BLASTX 2.0.10 [Aug-26-1999]
Query= XF-02A11-GL36
(1017 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|466185|sp|P35154|YPUG_BACSU HYPOTHETICAL 29.6 KD PROTEIN IN ... 146 3e-34
gi|3322994 (AE001243) conserved hypothetical protein [Treponema... 106 2e-22
gi|4981004|gb|AAD35578.1|AE001726_12 (AE001726) conserved hypot... 103 2e-21
gi|5738486|emb|CAB52834.1| (AL109848) hypothetical protein [Str... 89 6e-17
gi|2145861|pir||S72957 hypothetical protein - Mycobacterium lep... 68 1e-10
gi|2326752|emb|CAB10966| (Z98268) hypothetical protein Rv1709 [... 68 1e-10
gi|2496330|sp|P75478|Y213_MYCPN HYPOTHETICAL PROTEIN MG213 HOMO... 63 4e-09
gi|5457790|emb|CAB49280.1| (AJ248284) hypothetical protein [Pyr... 55 9e-07
gi|3258233|dbj|BAA30916.1| (AP000007) 213aa long hypothetical p... 55 1e-06
gi|2128686|pir||E64441 hypothetical protein MJ1134 - Methanococ... 45 0.001
gi|399464|sp|Q02728|EXOF_RHIME EXOPOLYSACCHARIDE PRODUCTION PRO... 38 0.14
gi|6458252|gb|AAF10138.1|AE001913_12 (AE001913) hypothetical pr... 35 0.90
gi|124142|sp|P28925|ICP4_HSVEB TRANS-ACTING TRANSCRIPTIONAL PRO... 35 1.2
gi|124143|sp|P17473|ICP4_HSVEK TRANS-ACTING TRANSCRIPTIONAL PRO... 35 1.2
gi|1945078|dbj|BAA19690.1| (D85923) myosin [Mus musculus] 35 1.2
gi|1945080|dbj|BAA19691.1| (D85924) myosin [Mus musculus] 35 1.2
gi|998563|bbs|166455 B-type nuclear lamin [Lytechinus variegatu... 35 1.2
gi|97774|pir||S21323 probable endoglucanase - Ruminococcus flav... 33 3.5
gi|4240221|dbj|BAA74889.1| (AB020673) KIAA0866 protein [Homo sa... 33 4.6
gi|4417214|dbj|BAA36971| (D10667) smooth muscle myosin heavy ch... 33 4.6
gi|6166600|sp|P35749|MYST_HUMAN MYOSIN HEAVY CHAIN, SMOOTH MUSC... 33 4.6
gi|1346644|sp|P35748|MYST_RABIT MYOSIN HEAVY CHAIN, SMOOTH MUSC... 32 6.0
gi|109322|pir||A41604 myosin heavy chain, smooth muscle, long s... 32 6.0
gi|1695235 (U41543) F46H5.6 gene product [Caenorhabditis elegans] 32 7.8
gi|3877448|emb|CAB03116.1| (Z81086) predicted using Genefinder;... 32 7.8
>gi|466185|sp|P35154|YPUG_BACSU HYPOTHETICAL 29.6 KD PROTEIN IN
RIBT-DACB INTERGENIC REGION (ORFX7)
>gi|629132|pir||S45549 hypothetical protein X7 -
Bacillus subtilis >gi|410131 (L09228) ORFX7 [Bacillus
subtilis] >gi|2634757|emb|CAB14254| (Z99116) similar to
hypothetical proteins [Bacillus subtilis]
Length = 251
Score = 146 bits (365), Expect = 3e-34
Identities = 101/233 (43%), Positives = 144/233 (61%), Gaps = 13/233 (5%)
Frame = +1
Query: 250 EVILDAFEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVMQELRFELAAEYLVMAA 429
+V +D FEGPLDLLL+LI R ++I DIPVA+IT QY+ Y++ M+ L ++A+EYLVMAA
Sbjct: 5 QVKIDTFEGPLDLLLHLINRLEIDIYDIPVAKITEQYLLYVHTMRVLELDIASEYLVMAA 64
Query: 430 ILAEIKSRMLLPRPPN--IENE--EGEDPRAELVRRLQEYERFKQAAEDL-----DALPR 582
L IKSRMLLP+ E+E E EDPR EL+ +L EY ++K AA+DL +
Sbjct: 65 TLLSIKSRMLLPKQEEELFEDELLEEEDPREELIEKLIEYRKYKDAAKDLKEREEERQKS 124
Query: 583 LDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELF--SGHAIRREALSVRQR 756
+ S + + V + +++ A Q VLKR ++ I R+ + + R
Sbjct: 125 FTKPPSDLSEYAKEVKQSEQKLSVTVYDMIGAFQKVLKRKKINRPMETTITRQDIPIEAR 184
Query: 757 MGDILAHLED-GKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQLLDIVQEASLGPIYIK 933
M +I+ L+ G F LF E+ K ++VTFLA+LEL K QL+ I QE + IYI
Sbjct: 185 MNEIVHSLKSRGTRINFMDLFPYEQ-KEHLVVTFLAVLELMKNQLVLIEQEHNFSDIYIT 243
Query: 934 -SLAIH 948
S +IH
Sbjct: 244 GSESIH 249
>gi|3322994 (AE001243) conserved hypothetical protein [Treponema
pallidum]
Length = 252
Score = 106 bits (263), Expect = 2e-22
Identities = 75/230 (32%), Positives = 118/230 (50%), Gaps = 4/230 (1%)
Frame = +1
Query: 235 PPDALEVILDAFEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVMQELRFELAAEY 414
P E L FEGPLDLLL+LI++ L+I DIP+ EIT QY+ Y++ E+
Sbjct: 7 PVPVQEFKLSQFEGPLDLLLFLIKKNELSIYDIPICEITAQYLQYVDQTVSPDLRGLTEF 66
Query: 415 LVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAEDLDALPRLD-- 588
MAA+L IKS MLLP +++ E+ EDPR LV L EY+++KQ + ++ D
Sbjct: 67 YAMAAVLLYIKSCMLLPMELDLDGEDIEDPRQSLVEHLIEYQKYKQLCKLMELYECEDMW 126
Query: 589 --RDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREALSVRQRMG 762
H F++ + V ++LL+ ++++ + E +SV +++
Sbjct: 127 CVERKKTQHLFLSPAEVPLLHGDV--RDLLMLFIRLVRKTPQWIMDLY--EEVSVNEKL- 181
Query: 763 DILAHLEDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQLLDIVQEASLGPI 924
+L+ L + T + + V+ F+AILE AK L+ I Q GPI
Sbjct: 182 TLLSELLGVRGRCVFTELIKQPSRADVVCAFVAILEAAKTHLVHISQPEFFGPI 235
>gi|4981004|gb|AAD35578.1|AE001726_12 (AE001726) conserved
hypothetical protein [Thermotoga maritima]
Length = 229
Score = 103 bits (255), Expect = 2e-21
Identities = 67/207 (32%), Positives = 117/207 (56%), Gaps = 2/207 (0%)
Frame = +1
Query: 259 LDAFEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVMQELRFELAAEYLVMAAILA 438
L FEGPLDLLLYL+R++ ++I +IP++++ ++V+Y+ M++L ++ +++L MA+ L
Sbjct: 7 LPVFEGPLDLLLYLVRKKKVDIREIPISQLADEFVEYLEHMKKLDMKITSDFLEMASTLM 66
Query: 439 EIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAEDLDALPRLDRDNSAAHAFV 618
E+KS+ML+PR E E + + EL RR++EY + K E + L + + V
Sbjct: 67 ELKSKMLIPRVREEEKESIDRKKEELYRRIEEYSKVK---EIVSILKKEENLLKRKRVRV 123
Query: 619 ADQTTVRIPPPVNMKELLLAL--QDVLKRAELFSGHAIRREALSVRQRMGDILAHLEDGK 792
+ +I +E+L + ++ ++ A H ++ E LSV + M IL + DG+
Sbjct: 124 RNVFFEKIEGIEKFREILKRIWKEEAMREAV----HRVKSETLSVEEMMERILDEI-DGE 178
Query: 793 FHPFTTLFTAEEGKLGVLVTFLAILELAK 879
L + E ++V LAILEL K
Sbjct: 179 IE-ILRLLSRAENVYELIVRLLAILELVK 206
>gi|5738486|emb|CAB52834.1| (AL109848) hypothetical protein
[Streptomyces coelicolor A3(2)]
Length = 264
Score = 88.9 bits (217), Expect = 6e-17
Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 11/243 (4%)
Frame = +1
Query: 268 FEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVM-QELRFELAAEYLVMAAILAEI 444
FEGP DLLL LI + L++ ++ ++++T +++ +I M + + E+LV+AA L ++
Sbjct: 6 FEGPFDLLLQLISKHKLDVTEVALSKVTDEFMAHIRAMGPDWDLDQTTEFLVVAATLLDL 65
Query: 445 KSRMLLPRPPNIENEEGE---DPRAELVRRLQEYERFKQAAEDL-DALPRLDRDNSAA-- 606
K+ LLP +E+E + R L RL +Y +KQ AE D L R +
Sbjct: 66 KAARLLPAA-EVEDEADLALLEARDLLFARLLQYRAYKQIAEIFNDRLEAEARRHPRTVG 124
Query: 607 ----HAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREALSVRQRMGDILA 774
HA + + + I P K + A+Q R +++ H I +SV+++ G ++A
Sbjct: 125 LEPHHAELLPEVVISIGPEGFAKLAVKAMQPK-PRPQVYVEH-IHAPLVSVQEQAGIVVA 182
Query: 775 HLEDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQLLDIVQEASLGPIYIKSLAIHHT 954
L++ F L E L V+ FLA+LEL +E+ +++ QE +LG + ++
Sbjct: 183 RLKELGEASFRVLVQDTEDTLTVVARFLALLELYREKAVELDQETALGDLLVRWTGGDGE 242
Query: 955 NGPLQLSSDFDNSP 996
P ++ +FD P
Sbjct: 243 AQP-SVTDEFDRPP 255
>gi|2145861|pir||S72957 hypothetical protein - Mycobacterium leprae
>gi|467146 (U00021) No definition line found
[Mycobacterium leprae] >gi|2065216|emb|CAB08281|
(Z95117) hypothetical protein MLC1351.05c [Mycobacterium
leprae]
Length = 268
Score = 68.3 bits (164), Expect = 1e-10
Identities = 64/230 (27%), Positives = 114/230 (48%), Gaps = 13/230 (5%)
Frame = +1
Query: 241 DALEVILDAFEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVM-QELRFELAAEYL 417
+ +V L FEGP DLLL+LI L++ ++ + ++T ++ YI + +L E +L
Sbjct: 9 NGFQVRLTNFEGPFDLLLHLICAHRLDVTEVALHQVTDDFIAYIRRLGPQLGLEETTAFL 68
Query: 418 VMAAILAEIKSRMLLPRPPNIENEEG---EDPRAELVRRLQEYERFKQAAEDLDALPRLD 588
V+AA L ++K+ LLP +E+EE + R L RL +Y FK+ A+ L
Sbjct: 69 VIAATLIDLKAARLLP-AGRVEDEEDLALLEGRDLLFARLLQYRAFKRVAQIFAEL-EAT 126
Query: 589 RDNSAAHAFVADQTTVRIPPPV------NMKELLLALQDVLKRAELFSGHAIRREALSVR 750
S HA ++ + P V + + A + + + + +SV
Sbjct: 127 ALRSYPHAVFLEERFASLLPEVMIGVDADRFAEIAAFTFTPRPVPIVATGHLHELKISVP 186
Query: 751 QRMGDILAHLE---DGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQLLDIVQEASLGP 921
++ +LA LE +G++ F+ L + V+ FLA+LEL + + + Q LG
Sbjct: 187 EQAKRLLAMLEARGNGQWTSFSELVADCREPIEVVGCFLALLELYRTRAIAFEQAEPLGV 246
Query: 922 IYI 930
+ +
Sbjct: 247 LQV 249
>gi|2326752|emb|CAB10966| (Z98268) hypothetical protein Rv1709
[Mycobacterium tuberculosis]
Length = 278
Score = 67.9 bits (163), Expect = 1e-10
Identities = 63/226 (27%), Positives = 108/226 (46%), Gaps = 12/226 (5%)
Frame = +1
Query: 253 VILDAFEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVM-QELRFELAAEYLVMAA 429
V L FEGP DLLL LI L++ ++ + ++T ++ Y + L E +LV+AA
Sbjct: 25 VRLTNFEGPFDLLLQLIFAHQLDVTEVALHQVTDDFIAYTKAIGARLELEETTAFLVIAA 84
Query: 430 ILAEIKSRMLLPRPPNIENEEG---EDPRAELVRRLQEYERFKQAAE-----DLDALPRL 585
L ++K+ LLP +++EE + R L RL +Y FK AE + AL
Sbjct: 85 TLLDLKAARLLP-AGQVDDEEDLALLEVRDLLFARLLQYRAFKHVAEMFAELEATALRSY 143
Query: 586 DRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREALSVRQRMGD 765
R S FV V + + + A+ + A + + +SV ++
Sbjct: 144 PRAVSLEDGFVGLLPEVMLGVDAHRFAEIAAIALTPRPAPTVATEHLHELMVSVPEQAEH 203
Query: 766 ILAHLE---DGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQLLDIVQEASLGPIYI 930
+LA L+ G++ F+ L + ++ FLA+LEL + + + Q LG + +
Sbjct: 204 LLAMLKARGSGQWASFSELVADCTAPIEIVGRFLALLELYRTRAVAFEQSEPLGALQV 261
>gi|2496330|sp|P75478|Y213_MYCPN HYPOTHETICAL PROTEIN MG213 HOMOLOG
>gi|2146100|pir||S73862 dihyrofolate reductase homolog
H10_orf506 - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1674232 (AE000052) Mycoplasma pneumoniae,
dihyrofolate reductase (dyr) homolog protein; similar to
Swiss-Prot Accession Number P00380, from E. faecium
[Mycoplasma pneumoniae]
Length = 506
Score = 62.8 bits (150), Expect = 4e-09
Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 24/229 (10%)
Frame = +1
Query: 244 ALEVILDAFEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINV-MQELRFELAAEYLV 420
+ V L+ + G L LL L+ + N+ + +A+IT QY+ IN + + E +YLV
Sbjct: 160 SFNVFLEDYNGTLPNLLELLIDKKFNLHQVDIAKITTQYLHLINTNLNKQAIEPITDYLV 219
Query: 421 MAAILAEIKSRMLLPRPPNIENEEGEDP--RAELVRRLQEYERFKQAAEDLDALPRLDR- 591
+ + + E K+ LL + + D R +LV +L EY+R++++ +D + L R++R
Sbjct: 220 ITSRIVEQKANNLLQINDIALDSDFLDNKLRDKLVAQLVEYKRYRESLDDFEKL-RINRL 278
Query: 592 -----DNSAAHAF-VADQTTVR-------IPPPVNMKELLLALQDVLKR--AELFSGHAI 726
DN D++ +P V++ +L A+ +++R A+ + I
Sbjct: 279 AYFSKDNDFNRFIQTVDKSNTEPVKIEDELPNYVSVLKLHHAMNKLMQRWRAQFLANKNI 338
Query: 727 RREALSVRQRMGDILAHLEDGKFHPFTT----LFTAEEGKLGVLVT-FLAILELAKEQLL 891
+ LS+ Q +ILA ++ +H + L L +T F+A+L L Q++
Sbjct: 339 SIQELSIEQVQAEILATIKQFGYHSVSLKRVLLKVNHHISLMYFITAFVALLVLINNQII 398
Query: 892 DIVQEASLGPIYI 930
DI Q + +YI
Sbjct: 399 DIEQTSFDDELYI 411
>gi|5457790|emb|CAB49280.1| (AJ248284) hypothetical protein
[Pyrococcus abyssi]
Length = 218
Score = 55.0 bits (130), Expect = 9e-07
Identities = 46/151 (30%), Positives = 73/151 (47%), Gaps = 16/151 (10%)
Frame = +1
Query: 277 PLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVMQELRFELAAEYLVMAAILAEIKSRM 456
P+D+LL L++ ++ +I + ++T +Y+ + MQEL ++A ++ A+IL +KS
Sbjct: 10 PVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMKSEA 69
Query: 457 LLPRPPNIENEEGE-------DPRAELVRRLQEYERFKQAAEDL-DALPRLDRDNS---- 600
LL EE E DP +RR++ Y E L DAL +R
Sbjct: 70 LLREDEERNEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEALMDALEEAERRKPRKKK 129
Query: 601 ----AAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIR 729
FV D V I VN L +++K +G IR
Sbjct: 130 KVEIEEEIFVVDDFRVDIEKHVN------RLYEIVKEIYNETGKPIR 170
>gi|3258233|dbj|BAA30916.1| (AP000007) 213aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 213
Score = 54.7 bits (129), Expect = 1e-06
Identities = 35/105 (33%), Positives = 60/105 (56%), Gaps = 9/105 (8%)
Frame = +1
Query: 277 PLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVMQELRFELAAEYLVMAAILAEIKSRM 456
P+D+LL L++ ++ +I + ++T +Y+ + MQEL ++A ++ A+IL +KS
Sbjct: 8 PVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMKSEA 67
Query: 457 LLPRPPNIENEEGE--------DPRAELVRRLQEYERFKQAAEDL-DALPRLDR 591
LL R EN+ GE DP +RR++ Y E L DAL ++
Sbjct: 68 LL-RGEEEENKRGEEEKIKVDVDPLVPPLRRVERYYTLDDLIEALMDALEEAEK 120
>gi|2128686|pir||E64441 hypothetical protein MJ1134 - Methanococcus
jannaschii >gi|1591768 (U67556) conserved hypothetical
protein [Methanococcus jannaschii]
Length = 226
Score = 44.5 bits (103), Expect = 0.001
Identities = 48/211 (22%), Positives = 92/211 (42%), Gaps = 12/211 (5%)
Frame = +1
Query: 301 IRRQNLNILDIPVAEITRQYVDYINVMQELRFELAAEYLVMAAILAEIKSRMLLPRPPNI 480
I ++NLN D+ +AEI Y+ I +++ L+A+ +++A IL +KS L +
Sbjct: 19 IEKKNLNPWDVNIAEIADYYIQKIKELKKFDIRLSADVILVAGILLRMKSEALYDE-CKV 77
Query: 481 ENEEGEDPRAELVRRLQEYERFKQAAEDLDALPRLDRDNSAAHAFVADQTTVRIPPPVNM 660
E EE D +Y+ ++ + + D+D + + PV +
Sbjct: 78 EEEEDYD----YCDDYYDYDDIEEKPKKGKKKEKEDKDKNK-----------KSKKPVTV 122
Query: 661 KELLLALQDVLKRAELFSGHAIRR--------EALSVRQRMGDILAHLEDGKFHP----F 804
EL+ ++ L + + + ++ E L + DI+A L D +
Sbjct: 123 DELIKTIEKELNKVKKSRKNREKKTNEVEEIIEELIEEDDISDIIAELLDDLMKEGIIVY 182
Query: 805 TTLFTAEEGKLGVLVTFLAILELAKEQLLDIVQEASLGPIYIK 933
F E ++ F+ L LA + +++QE G + IK
Sbjct: 183 QEKFKTREDRVRY---FIPSLYLANDGKAELIQEKLFGELIIK 222
>gi|399464|sp|Q02728|EXOF_RHIME EXOPOLYSACCHARIDE PRODUCTION PROTEIN
EXOF PRECURSOR >gi|152191 (L05588) mutation causes a
succinoglucan-minus phenotype; second geneof the exoYFQ
operon; putative [Rhizobium meliloti]
Length = 421
Score = 37.9 bits (86), Expect = 0.14
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Frame = +1
Query: 364 DYINVMQELRFELAAEYLVM---AAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQE 534
DYIN E ++A ++ A +LAEI R +P P ++N + + L E
Sbjct: 171 DYINASGESAVQVAERSRLLIRRARLLAEIGKRDTIPMPEELKNVPDAEKLLDSETALME 230
Query: 535 YERFKQAAEDLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELF- 711
R K+ LDAL L + +A + + ++L LA +D K L
Sbjct: 231 -SRDKRQKRQLDALADLRSLLQSEIEALAKKAETQ------ARQLELATEDRDKVDSLAE 283
Query: 712 SGHAIRREALSVRQRMGDILAHLED 786
G A+ + LS+ QR+ D+ A L D
Sbjct: 284 KGLALSQRKLSLEQRVADVQASLLD 308
>gi|6458252|gb|AAF10138.1|AE001913_12 (AE001913) hypothetical
protein [Deinococcus radiodurans]
Length = 277
Score = 35.2 bits (79), Expect = 0.90
Identities = 55/226 (24%), Positives = 102/226 (44%), Gaps = 31/226 (13%)
Frame = +1
Query: 253 VILDAFEGPLDLLLYLIRRQNLNILDIPVAEITRQYVDYINVMQELRF------------ 396
V L FEG L L +R + L ++P+ ++TR+ + + + L
Sbjct: 18 VQLPVFEGTLGELAAALRSERLLPGEVPLLQLTREVLAWAEGVTGLGVTGLGVTGQSPAA 77
Query: 397 --ELAAEYLVMAAILAEIKSRMLLPR--PPNIENEEGEDPRAELVRRLQEYERFKQAAED 564
+ + L A + +K+R+LLPR P ++ ++ G D + F + E
Sbjct: 78 FADAHPDLLPTLAGVIALKARLLLPRPEPEDVADDWGAD------------DGFDEVLEG 125
Query: 565 LDALPRLD--------RDNSAAHAFVADQTTVRIP-------PPVNMKELLLALQDVLKR 699
++AL L R + A V +P P ++ +L+ A Q+ +++
Sbjct: 126 VEALAELGSLVAFLAARRQAREGLLPARPAPVTLPRRERPRNPQGSLAKLVRAAQNAVRQ 185
Query: 700 AELFSGHAIRREALSVRQRMGDILAHLEDGKFHPFTTLFTAEEGKLGVLVTFLAILELAK 879
E+ + RE LS+ + + A + F T+ + G+ F A+LE K
Sbjct: 186 VEV---PLLARERLSLADALTALRAFGSRLRVFDFWTVHADDWGER--TTYFAALLEGVK 240
Query: 880 EQLLDIVQEASLGPIYI 930
E + Q G I +
Sbjct: 241 EGSFQVEQPEMYGDIRV 257
>gi|124142|sp|P28925|ICP4_HSVEB TRANS-ACTING TRANSCRIPTIONAL PROTEIN
ICP4 (155 KD IMMEDIATE-EARLY PROTEIN)
>gi|73647|pir||EDBEF6 155K transcriptional activator -
equine herpesvirus 1 (strain Ab4p) >gi|330855 (M86664)
transcriptional activator [Equine herpesvirus 1]
>gi|330871 (M86664) transcriptional activator [Equine
herpesvirus 1]
Length = 1487
Score = 34.8 bits (78), Expect = 1.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 606 TCLCCRPDHSTDSSSGQHERTAAGTTRRPQACRT---VQRPRYPTRSTERTPTHGRYTGP 776
T CCR + S GQ + R PQA + + + P S++ HGR G
Sbjct: 869 TATCCRATQTNARSRGQQHQPQKA--RSPQAAASPAHLSQEAMPGSSSDDRAIHGRPRGK 926
Query: 777 SGRRQVSPI 803
SG+R+ P+
Sbjct: 927 SGKRRSEPL 935
>gi|124143|sp|P17473|ICP4_HSVEK TRANS-ACTING TRANSCRIPTIONAL PROTEIN
ICP4 (155 KD IMMEDIATE-EARLY PROTEIN)
>gi|73646|pir||EDBEE1 immediate-early protein - equine
herpesvirus 1 >gi|330911 (J04366) immediate-early protein
[Equine herpesvirus type 1]
Length = 1487
Score = 34.8 bits (78), Expect = 1.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 606 TCLCCRPDHSTDSSSGQHERTAAGTTRRPQACRT---VQRPRYPTRSTERTPTHGRYTGP 776
T CCR + S GQ + R PQA + + + P S++ HGR G
Sbjct: 869 TATCCRATQTNARSRGQQHQPQKA--RSPQAAASPAHLSQEAMPGSSSDDRAIHGRPRGK 926
Query: 777 SGRRQVSPI 803
SG+R+ P+
Sbjct: 927 SGKRRSEPL 935
>gi|1945078|dbj|BAA19690.1| (D85923) myosin [Mus musculus]
Length = 1972
Score = 34.8 bits (78), Expect = 1.2
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Frame = +1
Query: 382 QELRFELAAEYLVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAE 561
+E+R LAA+ + IL E+++R+ EE ED R +L + ER K A +
Sbjct: 907 EEMRVRLAAKKQELEEILHEMEARL----------EEEEDRRQQL-----QAERKKMAQQ 951
Query: 562 DLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREAL 741
LD +L+ + +A ++ T +++ +L + D + +E
Sbjct: 952 MLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDDILVMDD--------QNSKLSKERK 1002
Query: 742 SVRQRMGDILAHL--EDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQL 888
+ +R+ D+ +L E+ K T L + E + L L E ++++L
Sbjct: 1003 LLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQEL 1053
>gi|1945080|dbj|BAA19691.1| (D85924) myosin [Mus musculus]
Length = 1938
Score = 34.8 bits (78), Expect = 1.2
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Frame = +1
Query: 382 QELRFELAAEYLVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAE 561
+E+R LAA+ + IL E+++R+ EE ED R +L + ER K A +
Sbjct: 907 EEMRVRLAAKKQELEEILHEMEARL----------EEEEDRRQQL-----QAERKKMAQQ 951
Query: 562 DLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREAL 741
LD +L+ + +A ++ T +++ +L + D + +E
Sbjct: 952 MLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDDILVMDD--------QNSKLSKERK 1002
Query: 742 SVRQRMGDILAHL--EDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQL 888
+ +R+ D+ +L E+ K T L + E + L L E ++++L
Sbjct: 1003 LLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQEL 1053
>gi|998563|bbs|166455 B-type nuclear lamin [Lytechinus variegatus,
Peptide, 456 aa]
Length = 456
Score = 34.8 bits (78), Expect = 1.2
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = +1
Query: 301 IRRQNLNILDIPVAEITRQYVDYINVMQELRFELAAEYLVMAAILAEIKSRMLLPRPPNI 480
+R + L L VAE R Y D +N+ L E+A +L ++R+ + PP
Sbjct: 246 LRDKELQQLRDAVAEQLRDYDDLLNIKLSLDNEIAT----YRKLLEGEETRLRISTPPRK 301
Query: 481 ENEEGEDPRAELVRRLQEYERFKQAAEDLDALPRLDRD 594
DPR RR+++ Q+A + + ++ D
Sbjct: 302 TKAASRDPRPSKRRRVEDESSITQSATNSGVVAIVESD 339
>gi|97774|pir||S21323 probable endoglucanase - Ruminococcus
flavefaciens >gi|46153|emb|CAA39559| (X56082)
endo-glucanase [Ruminococcus flavefaciens]
Length = 680
Score = 33.2 bits (74), Expect = 3.5
Identities = 24/73 (32%), Positives = 30/73 (40%)
Frame = +3
Query: 657 HERTAAGTTRRPQACRTVQRPRYPTRSTERTPTHGRYTGPSGRRQVSPIYNTVHR*RRQA 836
H T G P CR V+ R R+ + H T GRR + VH+ RR+A
Sbjct: 447 HRATPRG---HPHRCRAVRGSRQDDRARDLRRRHVDATAGQGRRDRPQLRVLVHQLRREA 503
Query: 837 WGTGHLPSNTGTR 875
TG P G R
Sbjct: 504 --TGQRPDAMGAR 514
>gi|4240221|dbj|BAA74889.1| (AB020673) KIAA0866 protein [Homo sapiens]
Length = 1266
Score = 32.8 bits (73), Expect = 4.6
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 382 QELRFELAAEYLVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAE 561
+E+R LAA+ + IL E+++R+ EE ED +L + ER K A +
Sbjct: 907 EEMRVRLAAKKQELEEILHEMEARL----------EEEEDRGQQL-----QAERKKMAQQ 951
Query: 562 DLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREAL 741
LD +L+ + +A ++ T +++ +L + D + + +E
Sbjct: 952 MLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDEILVMDD--------QNNKLSKERK 1002
Query: 742 SVRQRMGDILAHL--EDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQL 888
+ +R+ D+ +L E+ K T L E + L L E ++++L
Sbjct: 1003 LLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1053
>gi|4417214|dbj|BAA36971| (D10667) smooth muscle myosin heavy chain
[Homo sapiens]
Length = 1052
Score = 32.8 bits (73), Expect = 4.6
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 382 QELRFELAAEYLVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAE 561
+E+R LAA+ + IL E+++R+ EE ED +L + ER K A +
Sbjct: 21 EEMRVRLAAKKQELEEILHEMEARL----------EEEEDRGQQL-----QAERKKMAQQ 65
Query: 562 DLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREAL 741
LD +L+ + +A ++ T +++ +L + D + + +E
Sbjct: 66 MLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDEILVMDD--------QNNKLSKERK 116
Query: 742 SVRQRMGDILAHL--EDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQL 888
+ +R+ D+ +L E+ K T L E + L L E ++++L
Sbjct: 117 LLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 167
>gi|6166600|sp|P35749|MYST_HUMAN MYOSIN HEAVY CHAIN, SMOOTH MUSCLE
ISOFORM (SMMHC) >gi|2104553 (AF001548) Myosin heavy chain
(MHY11) (5'partial) [Homo sapiens]
Length = 1857
Score = 32.8 bits (73), Expect = 4.6
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 382 QELRFELAAEYLVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAE 561
+E+R LAA+ + IL E+++R+ EE ED +L + ER K A +
Sbjct: 792 EEMRVRLAAKKQELEEILHEMEARL----------EEEEDRGQQL-----QAERKKMAQQ 836
Query: 562 DLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREAL 741
LD +L+ + +A ++ T +++ +L + D + + +E
Sbjct: 837 MLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDEILVMDD--------QNNKLSKERK 887
Query: 742 SVRQRMGDILAHL--EDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQL 888
+ +R+ D+ +L E+ K T L E + L L E ++++L
Sbjct: 888 LLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 938
>gi|1346644|sp|P35748|MYST_RABIT MYOSIN HEAVY CHAIN, SMOOTH MUSCLE
ISOFORM (SMMHC) >gi|165490 (M77812) myosin heavy chain
[Oryctolagus cuniculus]
Length = 1972
Score = 32.5 bits (72), Expect = 6.0
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 382 QELRFELAAEYLVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAE 561
+E+R LAA+ + IL E+++R+ EE ED +L + ER K A +
Sbjct: 907 EEMRVRLAAKKQELEEILHEMEARL----------EEEEDRGQQL-----QAERKKMAQQ 951
Query: 562 DLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREAL 741
LD +L+ + +A ++ T +++ +L + D + + +E
Sbjct: 952 MLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDDILVMDD--------QNNKLSKERK 1002
Query: 742 SVRQRMGDILAHL--EDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQL 888
+ +R+ D+ +L E+ K T L E + L L E ++++L
Sbjct: 1003 LLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1053
>gi|109322|pir||A41604 myosin heavy chain, smooth muscle, long splic
form - rabbit
Length = 1972
Score = 32.5 bits (72), Expect = 6.0
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 382 QELRFELAAEYLVMAAILAEIKSRMLLPRPPNIENEEGEDPRAELVRRLQEYERFKQAAE 561
+E+R LAA+ + IL E+++R+ EE ED +L + ER K A +
Sbjct: 907 EEMRVRLAAKKQELEEILHEMEARL----------EEEEDRGQQL-----QAERKKMAQQ 951
Query: 562 DLDALPRLDRDNSAAHAFVADQTTVRIPPPVNMKELLLALQDVLKRAELFSGHAIRREAL 741
LD +L+ + +A ++ T +++ +L + D + + +E
Sbjct: 952 MLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDDILVMDD--------QNNKLSKERK 1002
Query: 742 SVRQRMGDILAHL--EDGKFHPFTTLFTAEEGKLGVLVTFLAILELAKEQL 888
+ +R+ D+ +L E+ K T L E + L L E ++++L
Sbjct: 1003 LLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1053
>gi|1695235 (U41543) F46H5.6 gene product [Caenorhabditis elegans]
Length = 416
Score = 32.1 bits (71), Expect = 7.8
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 216 PSGPVYPPRCTGSHS*CIRRSSG-PAAVSH--PPSEPEYPRHSGC*NHPTIR*LHQCDAG 386
P P YPP HS I S+ PA + H PP +P+YP+ +P R H +AG
Sbjct: 158 PPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQPQYPQQQPP-QYPQQRQQHSYNAG 216
>gi|3877448|emb|CAB03116.1| (Z81086) predicted using Genefinder;
similar to cuticulin [Caenorhabditis elegans]
Length = 610
Score = 32.1 bits (71), Expect = 7.8
Identities = 17/37 (45%), Positives = 21/37 (55%)
Frame = +3
Query: 228 VYPPRCTGSHS*CIRRSSGPAAVSHPPSEPEYPRHSG 338
+ PP+C+G HS IR S GPA EPE H+G
Sbjct: 322 ITPPQCSG-HSHGIRGSKGPAEHKFVNLEPETDHHNG 357
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256894406
Number of Sequences: 443958
Number of extensions: 5455381
Number of successful extensions: 19433
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 19413
Number of HSP's gapped (non-prelim): 31
length of query: 339
length of database: 136,619,797
effective HSP length: 55
effective length of query: 283
effective length of database: 112,202,107
effective search space: 31753196281
effective search space used: 31753196281
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)