BLASTX 2.0.10 [Aug-26-1999]
Query= XF-00P00-GL08
(717 letters)
Database: nr
457,798 sequences; 140,871,481 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|348627|pir||G44020 TrbF - plasmid RK2 >gi|152560 (M93696) tr... 214 7e-55
gi|1572552 (U67194) TrbF [Enterobacter aerogenes] 206 2e-52
gi|2499047|sp|P55403|TRBF_RHISN PROBABLE CONJUGAL TRANSFER PROT... 120 1e-26
gi|1730022|sp|P54914|TRBF_AGRT6 CONJUGAL TRANSFER PROTEIN TRBF ... 115 3e-25
gi|2982712|dbj|BAA25281| (AB006858) trbF [Agrobacterium tumefac... 111 6e-24
gi|6007535|gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog [B... 32 4.0
gi|4105699|gb|AAD02501| (AF049870) receptor kinase [Arabidopsis... 32 5.3
gi|133290|sp|P28615|RP54_ALCEU RNA POLYMERASE SIGMA-54 FACTOR >... 32 5.3
gi|2160756 (U96879) CLV1 receptor kinase [Arabidopsis thaliana] 32 6.9
gi|2252830 (AF013293) weak similarity to receptor protein kinas... 32 6.9
gi|2804429 (AF043695) similar to the protein phosphates 2c fami... 32 6.9
gi|6721118|gb|AAF26772.1|AC007396_21 (AC007396) T4O12.5 [Arabid... 32 6.9
gi|1652806|dbj|BAA17725| (D90908) isopenicillin N epimerase [Sy... 32 6.9
gi|6434445|emb|CAB60910.1| (AL132896) predicted using Genefinde... 31 9.1
>gi|348627|pir||G44020 TrbF - plasmid RK2 >gi|152560 (M93696) trbF
[Plasmid RP4]
Length = 252
Score = 214 bits (539), Expect = 7e-55
Identities = 106/220 (48%), Positives = 146/220 (66%), Gaps = 1/220 (0%)
Frame = +1
Query: 55 TANPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQ 234
T NPYL ARR+WN HVG ++ Q VG+L ++I LAAVGG+ +IGSQSKF+P V++
Sbjct: 32 TDNPYLTARRTWNDHVGSVVSQKQTWQVVGILSLMIVLAAVGGIIHIGSQSKFVPYVYEV 91
Query: 235 DGSGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDP 414
D G T ++ +A +V++F+ + RLVTPD LQ KAV + Y L PNDP
Sbjct: 92 DKLGQTAAVGPMTRASKADPRVIHASVAEFVGDARLVTPDVALQRKAVYRLYAKLGPNDP 151
Query: 415 ATLKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAP 594
AT K E+LNGT + +PF RAA E V+ ++ SV+ Q+ DTWQ+DW ET R R G +KG P
Sbjct: 152 ATAKMNEWLNGTADASPFARAAVETVSTEITSVIPQTPDTWQVDWVETTRDRQGVVKGQP 211
Query: 595 YMMRALVTIYQNKDT-EVKPEKMLINPHFIFVKDYNWSKQL 714
MRALVT+Y + T + K E++ NP I+V+D++WS+ L
Sbjct: 212 VRMRALVTVYVVEPTADTKEEQLRNNPAGIYVRDFSWSRLL 252
>gi|1572552 (U67194) TrbF [Enterobacter aerogenes]
Length = 260
Score = 206 bits (518), Expect = 2e-52
Identities = 102/216 (47%), Positives = 140/216 (64%), Gaps = 1/216 (0%)
Frame = +1
Query: 61 NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 240
NPYL ARR+WN HVG ++ Q +G+L +LI LA VGG+ +IGSQSKFIP V + D
Sbjct: 42 NPYLAARRTWNDHVGGVVSQRQTWQVIGILSLLIALAGVGGVIHIGSQSKFIPYVVEVDK 101
Query: 241 SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 420
G T++ +A AV+D+++ R+V+PD LQ K V K Y PNDPAT
Sbjct: 102 LGQTVAAGPVQAAGKADPRVIHAAVADWMSCARMVSPDVALQRKCVFKAYSMFAPNDPAT 161
Query: 421 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAPYM 600
K E+LNGT +++PF RA EMV+V++K+V+ Q+ DTWQ++W ET R R G+LKG P
Sbjct: 162 PKMNEWLNGTPDSSPFKRAEKEMVSVEIKTVIPQTPDTWQVEWVETTRDRQGTLKGQPVT 221
Query: 601 MRALVTIYQNKDT-EVKPEKMLINPHFIFVKDYNWSK 708
RALVT Y + T E++ NP I+V+DY+WS+
Sbjct: 222 WRALVTTYIAEVTPNTTDEQLRNNPLSIYVRDYSWSR 258
>gi|2499047|sp|P55403|TRBF_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN
TRBF >gi|2182346 (AE000068) TrbF [Rhizobium sp. NGR234]
Length = 220
Score = 120 bits (298), Expect = 1e-26
Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 1/218 (0%)
Frame = +1
Query: 61 NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 240
NPYL AR+ W G ++ + VG+LG+ + + G Y+ ++ K +P + Q D
Sbjct: 9 NPYLAARQEWTERYGSYVRAAAAWRTVGILGLAMAVIGFGYAMYLSTEVKLVPYIVQVDK 68
Query: 241 SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 420
G +++ P+ I A V R + +F+T+ R +TPDA +Q + + +TY L +DP+T
Sbjct: 69 LGTSVTTGFPEQIEYADVRVVRATLGNFVTSFRSITPDAAVQKQYIDRTYVLLRTSDPST 128
Query: 421 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGA-PY 597
K + G +PF +A V ++V +++ S T+QIDW E R R G G +
Sbjct: 129 EKINAWFRG---NSPFEKAKTATVAIEVNNIVALSNQTYQIDWTEYERDRKGKEIGTRRF 185
Query: 598 MMRALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 714
A VT+ +D + +NP ++V+D++W+ QL
Sbjct: 186 RGIATVTLTAPQDEAT----IRLNPIGLYVRDFDWTAQL 220
>gi|1730022|sp|P54914|TRBF_AGRT6 CONJUGAL TRANSFER PROTEIN TRBF
>gi|1163223 (U43675) TrbF [Agrobacterium tumefaciens]
Length = 220
Score = 115 bits (286), Expect = 3e-25
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 2/218 (0%)
Frame = +1
Query: 61 NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 240
NPY+ AR WN G ++ + VG+ GM + + G Y +Q K IP + + D
Sbjct: 9 NPYIAARNEWNERYGSYVKAAAAWRIVGITGMTMAVIGFGYALYQSTQVKLIPYIVEVDK 68
Query: 241 SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 420
G ++ P I A R + F++N R VTPDA +Q + + +TYG L +DPAT
Sbjct: 69 LGTAVNAGFPQQIEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYGLLRTSDPAT 128
Query: 421 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAPYM 600
K + + +PF +A V ++V +++ S ++Q+DW E R R G + A
Sbjct: 129 EKVNAWF---RSNSPFEKAKTATVAIEVNNIVALSNQSYQVDWTEFERDRRGK-ETATRR 184
Query: 601 MR--ALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 714
R A VT+ +D V + +NP ++++D++W+ QL
Sbjct: 185 FRGIATVTLTPPQDEGV----IRLNPIGLYLRDFDWTAQL 220
>gi|2982712|dbj|BAA25281| (AB006858) trbF [Agrobacterium
tumefaciens] >gi|3766182 (AF057718) TrbF [Agrobacterium
tumefaciens] >gi|6498183|dbj|BAA87635.1| (AB016260)
Probable trbF gene [Agrobacterium tumefaciens]
Length = 220
Score = 111 bits (275), Expect = 6e-24
Identities = 66/218 (30%), Positives = 109/218 (49%), Gaps = 1/218 (0%)
Frame = +1
Query: 61 NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 240
NPY+ AR WN G ++ + VG+ GM++ + Y +Q K +P + + D
Sbjct: 9 NPYIAARTEWNERYGSYVKAAAAWRLVGVTGMIMAVIGFSYALYQSTQVKLVPYIVEVDK 68
Query: 241 SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 420
G + P I A R + F++N R VTPDA +Q + + +TY L +DPAT
Sbjct: 69 LGTASNAGFPQQIEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYALLRTSDPAT 128
Query: 421 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGA-PY 597
K + + ++PF +A N V V+V +++ S ++QIDW E R R G +
Sbjct: 129 EKVNAWF---RSSSPFEKAKNATVAVEVNNIVALSNQSYQIDWTEFERDRRGKETATRRF 185
Query: 598 MMRALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 714
A VT+ +D V + +NP ++++D +W+ QL
Sbjct: 186 RSIATVTLTPPQDEGV----IRLNPIGLYLRDLDWTAQL 220
>gi|6007535|gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog
[Bartonella henselae]
Length = 202
Score = 32.5 bits (72), Expect = 4.0
Identities = 41/188 (21%), Positives = 78/188 (40%), Gaps = 2/188 (1%)
Frame = +1
Query: 133 IFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRPDHIPEARVDDYRTA 312
+ GL+ + + LA V +T + + F+ V G T+S + +DY A
Sbjct: 16 VLFGLMTIALALA-VAALTPLKTVEPFVIRVDNSTGIIETVSALKETP------NDYDEA 68
Query: 313 VSDFITNIRLVTPDAGLQHKAVLKTYGY--LVPNDPATLKTKEYLNGTKETNPFNRAANE 486
++ + + + V G Q + L+ + + ++ G +P N N
Sbjct: 69 ITRYFAS-KYVRAREGFQLSEAEHNFRLVSLLSSPEEQSRFAKWYAGNNPESPQNIYQNM 127
Query: 487 MVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAPYMMRALVTIYQNKDTEVKPEKMLI 666
+ V +KS+ SKD Q+ + +TVR + + + + L Y N ++ + LI
Sbjct: 128 IATVTIKSISFLSKDLIQVRYYKTVRELNDK-ENISHWVSILNFSYIN--AQISTQDRLI 184
Query: 667 NPHFIFVKDY 696
NP V +Y
Sbjct: 185 NPLGFQVSEY 194
>gi|4105699|gb|AAD02501| (AF049870) receptor kinase [Arabidopsis
thaliana]
Length = 980
Score = 32.1 bits (71), Expect = 5.3
Identities = 27/115 (23%), Positives = 45/115 (38%)
Frame = +1
Query: 91 NSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRP 270
N +G+++ S+ G + + A G+ Y+ PL+ +D N I +
Sbjct: 771 NGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCS--PLILHRDVKSNNILLD-- 826
Query: 271 DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKE 435
D+ V+DF LV A ++ +YGY+ P TLK E
Sbjct: 827 --------SDFEAHVADFGLAKFLVDGAASECMSSIADSYGYIAPEYAYTLKVDE 873
>gi|133290|sp|P28615|RP54_ALCEU RNA POLYMERASE SIGMA-54 FACTOR
>gi|477782|pir||B48362 transcription initiation factor
sigma 54 - Alcaligenes eutrophus >gi|38785|emb|CAA47287|
(X66793) sigma factor 54 [Ralstonia eutropha]
Length = 493
Score = 32.1 bits (71), Expect = 5.3
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 154 MLIGLAAVGGMTYIGSQSKFI-PLVFQQDGSGNTISMTRPDHIPEARVDDYRTAVSDFIT 330
++ LA G Y ++ F+ P VF + G G I+ PD +P R++D + +
Sbjct: 269 LIRSLAPYPGHAYSRPEADFVVPDVFVRKGGGGWIAQLNPDVMPRLRIND---MYAQILR 325
Query: 331 NIRLVTPDAGLQHKAVLKTYGYLVPN 408
+ + AGLQ K L+ +L+ N
Sbjct: 326 GAKGESGTAGLQQK--LQEARWLIKN 349
>gi|2160756 (U96879) CLV1 receptor kinase [Arabidopsis thaliana]
Length = 980
Score = 31.7 bits (70), Expect = 6.9
Identities = 27/115 (23%), Positives = 45/115 (38%)
Frame = +1
Query: 91 NSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRP 270
N +G+++ S+ G + + A G+ Y+ PL+ +D N I +
Sbjct: 771 NGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCS--PLILHRDVKSNNILLD-- 826
Query: 271 DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKE 435
D+ V+DF LV A ++ +YGY+ P TLK E
Sbjct: 827 --------SDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDE 873
>gi|2252830 (AF013293) weak similarity to receptor protein kinase
[Arabidopsis thaliana]
>gi|6049872|gb|AAF02787.1|AF195115_7 (AF195115) weak
similarity to receptor protein kinase [Arabidopsis
thaliana]
Length = 341
Score = 31.7 bits (70), Expect = 6.9
Identities = 17/52 (32%), Positives = 31/52 (58%)
Frame = +1
Query: 295 DDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKEYLNGT 450
DD + A ++F++ I+ + A + H +++K YG++V ND L + NGT
Sbjct: 69 DDRQGADAEFMSEIQTL---AQVTHLSLVKYYGFVVHNDEKILVVEYVANGT 117
>gi|2804429 (AF043695) similar to the protein phosphates 2c family
[Caenorhabditis elegans]
Length = 582
Score = 31.7 bits (70), Expect = 6.9
Identities = 37/143 (25%), Positives = 61/143 (41%), Gaps = 2/143 (1%)
Frame = -1
Query: 543 NLPSVFRLLENRFHIDVHHFIRSAVERISFFRTVQVFLCLERRRIVGYEIAIRFQHSF-- 370
N P V R+++ + + FI S +E+ + + FL EIA+ HS
Sbjct: 26 NPPKVGRVMDVSDGVFIGGFIPSLIEKQRYPYSRPEFLYFSEE-----EIALSSDHSVRP 80
Query: 369 VLQPCIWRHETNIRNEVGNGSAIIIYPSLGNVIRTCHRNCVATTVLLEHQGNEFRLTSDV 190
VL P R + VG AI + G ++ + VL +HQGNE
Sbjct: 81 VLCP---RFPHRMPLYVGYAEAI----NAGKTVQNEDQASAKMLVLTQHQGNEMN----- 128
Query: 189 GHTTDSSKTDQHTKQADEDTHLAML 115
G ++D K++ + ++E+ ML
Sbjct: 129 GFSSDEKKSETRKRNSNENDDDPML 153
>gi|6721118|gb|AAF26772.1|AC007396_21 (AC007396) T4O12.5 [Arabidopsis
thaliana]
Length = 978
Score = 31.7 bits (70), Expect = 6.9
Identities = 27/115 (23%), Positives = 45/115 (38%)
Frame = +1
Query: 91 NSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRP 270
N +G+++ S+ G + + A G+ Y+ PL+ +D N I +
Sbjct: 769 NGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCS--PLILHRDVKSNNILLD-- 824
Query: 271 DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKE 435
D+ V+DF LV A ++ +YGY+ P TLK E
Sbjct: 825 --------SDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDE 871
>gi|1652806|dbj|BAA17725| (D90908) isopenicillin N epimerase
[Synechocystis sp.]
Length = 401
Score = 31.7 bits (70), Expect = 6.9
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 7/62 (11%)
Frame = +1
Query: 370 KAVLKTYGYLVPNDPATLKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDT----- 534
+A+ YGYL N P ++ +Y+ + +A E NVD ++ T
Sbjct: 37 EAITAMYGYLQENGPFSIAANQYIQ--QLIAQLRQALGETFNVDPNTITITDNVTTGCDI 94
Query: 535 --WQIDWQE 555
W IDWQ+
Sbjct: 95 VLWGIDWQK 103
>gi|6434445|emb|CAB60910.1| (AL132896) predicted using Genefinder;
preliminary prediction [Caenorhabditis elegans]
Length = 1365
Score = 31.3 bits (69), Expect = 9.1
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 271 DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKEYLNGT 450
DH DDYR+ +FI N+++V+ H + + D ++
Sbjct: 383 DHEGRKYSDDYRSKGIEFINNVKIVS-----DHFTAFYNFTQTLDLDQLETDVAAFVESL 437
Query: 451 KETNPFNRAANEMVNVD-VKSVLQQSKDTWQIDWQETVRGRDGSLK 585
T+ NR +EM ++ VK++ + +I QE+V+G + K
Sbjct: 438 NFTDINNRTQSEMEVIEIVKNIRSNNISLTKI--QESVKGIENQFK 481
Database: nr
Posted date: Feb 20, 2000 12:20 AM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192651358
Number of Sequences: 457798
Number of extensions: 4308597
Number of successful extensions: 12497
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12482
Number of HSP's gapped (non-prelim): 14
length of query: 239
length of database: 140,871,481
effective HSP length: 54
effective length of query: 184
effective length of database: 116,150,389
effective search space: 21371671576
effective search space used: 21371671576
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)