BLASTX 2.0.10 [Aug-26-1999]
Query= XF-00P00-GL61
(303 letters)
Database: nr
457,798 sequences; 140,871,481 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1175363|sp|P44094|YA14_HAEIN HYPOTHETICAL PROTEIN HI1014 >gi... 34 0.48
gi|6448469|dbj|BAA86911.1| (AB011377) homologue of Sarcophaga 2... 33 0.63
gi|3449245|emb|CAA20389| (AL031317) putative integral membrane ... 30 5.5
gi|1771202|emb|CAA68043| (X99710) transcription factor [Lactoco... 30 7.2
gi|4155185 (AE001495) ACETYL-COA ACETYLTRANSFERASE [Helicobacte... 29 9.4
gi|4826874|ref|NP_005076.1|| nucleoporin 214kD (CAIN) >gi|54838... 29 9.4
>gi|1175363|sp|P44094|YA14_HAEIN HYPOTHETICAL PROTEIN HI1014
>gi|1074605|pir||D64018 hypothetical protein HI1014 -
Haemophilus influenzae (strain Rd KW20) >gi|1574046
(U32782) conserved hypothetical protein [Haemophilus
influenzae Rd]
Length = 315
Score = 33.6 bits (75), Expect = 0.48
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 133 CGGFNLTALWGLDEAITVDMTAVFTLVAGVSKYPD---SLGYEEDFKA 267
C NL GLDE IT + A+F L A VS + + LGYE +F A
Sbjct: 50 CYEMNLRYPTGLDELITEETDAIFHLAAIVSSHAEQDPDLGYETNFLA 97
>gi|6448469|dbj|BAA86911.1| (AB011377) homologue of Sarcophaga
26,29kDa proteinase [Periplaneta americana]
Length = 552
Score = 33.2 bits (74), Expect = 0.63
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 71 MTPTRVGTLLISCWHGGTPTVAEASTLLRYGDLTRQSRST*LPC 202
+TP + ++ SCW GT E + L+YG L R S+ + C
Sbjct: 346 VTPVKDQSVCGSCWSFGTTGTIEGAYFLKYGHLVRLSQQALIDC 389
>gi|3449245|emb|CAA20389| (AL031317) putative integral membrane
protein [Streptomyces coelicolor]
Length = 411
Score = 30.1 bits (66), Expect = 5.5
Identities = 13/29 (44%), Positives = 23/29 (78%)
Frame = -2
Query: 239 LSGYLLTPATKVNTAVMSTVIASSSPHSA 153
+SG+L+ PA + AV++TV+A+S+ H+A
Sbjct: 18 ISGWLVRPAGRHPWAVLATVLAASAAHAA 46
>gi|1771202|emb|CAA68043| (X99710) transcription factor [Lactococcus
lactis]
Length = 327
Score = 29.7 bits (65), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 167 SPHSAVRLKPPQLSAFHHASRKLATCRLWL 78
S HS + +K Q+ H A + L +C LWL
Sbjct: 30 SCHSELLIKNGQIKVLHFAHKSLKSCNLWL 59
>gi|4155185 (AE001495) ACETYL-COA ACETYLTRANSFERASE [Helicobacter
pylori J99]
Length = 391
Score = 29.3 bits (64), Expect = 9.4
Identities = 22/76 (28%), Positives = 37/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 279 LAQDGLEVFFIAQAVGVLADACDQGKHGSHVDRDCLVKSP*RSKVEASATVGVPPCQQEI 100
+ DGL F +G+ AD Q H S D+D +S+++A A + Q+EI
Sbjct: 143 MIHDGLWDAFNDYHMGITADNVAQAYHISREDQDAFAL---QSQLKARAAINAGKFQEEI 199
Query: 99 S--NVPTLVGVILGDEDK 52
+ + GV++ ED+
Sbjct: 200 TPIEIANKKGVVVFKEDE 217
>gi|4826874|ref|NP_005076.1|| nucleoporin 214kD (CAIN)
>gi|548384|sp|P35658|N214_HUMAN NUCLEAR PORE COMPLEX
PROTEIN NUP214 (NUCLEOPORIN NUP214) (214 KD NUCLEOPORIN)
(CAN PROTEIN) >gi|284374|pir||S26058 probable
transforming protein (can) - human
>gi|29653|emb|CAA45535| (X64228) putative oncogene [Homo
sapiens]
Length = 2090
Score = 29.3 bits (64), Expect = 9.4
Identities = 22/59 (37%), Positives = 32/59 (53%)
Frame = -2
Query: 269 MALKSSS*PRLSGYLLTPATKVNTAVMSTVIASSSPHSAVRLKPPQLSAFHHASRKLAT 93
+A+KSS P T A KVN + T A+S+P S+ + PP +S F AS+ A+
Sbjct: 570 IAMKSSFPPS------TSAVKVNLSEKFTAAATSTPVSSSQSAPP-MSPFSSASKPAAS 621
Database: nr
Posted date: Feb 20, 2000 12:20 AM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75762965
Number of Sequences: 457798
Number of extensions: 1350540
Number of successful extensions: 4218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4215
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 140,871,481
effective HSP length: 51
effective length of query: 49
effective length of database: 117,523,783
effective search space: 5758665367
effective search space used: 5758665367
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)