ++++ QP T AA
Sbjct: 35 SNSNSNASSPHQSPLPSPNPPS--NTNLQLEQYLKQQQQQQQQQQQQQQQQPMDTLCAAA 92
Query: 94 PHGYPSPNQRS 62
PS N ++
Sbjct: 93 MTPSPSNNDQN 103
>gi|6554167|gb|AAD18135.2| (AF085746) zinc finger transcription
factor gli2 [Danio rerio]
Length = 1439
Score = 34.8 bits (78), Expect = 1.8
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = -3
Query: 310 SPATDGRGSDP--PSHP--NAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
SP G P P HP N H H L+S H +PT + AA+ L H H
Sbjct: 92 SPHAAATGESPFNPPHPYVNPHMEHYLRSVHSSPTLSMISAARGLSPAELTHEH-----L 146
Query: 142 RERRTLQPRQTHHPAAPHGYPSPNQRSRHHALAEYRA 32
+ER P P N +H +A +R+
Sbjct: 147 KERSLF--------GLPPPPPGANPSEYYHLIASHRS 175
>gi|5911292|gb|AAD55738.1|AF184227_1 (AF184227) tty [Drosophila
melanogaster]
Length = 970
Score = 34.8 bits (78), Expect = 1.8
Identities = 27/82 (32%), Positives = 36/82 (42%), Gaps = 3/82 (3%)
Frame = -3
Query: 277 PSH---PNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTH 107
P+H PN A A + A PP +AAQ + QQ Q ++ QP H
Sbjct: 515 PTHMTGPNNAAAVAAAANAAANMPPTTQAAQQQQQQQAQQQQQQ--AQQQLGGPQPIYCH 572
Query: 106 HPAAPHGYPSPNQRSRHHALAEYRA 32
HP H +P P+Q H+ A A
Sbjct: 573 HP-HQHPHPHPHQHPHSHSAAAVAA 596
>gi|2896836 (U93001) hunchback protein [Drosophila crassifemur]
Length = 99
Score = 34.8 bits (78), Expect = 1.8
Identities = 23/71 (32%), Positives = 37/71 (51%)
Frame = -3
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAA 95
S+ N +A+ QSP P+P PP+ ++ L+Q+L H Q +++ QP T AA
Sbjct: 34 SNSNRNASSPRQSPLPSPNPPS--SSNLHLEQYLKQQHQQ----HQQQQQQPMDTLCAAA 87
Query: 94 PHGYPSPNQRS 62
PS N ++
Sbjct: 88 MTPSPSNNDQN 98
>gi|1082604|pir||S53363 mucin 5AC (clone JER58) - human (fragment)
>gi|563377|emb|CAA84032| (Z34278) mucin [Homo sapiens]
Length = 279
Score = 34.8 bits (78), Expect = 1.8
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Frame = -2
Query: 1484 RTVSWADIAASTRLATSVSSNG*RTPATS*YRS*PLPAINTTSSXXXXXXXXXXXAERSR 1305
RT S + ++ TS +S TP P+P +TTSS + S
Sbjct: 31 RTTSAPKSSTTSAATTSTTSGPETTPR-------PVPTTSTTSSPTTSTTSAPTTSTTSA 83
Query: 1304 CTFTTLGRA----KPARMSATMPSPSSPRGLSSVTNTTSALLSAITAICERLPLSRSPPQ 1137
T +T A P ++T +P++ + +++TTSA ++ T+ P SP
Sbjct: 84 STTSTTSGAGTTPSPVPTTSTTSAPTTRTTSAPISSTTSATTTSTTSGPGTTP---SPVP 140
Query: 1136 PNTQIKRPHTWLLKLDNTCPSA 1071
+ P T T PSA
Sbjct: 141 TTSTTSAPTTSTTSGPGTTPSA 162
Score = 34.4 bits (77), Expect = 2.4
Identities = 55/270 (20%), Positives = 90/270 (32%), Gaps = 5/270 (1%)
Frame = -2
Query: 1439 TSVSSNG*RTPATS*YRS*PLPAINTTSSXXXXXXXXXXXAERSRCTFTTLG----RAKP 1272
TS +S TP+ P+P +TTS+ + S T +T +P
Sbjct: 6 TSTTSGPGTTPS-------PVPTTSTTSAPTTRTTSAPKSSTTSAATTSTTSGPETTPRP 58
Query: 1271 ARMSATMPSPSSPRGLSSVTNTTSALLSAITAICERLPLSRSPPQPNTQIKRPHTWLLKL 1092
++T SP++ + T+TTSA ++ T+ P S P T T +
Sbjct: 59 VPTTSTTSSPTTSTTSAPTTSTTSASTTSTTSGAGTTP-SPVPTTSTTSAPTTRTTSAPI 117
Query: 1091 DNTCPSASGVCA*SXXXTGCPS*PPKRFIRP*IGRNVDXXXXXXXXXXXXX*RTPATASR 912
+T + + T P P P T++
Sbjct: 118 SSTTSATTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSAVPTTSITSVPTTSTN 177
Query: 911 LSTLKRPIRGERTEA*SAPMTRSNPIP*RFRLRCCAITSASV*PHTLTP-TRRIPLAKPC 735
+ + T S P T +P+P + TSAS T P T P+
Sbjct: 178 SAPISSTTSATTTSRISGPETTPSPVP------TASTTSASTTSTTSGPGTTPSPVPTTS 231
Query: 734 NRRRPNGSSTLITAACTS*CANRRALAAP*CSMSP 630
P S+T + T+ + + P + SP
Sbjct: 232 TISVPTTSTTSASTTSTTSASTTSTTSGPGTTPSP 266
>gi|3004653 (AF017777) tweety [Drosophila melanogaster]
Length = 836
Score = 34.8 bits (78), Expect = 1.8
Identities = 27/82 (32%), Positives = 36/82 (42%), Gaps = 3/82 (3%)
Frame = -3
Query: 277 PSH---PNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTH 107
P+H PN A A + A PP +AAQ + QQ Q ++ QP H
Sbjct: 515 PTHMTGPNNAAAVAAAANAAANMPPTTQAAQQQQQQQAQQQQQQ--AQQQLGGPQPIYCH 572
Query: 106 HPAAPHGYPSPNQRSRHHALAEYRA 32
HP H +P P+Q H+ A A
Sbjct: 573 HP-HQHPHPHPHQHPHSHSAAAVAA 596
>gi|1703594 (U80439) coded for by C. elegans cDNA yk7c8.5; coded for
by C. elegans cDNA yk133b3.5; coded for by C. elegans
cDNA yk65a4.5; coded for by C. elegans cDNA yk7c8.3;
coded for by C. elegans cDNA CEESQ66F; coded for by C.
elegans cDNA yk65a4.3;...
Length = 1357
Score = 34.8 bits (78), Expect = 1.8
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Frame = -3
Query: 346 SYHWCQ*HPPWSSPATDGRGSDPPSHPNA-----HANHALQSPHPAPTPPAVRAAQTKLQ 182
+YH+ Q H P G PP H NA + H P PP +A + +
Sbjct: 112 NYHYYQQHG--MMPPHPGHPGYPPQHMNAFSPGQYPGHQRPPGGPGGPPPGPQAMRAPMP 169
Query: 181 QHL---------W---------HTHPQ*NTTRERRTLQPRQTHHPAAPHGYPSPNQRSRH 56
QH+ W H H Q + + Q +Q P AP P+P S
Sbjct: 170 QHMQEMDEHQRQWYAHQQAAAAHHHAQQQAAAQAQAAQAQQASTP-APSTTPAPQAASSS 228
Query: 55 HALAEYRAIAAPMA*NAS 2
A A P +AS
Sbjct: 229 QAAPTSGANTQPATPSAS 246
>gi|119714|sp|P13983|EXTN_TOBAC EXTENSIN PRECURSOR (CELL WALL
HYDROXYPROLINE-RICH GLYCOPROTEIN) >gi|82169|pir||S06733
hydroxyproline-rich glycoprotein precursor - common
tobacco >gi|19867|emb|CAA32090| (X13885) extensin (AA
1-620) [Nicotiana tabacum]
Length = 620
Score = 34.8 bits (78), Expect = 1.8
Identities = 30/91 (32%), Positives = 38/91 (40%), Gaps = 7/91 (7%)
Frame = -3
Query: 325 HPPWSSPATDGRGSDPPSH--PNAHANHALQSP----HPAPTPPAVRAAQTKLQQHLWHT 164
H P S T RG PPSH P+ + H P P PTP ++
Sbjct: 148 HAPPSGGHTPPRGQHPPSHRRPSPPSRHGHPPPPTYAQPPPTP-------------IYSP 194
Query: 163 HPQ*NTTRERRTLQPRQTHHPAAP-HGYPSPNQRSRHH 53
PQ +QP T+ P P H P+P+ SR H
Sbjct: 195 SPQ---------VQPPPTYSPPPPTHVQPTPSPPSRGH 223
>gi|3876484|emb|CAB01755.1| (Z78543) predicted using Genefinder; cDNA
EST EMBL:M89101 comes from this gene; cDNA EST
EMBL:D27724 comes from this gene; cDNA EST EMBL:D27723
comes from this gene; cDNA EST EMBL:D34078 comes from
this gene; cDNA EST EMBL:D3...
Length = 1929
Score = 34.8 bits (78), Expect = 1.8
Identities = 29/109 (26%), Positives = 59/109 (53%), Gaps = 13/109 (11%)
Frame = -1
Query: 1044 HHRLPIL--TTQTIHPAMNRPQRRQHRSNLGQRVIQRIKNTCHRKQIINVETSHQR*THR 871
HH +P++ TT+ +N +H ++ + +K+ H I + T+H+ H
Sbjct: 762 HHYVPLVRKTTEDHQQKVNH----EHHFIPAEKKTEAVKDVVHEHHYIPL-TAHKTDEHN 816
Query: 870 SMIRTDDK---IKPDTLKIQTQMLRHHICIRVTTHA-----DSNPPH---PLGQTMQQTQ 724
I + +K + ++ +T++ RH+ + +TTH D+ H PLG ++Q++
Sbjct: 817 VNITREHHYIPLKTEQVQSKTEIERHNQYVPMTTHKETKSFDTGRSHSYIPLGGNVEQSK 876
Query: 723 TE 718
TE
Sbjct: 877 TE 878
>gi|3876483|emb|CAB01754.1| (Z78543) cDNA EST EMBL:C10430 comes from
this gene; cDNA EST yk410b2.5 comes from this gene; cDNA
EST EMBL:C12128 comes from this gene [Caenorhabditis
elegans]
Length = 1785
Score = 34.8 bits (78), Expect = 1.8
Identities = 29/109 (26%), Positives = 59/109 (53%), Gaps = 13/109 (11%)
Frame = -1
Query: 1044 HHRLPIL--TTQTIHPAMNRPQRRQHRSNLGQRVIQRIKNTCHRKQIINVETSHQR*THR 871
HH +P++ TT+ +N +H ++ + +K+ H I + T+H+ H
Sbjct: 762 HHYVPLVRKTTEDHQQKVNH----EHHFIPAEKKTEAVKDVVHEHHYIPL-TAHKTDEHN 816
Query: 870 SMIRTDDK---IKPDTLKIQTQMLRHHICIRVTTHA-----DSNPPH---PLGQTMQQTQ 724
I + +K + ++ +T++ RH+ + +TTH D+ H PLG ++Q++
Sbjct: 817 VNITREHHYIPLKTEQVQSKTEIERHNQYVPMTTHKETKSFDTGRSHSYIPLGGNVEQSK 876
Query: 723 TE 718
TE
Sbjct: 877 TE 878
>gi|6572317|emb|CAB62917.1| (AL080243) bA12M9.3 (E1A binding protein
p300) [Homo sapiens]
Length = 963
Score = 34.4 bits (77), Expect = 2.4
Identities = 40/146 (27%), Positives = 52/146 (35%), Gaps = 2/146 (1%)
Frame = -3
Query: 454 NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPP 275
+P++PP H C + L P+P ++ + H H P S A PP
Sbjct: 805 SPIMPPGSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPH----HTPPSIGA-----QQPP 855
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTL-QPRQTHHPA 98
A P P PTPPA+ Q H P+ T L Q Q PA
Sbjct: 856 ---------ATTIPAPVPTPPAMPPGP---QSQALHPPPRQTPTPPTTQLPQQVQPSLPA 903
Query: 97 APHG-YPSPNQRSRHHALAEYRAIAAPM 17
AP P RS+ A AP+
Sbjct: 904 APSADQPQQQPRSQQSTAASVPTPTAPL 931
>gi|2896826 (U92997) hunchback protein [Drosophila adiastola]
Length = 101
Score = 34.4 bits (77), Expect = 2.4
Identities = 23/71 (32%), Positives = 37/71 (51%)
Frame = -3
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAA 95
S+ N++A+ QSP P+P PP+ +L+Q+L H Q +++ QP T AA
Sbjct: 35 SNSNSNASSPHQSPLPSPNPPS--NTNLQLEQYLKHQQQQ---QQQQHQQQPMDTLCAAA 89
Query: 94 PHGYPSPNQRS 62
PS N ++
Sbjct: 90 MTPSPSNNDQN 100
>gi|188878 (M57417) mucin [Homo sapiens]
Length = 295
Score = 34.4 bits (77), Expect = 2.4
Identities = 23/80 (28%), Positives = 31/80 (38%)
Frame = -3
Query: 286 SDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTH 107
+DP +PN H +H P+P R + H H + NT R T TH
Sbjct: 115 TDP--NPNTHHHHHYGDPNPYTH----RHTDPNIDTHHHHHYGDPNTNTHRDTDPNHDTH 168
Query: 106 HPAAPHGYPSPNQRSRHHAL 47
H H Y PN + H +
Sbjct: 169 H---HHHYGDPNPNTHRHKI 185
>gi|4467439|emb|CAB37867| (AJ133273) atrophin-1 [Hylobates lar]
Length = 301
Score = 34.4 bits (77), Expect = 2.4
Identities = 29/91 (31%), Positives = 38/91 (40%), Gaps = 5/91 (5%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 92 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHAPASTHHH-----H 144
Query: 142 RERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
+++ Q +Q HH P P +P P + S HHA
Sbjct: 145 HQQQQQQQQQQHHGSSGPPPPGAFPHPLEGGSSHHA 180
>gi|4877961|gb|AAD31511.1| (AF142344) histidine-rich protein II
[Plasmodium falciparum]
Length = 339
Score = 34.0 bits (76), Expect = 3.1
Identities = 58/262 (22%), Positives = 76/262 (28%)
Frame = -3
Query: 817 SDAAPSHLHPCDHTR*LQPAASPWPNHATDADRMGXXXXXXXXXXPDARIGAPWPHRSAP 638
+DA +H H D A + +HA DA R A H +A
Sbjct: 91 ADAHHAH-HAADAHHAHHAAYAHHAHHAADAHRAHHASDAHHAADAHHAAYAHTAHHAAD 149
Query: 637 CHRDNQDDHASDW*TPPRHNAHRPHALDQGRAN*LXXXXXXXXXXXXXPDTDAVAIPAAS 458
H + HASD H A HA A+ DA A
Sbjct: 150 AHHAH---HASD----AHHAADAHHAAYAHHAHHAADAHHAHHASDAHHAGDAHHAAYAH 202
Query: 457 *NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDP 278
+ H A H +A A T H H + ATD +
Sbjct: 203 ----HAHHAADAHHAADAHHATDAHHAHHAADAHHATDAH----HAADAHHATDAHHA-A 253
Query: 277 PSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPA 98
+H A A+HA + H A A H H + T HH
Sbjct: 254 DAHHAADAHHATDAHHAADAHHATDVHHAADAHHAADAH---HATDAHHAHHAADAHHAP 310
Query: 97 APHGYPSPNQRSRHHALAEYRA 32
A H + + HHA A + A
Sbjct: 311 AHHATDAHHATDAHHAAAHHEA 332
>gi|4206763|gb|AAD11796.1| (AF104328) cell wall-plasma membrane
linker protein homolog [Arabidopsis thaliana]
Length = 306
Score = 34.0 bits (76), Expect = 3.1
Identities = 25/83 (30%), Positives = 31/83 (37%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
PP P T PP+ P+ H + P P PP+ TK P +T
Sbjct: 62 PPTPKPPTVKPHPKPPTKPHPHPKPPIVKP-PTKPPPSTPKPPTK---------PSPSTP 111
Query: 142 RERRTLQPRQTHHPAAPHGYPSP 74
+ T P T P PH PSP
Sbjct: 112 KPSTTKPPPST--PKPPHHKPSP 132
>gi|330130 (M17921) latency associated transcript (LAT) ORF-2
[Herpes simplex virus type 1]
Length = 305
Score = 34.0 bits (76), Expect = 3.1
Identities = 23/75 (30%), Positives = 33/75 (43%), Gaps = 12/75 (16%)
Frame = -3
Query: 316 WSSPATDGRGSDPPSHPNAHANHALQSPHP------------APTPPAVRAAQTKLQQHL 173
W +P G+ P+HP++HA ++P P PTP + L +
Sbjct: 16 WLTPEPAQHGTPTPTHPHSHAPPLPRTPTPTHPHSHAPPLPRTPTPTHPHSHAPPLPRTP 75
Query: 172 WHTHPQ*NTTRERRTLQPRQTHHPAAP 92
THP + RT P H A P
Sbjct: 76 TPTHPHSHAPPLPRTPTPTHPHSHAPP 102
>gi|79833|pir||JQ0405 hypothetical 119.5K protein (uvrA region) -
Micrococcus luteus
Length = 1106
Score = 34.0 bits (76), Expect = 3.1
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 26/75 (34%)
Frame = -3
Query: 292 RGSDPPSHPNAHA----------------NHALQSPHPAPTP-------PAVRAAQTKLQ 182
RG PP+H H A P PA P P RAA
Sbjct: 534 RGRHPPAHARGHGVLLGAAADGPGAADRGPGAQGDPGPAGVPAGRRPRVPQPRAAGRHPL 593
Query: 181 QHLWHTHPQ*NTTR---ERRTLQPRQTHHPAAPHGYPSPNQ 68
+ HP +T R RR L+PR+ H AP G P P++
Sbjct: 594 RRRGPAHPPGHTDRLRAGRRPLRPRRAVHRPAPAGQPPPHR 634
>gi|2896901 (U93027) hunchback protein [Drosophila dasycnemia]
Length = 102
Score = 34.0 bits (76), Expect = 3.1
Identities = 22/71 (30%), Positives = 36/71 (49%)
Frame = -3
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAA 95
S+ N++A+ QSP P+P PP+ +L+Q+L Q + ++ QP T AA
Sbjct: 33 SNSNSNASSPHQSPLPSPNPPS--HTNLQLEQYLKQQQQQQQQHQHQQQQQPMDTLCAAA 90
Query: 94 PHGYPSPNQRS 62
PS N ++
Sbjct: 91 MTPSPSNNDQN 101
>gi|422309|pir||S31781 HRPII protein - Plasmodium falciparum
>gi|9904|emb|CAA49542| (X69922) HRPII [Plasmodium
falciparum]
Length = 327
Score = 34.0 bits (76), Expect = 3.1
Identities = 33/133 (24%), Positives = 45/133 (33%), Gaps = 2/133 (1%)
Frame = -3
Query: 430 TNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*--HPPWSSPATDGRGSDPPSHPNAH 257
T+ H A H + +A A T H H + ATD + +H
Sbjct: 190 TDAHHAHHAADAHHATDAHHAADAHHATDAHHAADAHHAADAHHATDAHHA-ADAHHATD 248
Query: 256 ANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAAPHGYPS 77
A+HA + H A A A H H + T HH AA H +
Sbjct: 249 AHHAADAHHAADAHHATDAHHAADAHHAADAH---HATDAHHAHHAADAHHAAAHHATDA 305
Query: 76 PNQRSRHHALAEYRA 32
+ HHA A + A
Sbjct: 306 HHATDAHHAAAHHEA 320
>gi|2281102|gb|AAB64038.1| (AC002333) putative SF16 protein
{Helianthus annuus} [Arabidopsis thaliana]
Length = 657
Score = 34.0 bits (76), Expect = 3.1
Identities = 34/126 (26%), Positives = 47/126 (36%), Gaps = 3/126 (2%)
Frame = -3
Query: 439 PDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPPSHPNA 260
PDR NP+ A A A P PT + S P SP + + P P+
Sbjct: 70 PDRPNPYSASPPPRPASPRVASPRPTSPRVAS-------PRVPSPRAEVPRTLSPKPPSP 122
Query: 259 HANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPA---APH 89
A +S P P P ++ + + P + TL+P T P+ PH
Sbjct: 123 RA-EVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPTLRPASTRVPSQRITPH 181
Query: 88 GYPSPNQRS 62
PSP S
Sbjct: 182 SVPSPRPSS 190
>gi|1019433 (U32346) mucin-like protein; Method: conceptual
translation supplied by author [Trypanosoma cruzi]
>gi|1585304|prf||2124391B mucin-like protein [Trypanosoma
cruzi]
Length = 165
Score = 34.0 bits (76), Expect = 3.1
Identities = 29/133 (21%), Positives = 48/133 (35%)
Frame = -2
Query: 1454 STRLATSVSSNG*RTPATS*YRS*PLPAINTTSSXXXXXXXXXXXAERSRCTFTTLGRAK 1275
S +A SVS N T T+ P TT++ + T TT
Sbjct: 25 SVCVAESVSQNNTTTTTTT------KPPTTTTTTTTKPPTTTTTTTTKPPTTTTTTTTKP 78
Query: 1274 PARMSATMPSPSSPRGLSSVTNTTSALLSAITAICERLPLSRSPPQPNTQIKRPHTWLLK 1095
P + T P + ++ T + + T P + PNT R + + +
Sbjct: 79 PTTTTTTTTKPPTTT-TTTTTKPPTTTTTTTTTTAPEAPSITTTEAPNTTTTRAPSSIRR 137
Query: 1094 LDNTCPSASGVCA 1056
+D + S++ VCA
Sbjct: 138 IDGSLGSSAWVCA 150
>gi|2196755 (AF002988) forkhead homolog [Ciona intestinalis]
Length = 587
Score = 33.6 bits (75), Expect = 4.1
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Frame = -3
Query: 442 PPDRTNP---HRACHRSH----CARLDNAKP--APTIA-------QWTSYHWCQ*HPPWS 311
PP +NP H + H SH + DN P AP+ A Q+T H H
Sbjct: 257 PPSMSNPGSTHNSPHNSHETYADSDTDNKSPDLAPSTAIPSHDQLQYTQQHTSLGHGMLH 316
Query: 310 S-PATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ 155
PA P+H N+ ANH Q+ +PA P+ KLQ H HT Q
Sbjct: 317 QIPA--------PTHDNSSANHPSQTSNPA--YPSQADHNDKLQHH--HTQQQ 357
>gi|4104321 (AF034582) vesicle associated protein [Rattus norvegicus]
Length = 1249
Score = 33.6 bits (75), Expect = 4.1
Identities = 19/53 (35%), Positives = 24/53 (44%), Gaps = 2/53 (3%)
Frame = -3
Query: 370 APTIAQWTSYH--WCQ*HPPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPP 212
APT+ W+ HPP + P+ G+ PP H N SP P PT P
Sbjct: 838 APTVTTWSDRTPTALPSHPPAACPSDTQGGNPPPPGFIMHGNVVPNSPAPLPTSP 892
>gi|1067167|emb|CAA49544| (X69924) HRPII [Plasmodium falciparum]
Length = 430
Score = 33.6 bits (75), Expect = 4.1
Identities = 57/267 (21%), Positives = 77/267 (28%), Gaps = 2/267 (0%)
Frame = -3
Query: 802 SHLHPCDHTR*LQPAASPWPNHATDADRMGXXXXXXXXXXPDARIGAPWPHRSAPCHRDN 623
++ H H AA +HA DA A H +A H
Sbjct: 113 AYAHHAHHATDAHHAADA--HHAADAHHAADAHHAADAHHAHHAAYAHHAHHAADAHHAT 170
Query: 622 QDDHASD--W*TPPRHNAHRPHALDQGRAN*LXXXXXXXXXXXXXPDTDAVAIPAAS*NP 449
HA+D T H A HA D A DA A+
Sbjct: 171 DAHHAADAHHATDAHHAADAHHAADAHHAADAHHAHHAADAHHAHHAADAHHAHHAA--- 227
Query: 448 LVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPPSH 269
D + H A + H +A A A +Y H + A D +H
Sbjct: 228 ----DAHHAHHAAYAHHAHHASDAHHAAD-AHHAAYAHHAHHAADAHHAAD-------AH 275
Query: 268 PNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAAPH 89
A+HA + H A A A H H + HH A H
Sbjct: 276 HATDAHHAADAHHAADAHHAADAHHAHHAADAHHAHHAADAHHAHHAADAHHAHHAAYAH 335
Query: 88 GYPSPNQRSRHHALAEYRAIAAPMA*NAS 2
+ + HHA + A A A +A+
Sbjct: 336 --HAHHASDAHHAADAHHAAYAHHAHHAA 362
>gi|4680494|gb|AAD27674.1|AF119222_6 (AF119222) hypothetical protein
[Oryza sativa]
Length = 435
Score = 33.6 bits (75), Expect = 4.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 348 RLTIGASDTHHGHRLRRMAVEAIRHXXXXXXXTMHCNRPIRHRHPLR 208
R+ +GAS H HR + +R H RPI+H HPLR
Sbjct: 386 RVEVGASHAHQPHRRDAQLLVEVRQAAHHADGDPHPRRPIQH-HPLR 431
>gi|6005856|ref|NP_009183.1|| Retina-derived POU-domain factor-1
>gi|1890304 (U91935) retina-derived POU-domain factor-1
[Homo sapiens]
Length = 648
Score = 33.6 bits (75), Expect = 4.1
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -3
Query: 280 PPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHP 101
PP P A Q P PAPT +A Q + Q H+H Q + +++ P Q
Sbjct: 217 PPQQPPP----ASQQP-PAPTSQLQQAPQPQQHQPHSHSHNQNQPSPTQQSSSPPQKPSQ 271
Query: 100 AAPHGYPSP 74
+ HG PSP
Sbjct: 272 SPGHGLPSP 280
>gi|1890302 (U91934) retina-derived POU-domain factor-1 [Homo
sapiens]
Length = 684
Score = 33.6 bits (75), Expect = 4.1
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -3
Query: 280 PPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHP 101
PP P A Q P PAPT +A Q + Q H+H Q + +++ P Q
Sbjct: 217 PPQQPPP----ASQQP-PAPTSQLQQAPQPQQHQPHSHSHNQNQPSPTQQSSSPPQKPSQ 271
Query: 100 AAPHGYPSP 74
+ HG PSP
Sbjct: 272 SPGHGLPSP 280
>gi|3064144 (AF036407) mucin-like protein [Trypanosoma cruzi]
Length = 148
Score = 33.6 bits (75), Expect = 4.1
Identities = 22/107 (20%), Positives = 42/107 (38%), Gaps = 3/107 (2%)
Frame = -2
Query: 1376 PAINTTSSXXXXXXXXXXXAERSRCTFTTLGRAKPARMSATM---PSPSSPRGLSSVTNT 1206
P++ T+S + T TT P + T P+ ++ ++ T T
Sbjct: 24 PSVCVTASGQKQETTTTTTTTKPPTTTTTTTTKPPTTTTTTTTKPPTTTTTTTTTTTTTT 83
Query: 1205 TSALLSAITAICERLPLSRSPPQPNTQIKRPHTWLLKLDNTCPSASGVCA 1056
T+ + T P + PNT R + + ++D + S++ CA
Sbjct: 84 TTTTTTTTTTTAPEAPSITTTEAPNTTXTRAPSSIRRIDGSLGSSAWACA 133
>gi|3879830|emb|CAB03354.1| (Z81122) Similartiy to human KIAA0170
protein; cDNA EST EMBL:D68646 comes from this gene; cDNA
EST CEMSF69R comes from this gene; cDNA EST EMBL:D64481
comes from this gene; cDNA EST EMBL:D67484 comes from
this gene; cDNA EST ...
Length = 1074
Score = 33.6 bits (75), Expect = 4.1
Identities = 31/92 (33%), Positives = 38/92 (40%), Gaps = 7/92 (7%)
Frame = -3
Query: 289 GSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHL----WHTHPQ*NTTRERRTLQ 122
G P S P + +Q A A AAQ + QQHL + +PQ R Q
Sbjct: 141 GGPPTSVPYDYQQAQMQQQQHAQAMAAAAAAQQQQQQHLQQQQYAQNPQQMHDSPYRQHQ 200
Query: 121 PRQTH-HPAAPHGYPS--PNQRSRHHALAEYRAIAAPMA 14
Q H HP P YP P Q++ Y AA A
Sbjct: 201 MMQMHQHPGHPSQYPPGYPQQQAAQWQQQMYARQAAAQA 239
>gi|5824613|emb|CAB54313.1| (Z81122) T13F2.3b [Caenorhabditis
elegans]
Length = 1076
Score = 33.6 bits (75), Expect = 4.1
Identities = 31/92 (33%), Positives = 38/92 (40%), Gaps = 7/92 (7%)
Frame = -3
Query: 289 GSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHL----WHTHPQ*NTTRERRTLQ 122
G P S P + +Q A A AAQ + QQHL + +PQ R Q
Sbjct: 143 GGPPTSVPYDYQQAQMQQQQHAQAMAAAAAAQQQQQQHLQQQQYAQNPQQMHDSPYRQHQ 202
Query: 121 PRQTH-HPAAPHGYPS--PNQRSRHHALAEYRAIAAPMA 14
Q H HP P YP P Q++ Y AA A
Sbjct: 203 MMQMHQHPGHPSQYPPGYPQQQAAQWQQQMYARQAAAQA 241
>gi|1168933|sp|P40954|CHI3_CANAL CHITINASE 3 PRECURSOR >gi|571429
(U15801) chitinase [Candida albicans]
Length = 567
Score = 33.6 bits (75), Expect = 4.1
Identities = 44/159 (27%), Positives = 71/159 (43%), Gaps = 8/159 (5%)
Frame = -2
Query: 1481 TVSWADIAASTRLATSVSSNG*--RTPATS*YRS*PLPAINTTSSXXXXXXXXXXXAERS 1308
T S + +T +T++SS+ +T TS + +TTSS + S
Sbjct: 319 TTSSSTTTTTTTTSTTISSSSSSSKTSKTSTTSTTSSSISSTTSSTTSSTSSSSTSSSTS 378
Query: 1307 RCTFTTLGRAKPARMSATMPSPSSPRGLSSVTNTTSALLSAITAI--CERLPLSRSPPQP 1134
TT +++S T +P+S LSS T +TSA S T++ E P+ +P
Sbjct: 379 S---TTSSSTTSSQISTTSTAPTSSTSLSSSTISTSASTSDTTSVTSSETTPVV-TPSSL 434
Query: 1133 NTQIKRP----HTWLLKLDNTCPSASGVCA*SXXXTGCPS*PPKRFI 1005
++ I P T + K +T P+ S A S T + P + I
Sbjct: 435 SSAITIPGDSTTTGISKSSSTKPATSTTSALSSSTTTVATIPDDKEI 481
>gi|4557557|ref|NP_001420.1|| E1A binding protein p300
>gi|3024341|sp|Q09472|P300_HUMAN E1A-ASSOCIATED PROTEIN
P300 >gi|627657|pir||A54277 transcription adaptor protein
p300 - human >gi|495301 (U01877) p300 protein [Homo
sapiens]
Length = 2414
Score = 33.6 bits (75), Expect = 4.1
Identities = 40/146 (27%), Positives = 52/146 (35%), Gaps = 2/146 (1%)
Frame = -3
Query: 454 NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPP 275
+P++PP H C + L P+P ++ + H H P S A PP
Sbjct: 805 SPIMPPGSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPH----HTPPSIGA-----QQPP 855
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTL-QPRQTHHPA 98
A P P PTPPA+ Q H P+ T L Q Q PA
Sbjct: 856 ---------ATTIPAPVPTPPAMPPGP---QSQALHPPPRQTPTPPTTQLPQQVQPSLPA 903
Query: 97 APHG-YPSPNQRSRHHALAEYRAIAAPM 17
AP P RS+ A AP+
Sbjct: 904 APSADQPQQQPRSQQSTAASVPTPNAPL 931
>gi|3150111|emb|CAA19164.1| (AL023596) hypothetical protein
MLCB2407.24c [Mycobacterium leprae]
Length = 411
Score = 33.6 bits (75), Expect = 4.1
Identities = 34/130 (26%), Positives = 46/130 (35%)
Frame = +1
Query: 325 VTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLR 504
VTGTNGK++T ++ A L S G + G L LA L
Sbjct: 56 VTGTNGKSTTTRMTVDALSTLAPGSVATNAEGANM-----DAGLVAALAANRAATLAVL- 109
Query: 505 DEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQD 684
+ M V A D + +VV NL+RD LD G++ A
Sbjct: 110 ----EVDEMHVPRVA------DALTPHIVVLLNLSRDQLDRVGEINVIERTLRTGLARHP 159
Query: 685 VQAAVINVDD 714
+ N DD
Sbjct: 160 TAVVIANCDD 169
>gi|4467417|emb|CAB37864| (AJ133271) atrophin-1 [Gorilla gorilla]
Length = 299
Score = 33.6 bits (75), Expect = 4.1
Identities = 29/91 (31%), Positives = 37/91 (39%), Gaps = 5/91 (5%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 91 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHH------ 142
Query: 142 RERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
++ Q +Q HH P P +P P + S HHA
Sbjct: 143 HHQQQQQQQQQHHGSSGPPPPGAFPHPLEGGSSHHA 178
>gi|4467947|emb|CAB37921| (AJ133274) atrophin-1 [Macaca
fascicularis]
Length = 286
Score = 33.6 bits (75), Expect = 4.1
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 77 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPASTHHHHH---- 130
Query: 142 RERRTLQPRQTHHPAA---PHGYPSPNQ-RSRHHA 50
++++ Q +Q HH ++ P +P P + S HHA
Sbjct: 131 QQQQQQQQQQQHHGSSGPPPGAFPHPLEGGSSHHA 165
>gi|2896861 (U93011) hunchback protein [Drosophila sp. 'white tip
scutellum']
Length = 104
Score = 33.6 bits (75), Expect = 4.1
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = -3
Query: 274 SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAA 95
S+ N++A+ QSP P+P PP+ + +L+Q+L Q ++++ QP A
Sbjct: 35 SNSNSNASSPHQSPSPSPNPPS--STNLQLEQYLKQQQQQQQQQQQQQQQQPMDALCAGA 92
Query: 94 PHGYPSPNQRS 62
PS N ++
Sbjct: 93 MTPSPSNNDQN 103
>gi|2429508 (AF025467) contains weak similarity to human mitotic
growth and transcription activator BRG1 protein
(GB:S66910) [Caenorhabditis elegans]
Length = 1127
Score = 33.2 bits (74), Expect = 5.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 319 PWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTP 215
P PA G G H ++H H HPAPTP
Sbjct: 170 PIPEPAHTGHGHSHGGHGHSHGGHGHSHGHPAPTP 204
>gi|2708784 (AF020538) MADS-box homolog Umc1 [Ustilago maydis]
Length = 454
Score = 33.2 bits (74), Expect = 5.4
Identities = 24/71 (33%), Positives = 36/71 (49%), Gaps = 2/71 (2%)
Frame = -3
Query: 307 PATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRA--AQTKLQQHLWHTHPQ*NTTRER 134
P + G+ P S N +N A HP P PPA+ + + QH H H Q + R++
Sbjct: 270 PRKNTAGNAPASSSNT-SNDA----HPMPPPPAMHQSFSDDAVHQHHQHQHHQ-HQHRQQ 323
Query: 133 RTLQPRQTHHPAA 95
+ Q + TH P+A
Sbjct: 324 QQQQQQYTHVPSA 336
>gi|4589703|dbj|BAA76869.1| (D83534) Dfd [Bombyx mori]
Length = 392
Score = 33.2 bits (74), Expect = 5.4
Identities = 19/62 (30%), Positives = 28/62 (44%)
Frame = -3
Query: 343 YHWCQ*HPPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHT 164
YH HPP + P PSHP+ A+H S H + PP + +L++H+
Sbjct: 64 YHPLPQHPPVAPPPRPPE----PSHPS-DADHGFASSHNSDGPPGLAELGLRLERHIEEA 118
Query: 163 HP 158
P
Sbjct: 119 AP 120
>gi|1419220|emb|CAA65618| (X96876) putative ORF [Saccharomyces
cerevisiae]
Length = 302
Score = 33.2 bits (74), Expect = 5.4
Identities = 29/129 (22%), Positives = 46/129 (35%)
Frame = -1
Query: 597 EHHHVIMHTVHTPLIKGVRTDFHRHRLSTLVTQLRQTLMQLQYQRRRETRWYHLIVQTHT 418
+HHH H RT H HR+ +RQ ++ +R R + +H I Q
Sbjct: 58 QHHHRTHQHHHRTRQHHHRTHLHHHRIHQRHHHIRQRHHHIRQRRHRILQRHHRIRQRRL 117
Query: 417 ERATGRTAHA*TMPSLRQQLHSGRLTIGASDTHHGHRLRRMAVEAIRHXXXXXXXTMHCN 238
R A A + + LH L + H +R+ H +H
Sbjct: 118 PTLPRRQATALRLLLILLHLHHTLLRHQVTAQRHQVTAQRLQPIPQHH----QVIVLHRL 173
Query: 237 RPIRHRHPL 211
++H HP+
Sbjct: 174 HTLQHHHPI 182
>gi|4467977|emb|CAB37923| (AJ133270) atrophin-1 [Pan paniscus]
Length = 313
Score = 33.2 bits (74), Expect = 5.4
Identities = 30/91 (32%), Positives = 40/91 (42%), Gaps = 13/91 (14%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTH------ 161
P S A +G PP P A + HP P PP+ A T H H
Sbjct: 91 PSLPSQAVWSQGPPPP--PPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQ 148
Query: 160 --PQ*NTTRERRTLQPRQTHH----PAAPHGYPSPNQ-RSRHHA 50
Q ++++ Q +Q HH P P +P P + S HHA
Sbjct: 149 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHA 192
>gi|516695|dbj|BAA05378| (D26324) unknown protein [Gallus gallus]
Length = 152
Score = 33.2 bits (74), Expect = 5.4
Identities = 18/44 (40%), Positives = 24/44 (53%), Gaps = 2/44 (4%)
Frame = -2
Query: 1190 SAITAICERLPLSRSPPQP--NTQIKRPHTWLLKLDNTCPSASGVC 1059
SA A +R +RSPPQP T + P W +T PS++G C
Sbjct: 10 SAEVAEAQRAAATRSPPQPTAGTALTAPPCWTPSAVSTTPSSTGGC 55
>gi|84221|pir||A25942 histidine/alanine-rich protein II - Plasmodium
falciparum (fragment)
Length = 309
Score = 32.8 bits (73), Expect = 7.1
Identities = 49/207 (23%), Positives = 69/207 (32%), Gaps = 7/207 (3%)
Frame = -3
Query: 652 HRSAPCHRDNQDDHASDW*TPPRHNAHRPHALDQGRAN*LXXXXXXXXXXXXXPDTDA-- 479
H +A H + HA+D H+AH HA D A+ DA
Sbjct: 104 HHAADAHHAH---HAAD-----AHHAH--HAADAHHAHHAAYAHHAHHASDAHHAADAHH 153
Query: 478 VAIPAAS*NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPAT 299
A + + + H A + H +A A T H H + AT
Sbjct: 154 AAYAHHAHHAADAHHAADAHHAAYAHHAHHAADAHHAADAHHATDAHHAH-HAADAHHAT 212
Query: 298 DGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQP 119
D + +H A A+HA + H A A A H H + T
Sbjct: 213 DAHHA-ADAHHAADAHHATDAHHAADAHHATDAHHAADAHHAADAH---HATDSHHAHHA 268
Query: 118 RQTHHPAAPHGYPSPNQRSRH-----HALAEYRA 32
HH AA H + + + H HA A + A
Sbjct: 269 ADAHHAAAHHATDAHHAAAHHATDAHHAAAHHEA 302
>gi|3219995|sp|P37773|MPL_ECOLI
UDP-N-ACETYLMURAMATE:L-ALANYL-GAMMA-D-GLUTAMYL-MESO-
DIAMINOPIMELATE LIGASE >gi|1361182|pir||S56459
hypothetical protein o457 - Escherichia coli >gi|537075
(U14003) ORF_o457 [Escherichia coli] >gi|1790680
(AE000494) putative ligase [Escherichia coli]
Length = 457
Score = 32.8 bits (73), Expect = 7.1
Identities = 59/272 (21%), Positives = 99/272 (35%), Gaps = 5/272 (1%)
Frame = +1
Query: 316 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 495
++ V GT+GKT+T + G + G VP F + A
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEQCGYKP--------GFVIGGVPGNF---------EVSA 147
Query: 496 QLRDEGAQAVAMEVSSHALDQGRVDGVHY--DVVVFTNLTRDHLDYHGDMEHYGAAKARL 669
L + + + A R VHY ++ NL DH D D++ L
Sbjct: 148 HLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207
Query: 670 FAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDL 849
Q +I ++ L+ + + V GH A + S +++
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDAS------EWEV 261
Query: 850 VI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQ 1026
++ G V+ L+G N+ N L + A ++ A L + R+ G
Sbjct: 262 LLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRGEA 321
Query: 1027 DGQPXXXXDYAHTPDALGQVLSSLSSHVCG--RLICV 1131
+G D+AH P A+ L++L V G R+I V
Sbjct: 322 NGV-TVYDDFAHHPTAILATLAALRGKVGGTARIIAV 357
>gi|5533305|gb|AAD45121.1|AF163302_1 (AF163302) somatostatin receptor
interacting protein splice variant a [Homo sapiens]
Length = 2161
Score = 32.8 bits (73), Expect = 7.1
Identities = 28/91 (30%), Positives = 36/91 (38%), Gaps = 9/91 (9%)
Frame = -3
Query: 322 PPWSSPAT-DGRGSDPPSHPNAHANHALQSPHPA--------PTPPAVRAAQTKLQQHLW 170
PP+S+P G PS N P PA P+PP R ++ L+
Sbjct: 931 PPYSTPTVPSSSGRLTPSPRGGPFNPGSGGPLPASSPATFDGPSPPDTRVGSR--EKSLY 988
Query: 169 HTHPQ*NTTRERRTLQPRQTHHPAAPHGYPSPNQRSRHHA 50
H+ P L P H P H + P Q HHA
Sbjct: 989 HSGP----------LPPAHHHPPHHHHHHAPPPQPHHHHA 1018
>gi|84948|pir||A34218 homeotic protein ems - fruit fly (Drosophila
melanogaster) >gi|671861|emb|CAA35965| (X51653) empty
spiracles homeotic protein [Drosophila melanogaster]
>gi|226721|prf||1604244A empty spiracles gene
[Drosophila melanogaster]
Length = 494
Score = 32.8 bits (73), Expect = 7.1
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Frame = -3
Query: 322 PPWSSPATDGR-GSDPPSHPNAHANHALQSPH----------PAPTPPAVRAAQTKLQQH 176
PP + PAT PP H A H L PH P P P A Q L QH
Sbjct: 64 PPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVLHQH 123
Query: 175 LWHTHPQ*NTTRERRTLQP--RQTHHPAAPHGYPSPNQ 68
L T + + +Q ++ HH AA SP Q
Sbjct: 124 LLMQQQHPGTPKSHQDIQELLQRLHHNAAMATRLSPLQ 161
>gi|2498942|sp|Q62203|SP62_MOUSE SPLICEOSOME ASSOCIATED PROTEIN 62
(SAP 62) (SF3A66) >gi|633251|emb|CAA58703| (X83733)
spliceosome SAP62 [Mus musculus]
Length = 485
Score = 32.8 bits (73), Expect = 7.1
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Frame = -3
Query: 325 HPPWSSPATDGRGSDPPS---HPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ 155
HPP G PP+ HP A Q+P P PAV + HPQ
Sbjct: 365 HPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAPGIHPQ 424
Query: 154 *NTTRERRTLQPRQTHHPAAPHGYPSP 74
QP HPAAP +P P
Sbjct: 425 APGVHP----QPPPGVHPAAPGVHPQP 447
>gi|123736|sp|P13361|HUNB_DROVI HUNCHBACK PROTEIN
>gi|85249|pir||S05548 gap protein hunchback - fruit fly
(Drosophila virilis) >gi|9179|emb|CAA33419| (X15359)
zinc-finger protein (AA 1 to 816) [Drosophila virilis]
Length = 816
Score = 32.8 bits (73), Expect = 7.1
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -3
Query: 283 DPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHH 104
D S+ N+ A+ QSP P+P PP+ T+L+Q+L Q +++ QP T
Sbjct: 46 DNHSNSNSGASSPRQSPLPSPIPPS-----TQLEQYLKQQQQQ-----QQQQQQPMDTLC 95
Query: 103 PAAPHGYPSPN-QRSRHH 53
AA PS N Q S H
Sbjct: 96 AAAMTPSPSNNDQNSLQH 113
>gi|5815245|gb|AAD52614.1|AF175223_1 (AF175223) SANT domain protein
SMRTER [Drosophila melanogaster]
Length = 3469
Score = 32.8 bits (73), Expect = 7.1
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Frame = -3
Query: 292 RGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQ 113
RG PPS + H H + HPA + T+LQ P+ T PR
Sbjct: 2064 RGIPPPSQHSVHPAHPSHTQHPAHPQHSSHGQHTQLQV----PEPEPQTLDLSIKKPPRD 2119
Query: 112 THHP--------AAPHGYPSPNQRSRHH 53
H P ++ G P+ RHH
Sbjct: 2120 GHSPHTGAGGSSSSGSGSGGPSSSDRHH 2147
>gi|123526|sp|P05227|HRP1_PLAFA HISTIDINE-RICH PROTEIN PRECURSOR
(CLONE PFHRP-II) >gi|160336 (M13986) histidine-rich
protein [Plasmodium falciparum]
Length = 332
Score = 32.8 bits (73), Expect = 7.1
Identities = 49/207 (23%), Positives = 69/207 (32%), Gaps = 7/207 (3%)
Frame = -3
Query: 652 HRSAPCHRDNQDDHASDW*TPPRHNAHRPHALDQGRAN*LXXXXXXXXXXXXXPDTDA-- 479
H +A H + HA+D H+AH HA D A+ DA
Sbjct: 127 HHAADAHHAH---HAAD-----AHHAH--HAADAHHAHHAAYAHHAHHASDAHHAADAHH 176
Query: 478 VAIPAAS*NPLVPPDRTNPHRACHRSHCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPAT 299
A + + + H A + H +A A T H H + AT
Sbjct: 177 AAYAHHAHHAADAHHAADAHHAAYAHHAHHAADAHHAADAHHATDAHHAH-HAADAHHAT 235
Query: 298 DGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQP 119
D + +H A A+HA + H A A A H H + T
Sbjct: 236 DAHHA-ADAHHAADAHHATDAHHAADAHHATDAHHAADAHHAADAH---HATDSHHAHHA 291
Query: 118 RQTHHPAAPHGYPSPNQRSRH-----HALAEYRA 32
HH AA H + + + H HA A + A
Sbjct: 292 ADAHHAAAHHATDAHHAAAHHATDAHHAAAHHEA 325
>gi|4885239|ref|NP_005240.1|| forkhead box G1B
>gi|1705454|sp|P55315|BF1_HUMAN TRANSCRIPTION FACTOR
BF-1 (BRAIN FACTOR 1) (BF1) (HFK1)
>gi|516381|emb|CAA52239| (X74142) transcription factor
[Homo sapiens] >gi|1098060|prf||2115219B brain factor 1
[Homo sapiens]
Length = 477
Score = 32.8 bits (73), Expect = 7.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 286 SDPPSHPNAHANHALQSPHPAPTPPAVRAAQ 194
S P H + H +H P PAP PP RAAQ
Sbjct: 42 SHHPQHHHHHHHHHHHPPPPAPQPPPPRAAQ 72
>gi|1079035|pir||S51599 Om(2D) protein - fruit fly (Drosophila
ananassae) >gi|443770|dbj|BAA05551| (D26553) ORF
[Drosophila ananassae]
Length = 671
Score = 32.8 bits (73), Expect = 7.1
Identities = 25/79 (31%), Positives = 30/79 (37%)
Frame = -3
Query: 325 HPPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NT 146
H P S P P +HP+AH +H H PP V A T H+ H HP
Sbjct: 235 HNPHSHP-------HPLAHPHAHPHHG----HHVGAPPPVSTAVT-THHHMAHPHP---- 278
Query: 145 TRERRTLQPRQTHHPAAPH 89
+HH AA H
Sbjct: 279 ----------LSHHHAAHH 287
>gi|464488|sp|P08798|PSV_DICDI PRESPORE VESICLE PROTEIN PRECURSOR
(PSV) >gi|283460|pir||S28358 prespore vesicle protein -
slime mold (Dictyostelium discoideum)
>gi|7273|emb|CAA40438| (X57149) prespore vesicle protein
[Dictyostelium discoideum]
Length = 513
Score = 32.8 bits (73), Expect = 7.1
Identities = 39/129 (30%), Positives = 51/129 (39%)
Frame = -3
Query: 400 HCARLDNAKPAPTIAQWTSYHWCQ*HPPWSSPATDGRGSDPPSHPNAHANHALQSPHPAP 221
H A+ +AKPA +AQ Q + PA + P H NA HA + H A
Sbjct: 341 HAAQQQHAKPAQHVAQ-------QQQQQHAKPAAH-TAAKPVQH-NAQQQHAKPAAHTAA 391
Query: 220 TPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAAPHGYPSPNQRSRHHALAE 41
P AAQ + H P N R + +Q PAA H P Q H+A +
Sbjct: 392 KPVQHNAAQQHAKPAA-HAKPAVNAARPVQHNAAQQHAKPAA-HTAAKPVQ---HNAAQQ 446
Query: 40 YRAIAAPMA 14
+ AA A
Sbjct: 447 HAKPAAKPA 455
>gi|1082850|pir||A54743 transcription factor HFK1 - human
Length = 476
Score = 32.8 bits (73), Expect = 7.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 286 SDPPSHPNAHANHALQSPHPAPTPPAVRAAQ 194
S P H + H +H P PAP PP RAAQ
Sbjct: 42 SHHPQHHHHHHHHHHHPPPPAPQPPPPRAAQ 72
>gi|3980527|gb|AAC83404.1| (AC005483) retina-derived POU-domain
factor-1 [Homo sapiens]
Length = 520
Score = 32.5 bits (72), Expect = 9.2
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Frame = -3
Query: 331 Q*HPPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVR---AAQTKLQQ------ 179
Q PP P+T+ P P+ LQ P PPA + A ++LQQ
Sbjct: 23 QQQPP---PSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQQ 79
Query: 178 HLWHTHPQ*NTTRERRTLQ---PRQTHHPAAPHGYPSP 74
H H+H Q N + T Q P Q + HG PSP
Sbjct: 80 HQPHSHSQ-NQNQPSPTQQSSSPPQKPSQSPGHGLPSP 116
>gi|4503395|ref|NP_003668.1|| density-regulated protein
>gi|6015031|sp|O43583|DRP1_HUMAN DRP1 PROTEIN (DRP)
Length = 243
Score = 32.5 bits (72), Expect = 9.2
Identities = 22/51 (43%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Frame = +3
Query: 681 GCAGGGNQCG*PIRSASVAWFGQ-GDAAGWSQRVWSHGCRCDGAASESESSG 833
G A GG G P + VA G GD AG R + C+ AA SESSG
Sbjct: 4 GSAAGGRALGRPWGARRVACVGSAGDTAGAEPRACATAWVCEMAADISESSG 55
>gi|4755083|gb|AAC02985.2| (AF038554) density regulated protein drp1
[Homo sapiens]
Length = 243
Score = 32.5 bits (72), Expect = 9.2
Identities = 22/51 (43%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Frame = +3
Query: 681 GCAGGGNQCG*PIRSASVAWFGQ-GDAAGWSQRVWSHGCRCDGAASESESSG 833
G A GG G P + VA G GD AG R + C+ AA SESSG
Sbjct: 4 GSAAGGRALGRPWGARRVACVGSAGDTAGAEPRACATAWVCEMAADISESSG 55
>gi|4775349|emb|CAB42602.1| (AJ012582) hyperpolarization-activated
cation channel HCN2 [Homo sapiens]
>gi|4803850|emb|CAB42630.1| (AJ133727)
hyperpolarization-activated cyclic nucleotide-gated
channel hHCN2 [Homo sapiens]
Length = 889
Score = 32.5 bits (72), Expect = 9.2
Identities = 29/103 (28%), Positives = 36/103 (34%), Gaps = 1/103 (0%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPP-SHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NT 146
PP +PA G PP S P A A+ P PA A L
Sbjct: 762 PPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPAR---------- 811
Query: 145 TRERRTLQPRQTHHPAAPHGYPSPNQRSRHHALAEYRAIAAPMA 14
R R +P P+ PHG P P +R + + R P A
Sbjct: 812 -RLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLRPTPAA 854
>gi|5105330|dbj|BAA80643.1| (AP000062) 101aa long hypothetical protein
[Aeropyrum pernix]
Length = 101
Score = 32.5 bits (72), Expect = 9.2
Identities = 24/67 (35%), Positives = 32/67 (46%)
Frame = -2
Query: 1304 CTFTTLGRAKPARMSATMPSPSSPRGLSSVTNTTSALLSAITAICERLPLSRSPPQPNTQ 1125
C R + AR S PSP P LSS T +ALL C R S++PP+P+ +
Sbjct: 36 CQCRRRARLRGARTSCPRPSP--PPRLSSETQA-AALLRPRRLCCWR-QASQAPPRPSCR 91
Query: 1124 IKRPHTW 1104
R +W
Sbjct: 92 APRARSW 98
>gi|2117195|emb|CAB09016| (Z95584) hypothetical protein Rv1157c
[Mycobacterium tuberculosis]
Length = 371
Score = 32.5 bits (72), Expect = 9.2
Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = -3
Query: 478 VAIPAAS*NPLVPPDRTNPHRACHR------SHCARLDNAKPAPTIAQWTSYHWCQ*HPP 317
VA+P A P VPP P H SH A PAP +A + PP
Sbjct: 131 VALPEAIPVPHVPPLGAEPGVQAHLPTGIDPSHAAG-----PAPAVAPTVT-------PP 178
Query: 316 WSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAA 197
++P S P P+A A+ P P P PPA RAA
Sbjct: 179 VAAPPA----SAPAPAPDAAQPVAV--PGPPPAPPAPRAA 212
>gi|1732051 (U59482) mucin-like apoprotein [Trypanosoma cruzi]
Length = 139
Score = 32.5 bits (72), Expect = 9.2
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = -2
Query: 1301 TFTTLGRAKPARMSATMPSPSSPRGLSSVTNTTSALLSAITAICERLPLSRSPPQPNTQI 1122
T TT KP + T + + P + T TT+ + T P + PNT
Sbjct: 46 TTTTTTTTKPPTTTTTTTTTTKP---PTTTTTTTTTTTTTTTTAPEAPSITTTEAPNTTT 102
Query: 1121 KRPHTWLLKLDNTCPSASGVCA 1056
R + + ++D + S++ CA
Sbjct: 103 TRAPSSIRRIDGSLGSSAWACA 124
>gi|5105932|dbj|BAA81244.1| (AP000063) 231aa long hypothetical
protein [Aeropyrum pernix]
Length = 231
Score = 32.5 bits (72), Expect = 9.2
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 337 WCQ*HPPWSSPATDGRGSDP-PSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQH 176
W +PP ++P +GRG P PS P H N Q P P + L+ H
Sbjct: 164 WIPVNPPSNAPGLEGRGHTPNPSPPALHNNDLHQPVIPGGRQPVLHPGLHTLRLH 218
>gi|2062362 (U64896) vp78 [Anagrapha falcifera nuclear polyhedrosis
virus] >gi|3511217|gb|AAC33759.1| (AF068270)
capsid-associated protein [Rachiplusia ou nuclear
polyhedrosis virus]
Length = 542
Score = 32.5 bits (72), Expect = 9.2
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPP--------------AVR--AAQT 191
PP SSPA++ PP P + L P PT P A+R +T
Sbjct: 185 PPPSSPASNIPAPPPPPPPPPPSMSELPPAPPMPTEPEPVAPLDDRQQLLEAIRNEKNRT 244
Query: 190 KLQQHLWHTHPQ*NTTRERRTLQPRQTHHPAAPHGYPSP 74
+L+ T P+ NT E T+ P+ T P P P P
Sbjct: 245 RLRPVKPKTVPETNTILELPTVLPK-TFEPKPPSASPPP 282
>gi|5523992|gb|AAD44048.1|AF109317_1 (AF109317) mutant VeA1 protein
[Emericella nidulans]
Length = 537
Score = 32.5 bits (72), Expect = 9.2
Identities = 24/81 (29%), Positives = 35/81 (42%), Gaps = 1/81 (1%)
Frame = -3
Query: 280 PPSHPNAHANHALQSPH-PAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHH 104
PPS P+ + HA P P PP + Q HL Q + + P+QT
Sbjct: 299 PPSTPSPASAHAPAPPSVPLAAPPPLHTPS--YQSHLSFGATQTQYPAPQLSHIPQQTTT 356
Query: 103 PAAPHGYPSPNQRSRHHALAEY 38
P P+ S SR+ +++EY
Sbjct: 357 PTHPYSPRSSISHSRNQSISEY 378
>gi|643430 (U17705) ICP4 protein [Gallid herpesvirus 1]
Length = 1417
Score = 32.5 bits (72), Expect = 9.2
Identities = 23/82 (28%), Positives = 31/82 (37%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P W++P+TD R S P S P + P P + P + + L HT
Sbjct: 62 PDWNNPSTDWRPSPPRSGPK--KDFCGDLPAPLTSGPRLTTPSSGRMSELPHT------- 112
Query: 142 RERRTLQPRQTHHPAAPHGYPS 77
T PR + P P PS
Sbjct: 113 ----TSSPRSSPRPRGPETSPS 130
>gi|3329358 (U95045) velvet A [Emericella nidulans]
>gi|5381335|gb|AAD42946.1|AF109316_1 (AF109316) VeA
protein [Emericella nidulans]
Length = 573
Score = 32.5 bits (72), Expect = 9.2
Identities = 24/81 (29%), Positives = 35/81 (42%), Gaps = 1/81 (1%)
Frame = -3
Query: 280 PPSHPNAHANHALQSPH-PAPTPPAVRAAQTKLQQHLWHTHPQ*NTTRERRTLQPRQTHH 104
PPS P+ + HA P P PP + Q HL Q + + P+QT
Sbjct: 335 PPSTPSPASAHAPAPPSVPLAAPPPLHTPS--YQSHLSFGATQTQYPAPQLSHIPQQTTT 392
Query: 103 PAAPHGYPSPNQRSRHHALAEY 38
P P+ S SR+ +++EY
Sbjct: 393 PTHPYSPRSSISHSRNQSISEY 414
>gi|103058|pir||A32584 Abd-B protein - fruit fly (Drosophila
melanogaster) >gi|7528|emb|CAA34260| (X16134) Abd-B
protein (AA 1-491) [Drosophila melanogaster]
Length = 491
Score = 32.5 bits (72), Expect = 9.2
Identities = 32/136 (23%), Positives = 52/136 (37%), Gaps = 16/136 (11%)
Frame = -1
Query: 1131 HTNQTTAYVATQTGQHLPQRIRGMCVINHH--HRLPILTTQTIHPAMNRPQRRQHRSNLG 958
H Q Q QHL ++ + + ++HH H LP T H P +Q +
Sbjct: 5 HLQQQQQQQQQQEQQHLQEQQQHLQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQ 64
Query: 957 QRVIQRIKNTCHRKQIINVETSHQR*THRSMIRTDDKI--------------KPDTLKIQ 820
V+ + ++Q + T+H TH M + + L+ Q
Sbjct: 65 HAVVASSPSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQ 124
Query: 819 TQMLRHHICIRVTTHADSNPPHPLGQTMQQTQ 724
Q + + A S P G + QQ Q
Sbjct: 125 QQQQQQQLATTPVAGALSPAQTPTGPSAQQQQ 156
>gi|417175|sp|Q02362|ICP4_HSVMG TRANS-ACTING TRANSCRIPTIONAL
ACTIVATOR PROTEIN ICP4 (IMMEDIATE-EARLY PROTEIN IE175)
>gi|319981|pir||EDBEGA immediate-early protein IE175 -
Marek's disease virus (strain GA) >gi|330951 (M75729)
ICP4 [Gallid herpesvirus type 1]
Length = 1415
Score = 32.5 bits (72), Expect = 9.2
Identities = 23/82 (28%), Positives = 31/82 (37%)
Frame = -3
Query: 322 PPWSSPATDGRGSDPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ*NTT 143
P W++P+TD R S P S P + P P + P + + L HT
Sbjct: 62 PDWNNPSTDWRPSPPRSGPK--KDFCGDLPAPLTSGPRLTTPSSGRMSELPHT------- 112
Query: 142 RERRTLQPRQTHHPAAPHGYPS 77
T PR + P P PS
Sbjct: 113 ----TSSPRSSPRPRGPETSPS 130
>gi|4539380|emb|CAB37446.1| (AL035526) putative protein [Arabidopsis
thaliana]
Length = 191
Score = 32.5 bits (72), Expect = 9.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 283 DPPSHPNAHANHALQSPHPAPTPPAVRAAQTKLQQHLWHTHPQ 155
DPP HP++ +NH Q P P P R K + W+T Q
Sbjct: 11 DPPDHPSSSSNHHKQPLPPQPQQPLSRYESQKRRD--WNTFVQ 51
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396739444
Number of Sequences: 443958
Number of extensions: 9241870
Number of successful extensions: 38942
Number of sequences better than 10.0: 364
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 38533
Number of HSP's gapped (non-prelim): 376
length of query: 496
length of database: 136,619,797
effective HSP length: 56
effective length of query: 439
effective length of database: 111,758,149
effective search space: 49061827411
effective search space used: 49061827411
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 72 (32.5 bits)