BLASTP 2.0.10 [Aug-26-1999]
Query= XF-11A04-GL62
(368 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1707644|emb|CAA67866| (X99514) mexE [Pseudomonas aeruginosa] 66 5e-10
gi|2983278 (AE000702) acriflavin resistance protein AcrE [Aquif... 62 6e-09
gi|1399757 (U57969) membrane fusion protein MexC [Pseudomonas a... 57 2e-07
gi|3347916 (AF072887) putative membrane fusion protein AmrA [Bu... 57 3e-07
gi|1736780|dbj|BAA15928| (D90845) Membrane fusion protein MtrC ... 56 4e-07
gi|1788389 (AE000297) putative membrane protein [Escherichia coli] 56 4e-07
gi|3219976|sp|P76397|YEGM_ECOLI HYPOTHETICAL 44.5 KD PROTEIN IN... 56 4e-07
gi|2983757 (AE000735) cation efflux system (czcB-like) [Aquifex... 56 4e-07
gi|5764624|gb|AAD51344.1|AF173226_1 (AF173226) SmeA [Stenotroph... 55 1e-06
gi|1709008|sp|P52477|MEXA_PSEAE MULTIDRUG RESISTANCE PROTEIN ME... 52 6e-06
gi|6502951|gb|AAF14522.1|AF147719_2 (AF147719) putative membran... 52 6e-06
gi|5091480|gb|AAD39553.1| (AF031417) TtgA [Pseudomonas putida] 50 4e-05
gi|399000|sp|P31223|ACRA_ECOLI ACRIFLAVIN RESISTANCE PROTEIN A ... 49 5e-05
gi|2605916|gb|AAD12178| (AF029405) periplasmic linker protein [... 46 6e-04
gi|399428|sp|P24180|ACRE_ECOLI ACRIFLAVIN RESISTANCE PROTEIN E ... 45 0.001
gi|3868983|dbj|BAA34299| (AB015853) MexX [Pseudomonas aeruginosa] 43 0.003
gi|2961294|emb|CAA12354| (AJ225023) RagD [Bradyrhizobium japoni... 41 0.012
gi|586677|sp|P37636|YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN... 41 0.016
gi|3769483 (AF073776) MexG [Pseudomonas aeruginosa] 40 0.027
gi|2983555 (AE000721) putative protein [Aquifex aeolicus] 39 0.046
gi|1001690|dbj|BAA10427| (D64002) hypothetical protein [Synecho... 37 0.23
gi|95799|pir||S18536 envelope protein - Escherichia coli >gi|22... 35 0.90
gi|1742709|dbj|BAA15404| (D90807) Fusaric acid resistance prote... 34 1.5
gi|3183279|sp|P76185|YDHJ_ECOLI HYPOTHETICAL 33.0 KD PROTEIN IN... 34 1.5
gi|4206629 (AF067954) putative membrane fusion protein SilB [Sa... 34 1.5
gi|6458444|gb|AAF10314.1|AE001929_7 (AE001929) conserved hypoth... 34 2.6
gi|6714655|emb|CAB66177.1| (AL136500) putative TetR-family tran... 34 2.6
gi|1170699|sp|P30614|KPYK_YARLI PYRUVATE KINASE >gi|424047 (M86... 33 3.5
gi|101735|pir||JC1267 pyruvate kinase (EC 2.7.1.40) - yeast (Ya... 33 3.5
gi|2688026 (AE001125) membrane fusion protein (mtrC) [Borrelia ... 33 4.5
gi|3798624 (AF082100) FK506 polyketide synthase [Streptomyces s... 33 4.5
gi|586667|sp|P37626|YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN ... 32 7.8
gi|4972055|emb|CAB43923.1| (AL078470) putative protein [Arabido... 32 7.8
>gi|1707644|emb|CAA67866| (X99514) mexE [Pseudomonas aeruginosa]
Length = 414
Score = 66.0 bits (158), Expect = 5e-10
Identities = 87/358 (24%), Positives = 132/358 (36%), Gaps = 23/358 (6%)
Query: 16 LALTACGNNHAPDPRTEAPLVRVVAV-QGAFATSRSFTGVVAARVQSDLGFRVSGKVLKR 74
L L+ACG AP V V V + FTG + A +L RVSG + +
Sbjct: 19 LVLSACGKAPETTQGMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRV 78
Query: 75 FVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVS 134
G +VK+G L IDP N+ +R L A +S
Sbjct: 79 AFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAIS 138
Query: 135 TSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQ 194
D R LS+ + A DG V G +V++G+
Sbjct: 139 AELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGE 198
Query: 195 ----PVVRLAR------TGEREAIVYLP-------ETLRPAIGSLGQATLYGNPQAAVSA 237
P+V + ER + Y+ +T + LG ++ GNP
Sbjct: 199 TCSPPLVSTDKVYAYFDADERVFLKYVELARQAGRDTRSESPVYLGLSSEDGNPHL---G 255
Query: 238 RLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPG 297
RL L N + T T R V + A G V++++ S ++L D G
Sbjct: 256 RLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLG 315
Query: 298 KGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVRP 355
K V V+DG K V+R++++ + + V+ L GD++V G +R G V P
Sbjct: 316 K-KFVLVLDG-DNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQVDP 371
>gi|2983278 (AE000702) acriflavin resistance protein AcrE [Aquifex
aeolicus]
Length = 374
Score = 62.5 bits (149), Expect = 6e-09
Identities = 77/346 (22%), Positives = 132/346 (37%), Gaps = 27/346 (7%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSR---SFTGVVAARVQSDLGFRVSGKVLKRFVDTGQI 81
HA + + E V + V+ + G + A ++++ RV G V+ V G
Sbjct: 31 HAEEVKRETKTVSGLVVEPVKVVKEVPVEYPGTIVAGDRAEISTRVMGYVVDVKVKEGDF 90
Query: 82 VKRGQPLMSIDPID-------LGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVS 134
VK+GQ L IDP D + R++ L+ +G ++
Sbjct: 91 VKKGQTLFVIDPRDVKAQINIMKQRIAQAQKNYEAAKAHYEAVKKTYERFKKLLKEGAIT 150
Query: 135 TSAYDQIXXXXXXXXXXXXXXXXXXXXXRNT-------LSYAILLADADGVVVETLAEPG 187
+DQ+ R LSYA + A DG V++ + + G
Sbjct: 151 QHEFDQVEAQYLAAKAKLQAAKAEIRVAREAYNSAKAQLSYAEVKAPFDGYVIQKMVDRG 210
Query: 188 QVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAV-SARLRVLSNAA 246
+ + G P+ L T + V PE I +Y V A++ + A
Sbjct: 211 DIANPGMPLAVL-ETRPYKVEVSFPEKYFGEINIGDTLEVYVEKLGRVFPAKVVEVEPAV 269
Query: 247 DRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVI- 305
D V+RT++ + +++ + G VKV + E + L +P A++ GVWV+
Sbjct: 270 DPVSRTFKVKALIDDN--NVKSGLFVKVFKLEKIEEPTVL-IPEKAIYKRWDFTGVWVVK 326
Query: 306 -DGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREG 350
DG + R + LG + +V L G+++V G EG
Sbjct: 327 PDGTLQLRLIRLGRKLG---NYYEVLAGLSPGERIVVEGIERACEG 369
>gi|1399757 (U57969) membrane fusion protein MexC [Pseudomonas
aeruginosa]
Length = 387
Score = 57.4 bits (136), Expect = 2e-07
Identities = 83/372 (22%), Positives = 136/372 (36%), Gaps = 27/372 (7%)
Query: 10 RIYLLPLALTACGNNHAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQ----SDLGF 65
RI L +A+ G A + + A +V V V A + + + R++ +++
Sbjct: 9 RIGALAMAIALAGCGPAEERQEAAEMVLPVEVLTVQAEPLALSSELPGRIEPVRVAEVRA 68
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYR 125
RV+G V+++ + G VK G L IDP L RRY
Sbjct: 69 RVAGIVVRKRFEEGADVKAGDLLFQIDPAPLKAAVSRAEGELARNRAVLFEAQARVRRYE 128
Query: 126 DLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAE 185
LV VS +D R L YA + A G + L
Sbjct: 129 PLVKIQAVSQQDFDTATADLRSAEAATRSAQADLETARLNLGYASVTAPISGRIGRALVT 188
Query: 186 PGQVVSAGQPVVRLARTGEREAI-VYLPETLRPAI---GSLGQATLYGNPQAAVSAR--- 238
G +V G+ + +AR + + I +T A+ +L + TL A++ R
Sbjct: 189 EGALVGQGEATL-MARIQQLDPIYADFTQTAAEALRLRDALKKGTLAAGDSQALTLRVEG 247
Query: 239 --------LRVLSNAADRVTRTYEARYVL---EGALLHAPLGATVKVEIPDSTESISSLQ 287
L+ A DR T R +G LL G V+V P ++ ++
Sbjct: 248 TPYERQGALQFADVAVDRGTGQIALRGKFANPDGVLLP---GMYVRVRTPQGIDN-QAIL 303
Query: 288 VPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 347
VP A+ G ++ G +A RS+ + Q+ L+ GD+V+ G +
Sbjct: 304 VPQRAVHRSSDGSAQVMVVGADERAESRSVGTGVMQGSRWQITEGLEPGDRVIVGGLAAV 363
Query: 348 REGEIVRPIGQG 359
+ G + P G
Sbjct: 364 QPGVKIVPKPDG 375
>gi|3347916 (AF072887) putative membrane fusion protein AmrA
[Burkholderia pseudomallei]
Length = 399
Score = 56.6 bits (134), Expect = 3e-07
Identities = 85/369 (23%), Positives = 130/369 (35%), Gaps = 40/369 (10%)
Query: 21 CGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTG 79
CG + + VV V+ + S G + A Q+++ RV+G V R + G
Sbjct: 25 CGKHESEHDAAAPREASVVTVKKTSVPLSVELPGRLDAYRQAEVRARVAGIVTARTYEEG 84
Query: 80 QIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYD 139
Q VKRG L IDP + RRY +LV VS +
Sbjct: 85 QEVKRGAVLFRIDPAPFKAARDAAAGALEKAQAAHLAALDKRRRYDELVRDRAVSERDHT 144
Query: 140 QIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRL 199
+ + L YA + A DG L G +V GQ
Sbjct: 145 EALADERQAKAAVASARAELARAQLQLDYATVTAPIDGRARRALVTEGALV--GQDQATP 202
Query: 200 ARTGEREAIVYL--------PETLRPAIGSLGQATLYGNPQAAVS------------ARL 239
T E+ +Y+ E+LR A+ S G+A V+ +L
Sbjct: 203 LTTVEQLDPIYVNFSQPAADVESLRRAVKS-GRAAGIAQQDVEVTLVRPDGSTYARKGKL 261
Query: 240 RVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKG 299
A D T T R + GA V++ + D + ++ VP AL
Sbjct: 262 LFADLAVDPSTDTVAMRALFPNPERELLPGAYVRIAL-DRAVARDAILVPRDAL------ 314
Query: 300 PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKG-------NLKVGDQVVSLGAHLLREGEI 352
+ D K V ++ K+ +T + AQ+KG L G++VV + A G
Sbjct: 315 --LRTADSATVKVVGQNGKIRDVTVEAAQMKGRDWIVTRGLAGGERVVVVDAAQFEAGTT 372
Query: 353 VRPIGQGEA 361
V+ + +G A
Sbjct: 373 VKALERGAA 381
>gi|1736780|dbj|BAA15928| (D90845) Membrane fusion protein MtrC
precursor. [Escherichia coli]
Length = 455
Score = 56.2 bits (133), Expect = 4e-07
Identities = 75/340 (22%), Positives = 123/340 (36%), Gaps = 24/340 (7%)
Query: 33 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 92
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 100 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 159
Query: 93 PIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXX 152
P + D RY+ L +VS D
Sbjct: 160 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 219
Query: 153 XXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 210
+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 220 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 279
Query: 211 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 257
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 280 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 336
Query: 258 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 317
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 337 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 391
Query: 318 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 356
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 392 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 431
>gi|1788389 (AE000297) putative membrane protein [Escherichia coli]
Length = 464
Score = 56.2 bits (133), Expect = 4e-07
Identities = 75/340 (22%), Positives = 123/340 (36%), Gaps = 24/340 (7%)
Query: 33 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 92
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 109 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 168
Query: 93 PIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXX 152
P + D RY+ L +VS D
Sbjct: 169 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 228
Query: 153 XXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 210
+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 229 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 288
Query: 211 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 257
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 289 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 345
Query: 258 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 317
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 346 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 400
Query: 318 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 356
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 401 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 440
>gi|3219976|sp|P76397|YEGM_ECOLI HYPOTHETICAL 44.5 KD PROTEIN IN
ALKA-BAES INTERGENIC REGION PRECURSOR
Length = 415
Score = 56.2 bits (133), Expect = 4e-07
Identities = 75/340 (22%), Positives = 123/340 (36%), Gaps = 24/340 (7%)
Query: 33 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 92
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 60 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 119
Query: 93 PIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXX 152
P + D RY+ L +VS D
Sbjct: 120 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 179
Query: 153 XXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 210
+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 180 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 239
Query: 211 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 257
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 240 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 296
Query: 258 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 317
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 297 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 351
Query: 318 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 356
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 352 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 391
>gi|2983757 (AE000735) cation efflux system (czcB-like) [Aquifex
aeolicus]
Length = 348
Score = 56.2 bits (133), Expect = 4e-07
Identities = 69/347 (19%), Positives = 127/347 (35%), Gaps = 7/347 (2%)
Query: 5 QLASYRIYLLPLALTACGNNHAPDPRTEAPLVRVVAVQGA-FATSRSFTGVVAARVQSDL 63
Q Y ++LL L + P+ V VV V+ S F GV+ A +++L
Sbjct: 2 QTLLYILFLLFL-FSCSKTEEKKTPQARKIQVSVVEVKREKVVVSVPFKGVLKAVKEAEL 60
Query: 64 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERR 123
+ G + + + G+ VK+G+ L ++ R
Sbjct: 61 SSQEPGVLTRLYKREGEYVKKGEVLAQVESNLAKESYRKVLNQLKEVEKQVELQKKIYER 120
Query: 124 YRDLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETL 183
+ L + ++S Y++ + + + A DG + E
Sbjct: 121 RKKLFERELISKEEYEREKYKLEELIQRKKALESELKYFKEKVRRHYVRAPFDGYITERY 180
Query: 184 AEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLS 243
G V+ PV RL GE E +P + + + V R+ +S
Sbjct: 181 KNMGDYVTPQTPVFRLINLGELEFSFKVPARYVSLLKKGKELNVELENGKNVKGRVYFIS 240
Query: 244 NAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVW 303
D + + ++ G E+P + + +VP A+ G +W
Sbjct: 241 ERGDE-NNQFLVKLLINNEEGKLKAGTFGFAEVP--VREVYAFKVPEDAVILQGNKKIIW 297
Query: 304 VIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREG 350
V++G ++ R ++V+ + A V+G+LK GD+VV+ LL+EG
Sbjct: 298 VLEGNRVRS--REVEVIFINGGYAYVEGDLKDGDKVVTENTFLLKEG 342
>gi|5764624|gb|AAD51344.1|AF173226_1 (AF173226) SmeA
[Stenotrophomonas maltophilia]
Length = 398
Score = 54.7 bits (129), Expect = 1e-06
Identities = 90/384 (23%), Positives = 140/384 (36%), Gaps = 40/384 (10%)
Query: 8 SYRIYLLPL--ALTACGNNHAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQ----S 61
S R LLPL AL AC + RT+AP + V V A A + + R S
Sbjct: 10 SPRPLLLPLLLALAACSAD-----RTDAPAMPEVGVIIASAQPLALQQTLPGRAVPFEIS 64
Query: 62 DLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDE 121
++ ++ G + +R GQ VK GQ L +DP
Sbjct: 65 EVRPQIGGLIRQRLFTEGQQVKAGQLLYQVDPAPYQAAFDTARGQLAQAEATVLSAQPKA 124
Query: 122 RRYRDLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVE 181
R R LV+ S D R L Y + A DG +
Sbjct: 125 ERTRALVSMDAASKQDADDATSALKQAQANVIAARAALQAARINLDYTRVTAPIDGRIGT 184
Query: 182 TLAEPGQVVSAGQPVVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQA 233
+ G +V+AGQ T +R VYL T LR + + + G Q
Sbjct: 185 SSVTAGALVAAGQDTA--LTTIQRLDPVYLDVTQSSTQMLALRKRLDAGLVKAIDGKAQV 242
Query: 234 AV----------SARLRVLSNAADRVTRTYEARYVL---EGALLHAPLGATVKVEIPDST 280
V L + +A D T + R V+ +G LL G +K +P +T
Sbjct: 243 KVLLEDGSTYAHEGTLEFVGSAVDPGTGNVKLRAVIPNPDGLLLP---GMYLKAVLPMAT 299
Query: 281 ESISSLQVPIGALFDPGKG-PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQV 339
++ +L VP A+ +G P + ++D K V R + + + Q+ LK G++V
Sbjct: 300 DA-RALLVPQKAVVRNERGEPLLRLLDAKD-HVVERRVSTGQVVGNQWQITSGLKAGERV 357
Query: 340 VSLGAHLLREGEIVRPIGQGEAMV 363
+ + G+ V+ + A +
Sbjct: 358 IVSNGSAVSLGQQVKAVAPTTAQL 381
>gi|1709008|sp|P52477|MEXA_PSEAE MULTIDRUG RESISTANCE PROTEIN MEXA
PRECURSOR >gi|481839|pir||S39629 hypothetical protein A
- Pseudomonas aeruginosa >gi|438853 (L11616) envC
homologue; ORFA [Pseudomonas aeruginosa]
Length = 383
Score = 52.3 bits (123), Expect = 6e-06
Identities = 84/369 (22%), Positives = 129/369 (34%), Gaps = 56/369 (15%)
Query: 17 ALTACGNNHAPDPRTEAPLVRVVAVQGAFAT-SRSFTGVVAARVQSDLGFRVSGKVLKRF 75
AL+ CG + AP P + P V +V ++ T + G A +++ +V+G +LKR
Sbjct: 20 ALSGCGKSEAPPP-AQTPEVGIVTLEAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRL 78
Query: 76 VDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVST 135
G VK GQ L IDP +RY+ LVA VS
Sbjct: 79 FKEGSDVKAGQQLYQIDP-------ATYEADYQSAQANLASTQEQAQRYKLLVADQAVSK 131
Query: 136 SAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQP 195
Y R L Y +L+ G + + G +V+ GQ
Sbjct: 132 QQY-------ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQ- 183
Query: 196 VVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQAAVS----------- 236
T ++ +Y+ T LR + S GQ G+ A VS
Sbjct: 184 -ANAMATVQQLDPIYVDVTQPSTALLRLRRELAS-GQLERAGDNAAKVSLKLEDGSQYPL 241
Query: 237 -ARLRVLSNAADRVTRTYEARYV--------LEGALLHAPLGATVKVEIPDSTESISSLQ 287
RL + D T + R V L G +HA L VK + ++
Sbjct: 242 EGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQLQEGVKQK---------AIL 292
Query: 288 VPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 347
P + KG ++ K R IK + D V L GD++++ G +
Sbjct: 293 APQQGVTRDLKGQATALVVNAQNKVELRVIKADRVIGDKWLVTEGLNAGDKIITEGLQFV 352
Query: 348 REGEIVRPI 356
+ G V+ +
Sbjct: 353 QPGVEVKTV 361
>gi|6502951|gb|AAF14522.1|AF147719_2 (AF147719) putative membrane
fusion protein; AmrA [Pseudomonas aeruginosa]
Length = 396
Score = 52.3 bits (123), Expect = 6e-06
Identities = 43/185 (23%), Positives = 62/185 (33%), Gaps = 2/185 (1%)
Query: 13 LLPLALTACGNNHAPDPRTEAP--LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGK 70
L+ L L C EAP + +VA + G + A Q+++ RV+G
Sbjct: 16 LVALFLLGCEEAADAGKTAEAPAEVGVIVARPAPIGITSELPGRLEAYRQAEVRARVAGI 75
Query: 71 VLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAK 130
V +R + GQ V+ G L IDP L + +RY DL+
Sbjct: 76 VTRRLYEEGQDVRAGTVLFQIDPAPLKAALDISRGALARAEASHAAAADKLKRYADLIKD 135
Query: 131 GVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVV 190
+S Y + R L YA + A DG L G +V
Sbjct: 136 RAISEREYTEAQTDARQALAQIASAKAELEQARLRLGYATVTAPIDGRARRALVTEGALV 195
Query: 191 SAGQP 195
P
Sbjct: 196 GEDSP 200
>gi|5091480|gb|AAD39553.1| (AF031417) TtgA [Pseudomonas putida]
Length = 384
Score = 49.6 bits (116), Expect = 4e-05
Identities = 84/370 (22%), Positives = 130/370 (34%), Gaps = 56/370 (15%)
Query: 14 LPLALTACGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRVSGKVL 72
L L+ C A P +AP V VV +Q AF + G +A +++ +V+G +L
Sbjct: 16 LATLLSGCKKEEAA-PAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIIL 74
Query: 73 KRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGV 132
KR G VK GQ L IDP + RY+ L+ +
Sbjct: 75 KRLFKEGSEVKEGQQLYQIDP-------AVYEATLANAKANLLATRSLAERYKQLIDEQA 127
Query: 133 VSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSA 192
VS YD + L Y +LA G + + G +VS
Sbjct: 128 VSKQEYDD-------ANAKRLQAEASLKSAQIDLRYTKVLAPISGRIGRSSFTEGALVSN 180
Query: 193 GQPVVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQAAV--------- 235
GQ T ++ +Y+ T LR + S GQ GN A+V
Sbjct: 181 GQ--TDAMATIQQLDPIYVDVTQSTAELLKLRRDLES-GQLQKAGNNAASVQLVLEDGSL 237
Query: 236 ---SARLRVLSNAADRVTRTYEAR--------YVLEGALLHAPLGATVKVEIPDSTESIS 284
RL A D T + R +L G +HA L A V + +
Sbjct: 238 FKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGV---------NAN 288
Query: 285 SLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGA 344
++ P + KG ++ + K R +K ++ L GD++++ G
Sbjct: 289 AILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGL 348
Query: 345 HLLREGEIVR 354
+R G V+
Sbjct: 349 QYVRPGVEVK 358
>gi|399000|sp|P31223|ACRA_ECOLI ACRIFLAVIN RESISTANCE PROTEIN A
PRECURSOR >gi|625730|pir||A36938 lipoprotein acrA
precursor - Escherichia coli >gi|290405 (M94248)
acriflavine resistance protein [Escherichia coli]
>gi|532310 (U00734) 42 kDa protein [Escherichia coli]
>gi|1773145 (U82664) lipoprotein AcrA precursor
[Escherichia coli] >gi|1786668 (AE000152) acridine
efflux pump [Escherichia coli]
Length = 397
Score = 49.2 bits (115), Expect = 5e-05
Identities = 77/361 (21%), Positives = 120/361 (32%), Gaps = 28/361 (7%)
Query: 16 LALTACGNNHAPDPRTEAPLVRVVAVQGA-FATSRSFTGVVAARVQSDLGFRVSGKVLKR 74
LALT C + A + P V VV V+ + G +A +++ +VSG +LKR
Sbjct: 20 LALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKR 79
Query: 75 FVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVS 134
G ++ G L IDP RY+ L+ +S
Sbjct: 80 NFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYIS 139
Query: 135 TSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQ 194
YDQ R L+Y + + G + ++ G +V GQ
Sbjct: 140 KQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQ 199
Query: 195 PVVRLARTGEREAIV---------YLPETLRPAIGSLGQATLYGNPQAAVS--------- 236
LA + + I +L A G+L Q N +A VS
Sbjct: 200 -ATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQE----NGKAKVSLITSDGIKF 254
Query: 237 ---ARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGAL 293
L D+ T + R + G V+ + + +++ VP +
Sbjct: 255 PQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNP-NAILVPQQGV 313
Query: 294 FDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIV 353
+G ++ G K R I D V LK GD+VV G +R G V
Sbjct: 314 TRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQV 373
Query: 354 R 354
+
Sbjct: 374 K 374
>gi|2605916|gb|AAD12178| (AF029405) periplasmic linker protein
[Pseudomonas putida]
Length = 382
Score = 45.7 bits (106), Expect = 6e-04
Identities = 82/385 (21%), Positives = 136/385 (35%), Gaps = 56/385 (14%)
Query: 4 RQLASYR-IYLLPLA----LTACGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAA 57
RQ+ S R + ++PL ++ CG T P V V V+ A + G +A
Sbjct: 2 RQIRSPRALRVIPLTALMLISGCGEKEQVSSATPPPDVGVYTVRAQALTLTTDLPGRTSA 61
Query: 58 RVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXX 117
+++ +VSG + KR G VK GQ L IDP
Sbjct: 62 FRVAEVRPQVSGILQKRSFVEGAEVKLGQQLYQIDP-------RTYEAQLRRAEANRTSA 114
Query: 118 XNDERRYRDLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADG 177
N RRY L+ VS YD R + Y +L+ G
Sbjct: 115 QNLARRYETLLKTKAVSKQQYDD-------ALAAWKQAEADYQVARIDVQYTRVLSPISG 167
Query: 178 VVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSA 237
+ + G +V+ GQ LA + + I + +P L G +A S
Sbjct: 168 RIGRSTVTEGALVTNGQ-AQSLATVTQLDPIYV--DVTQPI------TKLLGLQKALESG 218
Query: 238 RLRVLSNAADRVTRTYE--ARYVLEGALLHAPL-------GATVKVEIPDSTESI----- 283
RL+ V+ T + + Y L G L + + T++ E P+ +
Sbjct: 219 RLQKTGENQAEVSLTLDDGSAYPLPGTLKFSEVSVDPTTGSVTLRAEFPNPNRKLLPGMF 278
Query: 284 -----------SSLQVPIGALFDPGKG-PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKG 331
+++ VP A+ +G P VWV+ R I+ L + +
Sbjct: 279 VHALLKEGVQNAAILVPQQAISRDTRGVPSVWVVKADNT-VESREIQTLRTVGNAWLISN 337
Query: 332 NLKVGDQVVSLGAHLLREGEIVRPI 356
+ G+++++ G +R G V +
Sbjct: 338 GVTEGERIITEGVQRVRSGIAVNAV 362
>gi|399428|sp|P24180|ACRE_ECOLI ACRIFLAVIN RESISTANCE PROTEIN E
PRECURSOR (ENVC PROTEIN) >gi|290408 (M96848) acriflavine
resistance protein [Escherichia coli]
>gi|510829|emb|CAA41016| (X57948) envelope protein
[Escherichia coli] >gi|606206|gb|AAA58069.1| (U18997)
alternate name envC [Escherichia coli] >gi|1789665
(AE000405) transmembrane protein affects septum
formation and cell membrane permeability [Escherichia
coli]
Length = 385
Score = 44.9 bits (104), Expect = 0.001
Identities = 69/348 (19%), Positives = 116/348 (32%), Gaps = 25/348 (7%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
H +P+ +V+ ++ G A +++ +VSG VL R G V+
Sbjct: 33 HVGEPQVTVHIVKTAPLE----VKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQA 88
Query: 85 GQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXX 144
GQ L IDP +RY LV +S YDQ
Sbjct: 89 GQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIAD 148
Query: 145 XXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGE 204
R L+Y + A G + ++ G +V+ GQ LA +
Sbjct: 149 ARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQ-TTELATVQQ 207
Query: 205 REAIVYLPET--------LRPAI--GSLGQATLYGNPQAA--------VSARLRVLSNAA 246
+ I Y+ T L+ ++ G+L + N + + L+
Sbjct: 208 LDPI-YVDVTQSSNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTV 266
Query: 247 DRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVID 306
D T + R V G V+ I + + ++ +P + +G +I
Sbjct: 267 DESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQP-DAILIPQQGVSRTPRGDATVLIV 325
Query: 307 GKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVR 354
++ R + D + LK GDQV+ G R GE V+
Sbjct: 326 NDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVK 373
>gi|3868983|dbj|BAA34299| (AB015853) MexX [Pseudomonas aeruginosa]
Length = 389
Score = 43.4 bits (100), Expect = 0.003
Identities = 42/185 (22%), Positives = 61/185 (32%), Gaps = 3/185 (1%)
Query: 13 LLPLALTACGNNHAPDPRTEAP--LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGK 70
L+ L L C EAP + +VA + G + A Q+++ RV+G
Sbjct: 12 LVALFLLGCEEAADAGKTAEAPAEVGVIVARPAPIGITSELPGRLEAYRQAEVRARVAGI 71
Query: 71 VLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAK 130
V +R + GQ V+ G L IDP L + + Y DL+
Sbjct: 72 VTRRLYEEGQDVRAGTVLFQIDPAPL-KAALDISRGALPGRGQPRAAADKLKAYADLIKD 130
Query: 131 GVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVV 190
+S Y + R L YA + A DG L G +V
Sbjct: 131 RAISEREYTEAQTDARQALAQIASAKAELEQARLRLGYATVTAPIDGRARRALVTEGALV 190
Query: 191 SAGQP 195
P
Sbjct: 191 GEDSP 195
>gi|2961294|emb|CAA12354| (AJ225023) RagD [Bradyrhizobium japonicum]
Length = 423
Score = 41.4 bits (95), Expect = 0.012
Identities = 75/349 (21%), Positives = 124/349 (35%), Gaps = 27/349 (7%)
Query: 26 APDPRTEAPLVRVVAVQGAFATSR-SFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
A RT P VRV VQ + + + A +++ R SG + KR+VD G VK+
Sbjct: 73 AEQVRTNVPEVRVATVQASGDLMKVTLPATTTAFEAANIFARTSGYIEKRYVDIGDRVKK 132
Query: 85 GQPLMSI--DPIDLGLXXXXXXXXXXXXXXXXXXXXND-----ERRYRDLVAKGVVSTSA 137
G L+ I +D + + R +LV +G ++
Sbjct: 133 GDLLVEITAPELDQQIAQAQATLAQDQAALQQAQASRELADVTNSRDSNLVKQGWLTAQQ 192
Query: 138 YDQIXXXXXXXXXXXXXXXXXXXXXRNTL-------SYAILLADADGVVVETLAEPGQVV 190
D + SY ++A DGVV + + G +V
Sbjct: 193 GDNDRLTLRAQQGAVGVAQSNIAAQEAQIRVLQQEKSYQRVVAPFDGVVTQRNVDNGSLV 252
Query: 191 SAGQP-VVRLARTGEREAIVYLPET----LRPAIGS-LGQATLYGNPQAAVSARLRVLSN 244
AG + + + V++P+ + P + S + + G A R+
Sbjct: 253 QAGSTFMFTMMHSNVIRTQVFVPQDEAFGVAPGVDSDIRVPEIPGRTFAGKVTRIATALQ 312
Query: 245 AADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWV 304
R T E LL + TV++ IP T S + +P AL G V V
Sbjct: 313 PGSRTLLT-EIDVPNPDGLLSPGIYCTVELSIPRRTPSTT---IPSDALVFDQNGLHVAV 368
Query: 305 IDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIV 353
+ + ++ + + +V+ ++ GDQVV A L EG V
Sbjct: 369 V--RNGTVHFQQVSISRDFGTTVEVRDGVQPGDQVVLNPAVNLAEGSKV 415
>gi|586677|sp|P37636|YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN IN
HDED-GADA INTERGENIC REGION PRECURSOR
>gi|1073514|pir||S47733 hypothetical protein o385 -
Escherichia coli >gi|466650 (U00039) No definition line
found [Escherichia coli] >gi|1789929 (AE000427) putative
membrane protein [Escherichia coli]
Length = 385
Score = 41.0 bits (94), Expect = 0.016
Identities = 80/389 (20%), Positives = 129/389 (32%), Gaps = 55/389 (14%)
Query: 10 RIYLLPLA-----LTACGNNHAPDPRTEAPLVRVVAVQ-GAFATSRSFTGVVAARVQSDL 63
R L+PL LTAC + A + P V VV + G+ G +++
Sbjct: 5 RKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEI 64
Query: 64 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERR 123
+V G ++KR G V +G L IDP L R
Sbjct: 65 RPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNR 124
Query: 124 YRDLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETL 183
L+ VS YD L YA + + GV ++
Sbjct: 125 QASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSS 184
Query: 184 AEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLS 243
G +V+A Q +++V + + L P L Q+ Q + + V S
Sbjct: 185 VTVGALVTANQ----------ADSLVTV-QRLDPIYVDLTQSV-----QDFLRMKEEVAS 228
Query: 244 NAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVP-------------- 289
+V + + LE ++ G T+K P E+ S+ +
Sbjct: 229 GQIKQVQGSTPVQLNLENGKRYSQTG-TLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGM 287
Query: 290 -IGALFDPGKGPGVWVI--DGKPAKAVWRSIKVLGLTDDVAQ---------------VKG 331
+ AL D G V ++ +G A ++ ++ DDV Q V
Sbjct: 288 YVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTS 347
Query: 332 NLKVGDQVVSLGAHLLREGEIVRPIGQGE 360
L+ GD+V+ G +R G R I +
Sbjct: 348 GLQAGDRVIVSGLQRIRPGIKARAISSSQ 376
>gi|3769483 (AF073776) MexG [Pseudomonas aeruginosa]
Length = 396
Score = 40.2 bits (92), Expect = 0.027
Identities = 39/185 (21%), Positives = 59/185 (31%), Gaps = 2/185 (1%)
Query: 13 LLPLALTACGNNHAPDPRTEAP--LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGK 70
L+ L L C EAP + +VA + G + A Q+++ RV+G
Sbjct: 16 LVALFLLGCEEAADAGKTAEAPAEVGVIVARPAPIGITSELPGRLEAYRQAEVRARVAGI 75
Query: 71 VLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAK 130
V +R + GQ V+ G L +DP L +RY +L+
Sbjct: 76 VTRRLYEEGQDVRAGTVLFQMDPCALKAALDISRGALARAEGNQPAAAEKFKRYAELIQD 135
Query: 131 GVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAEPGQVV 190
+S Y + YA + A DG L G +V
Sbjct: 136 RAISEREYTEAQTDARQPLAQIASGQGRTGAGPPAPWYATVTAPIDGRARRALVTEGALV 195
Query: 191 SAGQP 195
P
Sbjct: 196 GEDSP 200
>gi|2983555 (AE000721) putative protein [Aquifex aeolicus]
Length = 374
Score = 39.5 bits (90), Expect = 0.046
Identities = 20/39 (51%), Positives = 25/39 (63%)
Query: 55 VAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDP 93
V A S L FRVSGKV++ + D G VKRG+ L +DP
Sbjct: 39 VKADELSYLSFRVSGKVIEVYKDLGDYVKRGEALAKLDP 77
>gi|1001690|dbj|BAA10427| (D64002) hypothetical protein
[Synechocystis sp.]
Length = 501
Score = 37.1 bits (84), Expect = 0.23
Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 7/84 (8%)
Query: 14 LPLALTACGNNHAPDPRTEAPLVRVVAVQ----GAFATSRSFTGVVAARVQSDLGFRVSG 69
L L TACG + P AP V +Q + S F G + A +L ++ G
Sbjct: 17 LALLNTACGGDK---PGANAPRAIPVQLQTLEPSSVVDSNEFVGNLVATNFVELAPKIDG 73
Query: 70 KVLKRFVDTGQIVKRGQPLMSIDP 93
++L+ + GQ V G P++ ++P
Sbjct: 74 RILRIYAQWGQQVNEGDPILLLEP 97
>gi|95799|pir||S18536 envelope protein - Escherichia coli
>gi|228462|prf||1804337A envC gene [Escherichia coli]
Length = 384
Score = 35.2 bits (79), Expect = 0.90
Identities = 32/153 (20%), Positives = 47/153 (29%), Gaps = 4/153 (2%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
H +P+ +V+ ++ G A +++ +VSG VL R G V+
Sbjct: 33 HVGEPQVTVHIVKTAPLE----VKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQA 88
Query: 85 GQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYRDLVAKGVVSTSAYDQIXXX 144
GQ L IDP +RY LV +S YDQ
Sbjct: 89 GQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIAD 148
Query: 145 XXXXXXXXXXXXXXXXXXRNTLSYAILLADADG 177
R L+Y + A G
Sbjct: 149 ARQADAAVIAAKATVESARINLAYTKVTAPISG 181
>gi|1742709|dbj|BAA15404| (D90807) Fusaric acid resistance protein
FusE. [Escherichia coli]
Length = 329
Score = 34.4 bits (77), Expect = 1.5
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 3/167 (1%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYR 125
+VSG++++ + Q+V G L++ID + N+ R R
Sbjct: 50 QVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRR 109
Query: 126 DLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAE 185
L ++ +S D + L+ + A G V
Sbjct: 110 HL-SQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTR 168
Query: 186 PGQVVSAGQPVVRLARTGEREAIVYLPETLRPAI--GSLGQATLYGN 230
G G+P+ L + I Y ET I G+ Q TLY +
Sbjct: 169 IGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSD 215
>gi|3183279|sp|P76185|YDHJ_ECOLI HYPOTHETICAL 33.0 KD PROTEIN IN
SLYA-SODC INTERGENIC REGION >gi|1787932 (AE000259)
putative membrane protein [Escherichia coli]
Length = 299
Score = 34.4 bits (77), Expect = 1.5
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 3/167 (1%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLXXXXXXXXXXXXXXXXXXXXNDERRYR 125
+VSG++++ + Q+V G L++ID + N+ R R
Sbjct: 64 QVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRR 123
Query: 126 DLVAKGVVSTSAYDQIXXXXXXXXXXXXXXXXXXXXXRNTLSYAILLADADGVVVETLAE 185
L ++ +S D + L+ + A G V
Sbjct: 124 HL-SQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTR 182
Query: 186 PGQVVSAGQPVVRLARTGEREAIVYLPETLRPAI--GSLGQATLYGN 230
G G+P+ L + I Y ET I G+ Q TLY +
Sbjct: 183 IGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSD 229
>gi|4206629 (AF067954) putative membrane fusion protein SilB
[Salmonella typhimurium]
Length = 430
Score = 34.4 bits (77), Expect = 1.5
Identities = 41/179 (22%), Positives = 72/179 (39%), Gaps = 9/179 (5%)
Query: 173 ADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQ--ATLYGN 230
A DGV+ G +S + V ++ +PE++ + Q ++
Sbjct: 220 APIDGVITAFDLRTGMNISKDKVVAQIQGMDPVWISAAVPESIAYLLKDTSQFEISVPAY 279
Query: 231 PQAAVSARLRVLSNAADRVTRTYEARYVL--EGALLHAPLGATVKVEIPDSTESISSLQV 288
P + + D+ TRT + R + + L + A +K+ +T+S L +
Sbjct: 280 PDKTFHVEKWNILPSVDQTTRTLQVRLQVTNKDEFLKPGMNAYLKL----NTQSQEMLLI 335
Query: 289 PIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 347
P A+ D GK V +D + K V + I VL + + + L GD VV G L+
Sbjct: 336 PSQAVIDTGKEQRVITVDDE-GKFVPKQIHVLHESQQQSGIGSGLNEGDTVVVSGLFLI 393
>gi|6458444|gb|AAF10314.1|AE001929_7 (AE001929) conserved
hypothetical protein [Deinococcus radiodurans]
Length = 387
Score = 33.6 bits (75), Expect = 2.6
Identities = 47/177 (26%), Positives = 70/177 (38%), Gaps = 10/177 (5%)
Query: 166 LSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQA 225
LS + A G V + L E G+ G PV+RL G A V +P A+ +
Sbjct: 205 LSRTAVRAPFAGTVADVLTEVGEFAGQGTPVIRLVDPGSVRARVGVPTADAAALTEGVKF 264
Query: 226 TL-YGNPQAAVSARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESIS 284
L YG + V S+ R +EG P+GA + + S
Sbjct: 265 NLSYGGKSYVATV---VDSSGIAGKDRLVPITATIEGGNA-LPVGAAARASYRATLG--S 318
Query: 285 SLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVS 341
L +P AL G V+V + KA ++V+ + + V G L+ GD V+S
Sbjct: 319 GLLIPASALQVEGGENAVYV--ARSGKAEREVVQVVAESGNRVVVSG-LQDGDAVIS 372
>gi|6714655|emb|CAB66177.1| (AL136500) putative TetR-family
transcriptional regulator. [Streptomyces coelicolor
A3(2)]
Length = 192
Score = 33.6 bits (75), Expect = 2.6
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 176 DGVVVETLAEPGQVVSAGQPVVRLARTGEREAI--VYLPETLRPAIGSLGQATLYGNPQA 233
D V LAE + QPV+ G+RE I V L A+ P+A
Sbjct: 32 DAVTTRRLAER---IEYSQPVLYSHFRGKREIIGAVALQGATEMAVAMRAATAAADGPRA 88
Query: 234 AVSARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDS-TESISSLQVPIGA 292
V A R A+R Y+A + L+G L +A + + P+ ++ ++L +G
Sbjct: 89 RVHALARAYLAFAERNPAVYDAIFQLDGGLAYA------REDTPEPLKDAFAALLESLGE 142
Query: 293 LFDPGKGPGVW 303
+ G PG++
Sbjct: 143 VAGDGVEPGLF 153
>gi|1170699|sp|P30614|KPYK_YARLI PYRUVATE KINASE >gi|424047 (M86863)
pyruvate kinase [Yarrowia lipolytica]
Length = 542
Score = 33.2 bits (74), Expect = 3.5
Identities = 23/97 (23%), Positives = 43/97 (43%), Gaps = 2/97 (2%)
Query: 192 AGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTR 251
AG+PV+ T +++ Y P R + +G A L G +S + + V
Sbjct: 301 AGKPVI--CATQMLDSMTYNPRPTRAEVSDVGNAVLDGADCVMLSGETAKGTYPIESVKM 358
Query: 252 TYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQV 288
+E V E A+ +APL ++ TE++ ++ +
Sbjct: 359 MHETCLVAEKAIAYAPLFNEMRTLTVRPTETVETIAI 395
>gi|101735|pir||JC1267 pyruvate kinase (EC 2.7.1.40) - yeast
(Yarrowia lipolytica)
Length = 527
Score = 33.2 bits (74), Expect = 3.5
Identities = 23/97 (23%), Positives = 43/97 (43%), Gaps = 2/97 (2%)
Query: 192 AGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTR 251
AG+PV+ T +++ Y P R + +G A L G +S + + V
Sbjct: 286 AGKPVI--CATQMLDSMTYNPRPTRAEVSDVGNAVLDGADCVMLSGETAKGTYPIESVKM 343
Query: 252 TYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQV 288
+E V E A+ +APL ++ TE++ ++ +
Sbjct: 344 MHETCLVAEKAIAYAPLFNEMRTLTVRPTETVETIAI 380
>gi|2688026 (AE001125) membrane fusion protein (mtrC) [Borrelia
burgdorferi]
Length = 318
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 13 LLPLALTAC-GNNHAPDPRTEA--------PLVRVVAVQGAFATSRSFTGVVAARVQSDL 63
+L L L AC G+N D + P++ + +G + S G V +V++D+
Sbjct: 18 VLFLVLVACVGDNKLDDKNIDKEKESSYRFPVIAMKVKKGILSDYLSLNGDVDTKVKADI 77
Query: 64 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDP 93
GK+ + G V++GQ + ++DP
Sbjct: 78 FPDAVGKITSLRIKLGAYVQKGQIVATLDP 107
>gi|3798624 (AF082100) FK506 polyketide synthase [Streptomyces sp.
MA6548]
Length = 7576
Score = 32.8 bits (73), Expect = 4.5
Identities = 27/88 (30%), Positives = 38/88 (42%), Gaps = 4/88 (4%)
Query: 190 VSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRV 249
V G RLA G R V++ + P + + TL G+P AV+ LR A R
Sbjct: 3535 VRFGAAAARLAELGHR---VFVEASPHPVLTTALADTLAGHPNTAVTGTLRRGDGGARRF 3591
Query: 250 TRTYEARYVLEGALLHAPLGATVKVEIP 277
TR+ +V G + P G V +P
Sbjct: 3592 TRSLAELWV-RGVPVSWPFGELRGVPLP 3618
>gi|586667|sp|P37626|YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN
RHSB-PIT INTERGENIC REGION PRECURSOR (F355)
>gi|1073452|pir||S47707 hypothetical protein f355 -
Escherichia coli >gi|466624 (U00039) No definition line
found [Escherichia coli] >gi|1789900 (AE000424) putative
membrane protein [Escherichia coli]
Length = 355
Score = 32.1 bits (71), Expect = 7.8
Identities = 23/86 (26%), Positives = 39/86 (44%), Gaps = 2/86 (2%)
Query: 171 LLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLY-- 228
L A DG V +AEPG+V++AG V+ + + +LP + G+A L
Sbjct: 214 LKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILD 273
Query: 229 GNPQAAVSARLRVLSNAADRVTRTYE 254
P + A + +++ A +T E
Sbjct: 274 AAPDLRIPATISFVASVAQFTPKTVE 299
>gi|4972055|emb|CAB43923.1| (AL078470) putative protein [Arabidopsis
thaliana]
Length = 575
Score = 32.1 bits (71), Expect = 7.8
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 240 RVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKG 299
R+LS + + +++RY + L+APLG+ S L+ A+ G+
Sbjct: 75 RMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGED 134
Query: 300 PGVW---VIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLG 343
+W +D KPA A R +V + A V LKV D + G
Sbjct: 135 IIIWRHKWLDSKPASAALRMQRV--PPQEYASVSSILKVSDLIDESG 179
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.318 0.137 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82534212
Number of Sequences: 449381
Number of extensions: 3078020
Number of successful extensions: 6798
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6768
Number of HSP's gapped (non-prelim): 44
length of query: 368
length of database: 138,416,789
effective HSP length: 57
effective length of query: 311
effective length of database: 112,802,072
effective search space: 35081444392
effective search space used: 35081444392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)