BLASTX 2.0.10 [Aug-26-1999]
Query= XF-02D09-GL38
(450 letters)
Database: nr
461,791 sequences; 142,317,894 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|133030|sp|P02418|RL9_ECOLI 50S RIBOSOMAL PROTEIN L9 >gi|1360... 142 1e-33
gi|1173067|sp|P44349|RL9_HAEIN 50S RIBOSOMAL PROTEIN L9 >gi|107... 142 2e-33
gi|3122741|sp|O07816|RL9_NEIGO 50S RIBOSOMAL PROTEIN L9 >gi|219... 131 5e-30
gi|71255|pir||R5EC9 ribosomal protein L9 - Escherichia coli >gi... 129 1e-29
gi|6226012|sp|O68128|RL9_RHOCA 50S RIBOSOMAL PROTEIN L9 >gi|312... 125 2e-28
gi|5870823|gb|AAD54599.1|AF178080_1 (AF178080) ribosomal protei... 123 8e-28
gi|6647726|sp|O67830|RL9_AQUAE 50S RIBOSOMAL PROTEIN L9 >gi|298... 106 1e-22
gi|6739550|gb|AAF27298.1|AF146075_4 (AF146075) ribosomal protei... 97 7e-20
gi|6457768|gb|AAF09694.1|AE001873_4 (AE001873) ribosomal protei... 91 4e-18
gi|39817|emb|CAA43972.1| (X62002) ribosomal protein L9 [Bacillu... 90 7e-18
gi|133029|sp|P02417|RL9_BACST 50S RIBOSOMAL PROTEIN L9 (BL17) >... 90 7e-18
gi|143421|gb|AAA22701.1| (M57623) ribosomal protein L9 [Bacillu... 89 3e-17
gi|3914765|sp|O51139|RL9_BORBU 50S RIBOSOMAL PROTEIN L9 >gi|268... 89 3e-17
gi|2829553|sp|P71713|RL9_MYCTU 50S RIBOSOMAL PROTEIN L9 >gi|156... 87 8e-17
gi|4808405|emb|CAB42737.1| (AL049826) putative 50S ribosomal pr... 87 1e-16
gi|6094101|sp|O83099|RL9_TREPA 50S RIBOSOMAL PROTEIN L9 >gi|332... 85 2e-16
gi|133034|sp|P25904|RL9_SYNEN 50S RIBOSOMAL PROTEIN L9 >gi|9762... 82 2e-15
gi|1173068|sp|P46385|RL9_MYCLE 50S RIBOSOMAL PROTEIN L9 >gi|295... 82 2e-15
gi|223251|prf||0701226A ribosomal protein L17 [Bacillus stearot... 82 3e-15
gi|585893|sp|P37437|RL9_BACSU 50S RIBOSOMAL PROTEIN L9 (BL17) >... 82 3e-15
gi|6226013|sp|Q9ZEA4|RL9_RICPR 50S RIBOSOMAL PROTEIN L9 >gi|386... 78 4e-14
gi|4981398|gb|AAD35945.1|AE001753_1 (AE001753) ribosomal protei... 72 3e-12
gi|1173070|sp|P42352|RL9_SYNY3 50S RIBOSOMAL PROTEIN L9 >gi|485... 70 9e-12
gi|6919963|sp|O84809|RL9_CHLTR 50S RIBOSOMAL PROTEIN L9 >gi|332... 67 1e-10
gi|1173069|sp|P11894|RK9_PEA 50S RIBOSOMAL PROTEIN L9, CHLOROPL... 66 2e-10
gi|71256|pir||R5PM9 ribosomal protein L9 precursor, chloroplast... 66 2e-10
gi|133028|sp|P25864|RK9_ARATH 50S RIBOSOMAL PROTEIN L9, CHLOROP... 64 7e-10
gi|2500245|sp|P56035|RL9_HELPY 50S RIBOSOMAL PROTEIN L9 >gi|231... 62 3e-09
gi|4155003|gb|AAD06044.1| (AE001480) 50S RIBOSOMAL PROTEIN L9 [... 62 3e-09
gi|6919964|sp|Q46398|RL9_CHLMU 50S RIBOSOMAL PROTEIN L9 62 3e-09
gi|2500246|sp|P75540|RL9_MYCPN 50S RIBOSOMAL PROTEIN L9 >gi|214... 58 5e-08
gi|6919965|sp|Q9Z6V3|RL9_CHLPN 50S RIBOSOMAL PROTEIN L9 >gi|437... 57 9e-08
gi|1350776|sp|P47339|RL9_MYCGE 50S RIBOSOMAL PROTEIN L9 >gi|136... 56 2e-07
gi|6968126|emb|CAB75296.1| (AL139075) 50S ribosomal protein L9 ... 54 8e-07
gi|1710478|sp|P51334|RK9_PORPU CHLOROPLAST 50S RIBOSOMAL PROTEI... 49 2e-05
gi|97274|pir||E37840 hypothetical protein 1 (S18 3' region) - C... 44 9e-04
gi|1076086|pir||S54813 probable chain length determinant - Stre... 43 0.001
gi|6899556|gb|AAF30964.1|AE002153_12 (AE002153) ribosomal prote... 42 0.003
gi|510723|gb|AAB36563.1| (AF126429) chain length determinant [S... 41 0.006
gi|5381248|dbj|BAA82310.1| (AB019690) Polyketide synthase [Acti... 39 0.022
gi|532246|gb|AAA65207.1| (L35560) daunorubicin-doxorubicin poly... 37 0.11
gi|1093564|prf||2104259F doxorubicin polyketide synthase [Strep... 37 0.11
gi|4416223|gb|AAD20268.1| (AF098965) chain length factor [Strep... 36 0.15
gi|585894|sp|P27151|RL9_THETH 50S RIBOSOMAL PROTEIN L9 36 0.15
gi|516110|gb|AAA87619.1| (L34880) polyketide synthase [Streptom... 35 0.33
gi|478157|pir||E48401 ribosomal protein L9 - Thermus aquaticus ... 35 0.33
gi|2580443|dbj|BAA23145.1| (D87924) ORF 2 [Actinomadura hibisca] 35 0.43
gi|406082|gb|AAA67434.1| (L24518) ardIorf2 gene product [Kibdel... 34 0.73
gi|729874|sp|P16539|KAS2_STRGA TETRACENOMYCIN C POLYKETIDE PUTA... 34 0.96
gi|4469321|emb|CAB38455.1| (X15312) put. ORF2 (AA 1-405) beta-k... 34 0.96
gi|37593|emb|CAA40338.1| (X57019) unnamed protein product [Homo... 32 2.8
gi|267193|sp|P30530|UFO_HUMAN TYROSINE-PROTEIN KINASE RECEPTOR ... 32 2.8
gi|6981696|ref|NP_037202.1|| utrophin (homologous to dystrophin... 31 4.9
gi|3242253|emb|CAB06099.1| (Z83857) ppsC [Mycobacterium tubercu... 31 4.9
gi|125240|sp|P16541|KAS2_STRVN GRANATICIN POLYKETIDE PUTATIVE B... 31 6.4
gi|94394|pir||PN0096 hypothetical 19K protein - potato virus M ... 31 8.3
gi|903608|gb|AAB03520.1| (U28498) flagellin [Borrelia hispanica] 31 8.3
>gi|133030|sp|P02418|RL9_ECOLI 50S RIBOSOMAL PROTEIN L9
>gi|1360971|pir||S56428 50S ribosomal chain protein L9 -
Escherichia coli >gi|42848|emb|CAA27655.1| (X04022)
ribosome protein L9 (aa 1-149) [Escherichia coli]
>gi|1790647|gb|AAC77160.1| (AE000491) 50S ribosomal
subunit protein >
Length = 149
Score = 142 bits (355), Expect = 1e-33
Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL KVANLG+LGD+V VK GY RNFL+P+G AVPAT+ N+ F+A+RAE EAK
Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60
Query: 181 ELDQAQARAAKFEG-ASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEG 357
L A ARA K +VT+++ A EGKL+GS+G RDIA+A TA G+ + K EV L G
Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
R GE++V +H++V + V V V
Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNV 146
>gi|1173067|sp|P44349|RL9_HAEIN 50S RIBOSOMAL PROTEIN L9
>gi|1075259|pir||D64076 ribosomal protein L9 (rpL9)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573529|gb|AAC22202.1| (U32736) ribosomal protein L9
(rpL9) [Haemophilus influenzae Rd]
Length = 149
Score = 142 bits (354), Expect = 2e-33
Identities = 72/145 (49%), Positives = 103/145 (70%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL K+ +LG +GD+V VK G+ RNFL+P+G AV AT+AN+ F+A+RAE EA A +
Sbjct: 1 MQVILLDKIVHLGQVGDQVNVKSGFARNFLIPQGKAVMATKANIEHFEARRAELEATAAA 60
Query: 181 ELDQAQARAAKFEG-ASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEG 357
L AQARAA+ SVT+++ A EG+L+G++ RD+AEA TA G+ + K EV L G
Sbjct: 61 NLAAAQARAAEVTALGSVTIASKAGDEGRLFGAITTRDVAEAVTAAGVKIAKSEVRLPNG 120
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
P R +G++DV LH +V + + VIV
Sbjct: 121 PIRTLGDHDVRFQLHGEVFAALDVIV 146
>gi|3122741|sp|O07816|RL9_NEIGO 50S RIBOSOMAL PROTEIN L9
>gi|2196760|gb|AAB61231.1| (AF003196) ribosomal protein
L9 [Neisseria gonorrhoeae]
Length = 150
Score = 131 bits (325), Expect = 5e-30
Identities = 70/145 (48%), Positives = 91/145 (62%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL+K+ LG LGD VTVK GY RNFL+P G A ATEAN+ F+A+RAE EAK
Sbjct: 1 MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANMKEFEARRAELEAKQAE 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
L A+AR K +G +VTV+ A +G+ GSV DIA A A G+ K V L GP
Sbjct: 61 ILADARARQEKLDGQTVTVAQKAGVDGRHNGSVTNADIAAAIVAAGIEAVKANVRLPNGP 120
Query: 361 FRLIGEYDVLLHLHADVESTVKVIV 435
+ +GEY+V + LH D + + V V
Sbjct: 121 LKAVGEYEVEVALHTDAVAKITVAV 145
>gi|71255|pir||R5EC9 ribosomal protein L9 - Escherichia coli
>gi|223572|prf||0901235A protein L9 [Escherichia coli]
Length = 148
Score = 129 bits (322), Expect = 1e-29
Identities = 78/148 (52%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL KVANLG+LGD+V VK GY RNFL+P+G AVPAT+ N+ F+A+RAE EAK
Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60
Query: 181 ELDQAQARAAKFEG-ASVTVSAHASTEGKLYGSVGARDIAEAFTAV-GLPLEKKEVILGE 354
L A ARA K +VT+++ A EGKL+GS+G RDIA+A TA G+ + K EV L
Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAADGVEVAKSEVRLPN 120
Query: 355 GPFRLIGEYDVLLHLHADVESTVKVIVQGV 444
G R GE +V +H E KVIV V
Sbjct: 121 GVLRTHGE-EVSFQVH---EVFAKVIVNVV 146
>gi|6226012|sp|O68128|RL9_RHOCA 50S RIBOSOMAL PROTEIN L9
>gi|3128366|gb|AAC16218.1| (AF010496) 50S ribosomal
protein l9 [Rhodobacter capsulatus]
Length = 222
Score = 125 bits (311), Expect = 2e-28
Identities = 66/145 (45%), Positives = 98/145 (67%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL++VA LG +GD V V+ GY RNFLLP+G A+ A +AN+ +F+A++A+ EA+
Sbjct: 1 MQVILLERVAKLGQMGDVVKVRDGYARNFLLPQGKALRANDANIKSFEARKAQLEARNLE 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
+A+A AAK EG V AS G LYGSV RD AEA TA G ++K++V L + P
Sbjct: 61 TKKEAEAAAAKLEGQKFVVIRSASDAGALYGSVTPRDAAEAATAGGFSVDKRQVAL-KAP 119
Query: 361 FRLIGEYDVLLHLHADVESTVKVIV 435
+ +G +DV + LH +V++T+ + V
Sbjct: 120 IKELGLHDVHVILHPEVQATITINV 144
>gi|5870823|gb|AAD54599.1|AF178080_1 (AF178080) ribosomal protein
L9; RplI [Salmonella typhimurium]
Length = 129
Score = 123 bits (306), Expect = 8e-28
Identities = 64/107 (59%), Positives = 80/107 (73%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL KVANLG+LGD+V VK GY RNFL+PKG AVPAT+ N+ F+A+RAE EAK
Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPKGKAVPATKKNVEYFEARRAELEAKLAD 60
Query: 181 ELDQAQARAAKFEG-ASVTVSAHASTEGKLYGSVGARDIAEAFTAVGL 321
L A ARA K +VT+++ A EGKL+GS+G RDIA+A TA GL
Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGL 108
>gi|6647726|sp|O67830|RL9_AQUAE 50S RIBOSOMAL PROTEIN L9
>gi|2984267|gb|AAC07793.1| (AE000769) ribosomal protein
L09 [Aquifex aeolicus]
Length = 149
Score = 106 bits (262), Expect = 1e-22
Identities = 57/146 (39%), Positives = 84/146 (57%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M+++L++ V LG GD V VK GY N+L+P+G+A+PATE N+ Q A+ E K
Sbjct: 1 MKVVLVKDVEGLGFFGDVVNVKDGYAMNYLIPRGLALPATEGNIKHIQTILAQKERKLLR 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
E +A+ A K EG + + A GKL+GSV DI A G+ +E+K V+ P
Sbjct: 61 EKKKAEELAKKLEGMVIGIKKPAGEGGKLFGSVTPADIVNALKEKGIEIERKNVVFYH-P 119
Query: 361 FRLIGEYDVLLHLHADVESTVKVIVQ 438
+ +G + V + LH DVE +KV V+
Sbjct: 120 IKEVGVFPVKIRLHKDVEVDIKVDVK 145
>gi|6739550|gb|AAF27298.1|AF146075_4 (AF146075) ribosomal protein L9
[Thermus thermophilus]
Length = 148
Score = 97.1 bits (238), Expect = 7e-20
Identities = 63/145 (43%), Positives = 90/145 (61%), Gaps = 2/145 (1%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL+ + NLG +G V VKPGY RN+LLP+G+AV ATE+NL A +A R +AK +
Sbjct: 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEA-RIRAQAKRLA 59
Query: 181 ELDQAQARAAK-FEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV-GLPLEKKEVILGE 354
E R K E ++T+ A E K+YGSV A+DIAEA + G+ ++ K + L E
Sbjct: 60 ERKAEAERLKKILENLTLTIPVRAG-ETKIYGSVTAKDIAEALSRQHGVTIDPKRLAL-E 117
Query: 355 GPFRLIGEYDVLLHLHADVESTVKVIV 435
P + +GEY + H +V +KV V
Sbjct: 118 KPIKELGEYVLTYKPHPEVPIQLKVSV 144
>gi|6457768|gb|AAF09694.1|AE001873_4 (AE001873) ribosomal protein L9
[Deinococcus radiodurans]
Length = 146
Score = 91.3 bits (223), Expect = 4e-18
Identities = 48/145 (33%), Positives = 88/145 (60%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL+ + LG G+ V+VK GY RN+L+P+G+AV AT N+ +A+ E +
Sbjct: 1 MQVILLEP-SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQ 59
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
E A+ A++ G +V +S A EGK+YG+V +D+A + +G ++++++ + +
Sbjct: 60 EKAVAEDLASRLNGVAVELSVRAG-EGKIYGAVTHQDVANSLDQLGFDVDRRKIDMPK-T 117
Query: 361 FRLIGEYDVLLHLHADVESTVKVIV 435
+ +GEYD+ H +V +K++V
Sbjct: 118 VKEVGEYDIAYRAHPEVTIPMKLVV 142
>gi|39817|emb|CAA43972.1| (X62002) ribosomal protein L9 [Bacillus
stearothermophilus] >gi|227967|prf||1714237A ribosomal
protein L9 [Bacillus stearothermophilus]
Length = 148
Score = 90.5 bits (221), Expect = 7e-18
Identities = 53/145 (36%), Positives = 87/145 (59%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++I L+ V G G+ V GY NFL +G+A+ AT ANL A +A++ + + +A
Sbjct: 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAE 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV-GLPLEKKEVILGEG 357
EL A+ + E +VT+ A A G+L+GS+ ++ IAE+ A GL L+K+++ L +
Sbjct: 61 ELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA 120
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
R +G +V + LH +V +T+KV V
Sbjct: 121 -IRALGYTNVPVKLHPEVTATLKVHV 145
>gi|133029|sp|P02417|RL9_BACST 50S RIBOSOMAL PROTEIN L9 (BL17)
>gi|279653|pir||R5BS7F ribosomal protein L9 - Bacillus
stearothermophilus >gi|1942714|pdb|1DIV| Ribosomal
Protein L9
Length = 149
Score = 90.5 bits (221), Expect = 7e-18
Identities = 53/145 (36%), Positives = 87/145 (59%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++I L+ V G G+ V GY NFL +G+A+ AT ANL A +A++ + + +A
Sbjct: 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAE 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV-GLPLEKKEVILGEG 357
EL A+ + E +VT+ A A G+L+GS+ ++ IAE+ A GL L+K+++ L +
Sbjct: 61 ELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA 120
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
R +G +V + LH +V +T+KV V
Sbjct: 121 -IRALGYTNVPVKLHPEVTATLKVHV 145
>gi|143421|gb|AAA22701.1| (M57623) ribosomal protein L9 [Bacillus
stearothermophilus]
Length = 149
Score = 88.5 bits (216), Expect = 3e-17
Identities = 52/145 (35%), Positives = 86/145 (58%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++I + V G G+ V GY NFL +G+A+ AT ANL A +A++ + + +A
Sbjct: 1 MKVIFXKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAE 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV-GLPLEKKEVILGEG 357
EL A+ + E +VT+ A A G+L+GS+ ++ IAE+ A GL L+K+++ L +
Sbjct: 61 ELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA 120
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
R +G +V + LH +V +T+KV V
Sbjct: 121 -IRALGYTNVPVKLHPEVTATLKVHV 145
>gi|3914765|sp|O51139|RL9_BORBU 50S RIBOSOMAL PROTEIN L9
>gi|2687991|gb|AAC66494.1| (AE001123) ribosomal protein
L9 (rplI) [Borrelia burgdorferi]
Length = 173
Score = 88.5 bits (216), Expect = 3e-17
Identities = 45/146 (30%), Positives = 80/146 (53%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++IL + NLG GD V V+ G+ RN+LLPKG AV + + N+ F KR K ++
Sbjct: 1 MKVILKEDFINLGKEGDTVEVRDGFARNYLLPKGFAVFSNKHNIEIFNQKRRSILKKQEA 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
+ A +K + + ++ GKL+ S+ + +IA+ +G +E+K++ + G
Sbjct: 61 KKQMANDLKSKLDLVKLEFFMKSNDSGKLFHSINSLNIADELLKLGFDIERKKIDIHHGT 120
Query: 361 FRLIGEYDVLLHLHADVESTVKVIVQ 438
+ G YDV + L+ + S +KV ++
Sbjct: 121 LKTFGTYDVTIKLYEGISSIIKVEIK 146
>gi|2829553|sp|P71713|RL9_MYCTU 50S RIBOSOMAL PROTEIN L9
>gi|1568595|emb|CAB02534.1| (Z80775) rplI [Mycobacterium
tuberculosis]
Length = 152
Score = 87.0 bits (212), Expect = 8e-17
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATE-ANLAAFQAKRAEYEAKAK 177
M+LIL V +LG++GD V VK GYGRNFLLP+G+A+ A+ A A + +RA E K+
Sbjct: 1 MKLILTADVDHLGSIGDTVEVKDGYGRNFLLPRGLAIVASRGAQKQADEIRRAR-ETKSV 59
Query: 178 SELDQAQARAAKFE--GASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLP-LEKKEVIL 348
+L+ A A E G ++ GKL+GSV A D+ A G P L+K+ V L
Sbjct: 60 RDLEHANEIKAAIEALGPIALPVKTSADSGKLFGSVTAADVVAAIKKAGGPNLDKRIVRL 119
Query: 349 GEGPFRLIGEYDVLLHLH--ADVESTVKVIVQ 438
+ + +G + V +HLH DVE ++ V+ Q
Sbjct: 120 PKTHIKAVGTHFVSVHLHPEIDVEVSLDVVAQ 151
>gi|4808405|emb|CAB42737.1| (AL049826) putative 50S ribosomal
protein L9 [Streptomyces coelicolor A3(2)]
Length = 148
Score = 86.6 bits (211), Expect = 1e-16
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++IL +V+ LGA GD V VK GY RN+L+P+ A+ T+ + R +
Sbjct: 1 MKIILTHEVSGLGAAGDVVDVKDGYARNYLIPRKFAIRWTKGGEKDVEQIRRARKIHEIQ 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLP-LEKKEVILGEG 357
++QA A+ EG V ++ + G+L+GSV D+A A A G P ++K+ + LG
Sbjct: 61 TIEQANQVKAQLEGVKVRLAVRSGDAGRLFGSVTPADVASAIKAAGGPEVDKRRIELG-S 119
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
P + +G ++ + LH +V++ V + V
Sbjct: 120 PIKTLGAHETSVRLHPEVDAKVSIEV 145
>gi|6094101|sp|O83099|RL9_TREPA 50S RIBOSOMAL PROTEIN L9
>gi|3322318|gb|AAC65055.1| (AE001191) ribosomal protein
L9 (rplI) [Treponema pallidum]
Length = 156
Score = 85.4 bits (208), Expect = 2e-16
Identities = 46/146 (31%), Positives = 77/146 (52%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++IL Q V LG GD V GY RN+L P+ +AVP +A F+ ++ + E +
Sbjct: 1 MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKSL 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
+ A A+ E V ++ A T GKLYG+V + +AE +G +E+K V +
Sbjct: 61 KRQDAANLKARLEAQPVVIAMPAGTNGKLYGAVTSHTVAEQLACMGFEVERKRVEVPGLT 120
Query: 361 FRLIGEYDVLLHLHADVESTVKVIVQ 438
+ +G Y V + L+ ++ + V V ++
Sbjct: 121 LKCVGNYHVTIRLYEEICAVVPVTIK 146
>gi|133034|sp|P25904|RL9_SYNEN 50S RIBOSOMAL PROTEIN L9
>gi|97627|pir||S22206 ribosomal protein L9 -
Synechococcus sp >gi|47582|emb|CAA45301.1| (X63765)
ribosomal protein RL9 [Synechococcus sp.]
Length = 152
Score = 82.3 bits (200), Expect = 2e-15
Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANL---AAFQAKRAEYEAK 171
++++L + V LG +G V V PGY RN+L P+G+A PAT + L Q K + A
Sbjct: 5 VQVVLNETVNKLGRMGQVVEVAPGYARNYLFPRGIAEPATPSALRRVERLQEKERQRLAA 64
Query: 172 AKSELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV-GLPLEKKEVIL 348
KS ++ +A K A++T+S + L+GSV +D+A+A A+ G ++++E+IL
Sbjct: 65 LKSIAEKQKATLEKL--ATITISMPVGEKDMLFGSVTPQDVADAIQAITGETIDRREMIL 122
Query: 349 GEGPFRLIGEYDVLLHLHADVESTVKVIVQGV 444
E R +G Y + LH +V TVK+ +Q V
Sbjct: 123 PE--IRKLGTYTAEIKLHPEV--TVKLNIQVV 150
>gi|1173068|sp|P46385|RL9_MYCLE 50S RIBOSOMAL PROTEIN L9
>gi|2959409|emb|CAA17951.1| (AL022118) 50s ribosomal
protein l9 [Mycobacterium leprae]
>gi|886303|gb|AAB53119.1| (L39923) 50S ribosomal protein
L9 [Mycobacterium leprae]
Length = 152
Score = 82.3 bits (200), Expect = 2e-15
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATE-ANLAAFQAKRAEYEAKAK 177
M+LIL V +LG++GD V VK GYGRNFLLP G+A+ A+ A A + +RA E KA
Sbjct: 1 MKLILTADVDHLGSVGDTVEVKDGYGRNFLLPHGLAIVASRGAQRQADEIRRAR-ETKAM 59
Query: 178 SELDQAQARAAKFE--GASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLP-LEKKEVIL 348
+ + A E G+ + GKL+GSV A D+ A G P L+K+ V L
Sbjct: 60 RDREHANEIKVAIEALGSVSLPMKTVADSGKLFGSVTAGDVVAAIKKAGGPNLDKRIVRL 119
Query: 349 GEGPFRLIGEYDVLLHLHADVESTV 423
+ + +G + V +HLH +V+ V
Sbjct: 120 PKTHIKAVGTHPVSVHLHPEVDVVV 144
>gi|223251|prf||0701226A ribosomal protein L17 [Bacillus
stearothermophilus]
Length = 147
Score = 81.9 bits (199), Expect = 3e-15
Identities = 53/145 (36%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++I L+ V G G+ V GY NFL +G+A+ AT ANL A +A++ + + +A +
Sbjct: 1 MKVIFLKDVKGKGKKGEIKNVADGYA-NFLFKQGLAIEATPANLKALEAQKQKEQRQA-A 58
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV-GLPLEKKEVILGEG 357
EL A+ + E +VT+ A A G+L+GS+ ++ IAE+ A GL L+K+++ L +
Sbjct: 59 ELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA 118
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
R +G +V + LH +V +T+KV V
Sbjct: 119 -IRALGYTNVPVKLHPEVTATLKVHV 143
>gi|585893|sp|P37437|RL9_BACSU 50S RIBOSOMAL PROTEIN L9 (BL17)
>gi|2127195|pir||S65975 ribosomal protein L9 - Bacillus
subtilis >gi|2636597|emb|CAB16087.1| (Z99124) ribosomal
protein L9 [Bacillus subtilis]
>gi|467335|dbj|BAA05181.1| (D26185) ribosomal protein L9
[Bacillus subtilis]
Length = 149
Score = 81.9 bits (199), Expect = 3e-15
Identities = 48/146 (32%), Positives = 87/146 (58%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++I LQ V G G+ V GY NFL+ KG+AV A +N++A ++ + + +A +
Sbjct: 1 MKVIFLQDVKGKGKKGEVKNVADGYAHNFLIKKGLAVEANASNISALNGQKQKEKKEAIA 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTA-VGLPLEKKEVILGEG 357
EL+QA++ E +V +SA + G+L+GSV ++ I E + ++K+++ L +G
Sbjct: 61 ELEQAKSLKETLEKLTVELSAKSGEGGRLFGSVTSKQITEQLQKDHNIKVDKRKLELPDG 120
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIVQ 438
R +G +V + LH +V++ +KV V+
Sbjct: 121 -IRALGYTNVPVKLHPEVQAVLKVHVK 146
>gi|6226013|sp|Q9ZEA4|RL9_RICPR 50S RIBOSOMAL PROTEIN L9
>gi|3860611|emb|CAA14512.1| (AJ235270) 50S RIBOSOMAL
PROTEIN L9 (rplI) [Rickettsia prowazekii]
Length = 171
Score = 78.0 bits (189), Expect = 4e-14
Identities = 46/145 (31%), Positives = 80/145 (54%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
ME+IL++ V LG +GD + V G+GRN+LLP+ +A+ AT++N ++ E+E K K
Sbjct: 1 MEVILIKPVRKLGKIGDILKVADGFGRNYLLPQKLAIRATKSNKELIVKQKYEFEEKDKQ 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTA-VGLPLEKKEVILGEG 357
++ + + + S + KL+GSV +DIA+ + + + +IL +
Sbjct: 61 VREEVEKINTIIKDQQLVFIRQTSDDCKLFGSVTNKDIADKLSKNISYNISHSNIIL-DK 119
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
+ G Y V + LHA++ S V V+V
Sbjct: 120 QIKSTGIYTVEIRLHAELTSIVTVVV 145
>gi|4981398|gb|AAD35945.1|AE001753_1 (AE001753) ribosomal protein L9
[Thermotoga maritima]
Length = 149
Score = 71.8 bits (173), Expect = 3e-12
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL+ V +G G+ V GY RN+L+P+G A TE A + ++ + K +
Sbjct: 1 MKVILLRDVPKIGKKGEIKEVSDGYARNYLIPRGFAKEYTEGLERAIKHEKEIEKRKKER 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFT-AVGLPLEKKEVILGEG 357
E ++++ + + + V A GK++G+V A +AE + GL L+K+ L +
Sbjct: 61 EREESEKILKELKKRTHVVKVKAGEGGKIFGAVTAATVAEEISKTTGLKLDKRWFKL-DK 119
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIVQ 438
P + +GEY + + L V+ T+K+ V+
Sbjct: 120 PIKELGEYSLEVSLPGGVKDTIKIRVE 146
>gi|1173070|sp|P42352|RL9_SYNY3 50S RIBOSOMAL PROTEIN L9
>gi|485508|pir||S33614 ribosomal protein L9 -
Synechocystis sp. (PCC 6803) >gi|217101|dbj|BAA38819.1|
(D10716) 50S ribosomal protein L9 [Synechocystis sp.]
>gi|1653258|dbj|BAA18173.1| (D90912) 50S ribosomal
protein L9 [Synechoc>
Length = 172
Score = 70.2 bits (169), Expect = 9e-12
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
++++L + + LG GD V V PGY RN+L+PKG+ V AT L + +R + + K+
Sbjct: 25 VKVVLNETINKLGFTGDLVEVAPGYARNYLIPKGLGVVATPGILRQVEQRRLKELERLKA 84
Query: 181 ELDQAQARAAKFEG-ASVTVSAHASTEGKLYGSVGARDIAEAF-TAVGLPLEKKEVILGE 354
E D A+AR E + ++G+V +++A+A A L+++ + L +
Sbjct: 85 EKDAAEARKVALETIGRFVIKKQVGEAEAIFGTVTTQEVADAVEAATNQSLDRRGISLPD 144
Query: 355 GPFRLIGEYDVLLHLHADVESTVKVIV 435
G Y + LH +V +TV+V V
Sbjct: 145 --IHKTGFYQAQIKLHPEVIATVEVQV 169
>gi|6919963|sp|O84809|RL9_CHLTR 50S RIBOSOMAL PROTEIN L9
>gi|3329269|gb|AAC68398.1| (AE001352) L9 Ribosomal
Protein [Chlamydia trachomatis]
Length = 167
Score = 66.7 bits (160), Expect = 1e-10
Identities = 46/145 (31%), Positives = 70/145 (47%), Gaps = 1/145 (0%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYE-AKAKS 180
+L+LL+ V LG GD V KPGY RN+LLPKG AV A+ L QAK E +A +
Sbjct: 4 QLLLLEDVDGLGRSGDLVVAKPGYVRNYLLPKGKAVVASAGTL-RLQAKLQEQRLLQAAA 62
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
+ +++ A + +E +YGSV D+ A G+ L +K
Sbjct: 63 DKEESLRLAEMLRSIVLDFQVRVDSENNMYGSVTVNDMISAAEQQGVVLTRKNFPRSHSG 122
Query: 361 FRLIGEYDVLLHLHADVESTVKVIVQ 438
+ +G + V L L V + + + V+
Sbjct: 123 IKNLGRHVVGLKLKEGVTADLHLEVR 148
>gi|1173069|sp|P11894|RK9_PEA 50S RIBOSOMAL PROTEIN L9, CHLOROPLAST
PRECURSOR (CL13) >gi|20881|emb|CAA32184.1| (X14019) CL9
ribosomal preprotein (AA -34 to 160) [Pisum sativum]
Length = 194
Score = 66.0 bits (158), Expect = 2e-10
Identities = 47/144 (32%), Positives = 72/144 (49%), Gaps = 1/144 (0%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSE 183
++IL + + N+G G+ + V+ G+ RNFL P G A T L + + EA+ +
Sbjct: 48 KIILKEDIVNVGKKGELLDVRVGFFRNFLFPSGKAQLVTPGVLKEMKIEEERIEAEKRRV 107
Query: 184 LDQAQARAAKFEGASVTVSAHASTEGK-LYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
L++AQ A FE +GK ++GSV A+D+ + A L E + I+
Sbjct: 108 LEEAQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDLVDIIKA-QLQREVDKRIVNLPE 166
Query: 361 FRLIGEYDVLLHLHADVESTVKVIV 435
R GEY L LH DV + V+V V
Sbjct: 167 IRETGEYIAELKLHPDVTAKVRVNV 191
>gi|71256|pir||R5PM9 ribosomal protein L9 precursor, chloroplast -
garden pea
Length = 194
Score = 66.0 bits (158), Expect = 2e-10
Identities = 47/144 (32%), Positives = 72/144 (49%), Gaps = 1/144 (0%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSE 183
++IL + + N+G G+ + V+ G+ RNFL P G A T L + + EA+ +
Sbjct: 48 KIILKEDIVNVGKKGELLDVRVGFFRNFLFPSGKAQLVTPGVLKEMKIEEERIEAEKRRV 107
Query: 184 LDQAQARAAKFEGASVTVSAHASTEGK-LYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
L++AQ A FE +GK ++GSV A+D+ + A L E + I+
Sbjct: 108 LEEAQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDLVDIIKA-QLQREVDKRIVNLPE 166
Query: 361 FRLIGEYDVLLHLHADVESTVKVIV 435
R GEY L LH DV + V+V V
Sbjct: 167 IRETGEYIAELKLHPDVTAKVRVNV 191
>gi|133028|sp|P25864|RK9_ARATH 50S RIBOSOMAL PROTEIN L9, CHLOROPLAST
PRECURSOR (CL9) >gi|71257|pir||R5MUL9 ribosomal protein
L9 precursor, chloroplast - Arabidopsis thaliana
>gi|16499|emb|CAA77480.1| (Z11129) plastid ribosomal
protein CL9 [Arabidopsis thaliana]
>gi|16501|emb|CAA7759>
Length = 197
Score = 64.0 bits (153), Expect = 7e-10
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSE 183
++IL + V +LG G + VK G+ RNFLLP G A T L + + EA+ +
Sbjct: 51 KVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRV 110
Query: 184 LDQAQARAAKFEGASVTVSAHASTEGKL-YGSVGARDIAEAF-TAVGLPLEKKEVILGEG 357
++AQ A F+ +GKL +GSV A+D+ + + + ++K+ V L E
Sbjct: 111 KEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPE- 169
Query: 358 PFRLIGEYDVLLHLHADVESTVKVIV 435
R GEY L LH DV + VK+ V
Sbjct: 170 -IRETGEYIAELKLHPDVTARVKINV 194
>gi|2500245|sp|P56035|RL9_HELPY 50S RIBOSOMAL PROTEIN L9
>gi|2313629|gb|AAD07582.1| (AE000566) ribosomal protein
L9 (rpl9) [Helicobacter pylori 26695]
Length = 150
Score = 62.1 bits (148), Expect = 3e-09
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQA---KRAEYEAK 171
M+++LL+ V NLG G+ VK GYG NFL+ A AT + ++A K+AE EA
Sbjct: 2 MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEAL 61
Query: 172 AKSELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTA--VGLPLEKKEVI 345
K+ Q + ++T+ G L+G++ +I E L L+KK++
Sbjct: 62 EKA---QKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKDIE 118
Query: 346 LGEGPFRLIGEYDVLLHLHADVESTVKVIV 435
L + P + G Y++ + L + V K+ V
Sbjct: 119 L-KHPIKSTGIYEIEVKLGSGVVGVFKIDV 147
>gi|4155003|gb|AAD06044.1| (AE001480) 50S RIBOSOMAL PROTEIN L9
[Helicobacter pylori J99]
Length = 149
Score = 62.1 bits (148), Expect = 3e-09
Identities = 44/145 (30%), Positives = 74/145 (50%), Gaps = 5/145 (3%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQA---KRAEYEAK 171
M+++LL+ V NLG G+ VK GYG NFL+ A AT + ++A K+AE EA
Sbjct: 1 MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEAL 60
Query: 172 AKSELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTA--VGLPLEKKEVI 345
K+ Q + ++T+ G L+G++ +I E L L+KK++
Sbjct: 61 EKA---QKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKDIE 117
Query: 346 LGEGPFRLIGEYDVLLHLHADVESTVKVIV 435
L + P + G Y++ + L + + K+ V
Sbjct: 118 L-KHPIKSTGIYEIEVKLGSGIAGVFKIDV 146
>gi|6919964|sp|Q46398|RL9_CHLMU 50S RIBOSOMAL PROTEIN L9
Length = 161
Score = 61.7 bits (147), Expect = 3e-09
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYE-AKAKS 180
+L+L + V LG GD V KPGY N+LLPKG AV A+ L QAK E +A +
Sbjct: 4 QLLLPEDVDGLGRSGDLVVAKPGYVXNYLLPKGKAVVASAGTLRX-QAKLQEQRLLQAAA 62
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
+ +++ A + +E +YGSV DI G+ L +K
Sbjct: 63 DKEESLRLAETLRSLVLDFQVRVDSENNMYGSVTVNDIISVADQKGVVLTRKNFPRAHSG 122
Query: 361 FRLIGEYDVLLHLHADVESTVKVIVQ 438
+ +G++ + L L V + + + V+
Sbjct: 123 VKTLGKHVIGLKLKEGVTADLHLEVR 148
>gi|2500246|sp|P75540|RL9_MYCPN 50S RIBOSOMAL PROTEIN L9
>gi|2146619|pir||S73926 ribosomal protein L9 -
Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1674302|gb|AAB96248.1| (AE000058) Mycoplasma
pneumoniae, ribosomal protein L9; similar to Swiss-Prot
Accession Number P02417, from B. >
Length = 149
Score = 57.8 bits (137), Expect = 5e-08
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++IL Q V+NLG D V VK GY +FL PK +A P T+ +L R + K +
Sbjct: 1 MKVILKQDVSNLGKRFDVVDVKDGYAIHFLFPKKLAAPLTKKSL----QDRDLFLKKQQE 56
Query: 181 ELDQAQARAAKFEGASVTVSAHASTE---GKLYGSVGARDIAEAFTAVGLPLEKKEVILG 351
+ +A + K + H S + G+ YGS+ + I G+ L+K +
Sbjct: 57 HYEINKALSHKLKEVIEQTELHFSLKEHNGRPYGSIITKQIINQAHTKGMALQK---FMF 113
Query: 352 EGPFRL-IGEYDVLLHLHADVESTVKVIV 435
+ RL G++++ LH+ D + +KV V
Sbjct: 114 KDNVRLGFGDHEITLHIFEDTTAVLKVKV 142
>gi|6919965|sp|Q9Z6V3|RL9_CHLPN 50S RIBOSOMAL PROTEIN L9
>gi|4377278|gb|AAD19091.1| (AE001675) L9 Ribosomal
Protein [Chlamydophila pneumoniae]
Length = 169
Score = 57.0 bits (135), Expect = 9e-08
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYE-AKAKS 180
+L+LL+ V LG GD +T +PGY RN+L+PK AV A L QAK E +A +
Sbjct: 4 QLLLLEDVDGLGRSGDLITARPGYVRNYLIPKKKAVIAGAGTL-RLQAKLKEQRLIQAAA 62
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
+ ++ A + + + +YGSV DI + L +K
Sbjct: 63 DKADSERIAQALKDIVLEFQVRVDPDNNMYGSVTIADIIAEAAKKNIFLVRKNFPHAHYA 122
Query: 361 FRLIGEYDVLLHLHADVESTVKVIV 435
+ +G+ ++ L L +V +T+ V V
Sbjct: 123 IKNLGKKNIPLKLKEEVTATLLVEV 147
>gi|1350776|sp|P47339|RL9_MYCGE 50S RIBOSOMAL PROTEIN L9
>gi|1361821|pir||C64210 ribosomal protein L9 -
Mycoplasma genitalium (SGC3) >gi|3844680|gb|AAC71311.1|
(U39689) ribosomal protein L9 (rpL9) [Mycoplasma
genitalium]
Length = 150
Score = 56.2 bits (133), Expect = 2e-07
Identities = 46/145 (31%), Positives = 72/145 (48%), Gaps = 7/145 (4%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++IL Q VA LG D V VK G+ +FL PK +A P T+ +A + K
Sbjct: 1 MKIILKQDVAKLGKRFDVVEVKDGFAIHFLFPKKLAAPLTKKAIA-------NRDLFLKQ 53
Query: 181 ELDQAQARAAKFEGASVTVSAHAST------EGKLYGSVGARDIAEAFTAVGLPLEKKEV 342
+ +Q Q A E + + T +GK YGS+ + I L L++
Sbjct: 54 QQEQYQKNRALAEKLKLVIEQTPLTFQLKQHDGKPYGSIITKQIINLAKQQRLDLQR--- 110
Query: 343 ILGEGPFRL-IGEYDVLLHLHADVESTVKVIV 435
+ + RL GE+ ++LHL ++ +T+ VIV
Sbjct: 111 FMFKDNVRLQFGEHKLILHLFEEITATLTVIV 142
>gi|6968126|emb|CAB75296.1| (AL139075) 50S ribosomal protein L9
[Campylobacter jejuni]
Length = 147
Score = 53.9 bits (127), Expect = 8e-07
Identities = 29/101 (28%), Positives = 51/101 (49%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M+++L++ V LG G+ VK GYG+NFL+ KG A AT L +++ + + +
Sbjct: 1 MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVLRKYESDKKKEAENLRF 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEA 303
E+ + + ++ +S G L+G V +IA A
Sbjct: 61 EIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHA 101
>gi|1710478|sp|P51334|RK9_PORPU CHLOROPLAST 50S RIBOSOMAL PROTEIN L9
>gi|2148020|pir||S73255 ribosomal protein L9 - Porphyra
purpurea chloroplast >gi|1276800|gb|AAC08220.1| (U38804)
50S ribosomal protein L9 [Porphyra purpurea]
Length = 155
Score = 49.2 bits (115), Expect = 2e-05
Identities = 36/145 (24%), Positives = 72/145 (48%), Gaps = 7/145 (4%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANL------AAFQAKRAEY 162
++++L + + LG D V V GY RNFL+P +A AT L AA + K+ +
Sbjct: 6 IQVVLKENIQKLGKSNDVVKVATGYARNFLIPNKMASVATVGMLNQQKLYAAIKEKKIIF 65
Query: 163 EAKAKSELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAF-TAVGLPLEKKE 339
+ + Q KF ++S ++GSV ++I++ + ++K+
Sbjct: 66 AKENARKTQQLLEEIQKF-----SISKKTGDGETIFGSVTEKEISQIIKNTTNVDIDKQN 120
Query: 340 VILGEGPFRLIGEYDVLLHLHADVESTVKVIV 435
+++ E + IG Y++ + L V + +++ V
Sbjct: 121 ILIPE--IKTIGLYNIEIKLFNQVTANIQLQV 150
>gi|97274|pir||E37840 hypothetical protein 1 (S18 3' region) -
Chlamydia trachomatis >gi|144515|gb|AAA23135.1| (M62820)
putative heat shock protein [Chlamydia muridarum]
Length = 85
Score = 43.8 bits (101), Expect = 9e-04
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANL 132
+L+L + V LG GD V KPGY N+LLPKG AV A+ L
Sbjct: 4 QLLLPEDVDGLGRSGDLVVAKPGYVXNYLLPKGKAVVASAGTL 46
>gi|1076086|pir||S54813 probable chain length determinant -
Streptomyces fradiae >gi|809106|emb|CAA60570.1| (X87093)
putative chain length determinant [Streptomyces fradiae]
Length = 408
Score = 43.0 bits (99), Expect = 0.001
Identities = 38/136 (27%), Positives = 63/136 (45%), Gaps = 5/136 (3%)
Frame = +1
Query: 34 LGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARAAK 213
+ G + +PG GR L K + + +A A + +A A ELD+ +A A
Sbjct: 259 IAGYGSTLDPRPGSGRPAGLRKAIELALADAGAAPEEIDVVFADAAAVPELDRIEAEALT 318
Query: 214 --FEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGPFRLIGEYDV 387
F +V V+A + G+LY D+A AF A+ + V + P ++D+
Sbjct: 319 QVFGARAVPVTAPKTMTGRLYSGAAPLDLAAAFLAMRDGVVPPSVGVSPSP-----DHDL 373
Query: 388 LLHLHADVESTVK---VIVQG 441
L +H + TV+ VI +G
Sbjct: 374 DLVVHQERAMTVRSALVIARG 394
>gi|6899556|gb|AAF30964.1|AE002153_12 (AE002153) ribosomal protein
L9 [Ureaplasma urealyticum]
Length = 145
Score = 41.8 bits (96), Expect = 0.003
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 MELILLQKVANLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKS 180
M++ILL+ +A+LG + + V GY +NFL+ + AV T + A EA+ +
Sbjct: 1 MKVILLEDIASLGKKNEIIDVSDGYAKNFLIRQKKAVALTNKSQEVLNKDLAILEAQEQQ 60
Query: 181 ELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGP 360
+ A K E + + + +GS+ + I + + K + P
Sbjct: 61 AILDATLLKDKLEQKPLQFFLKTNNL-QTFGSISNKQIIDEINKEQKFITKHMI---TKP 116
Query: 361 FRL-IGEYDVLLHLHADVESTVKVIV 435
L IGE+ V + LH V + + VIV
Sbjct: 117 HALGIGEHIVEILLHKKVTAKLHVIV 142
>gi|510723|gb|AAB36563.1| (AF126429) chain length determinant
[Streptomyces venezuelae]
Length = 404
Score = 41.0 bits (94), Expect = 0.006
Identities = 29/94 (30%), Positives = 43/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 34 LGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARA-- 207
+ G +PG GR L K + + +A A +A A ELD+ +A A
Sbjct: 255 IAGYGSTFDPRPGSGREPGLRKAIELALADAGAAPGDIDVVFADAAAVPELDRVEAEALN 314
Query: 208 AKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV 315
A F +V V+A + G+LY D+A AF A+
Sbjct: 315 AVFGTGAVPVTAPKTMTGRLYSGAAPLDLAAAFLAM 350
>gi|5381248|dbj|BAA82310.1| (AB019690) Polyketide synthase
[Actinomadura verrucosospora]
Length = 460
Score = 39.1 bits (89), Expect = 0.022
Identities = 29/83 (34%), Positives = 38/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 67 PGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARAAK--FEGASVTVS 240
PG GR L + + EA L A +A LD+A+ARA F V V+
Sbjct: 288 PGSGRPPTLARAIRTALAEAALDAADVDVVFADAAGVPALDEAEARALAEVFGPRGVPVT 347
Query: 241 AHASTEGKLYGSVGARDIAEAFTAV 315
A S G+LY A D+A A A+
Sbjct: 348 APKSMTGRLYAGGAALDVATALLAM 372
>gi|532246|gb|AAA65207.1| (L35560) daunorubicin-doxorubicin
polyketide synthase [Streptomyces peucetius]
Length = 425
Score = 36.7 bits (83), Expect = 0.11
Identities = 27/95 (28%), Positives = 40/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 31 NLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELD--QAQAR 204
++ G PG GR L + V +A L + A ELD +A+A
Sbjct: 274 SIAGYGASFDPPPGSGRPSALARAVETALADAGLDGSDIAVVFADGAAVPELDAAEAEAL 333
Query: 205 AAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV 315
A+ F V V+ + G+LY G D+A A A+
Sbjct: 334 ASVFGPRRVPVTVPKTLTGRLYSGAGPLDVATALLAL 370
>gi|1093564|prf||2104259F doxorubicin polyketide synthase
[Streptomyces peucetius]
Length = 425
Score = 36.7 bits (83), Expect = 0.11
Identities = 27/95 (28%), Positives = 40/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 31 NLGALGDKVTVKPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELD--QAQAR 204
++ G PG GR L + V +A L + A ELD +A+A
Sbjct: 274 SIAGYGASFDPPPGSGRPSALARAVETALADAGLDGSDIAVVFADGAAVPELDAAEAEAL 333
Query: 205 AAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAV 315
A+ F V V+ + G+LY G D+A A A+
Sbjct: 334 ASVFGPRRVPVTVPKTLTGRLYSGAGPLDVATALLAL 370
>gi|4416223|gb|AAD20268.1| (AF098965) chain length factor
[Streptomyces arenae]
Length = 429
Score = 36.4 bits (82), Expect = 0.15
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 64 KPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARAAK--FEGASVTV 237
+PG GR L + + +A LA +A ELD+A+A A F +V V
Sbjct: 288 RPGSGRPPGLRRAAELALADAGLAPGDIDVVFADAAGVPELDRAEAAAISGLFGPNAVPV 347
Query: 238 SAHASTEGKLYGSVGARDIAEAFTAV 315
+A S G++Y G D+ A AV
Sbjct: 348 TAPKSVTGRMYAGGGPADLVAALLAV 373
>gi|585894|sp|P27151|RL9_THETH 50S RIBOSOMAL PROTEIN L9
Length = 35
Score = 36.4 bits (82), Expect = 0.15
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKG 102
++ILL+ + NLG +G V VK G RN+LLP G
Sbjct: 2 KVILLEPLENLGDVGQVVCVKRGTARNYLLPXG 34
>gi|516110|gb|AAA87619.1| (L34880) polyketide synthase [Streptomyces
sp.]
Length = 398
Score = 35.2 bits (79), Expect = 0.33
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Frame = +1
Query: 67 PGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELD--QAQARAAKFEGASVTVS 240
PG GR L + V +A L + A ELD +A+A A+ F V V+
Sbjct: 259 PGSGRPSALARAVETALADAGLDRSDIAVVFADGAAVGELDVAEAEALASVFGPHRVPVT 318
Query: 241 AHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGPFRLIGEYDVLLHLHADVEST 420
+ G+LY G D+ A GL + EV+ G H+H D +
Sbjct: 319 VPKTLTGRLYSGAGPLDV-----ATGLLALRDEVVPATG------------HVHPDPDLP 361
Query: 421 VKVI 432
+ V+
Sbjct: 362 LDVV 365
>gi|478157|pir||E48401 ribosomal protein L9 - Thermus aquaticus
(fragment) >gi|252498|gb|AAB22729.1| ribosomal protein
L9 {N-terminal} [Thermus thermophilus, Peptide Partial,
35 aa] >gi|944956|gb|AAB33373.1| large ribsomal subunit
protein, TL8=15.5 kda ribsomal protein L9 ho>
Length = 35
Score = 35.2 bits (79), Expect = 0.33
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 4 ELILLQKVANLGALGDKVTVKPGYGRNFLLPKG 102
++IL + + NLG +G V VK G RN+LLP G
Sbjct: 2 KVILXEPLENLGXVGQVVCVKRGTARNYLLPXG 34
>gi|2580443|dbj|BAA23145.1| (D87924) ORF 2 [Actinomadura hibisca]
Length = 407
Score = 34.8 bits (78), Expect = 0.43
Identities = 28/83 (33%), Positives = 37/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 67 PGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARA--AKFEGASVTVS 240
PG GR L + V +A L +A +LD+A+A A A F V V+
Sbjct: 267 PGSGRPPTLERAVRAALDDARLTPADVDVVFADAAGVPDLDRAEADAIGAVFGPRGVPVT 326
Query: 241 AHASTEGKLYGSVGARDIAEAFTAV 315
A S G+LY A D A A A+
Sbjct: 327 APKSLTGRLYAGGPALDAATALLAM 351
>gi|406082|gb|AAA67434.1| (L24518) ardIorf2 gene product
[Kibdelosporangium aridum]
Length = 410
Score = 34.0 bits (76), Expect = 0.73
Identities = 24/84 (28%), Positives = 37/84 (43%), Gaps = 2/84 (2%)
Frame = +1
Query: 64 KPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARAAK--FEGASVTV 237
+P GR L K + + A + +A A ELD+ +A+A F V V
Sbjct: 269 RPASGREPTLRKAIEIALDNAGMLPEDIDVVFADAAAIPELDEVEAKAISEVFGPRGVPV 328
Query: 238 SAHASTEGKLYGSVGARDIAEAFTAV 315
+A + G+L A D+A A A+
Sbjct: 329 TAPKTMTGRLASGAAALDVATALLAI 354
>gi|729874|sp|P16539|KAS2_STRGA TETRACENOMYCIN C POLYKETIDE PUTATIVE
BETA-KETOACYL SYNTHASE 2 >gi|282572|pir||S27694 tcmL
protein - Streptomyces glaucescens
>gi|153497|gb|AAA67516.1| (M80674) tcmL gene product
[Streptomyces glaucescens]
Length = 409
Score = 33.6 bits (75), Expect = 0.96
Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 64 KPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARAAK--FEGASVTV 237
+PG GR + + + EA +A +A LD+A+A A F +V V
Sbjct: 269 RPGTGRPTGPARAIRLALEEARVAPEDVDVVYADAAGVPALDRAEAEALAEVFGPGAVPV 328
Query: 238 SAHASTEGKLYGSVGARDIAEAFTAV 315
+A + G+LY A D+A A ++
Sbjct: 329 TAPKTMTGRLYAGGAALDVATALLSI 354
>gi|4469321|emb|CAB38455.1| (X15312) put. ORF2 (AA 1-405)
beta-ketoacyl synthase homologue 2 [Streptomyces
glaucescens]
Length = 409
Score = 33.6 bits (75), Expect = 0.96
Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 64 KPGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQARAAK--FEGASVTV 237
+PG GR + + + EA +A +A LD+A+A A F +V V
Sbjct: 269 RPGTGRPTGPARAIRLALEEARVAPEDVDVVYADAAGVPALDRAEAEALAEVFGPGAVPV 328
Query: 238 SAHASTEGKLYGSVGARDIAEAFTAV 315
+A + G+LY A D+A A ++
Sbjct: 329 TAPKTMTGRLYAGGAALDVATALLSI 354
>gi|37593|emb|CAA40338.1| (X57019) unnamed protein product [Homo
sapiens] >gi|238775|gb|AAB20305.1| (S65125) putative
tyrosine kinase receptor=UFO [human, NIH3T3, Peptide,
894 aa] [Homo sapiens]
Length = 894
Score = 32.1 bits (71), Expect = 2.8
Identities = 31/105 (29%), Positives = 41/105 (38%)
Frame = -3
Query: 373 QSGGTDPRQE*LLSFQAVSRRQ*TPQQCRARPPSHTIYLRWRHAQTPSHWRPQTWRHAPE 194
Q+G DP +E L S +V Q PP H I + +Q PS W W
Sbjct: 272 QAGEPDPPEEPLTSQASVPPHQLRLGSLHPHPPYH-IRVACTSSQGPSSW--THWLPVET 328
Query: 193 PDPVPTWLWLHTQHAWPGRQRDLLLWQVQQLPLGGESCGHNLV*Q 59
P+ VP + G Q + WQ + PL G G+ L Q
Sbjct: 329 PEGVPLGPPENISATRNGSQA-FVHWQEPRAPLQGTLLGYRLAYQ 372
>gi|267193|sp|P30530|UFO_HUMAN TYROSINE-PROTEIN KINASE RECEPTOR UFO
PRECURSOR (AXL ONCOGENE)
Length = 887
Score = 32.1 bits (71), Expect = 2.8
Identities = 31/105 (29%), Positives = 41/105 (38%)
Frame = -3
Query: 373 QSGGTDPRQE*LLSFQAVSRRQ*TPQQCRARPPSHTIYLRWRHAQTPSHWRPQTWRHAPE 194
Q+G DP +E L S +V Q PP H I + +Q PS W W
Sbjct: 265 QAGEPDPPEEPLTSQASVPPHQLRLGSLHPHPPYH-IRVACTSSQGPSSW--THWLPVET 321
Query: 193 PDPVPTWLWLHTQHAWPGRQRDLLLWQVQQLPLGGESCGHNLV*Q 59
P+ VP + G Q + WQ + PL G G+ L Q
Sbjct: 322 PEGVPLGPPENISATRNGSQA-FVHWQEPRAPLQGTLLGYRLAYQ 365
>gi|6981696|ref|NP_037202.1|| utrophin (homologous to dystrophin)
>gi|2960013|emb|CAA05775.1| (AJ002967) unnamed protein
product [Rattus norvegicus]
Length = 3419
Score = 31.3 bits (69), Expect = 4.9
Identities = 25/96 (26%), Positives = 48/96 (49%), Gaps = 4/96 (4%)
Frame = +1
Query: 145 AKRAEYEAKAKSELDQAQARAAKF-EGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGL 321
+K+ E + SEL A + E A V V+A S+ +L A ++ + F V
Sbjct: 1684 SKQEEIVKRLLSELSDASIQVENVREQAIVLVNARGSSSRELVEPKLA-ELGKNFEKVSQ 1742
Query: 322 PLEKKEVILGEGP---FRLIGEYDVLLHLHADVESTVKVI 432
+ ++++G+ P +G + L L +D+E+ +KV+
Sbjct: 1743 HINSAQMLIGQDPAGTVEAVGPFSDLESLESDIENMLKVV 1782
>gi|3242253|emb|CAB06099.1| (Z83857) ppsC [Mycobacterium
tuberculosis]
Length = 2188
Score = 31.3 bits (69), Expect = 4.9
Identities = 16/23 (69%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 220 PQTWRHAPEPDPV-PTWLWLHTQH 152
PQT H PEP PV PT W HTQH
Sbjct: 891 PQT-PHPPEPHPVLPTTPWQHTQH 913
>gi|125240|sp|P16541|KAS2_STRVN GRANATICIN POLYKETIDE PUTATIVE
BETA-KETOACYL SYNTHASE 2 (ORF2) >gi|80859|pir||S05394
granaticin-producing polyketide synthase chain 2 -
Streptomyces violaceoruber >gi|4218565|emb|CAA09654.1|
(AJ011500) polyketide synthase chain length factor
[Streptomy>
Length = 415
Score = 30.9 bits (68), Expect = 6.4
Identities = 29/102 (28%), Positives = 42/102 (40%), Gaps = 2/102 (1%)
Frame = +1
Query: 67 PGYGRNFLLPKGVAVPATEANLAAFQAKRAEYEAKAKSELDQAQAR--AAKFEGASVTVS 240
PG GR L + + EA L + ELD+A+A A F V V+
Sbjct: 269 PGSGRPPALGRAAELALAEAGLTPADISVVFADGAGVPELDRAEADTLARLFGPRGVPVT 328
Query: 241 AHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGPFRLI 372
A + G+L G D+A A A+ + +VI G R +
Sbjct: 329 APKALTGRLCAGGGPADLAAALLAL-----RDQVIPATGRHRAV 367
>gi|94394|pir||PN0096 hypothetical 19K protein - potato virus M
(strain Russian)
Length = 179
Score = 30.5 bits (67), Expect = 8.3
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 205 AAKFEGASVTVSAHASTEGKLYGSVGARDIAEAFTAVGLPLEKKEVILGEGPFR 366
A FE A + AS +G LYG VG+ I A +GLP+ + P R
Sbjct: 9 AILFEIAIGLIRLRASMDGLLYGFVGSGRIFSASCNLGLPVSNPGFVTRIAPLR 62
>gi|903608|gb|AAB03520.1| (U28498) flagellin [Borrelia hispanica]
Length = 334
Score = 30.5 bits (67), Expect = 8.3
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 124 ANLAAFQAKRAEYEAKAKSELDQAQARAAKFEGASVTVSAHASTEGKLYGSVGARDIAEA 303
ANL AFQ +R +A + ++ +A A+ A++T AST + IA+A
Sbjct: 264 ANLGAFQNRRESIKASTEYAIENLEASYAQIRDAAMTDDIVASTTNSILTQSAMAMIAQA 323
Database: nr
Posted date: Mar 11, 2000 11:53 PM
Number of letters in database: 142,317,894
Number of sequences in database: 461,791
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126484227
Number of Sequences: 461791
Number of extensions: 2867719
Number of successful extensions: 9734
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9669
Number of HSP's gapped (non-prelim): 62
length of query: 150
length of database: 142,317,894
effective HSP length: 52
effective length of query: 97
effective length of database: 118,304,762
effective search space: 11475561914
effective search space used: 11475561914
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)