BLASTX 2.0.10 [Aug-26-1999]
Query= XF-02A11-GL34
(291 letters)
Database: nr
443,958 sequences; 136,619,797 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|267464|sp|P29943|YCB1_PSEDE HYPOTHETICAL 10.3 KD PROTEIN IN ... 62 1e-09
gi|2982456|emb|CAA18220.1| (AL022223) putative protein [Arabido... 60 5e-09
gi|3953459 (AC002328) F20N2.4 [Arabidopsis thaliana] 59 8e-09
gi|2851548|sp|P15298|BOLA_ECOLI BOLA PROTEIN 57 3e-08
gi|72961|pir||BVECBA bolA protein - Escherichia coli >gi|41070|... 57 3e-08
gi|3023402|sp|Q56585|BOLA_VIBAL BOLA PROTEIN HOMOLOG >gi|212624... 53 6e-07
gi|4929755|gb|AAD34138.1|AF151901_1 (AF151901) CGI-143 protein ... 53 8e-07
gi|3025255|sp|P91375|YN1I_CAEEL HYPOTHETICAL 12.1 KD PROTEIN K1... 51 3e-06
gi|3879792|emb|CAB03343.1| (Z81120) similar to Ank repeat; cDNA... 47 5e-05
gi|3024789|sp|Q12238|UV31_SCHPO UV-INDUCED PROTEIN UVI31 >gi|13... 46 1e-04
gi|5305148|emb|CAB46187.1| (AJ243397) BolA protein [Pseudomonas... 45 1e-04
gi|2408094|emb|CAB16299.1| (Z99168) hypothetical protein [Schiz... 45 1e-04
gi|5139535|emb|CAB45536.1| (AJ243174) BolA protein [Pseudomonas... 43 5e-04
gi|3860807|emb|CAA14707| (AJ235271) BOLA PROTEIN HOMOLOG (bolA)... 43 7e-04
gi|5305151|emb|CAB46189.1| (AJ243398) BolA protein [Pseudomonas... 40 0.004
gi|1168682|sp|P43780|BOLA_HAEIN BOLA PROTEIN HOMOLOG >gi|107517... 40 0.006
gi|6321218|ref|NP_011295.1|YGL220W| Ygl220wp >gi|1723962|sp|P53... 32 1.7
gi|3046871|dbj|BAA25573| (AB003753) high sulfur protein B2E [Ra... 31 2.9
gi|1905906 (AD000092) hypothetical human serine-threonine prote... 31 2.9
gi|4589590|dbj|BAA76817.1| (AB023190) KIAA0973 protein [Homo sa... 31 2.9
gi|3874010|emb|CAA90055.1| (Z49886) cDNA EST yk309a8.5 comes fr... 31 3.8
gi|1118033 (U41532) Similar to glucose transporter (weak). [Cae... 30 5.0
gi|3228237|emb|CAA07188| (AJ006692) ultra high sulfer keratin [... 30 6.6
gi|1176831|sp|P45026|YRBA_HAEIN HYPOTHETICAL PROTEIN HI1082 >gi... 29 8.6
gi|3924743|emb|CAB04184.1| (Z81513) F26D2.14 [Caenorhabditis el... 29 8.6
>gi|267464|sp|P29943|YCB1_PSEDE HYPOTHETICAL 10.3 KD PROTEIN IN COBS
5'REGION (ORF1) >gi|94974|pir||A38162 hypothetical
protein 1 - Pseudomonas sp >gi|151166 (M62869) ORF1
[Pseudomonas denitrificans]
Length = 93
Score = 62.1 bits (148), Expect = 1e-09
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRG--HFSVLIVTPMFAGKTLLARHRA 204
E I+ L +AF P RLEV +ES +H GH DG G H V IV+ FAG + +ARHRA
Sbjct: 5 ETIEKKLIEAFHPERLEVINESHQHTGHQPGFDGTGESHMRVRIVSSAFAGMSRVARHRA 64
Query: 205 VYAALGSMMETDIHALSIQ 261
+ L ++ +HAL+++
Sbjct: 65 INDLLKPELDAGLHALAVE 83
>gi|2982456|emb|CAA18220.1| (AL022223) putative protein [Arabidopsis
thaliana]
Length = 371
Score = 60.1 bits (143), Expect = 5e-09
Identities = 31/66 (46%), Positives = 44/66 (65%), Gaps = 5/66 (7%)
Frame = +1
Query: 67 PSRLEVKDESDRHIGHSGAR-----DGRGHFSVLIVTPMFAGKTLLARHRAVYAALGSMM 231
P LEV+D S +H GH+ R DG HF++ IV+ F GK+L+ RHR +Y L +
Sbjct: 295 PVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSLVKRHRLIYDLLQDEL 354
Query: 232 ETDIHALSIQA 264
++ +HALSI A
Sbjct: 355 KSGLHALSIVA 365
>gi|3953459 (AC002328) F20N2.4 [Arabidopsis thaliana]
Length = 160
Score = 59.3 bits (141), Expect = 8e-09
Identities = 33/83 (39%), Positives = 47/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 10 GVAVNRVEQIQIVLGDAFAPSRLEVKDESDRHIGHSGAR---DGRGHFSVLIVTPMFAGK 180
G NR +++ L P L ++D S +H GH+G + D HF+V IV+ F G
Sbjct: 63 GAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEGM 122
Query: 181 TLLARHRAVYAALGSMMETDIHALSI 258
L+ RHR VY L ++T +HALSI
Sbjct: 123 NLVKRHRLVYHLLREELDTGLHALSI 148
>gi|2851548|sp|P15298|BOLA_ECOLI BOLA PROTEIN
Length = 105
Score = 57.4 bits (136), Expect = 3e-08
Identities = 31/76 (40%), Positives = 45/76 (58%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVY 210
E+I+ L AF P LEV DES RH +G+ HF V++V+ F G+ L RHR +Y
Sbjct: 5 ERIEEKLRAAFQPVFLEVVDESYRHNVPAGSES---HFKVVLVSDRFTGERFLNRHRMIY 61
Query: 211 AALGSMMETDIHALSI 258
+ L + T +HAL++
Sbjct: 62 STLAEELSTTVHALAL 77
>gi|72961|pir||BVECBA bolA protein - Escherichia coli
>gi|41070|emb|CAA35633| (X17642) bolA protein (AA 1-116)
[Escherichia coli] >gi|1773119 (U82664) bolA
[Escherichia coli] >gi|1786638 (AE000149) possible
regulator of murein genes [Escherichia coli]
Length = 116
Score = 57.4 bits (136), Expect = 3e-08
Identities = 31/76 (40%), Positives = 45/76 (58%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVY 210
E+I+ L AF P LEV DES RH +G+ HF V++V+ F G+ L RHR +Y
Sbjct: 16 ERIEEKLRAAFQPVFLEVVDESYRHNVPAGSES---HFKVVLVSDRFTGERFLNRHRMIY 72
Query: 211 AALGSMMETDIHALSI 258
+ L + T +HAL++
Sbjct: 73 STLAEELSTTVHALAL 88
>gi|3023402|sp|Q56585|BOLA_VIBAL BOLA PROTEIN HOMOLOG
>gi|2126248|pir||S51013 cell division protein bolA -
Vibrio alginolyticus >gi|663269|emb|CAA85475.1| (Z37111)
BolA [Vibrio alginolyticus] >gi|1092975|prf||2102277A
bolA gene [Vibrio alginolyticus]
Length = 102
Score = 53.1 bits (125), Expect = 6e-07
Identities = 31/82 (37%), Positives = 44/82 (52%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVY 210
E I+ L PS L+V +ES H G+ HF V++V+ FAG+ L+ RHR V+
Sbjct: 4 EIIEKKLHSELQPSYLKVINESYMHNVPPGSES---HFKVIVVSDSFAGQRLIGRHRQVH 60
Query: 211 AALGSMMETDIHALSIQALVDE 276
L ++ IHAL+I DE
Sbjct: 61 QILADELDNHIHALAIHTYTDE 82
>gi|4929755|gb|AAD34138.1|AF151901_1 (AF151901) CGI-143 protein
[Homo sapiens]
Length = 137
Score = 52.7 bits (124), Expect = 8e-07
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 16 AVNRVEQ-IQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLA 192
A+ VE I+ L +A +P LE+++ES GH+ HF V +V+ F G + L
Sbjct: 28 AIGPVEAAIRTKLEEALSPEVLELRNESG---GHAVPPGSETHFRVAVVSSRFEGLSPLQ 84
Query: 193 RHRAVYAALGSMMETDIHALSIQA 264
RHR V+AAL + +HAL+IQA
Sbjct: 85 RHRLVHAALAEELGGPVHALAIQA 108
>gi|3025255|sp|P91375|YN1I_CAEEL HYPOTHETICAL 12.1 KD PROTEIN
K11H12.1 IN CHROMOSOME IV >gi|1825597 (U88168) similar
to E. coli bola protein (SP:P15298) [Caenorhabditis
elegans]
Length = 108
Score = 50.8 bits (119), Expect = 3e-06
Identities = 29/70 (41%), Positives = 37/70 (52%)
Frame = +1
Query: 58 AFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVYAALGSMMET 237
AF P LEV+ ES H GA HF V +V+ F GK ++ RHR V L + T
Sbjct: 20 AFQPKHLEVECESHLHNVPKGAEK---HFRVQVVSDEFEGKRVIERHRLVNTCLAKELAT 76
Query: 238 DIHALSIQAL 267
+HAL I A+
Sbjct: 77 TVHALRIDAI 86
>gi|3879792|emb|CAB03343.1| (Z81120) similar to Ank repeat; cDNA EST
yk400c12.5 comes from this gene; cDNA EST EMBL:D75223
comes from this gene; cDNA EST yk400c12.3 comes from
this gene [Caenorhabditis elegans]
Length = 376
Score = 46.9 bits (109), Expect = 5e-05
Identities = 34/83 (40%), Positives = 45/83 (53%)
Frame = +1
Query: 28 VEQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAV 207
VE++ +L +A P L+V DES G DG F +LIV+ F GK L HR V
Sbjct: 5 VERVNALLTEAIKPQILKVVDES-------GGCDGY-KFRLLIVSEAFEGKCTLQSHRLV 56
Query: 208 YAALGSMMETDIHALSIQALVDE 276
AAL +M+ + HAL+I A E
Sbjct: 57 QAALAPIMD-ETHALTICAYTPE 78
>gi|3024789|sp|Q12238|UV31_SCHPO UV-INDUCED PROTEIN UVI31
>gi|1325966|emb|CAA96579| (Z72498) uvi31+
[Schizosaccharomyces pombe] >gi|1381578 (U57848) Uvi31
[Schizosaccharomyces pombe] >gi|2467268|emb|CAB16898.1|
(Z99759) uv-induced protein uvi31 [Schizosaccharomyces
pombe]
Length = 102
Score = 45.7 bits (106), Expect = 1e-04
Identities = 27/80 (33%), Positives = 44/80 (54%), Gaps = 4/80 (5%)
Frame = +1
Query: 19 VNRVEQIQIVLGDAFAPSRLEVKDESDRHIGH---SGARD-GRGHFSVLIVTPMFAGKTL 186
+ R ++I L +A ++ + ++S +H H G D HF + IV+P F+G +
Sbjct: 9 MGRQDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSR 68
Query: 187 LARHRAVYAALGSMMETDIHALSI 258
+ARHR VY L + +HAL I
Sbjct: 69 VARHRLVYGLLKDEFDGGLHALQI 92
>gi|5305148|emb|CAB46187.1| (AJ243397) BolA protein [Pseudomonas
aureofaciens]
Length = 68
Score = 45.3 bits (105), Expect = 1e-04
Identities = 26/67 (38%), Positives = 37/67 (54%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVY 210
++I+ LG A P L+V DES H +R HF ++V+ FAG + RH+ VY
Sbjct: 5 QRIESALG-ALQPEHLQVLDESHMH-----SRGLETHFKAVLVSEQFAGLNSVKRHQKVY 58
Query: 211 AALGSMM 231
A LG +M
Sbjct: 59 ATLGELM 65
>gi|2408094|emb|CAB16299.1| (Z99168) hypothetical protein
[Schizosaccharomyces pombe]
Length = 80
Score = 45.3 bits (105), Expect = 1e-04
Identities = 26/75 (34%), Positives = 46/75 (60%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVY 210
+Q+++++ + P+ +E++D S G G +F V+IV+P+F GK+ LARHR V
Sbjct: 5 QQLELLIQNTLEPTHIEIQDMS----GGCGQ-----NFEVIIVSPLFEGKSTLARHRLVN 55
Query: 211 AALGSMMETDIHALS 255
L +++ DIHA +
Sbjct: 56 HKLQEVIK-DIHAFT 69
>gi|5139535|emb|CAB45536.1| (AJ243174) BolA protein [Pseudomonas
fluorescens]
Length = 99
Score = 43.4 bits (100), Expect = 5e-04
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVY 210
++I+ LG P L+V DES H +R + HF ++V+ F G + RH+ VY
Sbjct: 5 QRIESTLG-LLQPEHLQVLDESHMH-----SRGLQTHFKAVVVSQQFEGLNRVKRHQKVY 58
Query: 211 AALGSMMETDIHALSI 258
LG +M + HAL++
Sbjct: 59 GTLGELM-GEFHALAL 73
>gi|3860807|emb|CAA14707| (AJ235271) BOLA PROTEIN HOMOLOG (bolA)
[Rickettsia prowazekii]
Length = 80
Score = 43.0 bits (99), Expect = 7e-04
Identities = 28/83 (33%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 19 VNRVEQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGR-GHFSVLIVTPMFAGKTLLAR 195
+NR+ +IQ L P E+ DES +H H DG H + I G++L+A
Sbjct: 1 MNRIARIQEKLS-VLKPHFQEIIDESYKHTNHY---DGTYSHIKIRISAETLQGQSLIAH 56
Query: 196 HRAVYAALGSMMETDIHALSIQAL 267
HR + L + +HALSI+ L
Sbjct: 57 HRTINNLLADEFNSGLHALSIEVL 80
>gi|5305151|emb|CAB46189.1| (AJ243398) BolA protein [Pseudomonas
putida]
Length = 68
Score = 40.2 bits (92), Expect = 0.004
Identities = 23/67 (34%), Positives = 35/67 (51%)
Frame = +1
Query: 31 EQIQIVLGDAFAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVY 210
++I+ LG P L+V DES H +R + HF ++V+ F G + RH+ VY
Sbjct: 5 QRIESTLG-LLQPEHLQVLDESHMH-----SRGLQTHFKAVVVSRQFEGLNRVKRHQKVY 58
Query: 211 AALGSMM 231
LG +M
Sbjct: 59 GTLGELM 65
>gi|1168682|sp|P43780|BOLA_HAEIN BOLA PROTEIN HOMOLOG
>gi|1075173|pir||B64052 probable murein gene regulator
(bolA) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|644852 (U20229) BOLA [Haemophilus influenzae]
>gi|1573121 (U32702) transcriptional regulator, putative
(bolA) [Haemophilus influenzae Rd]
Length = 103
Score = 39.9 bits (91), Expect = 0.006
Identities = 23/72 (31%), Positives = 35/72 (47%)
Frame = +1
Query: 61 FAPSRLEVKDESDRHIGHSGARDGRGHFSVLIVTPMFAGKTLLARHRAVYAALGSMMETD 240
F P L +++ES H+ HS R HF +IV+ F + RH+ +Y L +
Sbjct: 15 FQPHFLAIENES--HLHHSN-RGSESHFKCVIVSADFKNIRKVQRHQRIYQLLNEELNHS 71
Query: 241 IHALSIQALVDE 276
IHAL++ E
Sbjct: 72 IHALALHLFTPE 83
>gi|6321218|ref|NP_011295.1|YGL220W| Ygl220wp
>gi|1723962|sp|P53082|YGX0_YEAST HYPOTHETICAL 14.1 KD
PROTEIN IN NIF3-CLG1 INTERGENIC REGION
>gi|2131624|pir||S64242 hypothetical protein YGL220w -
yeast (Saccharomyces cerevisiae)
>gi|1322867|emb|CAA96936| (Z72742) ORF YGL220w
[Saccharomyces cerevisiae]
Length = 120
Score = 31.7 bits (70), Expect = 1.7
Identities = 16/45 (35%), Positives = 27/45 (59%)
Frame = +1
Query: 142 FSVLIVTPMFAGKTLLARHRAVYAALGSMMETDIHALSIQALVDE 276
F +++V+ F GK+ L R RAV A+ ++ +IHA S + +E
Sbjct: 70 FDIVVVSDFFQGKSKLMRSRAVNKAVKEELQ-EIHAFSCKCYTEE 113
>gi|3046871|dbj|BAA25573| (AB003753) high sulfur protein B2E [Rattus
norvegicus]
Length = 188
Score = 30.9 bits (68), Expect = 2.9
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = +3
Query: 12 CCCESCRTDSDCAWGCF---CTVTVGSEG*K*SPYWSFRCA*WAWAFQCFDCHADVCWKN 182
CC SC S C C C S+ P S Q C C +N
Sbjct: 34 CCQPSCSQSSCCQPSCTQSSCCQPTCSQSSCCQPTCSQSSCCQPSCCQT-SCCQPTCCQN 92
Query: 183 AACSASCCVCGIGFHDGNG 239
++C SCC G G G+G
Sbjct: 93 SSCQTSCCGTGSGQEGGSG 111
>gi|1905906 (AD000092) hypothetical human serine-threonine protein
kinase R31240_1 [Homo sapiens]
Length = 1237
Score = 30.9 bits (68), Expect = 2.9
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 287 CRSPSSTNAWIESAWISVSIMEPNAAYTARCRASSVFPANIGVTIKTLKCPRP 129
C +PSS + A + S +P T+RC A +V PA G+T K + P P
Sbjct: 1184 CSAPSSAVTPVPPASLLGSGTKPQVGLTSRCPAEAVPPA--GLTKKGVSSPAP 1234
>gi|4589590|dbj|BAA76817.1| (AB023190) KIAA0973 protein [Homo sapiens]
Length = 1583
Score = 30.9 bits (68), Expect = 2.9
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 287 CRSPSSTNAWIESAWISVSIMEPNAAYTARCRASSVFPANIGVTIKTLKCPRP 129
C +PSS + A + S +P T+RC A +V PA G+T K + P P
Sbjct: 1530 CSAPSSAVTPVPPASLLGSGTKPQVGLTSRCPAEAVPPA--GLTKKGVSSPAP 1580
>gi|3874010|emb|CAA90055.1| (Z49886) cDNA EST yk309a8.5 comes from
this gene; cDNA EST yk309a8.3 comes from this gene
[Caenorhabditis elegans]
Length = 152
Score = 30.5 bits (67), Expect = 3.8
Identities = 20/73 (27%), Positives = 21/73 (28%)
Frame = +3
Query: 3 GVGCCCESCRTDSDCAWGCFCTVTVGSEG*K*SPYWSFRCA*WAWAFQCFDCHADVCWKN 182
G GCCC R C C CT C +C C C
Sbjct: 68 GCGCCCCRPRCCCCCRPKCCCT-----------------CCRTCCCTRCCTCCRPCCC-G 109
Query: 183 AACSASCCVCGIG 221
C CC CG G
Sbjct: 110 CGCGCGCCGCGGG 122
>gi|1118033 (U41532) Similar to glucose transporter (weak).
[Caenorhabditis elegans]
Length = 361
Score = 30.1 bits (66), Expect = 5.0
Identities = 28/78 (35%), Positives = 36/78 (45%), Gaps = 9/78 (11%)
Frame = -1
Query: 249 RVDIRFHHGTQCRIHSTMPS---------KQRFSSKHRRDNQNTEMPTPITRTGMTNMAI 97
+V IRF+HG C IH + S K R S K DN+ T T
Sbjct: 83 KVSIRFYHGKNCTIHEVVTSFIKEKNLTDKNRISLKQIWDNE-TLREVSFTCFNELFYRQ 141
Query: 96 TFILHFQP*RCKSIPKHNLNLFDTIHS 16
T IL + C ++ N+NL TI S
Sbjct: 142 TTILGVENSICTAL---NINLIITIFS 165
>gi|3228237|emb|CAA07188| (AJ006692) ultra high sulfer keratin [Homo
sapiens]
Length = 194
Score = 29.7 bits (65), Expect = 6.6
Identities = 17/69 (24%), Positives = 24/69 (34%)
Frame = +3
Query: 15 CCESCRTDSDCAWGCFCTVTVGSEG*K*SPYWSFRCA*WAWAFQCFDCHADVCWKNAACS 194
CC+ C + S C C C+ GS + S C C +++ C
Sbjct: 116 CCKPCCSQSSCCKPCSCSSGCGSSCCQSS------------------CCKPCCSQSSCCK 157
Query: 195 ASCCVCGIG 221
CC G G
Sbjct: 158 PCCCSSGCG 166
>gi|1176831|sp|P45026|YRBA_HAEIN HYPOTHETICAL PROTEIN HI1082
>gi|1074637|pir||I64165 hypothetical protein HI1082 -
Haemophilus influenzae (strain Rd KW20) >gi|1574636
(U32788) conserved hypothetical protein [Haemophilus
influenzae Rd]
Length = 85
Score = 29.3 bits (64), Expect = 8.6
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 121 ARDGRGHFSVLIVTPMFAGKTLLARHRAVYAALGSMMET-DIHALSIQALVDE 276
A+ HF V++V+ A + + + + +YA L T +IHAL+I+ E
Sbjct: 21 AQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTGEIHALTIKTYTVE 73
>gi|3924743|emb|CAB04184.1| (Z81513) F26D2.14 [Caenorhabditis
elegans]
Length = 269
Score = 29.3 bits (64), Expect = 8.6
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = +3
Query: 99 SPYWSFRCA*WAWAFQCFDCHADVCWKNAACSASCCVC 212
+P S CA WA C + H V + A C+ +C +C
Sbjct: 232 NPDSSSSCAAWAANGFCTNTHYTVARRKATCATTCRIC 269
Database: nr
Posted date: Jan 18, 2000 12:56 PM
Number of letters in database: 136,619,797
Number of sequences in database: 443,958
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85502764
Number of Sequences: 443958
Number of extensions: 1692792
Number of successful extensions: 6623
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6578
Number of HSP's gapped (non-prelim): 33
length of query: 97
length of database: 136,619,797
effective HSP length: 50
effective length of query: 46
effective length of database: 114,421,897
effective search space: 5263407262
effective search space used: 5263407262
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)