BLASTP 2.0.10 [Aug-26-1999]
Query= XF-11A03-GL51
(421 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|3650360|emb|CAA77045| (Y18131) polynucleotide adenylyltransf... 378 e-104
gi|1786336 (AE000123) poly(A) polymerase I [Escherichia coli] 376 e-103
gi|2507091|sp|P13685|PCNB_ECOLI POLY(A) POLYMERASE (PAP) (PLASM... 376 e-103
gi|628784|pir||S45212 plasmid copy number control protein - Esc... 347 1e-94
gi|482420|pir||A45922 nucleic acid-binding protein pcnB - Esche... 344 8e-94
gi|1172043|sp|P44439|PCNB_HAEIN PROBABLE POLY(A) POLYMERASE (PA... 332 4e-90
gi|4377290|gb|AAD19102| (AE001676) Poly A Polymerase [Chlamydia... 229 3e-59
gi|3328838|gb|AAC68007.1| (AE001314) PolyA Polymerase [Chlamydi... 216 2e-55
gi|3322888 (AE001234) polynucleotide adenylyltransferase (pcnB)... 172 4e-42
gi|3329159|gb|AAC68299.1| (AE001341) Poly A Polymerase [Chlamyd... 146 3e-34
gi|4377160|gb|AAD18983| (AE001665) Poly A Polymerase [Chlamydia... 138 7e-32
gi|3322543 (AE001208) polynucleotide adenylyltransferase (pcnA)... 138 1e-31
gi|1709578|sp|P42977|PAPS_BACSU POLY(A) POLYMERASE (PAP) >gi|11... 127 2e-28
gi|4808392|emb|CAB42723.1| (AL049826) putative RNA nucleotidylt... 121 1e-26
gi|2688624 (AE001170) polynucleotide adenylyltransferase (papS)... 117 2e-25
gi|755607 (L38424) polyA polymerase [Bacillus subtilis] 109 3e-23
gi|886309 (L39923) polyA polymerase [Mycobacterium leprae] 102 4e-21
gi|4914379|gb|AAD32915.1|AC007584_13 (AC007584) putative poly(A... 100 3e-20
gi|1944582|emb|CAB08094| (Z94121) pcnA [Mycobacterium tuberculo... 96 7e-19
gi|4929563|gb|AAD34042.1|AF151805_1 (AF151805) CGI-47 protein [... 91 2e-17
gi|4204222|dbj|BAA74513| (AB022867) polyA polymerase [Prevotell... 88 1e-16
gi|2313761|gb|AAD07702.1| (AE000578) poly(A) polymerase (papS) ... 85 1e-15
gi|115939|sp|P06961|CCA_ECOLI TRNA NUCLEOTIDYLTRANSFERASE (TRNA... 84 2e-15
gi|2983086 (AE000689) poly A polymerase [Aquifex aeolicus] 84 2e-15
gi|3860586|emb|CAA14487| (AJ235270) POLY(A) POLYMERASE (pcnB) [... 83 4e-15
gi|6760461|gb|AAF28362.1|AF224467_1 (AF224467) tRNA nucleotidyl... 82 1e-14
gi|4155144 (AE001491) POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helic... 81 2e-14
gi|3877673|emb|CAB02125.1| (Z79757) Similar to B.subtilis Poly(... 80 5e-14
gi|1168822|sp|P45269|CCA_HAEIN TRNA NUCLEOTIDYLTRANSFERASE (TRN... 77 3e-13
gi|559391|emb|CAA57198| (X81440) ORFIII [Acidaminococcus fermen... 76 5e-13
gi|4981239|gb|AAD35797.1|AE001742_12 (AE001742) tRNA nucleotidy... 74 3e-12
gi|4455659|emb|CAB36624.1| (AL034390) possible tRNA nucleotidyl... 71 2e-11
gi|6458932|gb|AAF10763.1|AE001968_2 (AE001968) tRNA nucleotidyl... 70 3e-11
gi|1168821|sp|P45749|CCA_AERHY TRNA NUCLEOTIDYLTRANSFERASE (TRN... 69 7e-11
gi|281493|pir||S27736 hypothetical protein B - Thermus aquaticu... 69 9e-11
gi|2984364 (AE000776) poly A polymerase [Aquifex aeolicus] 68 2e-10
gi|4539282|emb|CAB39906.1| (AL049498) putative trna nucleotidyl... 65 1e-09
gi|3287692 (AC003979) Similar to tRNA adenylyltransferase gb|U1... 64 3e-09
gi|1001282|dbj|BAA10528| (D64003) polyA polymerase [Synechocyst... 62 1e-08
gi|2129851|pir||S65148 tRNA adenylyltransferase (EC 2.7.7.25) -... 61 2e-08
gi|6318263|emb|CAB60249.1| (AL132839) putative tRNA nucleotidyl... 59 6e-08
gi|6321016|ref|NP_011095.1|CCA1| tRNA nucleotidyltransferase (t... 58 1e-07
gi|6458711|gb|AAF10560.1|AE001950_12 (AE001950) tRNA nucleotidy... 57 3e-07
gi|1653244|dbj|BAA18159| (D90912) polyA polymerase [Synechocyst... 57 4e-07
gi|421154|pir||A46418 poly(A) polymerase - Escherichia coli (fr... 50 5e-05
gi|2146782|pir||S65142 tRNA nucleotidyltransferase (EC 2.7.7.25... 37 0.28
gi|6460273|gb|AAF11997.1|AE002075_1 (AE002075) cation-transport... 35 1.4
gi|3191978|emb|CAA19377| (AL023797) putative protein pII uridyl... 34 1.8
gi|3913200|sp|Q47907|CCA_FRANO TRNA NUCLEOTIDYLTRANSFERASE (TRN... 34 3.2
gi|3294243|emb|CAA19856| (AL031031) hypothetical protein SC7C7.... 33 4.1
gi|548757|sp|P36248|RL1_CGDAB 50S RIBOSOMAL PROTEIN L1 >gi|1444... 32 7.1
gi|6714746|emb|CAB66211.1| (AL136502) putative ABC transporter,... 32 7.1
>gi|3650360|emb|CAA77045| (Y18131) polynucleotide
adenylyltransferase [Pseudomonas putida]
Length = 463
Score = 378 bits (960), Expect = e-104
Identities = 206/423 (48%), Positives = 272/423 (63%), Gaps = 7/423 (1%)
Query: 4 VVPRGHHTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPE 63
V+ + H++ R S +A+ ++ RL+ AG+ AYLVGG VRDL++G PKDFD+AT ATPE
Sbjct: 28 VINKSQHSLQRHQFSRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPE 87
Query: 64 QIKQLFRSCRLIGRRFRLAHVVFGREIIEVATFRAN-SDDGSGDRELEN----GRLVCDN 118
Q++ FR+ R+IGRRF+L HV FGREIIEVATFRA+ S+D GD + GR++ DN
Sbjct: 88 QVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDN 147
Query: 119 VYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRM 178
VYGT+E+DA RRDFT NALYY + DY G DV++RL+RLIGDP RYQEDPVRM
Sbjct: 148 VYGTLEEDAQRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRM 207
Query: 179 LRAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDF 238
LRAVR A KL F IE T PI +A +L ++ PARLFEE LKLFLSG +FE L D
Sbjct: 208 LRAVRFAAKLDFGIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDL 267
Query: 239 GLIDVLFPESAKALRANRSGALRRVLIEGLHSTDKRVIKEEPVSPAFLFALLLWPGFCHA 298
L + LFP SA AL R ++ + L++TD RV + +PV+PAFLFA LLWP
Sbjct: 268 ELFEPLFPASAHAL-DERPTYTHTLISQALNNTDLRVKQGKPVTPAFLFAALLWPALPAR 326
Query: 299 LVTLQLQGVQPEEAQRRAADRVTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLR 358
++ LQ QGV P A AA + R+A+P+RF+LP++EIW +Q R R KR
Sbjct: 327 VLHLQNQGVPPIPAMNGAAHDLIAEQCARIAIPKRFTLPIREIWDMQERLPRRSGKRADM 386
Query: 359 LLEHPRFRAAFDFLVVRLAASAEHAADVEFWRVAQQQPSEDSLASAIDAVRFESEEVGVS 418
LL++PRFRA +DFL++R +A E D+ W Q ++ I + E G
Sbjct: 387 LLDNPRFRAGYDFLLLRESA-GEETDDLGQWWTDYQDANDSERREMIRELGSRDESAGPR 445
Query: 419 RQR 421
+++
Sbjct: 446 KRK 448
>gi|1786336 (AE000123) poly(A) polymerase I [Escherichia coli]
Length = 454
Score = 376 bits (956), Expect = e-103
Identities = 200/412 (48%), Positives = 274/412 (65%), Gaps = 9/412 (2%)
Query: 4 VVPRGHHTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPE 63
V+PR H ISRKDIS NAL+V+YRL +AG+ A+LVGG VRDLL+G PKDFD+ T+ATPE
Sbjct: 20 VIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPE 79
Query: 64 QIKQLFRSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREL----ENGRLVCDNV 119
Q+++LFR+CRL+GRRFRLAHV+FG EIIEVATFR + + DR +NG L+ DN+
Sbjct: 80 QVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNI 139
Query: 120 YGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRML 179
+G+IE+DA RRDFT N+LYY++ DF+VRDYVGG +D++ ++RLIG+P RY+EDPVRML
Sbjct: 140 FGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRML 199
Query: 180 RAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFG 239
RAVR A KLG I TAEPI R+A LL D+ PARLFEE LKL +G+ +++ L ++
Sbjct: 200 RAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYH 259
Query: 240 LIDVLFPESAKALRANRSGALRRVLIEGLHSTDKRVIKEEPVSPAFLFALLLW-PGFCHA 298
L LFP + N + R++ + L +TD R+ + V+PAFLFA + W P A
Sbjct: 260 LFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 319
Query: 299 LVTLQLQGVQPEEAQRRAADRVTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLR 358
Q G+ +A A + V +A+P+R + ++IW LQ R RQ KR +
Sbjct: 320 QKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWK 379
Query: 359 LLEHPRFRAAFDFLVVR--LAASAEHAADVEFWRVAQ--QQPSEDSLASAID 406
LLEHP+FRAA+D L +R + +AE V++W Q P + + + +D
Sbjct: 380 LLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELD 431
>gi|2507091|sp|P13685|PCNB_ECOLI POLY(A) POLYMERASE (PAP) (PLASMID
COPY NUMBER PROTEIN)
Length = 472
Score = 376 bits (956), Expect = e-103
Identities = 200/412 (48%), Positives = 274/412 (65%), Gaps = 9/412 (2%)
Query: 4 VVPRGHHTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPE 63
V+PR H ISRKDIS NAL+V+YRL +AG+ A+LVGG VRDLL+G PKDFD+ T+ATPE
Sbjct: 38 VIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPE 97
Query: 64 QIKQLFRSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREL----ENGRLVCDNV 119
Q+++LFR+CRL+GRRFRLAHV+FG EIIEVATFR + + DR +NG L+ DN+
Sbjct: 98 QVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNI 157
Query: 120 YGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRML 179
+G+IE+DA RRDFT N+LYY++ DF+VRDYVGG +D++ ++RLIG+P RY+EDPVRML
Sbjct: 158 FGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRML 217
Query: 180 RAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFG 239
RAVR A KLG I TAEPI R+A LL D+ PARLFEE LKL +G+ +++ L ++
Sbjct: 218 RAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYH 277
Query: 240 LIDVLFPESAKALRANRSGALRRVLIEGLHSTDKRVIKEEPVSPAFLFALLLW-PGFCHA 298
L LFP + N + R++ + L +TD R+ + V+PAFLFA + W P A
Sbjct: 278 LFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 337
Query: 299 LVTLQLQGVQPEEAQRRAADRVTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLR 358
Q G+ +A A + V +A+P+R + ++IW LQ R RQ KR +
Sbjct: 338 QKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWK 397
Query: 359 LLEHPRFRAAFDFLVVR--LAASAEHAADVEFWRVAQ--QQPSEDSLASAID 406
LLEHP+FRAA+D L +R + +AE V++W Q P + + + +D
Sbjct: 398 LLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELD 449
>gi|628784|pir||S45212 plasmid copy number control protein -
Escherichia coli >gi|473802|dbj|BAA05591| (D26562)
'plasmid copy number control protein pcnB' [Escherichia
coli]
Length = 414
Score = 347 bits (880), Expect = 1e-94
Identities = 185/391 (47%), Positives = 257/391 (65%), Gaps = 9/391 (2%)
Query: 25 LYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHV 84
+YRL +AG+ A+LVGG VRDLL+G PKDFD+ T+ATPEQ+++LFR+CRL+GRRFRLAHV
Sbjct: 1 MYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHV 60
Query: 85 VFGREIIEVATFRANSDDGSGDREL----ENGRLVCDNVYGTIEDDATRRDFTCNALYYT 140
+FG EIIEVATFR + + DR +NG L+ DN++G+IE+DA RRDFT N+LYY+
Sbjct: 61 MFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYS 120
Query: 141 IEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPI 200
+ DF+VRDYVGG +D++ ++RLIG+P RY+EDPVRMLRAVR A KLG I TAEPI
Sbjct: 121 VADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPI 180
Query: 201 SRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSGAL 260
R+A LL D+ PARLFEE LKL +G+ +++ L ++ L LFP + N +
Sbjct: 181 PRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPM 240
Query: 261 RRVLIEGLHSTDKRVIKEEPVSPAFLFALLLW-PGFCHALVTLQLQGVQPEEAQRRAADR 319
R++ + L +TD R+ + V+PAFLFA + W P A Q G+ +A A +
Sbjct: 241 ERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMND 300
Query: 320 VTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLRLLEHPRFRAAFDFLVVR--LA 377
V +A+P+R + ++IW LQ R RQ KR +LLEHP+FRAA+D L +R +
Sbjct: 301 VLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVE 360
Query: 378 ASAEHAADVEFWRVAQ--QQPSEDSLASAID 406
+AE V++W Q P + + + +D
Sbjct: 361 RNAELQRLVKWWGEFQVSAPPDQKGMLNELD 391
>gi|482420|pir||A45922 nucleic acid-binding protein pcnB -
Escherichia coli >gi|147117 (M20574) plasmid copy number
protein [Escherichia coli]
Length = 410
Score = 344 bits (873), Expect = 8e-94
Identities = 184/391 (47%), Positives = 255/391 (65%), Gaps = 9/391 (2%)
Query: 25 LYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHV 84
+YRL +AG+ A+LVGG VRDLL+G PKDFD+ T+ATPEQ+ +LFR+CRL+GRRFRLAHV
Sbjct: 1 MYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVAKLFRNCRLVGRRFRLAHV 60
Query: 85 VFGREIIEVATFRANSDDGSGDREL----ENGRLVCDNVYGTIEDDATRRDFTCNALYYT 140
+FG EIIEVATFR + + DR +NG L+ DN++G+IE+DA RRDFT N+LYY+
Sbjct: 61 MFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYS 120
Query: 141 IEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPI 200
+ DF+VRDYVGG +D++ ++RLIG+P RY+EDPVRMLRAVR A KLG I TAEPI
Sbjct: 121 VADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPI 180
Query: 201 SRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSGAL 260
R+A LL D+ PARLFEE LKL +G+ +++ L ++ L LFP + N +
Sbjct: 181 PRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPM 240
Query: 261 RRVLIEGLHSTDKRVIKEEPVSPAFLFALLLW-PGFCHALVTLQLQGVQPEEAQRRAADR 319
R++ + L +TD R+ + V+P FLFA + W P A Q G+ +A A +
Sbjct: 241 ERIIEQVLKNTDTRIHNDMRVNPTFLFAAMFWYPLLETAQNIAQESGLTYHDAFALAMND 300
Query: 320 VTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLRLLEHPRFRAAFDFLVVR--LA 377
V +A+P+R + ++IW LQ R RQ KR +LLEHP+FRAA+D L +R +
Sbjct: 301 VLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVE 360
Query: 378 ASAEHAADVEFWRVAQ--QQPSEDSLASAID 406
+AE V++W Q P + + + +D
Sbjct: 361 RNAELQRLVKWWGEFQVSAPPDQKGIVNELD 391
>gi|1172043|sp|P44439|PCNB_HAEIN PROBABLE POLY(A) POLYMERASE (PAP)
>gi|1075158|pir||B64046 plasmid copy number control
protein (pcnB) homolog - Haemophilus influenzae (strain
Rd KW20) >gi|1573011 (U32691) poly(A) polymerase (pcnB)
[Haemophilus influenzae Rd]
Length = 452
Score = 332 bits (842), Expect = 4e-90
Identities = 173/391 (44%), Positives = 242/391 (61%), Gaps = 5/391 (1%)
Query: 4 VVPRGHHTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPE 63
V+ IS +D S NAL V+ +L+ GF AY+VGG +RDLL+G PKDFD+AT+A PE
Sbjct: 19 VIKAAQFDISPRDFSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPE 78
Query: 64 QIKQLF-RSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELEN---GRLVCDNV 119
QI+ +F R CRL+GRRFRLAH++FGR+IIEVATFRAN D + + + G L+ DNV
Sbjct: 79 QIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNV 138
Query: 120 YGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRML 179
YGTIE DA RRDFT NALYY +D ++RDY G +D+++ +RLIGDPV RYQEDPVRML
Sbjct: 139 YGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRML 198
Query: 180 RAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFG 239
R++R KL +E + +PI +A LL ++ PARLF+E LKL +G V ++ L +G
Sbjct: 199 RSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYG 258
Query: 240 LIDVLFPESAKALRANRSGALRRVLIEGLHSTDKRVIKEEPVSPAFLFALLLWPGFCHAL 299
L + LFP + R+++ L STD+RV + ++PAFLFA W +
Sbjct: 259 LFEQLFPALSAYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKV 318
Query: 300 VTLQLQ-GVQPEEAQRRAADRVTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLR 358
L+ + G+ +A A + V +A PRR + +++IW LQ + + R +R
Sbjct: 319 EILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGSAPMR 378
Query: 359 LLEHPRFRAAFDFLVVRLAASAEHAADVEFW 389
+EHP+FRA FD L +R ++ W
Sbjct: 379 TMEHPKFRAGFDLLAMRAEIEGGETIELAKW 409
>gi|4377290|gb|AAD19102| (AE001676) Poly A Polymerase [Chlamydia
pneumoniae]
Length = 430
Score = 229 bits (579), Expect = 3e-59
Identities = 123/286 (43%), Positives = 181/286 (63%), Gaps = 10/286 (3%)
Query: 9 HHTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQL 68
+H I KD SP+AL V+ LR+AG+ AY+VGG +RDLL+ PKDFD++T A PE+IK +
Sbjct: 33 NHNIKLKDFSPHALSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAI 92
Query: 69 FRSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDAT 128
F++C L+G+RFRLAH+ F ++IIEV+TFR+ S D E+ + DN++GT E+D
Sbjct: 93 FKNCILVGKRFRLAHIRFSKQIIEVSTFRSGSTD-------EDVLITKDNLWGTPEEDVL 145
Query: 129 RRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKL 188
RRDFT N L+Y E + DY GG D+++R +R IGDP R+++DPVRMLR +++ +
Sbjct: 146 RRDFTINGLFYDPEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSRS 205
Query: 189 GFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPES 248
F +E T E + L + AR+FEE++K+ SG A F+ L + L+++LFP
Sbjct: 206 PFTVETQTQEALIACRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPYM 265
Query: 249 AKALRANRSGALRRVLIEGLHSTDKRVIKEEPVSPAF-LFALLLWP 293
KA R NR AL L + D +++K+E L A+ L+P
Sbjct: 266 DKAFRLNR--ALEEQTATYLKALDDKILKKEAEYDRHQLMAIFLFP 309
>gi|3328838|gb|AAC68007.1| (AE001314) PolyA Polymerase [Chlamydia
trachomatis]
Length = 425
Score = 216 bits (545), Expect = 2e-55
Identities = 112/285 (39%), Positives = 177/285 (61%), Gaps = 10/285 (3%)
Query: 10 HTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLF 69
H I + S +AL V+ L++AG+ AY+VGG +RDLL+ PKDFD++T A PE++K LF
Sbjct: 35 HNIDLQSFSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLF 94
Query: 70 RSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATR 129
++C L+G+RFRLAH+ F +IIEVATFR+ S++ E+ + DN++G+ E+D R
Sbjct: 95 KNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE-------EDSLITKDNLWGSAEEDVLR 147
Query: 130 RDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLG 189
RDFT N L+Y + DY GG ED+++R +R IGDP R+++DPVRMLR +++ +
Sbjct: 148 RDFTINGLFYDPSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA 207
Query: 190 FEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESA 249
F ++ T E + L + R+FEE++K+ SG + F+ + ++++LFP A
Sbjct: 208 FTVDPKTLEALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
Query: 250 KALRANRSGALRRVLIEGLHSTDKRVIKEEPVSPA-FLFALLLWP 293
KA +++ L+ L + D ++ K S FL A+LL+P
Sbjct: 268 KAFSLSKT--LQDQTFACLTALDTKIQKRSFCSERHFLLAILLFP 310
>gi|3322888 (AE001234) polynucleotide adenylyltransferase (pcnB)
[Treponema pallidum]
Length = 370
Score = 172 bits (432), Expect = 4e-42
Identities = 102/243 (41%), Positives = 140/243 (56%), Gaps = 12/243 (4%)
Query: 4 VVPRGHHTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPE 63
V H I R+ + A+RV+ L AG+ Y+VGGAVRDL+ G PKDFD+ T A P
Sbjct: 19 VYTESEHGIPRQSVDAGAIRVVEALVGAGYETYIVGGAVRDLVAGRTPKDFDIVTGAVPS 78
Query: 64 QIKQLFRSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTI 123
+I++LFR+ R+IGRRFR+ HV G ++ EV+TFR+ +GS VC V GT+
Sbjct: 79 RIRRLFRNSRIIGRRFRIVHVSCGSQLYEVSTFRSRVGEGS----------VC--VPGTL 126
Query: 124 EDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVR 183
E+DA RRDF+ NALYY V D VGG D++ R +R + + EDPVRMLRA++
Sbjct: 127 EEDAWRRDFSVNALYYDPLRNVVIDCVGGMVDLKRRRVRPLIPLRSIFVEDPVRMLRALK 186
Query: 184 LAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDV 243
+V I I R LL +P+RL +E +K+ SG + A AL + L+
Sbjct: 187 CSVMCESSIPFSVRRSIRRSVSLLGGCSPSRLTDEFVKILFSGRSAALVRALCGYQLLLY 246
Query: 244 LFP 246
L P
Sbjct: 247 LQP 249
>gi|3329159|gb|AAC68299.1| (AE001341) Poly A Polymerase [Chlamydia
trachomatis]
Length = 410
Score = 146 bits (365), Expect = 3e-34
Identities = 91/266 (34%), Positives = 148/266 (55%), Gaps = 13/266 (4%)
Query: 21 ALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFR 80
A +++ +LR AG+ AY VGG+VRD+L+G ++ D+AT+A+P + +F IG F
Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDTLSIGAAFG 68
Query: 81 LAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYT 140
+ V ++ EVATFR+ D + E+GR V+ +++DDA RRDFT N +YY
Sbjct: 69 IIAVKENGQLFEVATFRS-------DEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYD 121
Query: 141 IEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEP- 199
+ + D V G D++ +++R IG P +R+ ED +R+LRA+R A LGF ++ T +
Sbjct: 122 PFEEKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLGFALDPQTEQAI 181
Query: 200 ISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSGA 259
I + L V+P R+++E LK L S + L ++ +LFPE L+ + SG
Sbjct: 182 IKELPSLPNSVSPERIWQE-LKKMLRTAPYESLQLLTKLKVLPILFPE----LKVSSSGF 236
Query: 260 LRRVLIEGLHSTDKRVIKEEPVSPAF 285
LR + D ++ + + P F
Sbjct: 237 LRSAIAFAQKIHDSQIPEIALLLPLF 262
>gi|4377160|gb|AAD18983| (AE001665) Poly A Polymerase [Chlamydia
pneumoniae]
Length = 410
Score = 138 bits (345), Expect = 7e-32
Identities = 95/284 (33%), Positives = 146/284 (50%), Gaps = 22/284 (7%)
Query: 21 ALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFR 80
A +VL +LR AG+ AY VGG VRD+L+ +D D+AT+A+P + +F IG F
Sbjct: 9 AKKVLIKLRNAGYQAYFVGGCVRDMLMNRPLEDIDIATNASPTIVSTIFPDVISIGVAFG 68
Query: 81 LAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYT 140
+ V + EVATFR+ D E ++GR ++ ++ +DA RRDFT N +YY
Sbjct: 69 IIVVKQDGRLFEVATFRS-------DGEYKDGRHPDRIIFSSMREDALRRDFTVNGMYYD 121
Query: 141 IEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPI 200
+ V D+V G D++ +++R IG P R+ ED +R+LRA+R + LGF ++ T I
Sbjct: 122 PFEDKVFDFVEGTRDIEKKVIRAIGHPRLRFSEDKLRILRAIRFSSSLGFTLDPTTERAI 181
Query: 201 SRMA-GLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSGA 259
+ A L+ V+P R+++E LK L + L ++ +FPE
Sbjct: 182 IKEAPALVNSVSPERIWQE-LKKMLKRQPYGALSLLLKLKVLIFIFPE------------ 228
Query: 260 LRRVLIEGLHSTDKRVIKEEPVS-PAFLFALLLWPGFCHALVTL 302
LR + L +T + K P P LF L L+ G T+
Sbjct: 229 LRDIPYSLLRTTIEFARKFNPTHFPEILFLLPLFQGVSEEAATV 272
>gi|3322543 (AE001208) polynucleotide adenylyltransferase (pcnA)
[Treponema pallidum]
Length = 478
Score = 138 bits (343), Expect = 1e-31
Identities = 88/239 (36%), Positives = 122/239 (50%), Gaps = 6/239 (2%)
Query: 17 ISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIG 76
+ P V R AGF Y+VGGAVRD L+ D+DLATDA PE+++ LFR G
Sbjct: 6 VCPLLREVSERFIRAGFCIYVVGGAVRDFLLNRSAHDWDLATDAPPERVRMLFRRTVPTG 65
Query: 77 RRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNA 136
++F IE TFR SD DR + VC IEDD RRDFT NA
Sbjct: 66 IEHGTVTILFRGHSIECTTFRVESD--YSDRRHPDS--VC--FAARIEDDLARRDFTVNA 119
Query: 137 LYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGT 196
+ + D GG+ D+++ L+ +GD R+ ED +R LRAVR A +L F IEA T
Sbjct: 120 FAAALPSGEIIDVCGGYADLRNGLICSVGDAHARFSEDALRPLRAVRFAAQLSFSIEART 179
Query: 197 AEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRAN 255
E I + A ++ R+ +E+ K+ + + +E+ GL+ LFP A+ N
Sbjct: 180 REAIIALRAHTARISRERVRDELSKMLCTPRPSIALRLMEETGLLHTLFPALAQVCGRN 238
>gi|1709578|sp|P42977|PAPS_BACSU POLY(A) POLYMERASE (PAP)
>gi|1146238 (L47709) poly(A) polymerase [Bacillus
subtilis] >gi|2634663|emb|CAB14161| (Z99115) poly(A)
polymerase [Bacillus subtilis]
Length = 397
Score = 127 bits (315), Expect = 2e-28
Identities = 85/208 (40%), Positives = 114/208 (53%), Gaps = 8/208 (3%)
Query: 21 ALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFR 80
AL VL L EAG AY VGGAVRD + D D+ATDA P+Q+++LF+ +G+
Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRTVDVGKEHG 67
Query: 81 LAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYT 140
V++ E EV TFR SD R E ++E+D RRD T NA+ T
Sbjct: 68 TIIVLWEDETYEVTTFRTESDYVDFRRPSEV------QFISSLEEDLKRRDLTINAMAMT 121
Query: 141 IEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPI 200
D V DY GG +D+ +++R +G P R+QED +RMLRAVR +LGF + T E I
Sbjct: 122 A-DGKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGFTLSPETEEAI 180
Query: 201 SRMAGLLADVAPARLFEEVLKLFLSGHA 228
++ LL+ V+ R E KL L G A
Sbjct: 181 AKEKSLLSHVSVERKTIEFEKL-LQGRA 207
>gi|4808392|emb|CAB42723.1| (AL049826) putative RNA
nucleotidyltransferase [Streptomyces coelicolor]
Length = 483
Score = 121 bits (300), Expect = 1e-26
Identities = 85/260 (32%), Positives = 133/260 (50%), Gaps = 16/260 (6%)
Query: 4 VVPRGHHTISRKD--ISPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDAT 61
V+ + H +R+ ++P A + R +EAGF LVGG+VRD L+G D D TDA
Sbjct: 11 VLSQEQHRAAREPLRVAPVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDAR 70
Query: 62 PEQIKQLFRSCRLIGRRFRLAHVVFGREI----IEVATFRANSDDGSGDRELENGRLVCD 117
P+ + ++ R +A G + IEV T+R+ + D + + +
Sbjct: 71 PQDVLKIMRPWADAVWEVGIAFGTVGGQKDGWQIEVTTYRSEAYDRTSRKP--------E 122
Query: 118 NVYG-TIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPV 176
YG +IE+D RRDFT NA+ + + D GG +D+ +R++R G P + +DP+
Sbjct: 123 VSYGDSIEEDLVRRDFTVNAMAVALPEKVFIDPHGGLDDLAARVLRTPGTPEDSFSDDPL 182
Query: 177 RMLRAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALE 236
RM+RA R A +L FE+ + + MAG + V+ R+ +E+ KL LS H L
Sbjct: 183 RMMRAARFAAQLDFEVAPEVVKAMHDMAGRIDIVSAERVRDELNKLILSPHPRKGLSLLV 242
Query: 237 DFGLIDVLFPESAKALRANR 256
+ GL + + PE ALR R
Sbjct: 243 ETGLAERVLPE-LPALRLER 261
>gi|2688624 (AE001170) polynucleotide adenylyltransferase (papS)
[Borrelia burgdorferi]
Length = 410
Score = 117 bits (290), Expect = 2e-25
Identities = 70/206 (33%), Positives = 112/206 (53%), Gaps = 8/206 (3%)
Query: 18 SPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGR 77
+PN +++ ++ + YLVGGA+RDLL+ P DFD AT+ATPE+I LF + G
Sbjct: 7 NPNIIKIGKIFKKNNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNNIKTGI 66
Query: 78 RFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVY-GTIEDDATRRDFTCNA 136
+ ++F ++I E+ T+R ++E EN R Y + D RRDFT NA
Sbjct: 67 KHGTIGIIFNKKIFEITTYRI-------EKEYENNRAPKQVEYTKNLLKDLERRDFTINA 119
Query: 137 LYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGT 196
+ I +F++ D G +D+ +++R IG+P +R +ED +R+LRA R + L F IE T
Sbjct: 120 IAMDIFNFNIIDCYNGKKDLNKKIIRCIGNPNKRLEEDALRILRAARFSSTLNFNIEKNT 179
Query: 197 AEPISRMAGLLADVAPARLFEEVLKL 222
+ + ++ R+ E KL
Sbjct: 180 LISMKYKKENILMISKERIKNEFHKL 205
>gi|755607 (L38424) polyA polymerase [Bacillus subtilis]
Length = 377
Score = 109 bits (271), Expect = 3e-23
Identities = 78/208 (37%), Positives = 107/208 (50%), Gaps = 28/208 (13%)
Query: 21 ALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFR 80
AL VL L EAG AY VGGAVRD + D D+ATDA P+Q+++LF+
Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT-------- 59
Query: 81 LAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYT 140
V G++ + FR S+ ++E+D RRD T NA+ T
Sbjct: 60 ---VDVGKDESDYVDFRRPSEV---------------QFISSLEEDLKRRDLTINAMAMT 101
Query: 141 IEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPI 200
D V DY GG +D+ +++R +G P R+QED +RMLRAVR +LGF + T E I
Sbjct: 102 A-DGKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGFTLSPETEEAI 160
Query: 201 SRMAGLLADVAPARLFEEVLKLFLSGHA 228
++ LL+ V+ R E KL L G A
Sbjct: 161 AKEKSLLSHVSVERKTIEFEKL-LQGRA 187
>gi|886309 (L39923) polyA polymerase [Mycobacterium leprae]
Length = 411
Score = 102 bits (253), Expect = 4e-21
Identities = 74/226 (32%), Positives = 112/226 (48%), Gaps = 17/226 (7%)
Query: 31 AGFGAYLVGGAVRDLLVGG-HPKDFDLATDATPEQIKQLFR----SCRLIGRRFRLAHVV 85
+G YLVGG+VRD L+G D D ATDA PEQ++Q+ R + G F V
Sbjct: 35 SGHELYLVGGSVRDALLGRLDSPDLDFATDAGPEQVQQIMRRWADNLWETGIEFGTIGVG 94
Query: 86 FGREIIEVATFRANS-DDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDF 144
G +E+ TFRA+ D S + E+ ++DD RRDFT NA+ I +
Sbjct: 95 KGDYRLEITTFRADRYDQVSRNPEVRFS--------DRLDDDLVRRDFTVNAMAVRIASY 146
Query: 145 SVRDY---VGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPIS 201
++ +GG ++ R++ P + +DP+R++RA R +LGF + I
Sbjct: 147 GPGEFFDPLGGLAALRVRVLETPAAPSVSFGDDPLRIVRAARFVSQLGFTVAPQVHAAIE 206
Query: 202 RMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPE 247
MA LA ++ R+ E+ KL L A A + L G+ +V+ PE
Sbjct: 207 EMASQLARISAERVSTELDKLLLGNDAAAGIDLLVQTGMGEVVLPE 252
>gi|4914379|gb|AAD32915.1|AC007584_13 (AC007584) putative poly(A)
polymerase [Arabidopsis thaliana]
Length = 241
Score = 100 bits (246), Expect = 3e-20
Identities = 61/180 (33%), Positives = 99/180 (54%), Gaps = 19/180 (10%)
Query: 31 AGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREI 90
+GF AYLVGG VRDL++ PKD+D+ T A +QI++LF ++IG+RF + HV G I
Sbjct: 17 SGFDAYLVGGCVRDLILNRVPKDYDVITTADLKQIRRLFHRAQVIGKRFPICHVWMGGSI 76
Query: 91 IEVATF-RANSDDGSGDRELENGRLVCD----------NVYG--TIED-----DATRRDF 132
IEV++F D ++ E + D +Y I+D ++ +RDF
Sbjct: 77 IEVSSFDTVAHSDSDLEKSKEKSGVSLDTKANKNNSLFKMYSGWDIKDCKRWRNSLQRDF 136
Query: 133 TCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEI 192
T N+L+Y DF++ DY G ED+ +++ + + + R+LR +R+A +LG +
Sbjct: 137 TINSLFYNPFDFTIYDYANGMEDLTDLKFKVL-TILSWFSPNTARILRGLRIAARLGLSL 195
>gi|1944582|emb|CAB08094| (Z94121) pcnA [Mycobacterium tuberculosis]
Length = 480
Score = 95.6 bits (234), Expect = 7e-19
Identities = 70/225 (31%), Positives = 108/225 (47%), Gaps = 16/225 (7%)
Query: 31 AGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFR----SCRLIGRRFRLAHVVF 86
AG YLVGG+VRD L+G D D TDA PE+++++ R + G F V
Sbjct: 35 AGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTGIEFGTVGVGK 94
Query: 87 GREIIEVATFRANSDDG-SGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFS 145
+E+ TFRA+S D S E+ G +E D RRDFT NA+ +
Sbjct: 95 SDHRMEITTFRADSYDRVSRHPEVRFG--------DCLEGDLVRRDFTTNAMAVRVTATG 146
Query: 146 VRDYV---GGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISR 202
+++ GG ++++++ P + +DP+RMLRA R +LGF + I
Sbjct: 147 PGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGFAVAPRVRAAIEE 206
Query: 203 MAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPE 247
MA LA ++ R+ E+ KL + A + + G+ V+ PE
Sbjct: 207 MAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPE 251
>gi|4929563|gb|AAD34042.1|AF151805_1 (AF151805) CGI-47 protein [Homo
sapiens]
Length = 405
Score = 90.9 bits (222), Expect = 2e-17
Identities = 65/199 (32%), Positives = 102/199 (50%), Gaps = 17/199 (8%)
Query: 37 LVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSC--RLIGRRFRLAHVVFGR---EII 91
+ GGAVRDLL G P+D D AT ATP Q+K++F+S R+I R + R E
Sbjct: 32 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 91
Query: 92 EVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVG 151
E+ T R + E+E + DA RRD T N+++ D ++ DY
Sbjct: 92 EITTLRIDVTTDGRHAEVE--------FTTDWQKDAERRDLTINSMFLGF-DGTLFDYFN 142
Query: 152 GFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRL---AVKLGFEIEAGTAEPISRMAGLLA 208
G+ED++++ +R +G +R QED +R+LR R V + + T E I+ A LA
Sbjct: 143 GYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLA 202
Query: 209 DVAPARLFEEVLKLFLSGH 227
++ R++ E+ K+ + H
Sbjct: 203 GISGERIWVELKKILVGNH 221
>gi|4204222|dbj|BAA74513| (AB022867) polyA polymerase [Prevotella
ruminicola]
Length = 479
Score = 88.2 bits (215), Expect = 1e-16
Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 25/241 (10%)
Query: 24 VLYRLREA----GFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRR- 78
+ +++ EA G Y+VGG VRD+ + D D+ + ++ + + R++G++
Sbjct: 17 IFHQISEAADRLGLECYVVGGYVRDIFLERPSNDIDVVVVGSGIKVAEELK--RIVGKKA 74
Query: 79 -------FRLAHVVFGRE--IIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATR 129
F A V F ++ EV A + S D + + +N GT+EDD R
Sbjct: 75 HLSVFKNFGTAQVKFWQKGTEYEVEFVGARKESYSHDSR----KPIVEN--GTLEDDQNR 128
Query: 130 RDFTCNALYYTI--EDFS-VRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAV 186
RDFT NA+ + E F + D G D++ ++ +P + +DP+RM+R +R A
Sbjct: 129 RDFTINAMAICLNKERFGELVDPFNGLADLEDGIIATPLEPGITFSDDPLRMMRCIRFAT 188
Query: 187 KLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFP 246
+L F+IE T + RMA + V+ R+ +E+ K+ LS F L+ GL++++ P
Sbjct: 189 QLNFQIEEETFVALERMADRIKIVSGERIKDELNKIILSKTPSRGFVDLQRCGLLNIILP 248
Query: 247 E 247
E
Sbjct: 249 E 249
>gi|2313761|gb|AAD07702.1| (AE000578) poly(A) polymerase (papS)
[Helicobacter pylori 26695]
Length = 402
Score = 84.7 bits (206), Expect = 1e-15
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 21/202 (10%)
Query: 36 YLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHV---------VF 86
YLVGG VRD L+G PKD+DL ++A + K+L L+ R FR+ +
Sbjct: 23 YLVGGCVRDYLMGITPKDYDLTSNALVNESKEL-----LLKRHFRVLETGIKHGTITALK 77
Query: 87 GREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFSV 146
+ E+ TFR G + + + +V+ T DD RRDF+ NA+ Y+ +
Sbjct: 78 NHQSYEITTFRIEK----GHIKHRKPKELVFSVHLT--DDLKRRDFSMNAIAYSPTKGLI 131
Query: 147 RDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGL 206
D G ++++++ +G+ R+ ED +R+LR++R + LGF+I T E + L
Sbjct: 132 -DPFKGQNAIENQMIECVGEARLRFFEDALRILRSLRFSATLGFKIAPNTKEAVFACKDL 190
Query: 207 LADVAPARLFEEVLKLFLSGHA 228
L ++ RL E+ KL + +A
Sbjct: 191 LKHLSKERLQSELNKLLMGKNA 212
>gi|115939|sp|P06961|CCA_ECOLI TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|67073|pir||RNECTA tRNA
adenylyltransferase (EC 2.7.7.25) - Escherichia coli
>gi|145468 (M12788) tRNA nucleotidyltransferase
[Escherichia coli] >gi|882578 (U28379) CG Site No. 933
[Escherichia coli] >gi|1789436 (AE000387) tRNA
nucleotidyl transferase [Escherichia coli]
Length = 412
Score = 84.3 bits (205), Expect = 2e-15
Identities = 74/218 (33%), Positives = 106/218 (47%), Gaps = 18/218 (8%)
Query: 36 YLVGGAVRDLLVGGHPKDFD-LATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVA 94
YLVGGAVRD L+G KD D + +TP+++ L + +GR F + + + E A
Sbjct: 4 YLVGGAVRDALLGLPVKDRDWVVVGSTPQEM--LDAGYQQVGRDFPV--FLHPQTHEEYA 59
Query: 95 TFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFE 154
R GSG G T+EDD RRD T NAL ++ + D G
Sbjct: 60 LARTERKSGSG----YTGFTCYAAPDVTLEDDLKRRDLTINALAQD-DNGEIIDPYNGLG 114
Query: 155 DVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVK---LGFEIEAGTAEPISRM--AGLLAD 209
D+Q+RL+R + + EDP+R+LR R A + LGF I T + M AG L
Sbjct: 115 DLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEH 171
Query: 210 VAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPE 247
+ P R+++E + + F+ L D G + VLFPE
Sbjct: 172 LTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPE 209
>gi|2983086 (AE000689) poly A polymerase [Aquifex aeolicus]
Length = 824
Score = 84.3 bits (205), Expect = 2e-15
Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 29/275 (10%)
Query: 29 REAGFGAYLVGGAVRDLLVGGHPKDFDLATDATP-EQIKQLFRSCRLIGR---RFRLAHV 84
+E G AY+VGG VRD+L+G D D + E K+L R + F AH+
Sbjct: 448 KEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHL 507
Query: 85 VFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTI--E 142
G+ +E AT R + G ++++D RRDFT NA+ ++ E
Sbjct: 508 KIGKLKLEFATARRETYPRPGAYPKVEP--------ASLKEDLIRRDFTINAMAISVNLE 559
Query: 143 DF-SVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPIS 201
D+ ++ DY GG D++ +++R++ PV + EDPVR+LRA+R A +L F++ T + +
Sbjct: 560 DYGTLIDYFGGLRDLKDKVIRVL-HPV-SFIEDPVRILRALRFAGRLNFKLSRSTEKLLK 617
Query: 202 RMA--GLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVL---FPESAKALRANR 256
+ GLL + RL E+ + E + +++ + F + K L+ +
Sbjct: 618 QAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQ--K 675
Query: 257 SGALRRVLIEGLHSTDKRVIKEEPVSPAFLFALLL 291
ALR+V+ H+ + EE + +L+ L+L
Sbjct: 676 LYALRKVV--DWHALE---FSEERIDYGWLYLLIL 705
>gi|3860586|emb|CAA14487| (AJ235270) POLY(A) POLYMERASE (pcnB)
[Rickettsia prowazekii]
Length = 387
Score = 83.1 bits (202), Expect = 4e-15
Identities = 59/214 (27%), Positives = 99/214 (45%), Gaps = 14/214 (6%)
Query: 37 LVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRL----IGRRFRLAHVVFGREIIE 92
L+GG VRD L+ D D+AT+ P + + S + G +F + E E
Sbjct: 30 LIGGCVRDALLDKDTYDIDIATNLMPGEAINILSSANIKIIPTGLKFGTITAILNNEKFE 89
Query: 93 VATFRANSDDGSGDRELE-NGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVG 151
+ T R +++E NGR +DA RRDFT NAL Y + DY
Sbjct: 90 ITTLR---------KDIECNGRHAKVIFSKDFAEDAARRDFTINALSYCPFKNEIYDYFD 140
Query: 152 GFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGLLADVA 211
GF+D+Q + IG R +ED +R+LR R + +++ + + + L ++
Sbjct: 141 GFKDLQRAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQLDYESFKACDTLKYGLKTLS 200
Query: 212 PARLFEEVLKLFLSGHAVASFEALEDFGLIDVLF 245
R+ E+ K+ +S A EA+ G+++++F
Sbjct: 201 RERIKSEIDKIIVSKRATQILEAMFKIGILELIF 234
>gi|6760461|gb|AAF28362.1|AF224467_1 (AF224467) tRNA
nucleotidyltransferase [Haemophilus ducreyi]
Length = 412
Score = 81.5 bits (198), Expect = 1e-14
Identities = 96/325 (29%), Positives = 140/325 (42%), Gaps = 31/325 (9%)
Query: 36 YLVGGAVRDLLVGGHPKDFD-LATDATPEQIKQLFRSCRLIGRRFRL-AHVVFGREIIEV 93
YLVGGAVRD L+ KD D L AT +++ + + + +G F + H V +E
Sbjct: 4 YLVGGAVRDQLLNLPIKDRDFLVVGATAKEL--INQGYQQVGADFPVFLHPVTQQEY--- 58
Query: 94 ATFRANSDDGSGDRELENGRLVCD---NVYGTIEDDATRRDFTCNALYYTIEDFSVRDYV 150
A R G+G VCD NV T+E D RRD T NA+ + + D
Sbjct: 59 ALARQERKSGTGYTGF-----VCDFSPNV--TLEQDLIRRDLTINAMAQDLTSGQIFDPF 111
Query: 151 GGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVK---LGFEIEAGTAEPISRM--AG 205
GG D+ +RL+R I D + EDP+R+LR R A + LGF I T E + +M G
Sbjct: 112 GGKTDLANRLLRHISD---AFAEDPLRVLRVARFAARFHHLGFSIAEQTLELMQKMTACG 168
Query: 206 LLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSGALRRVLI 265
L + R++ E K + F+ L + +LFPE + +S
Sbjct: 169 ELNHLTAERIWRETEKALHTESPHIYFQVLRKVNALAILFPEIDQLFGQIQSVKYHLETD 228
Query: 266 EGLHSTDKRVIKEEPVSPAFLFALLLWPGFCHAL-VTLQLQGVQPEEAQRRAADRVTLHH 324
G H+ + V A LLW CH L L + P Q H
Sbjct: 229 RGQHTLLALQQAKLLVKQAHNPTALLWAVLCHDLGKDLISAEMLPHHYQPNVTGIQLTHQ 288
Query: 325 L-ERVALPRRFSLPMQEIWLLQNRF 348
L +R+ +P ++E+ LL N++
Sbjct: 289 LADRLKVP----TAVKELALLVNKY 309
>gi|4155144 (AE001491) POLYNUCLEOTIDE ADENYLYLTRANSFERASE
[Helicobacter pylori J99]
Length = 402
Score = 80.8 bits (196), Expect = 2e-14
Identities = 63/212 (29%), Positives = 105/212 (48%), Gaps = 12/212 (5%)
Query: 22 LRVLYRLREAG-FGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLF--RSCRLI--G 76
L+ L+ + E + YLVGG +RD L+G PKD+DL ++A + K+L R++ G
Sbjct: 8 LKELFDIYEKSPYELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHDFRVLETG 67
Query: 77 RRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNA 136
+ + + E+ TFR + E LV + DD RRDF+ NA
Sbjct: 68 IKHGTITALKNHQSYEITTFRMEKGHIKHRKPKE---LVFS---ARLTDDLKRRDFSMNA 121
Query: 137 LYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGT 196
+ Y+ + D G ++++ + +G+ R+ ED +R+LRA+R + LGF+I A T
Sbjct: 122 IAYSPTKGLI-DPFKGQNAIENQTIECVGEARLRFFEDALRILRALRFSATLGFKIAAST 180
Query: 197 AEPISRMAGLLADVAPARLFEEVLKLFLSGHA 228
+ LL ++ RL E+ KL + +A
Sbjct: 181 KRAVFACKDLLKHLSKERLQSELNKLLMGKNA 212
>gi|3877673|emb|CAB02125.1| (Z79757) Similar to B.subtilis Poly(A)
polymerase (SW:PAPS_BACSU) [Caenorhabditis elegans]
Length = 440
Score = 79.6 bits (193), Expect = 5e-14
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 20/235 (8%)
Query: 18 SPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGR 77
+P L++ + + + GGAVRDLL+ P D D A+ ATP Q+K L I +
Sbjct: 10 TPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQMKVLI--VFQISK 67
Query: 78 RFRLAHVVFGREIIEVATFRANSD-------DGSGDRELENGR--LVCDNVYGTIED--- 125
+ +F + I + R D + E+ R +VCD +E
Sbjct: 68 KIYFIQEMFEEDKIRMLHKRGEEHGTITCRIDDCENFEITTLRVDIVCDGRRAQVEYTTD 127
Query: 126 ---DATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAV 182
DA RRD T N+L+ + +V DY GG D+++R + +GD +R QED +R+LR
Sbjct: 128 WQLDANRRDLTINSLFLDLHG-NVVDYFGGIRDIETRRIAFVGDARQRIQEDYLRILRYF 186
Query: 183 RLAVKLG--FEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEAL 235
R ++ E E T + I +A ++ R++ E+ K+ + A +A+
Sbjct: 187 RFFGRISDCTEHEHDTIQAIVENKDGMAGISAERIWTELKKIVVGRMADEVLKAM 241
>gi|1168822|sp|P45269|CCA_HAEIN TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|1075396|pir||B64132 tRNA
nucleotidyltransferase (cca) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1574448 (U32834) tRNA
nucleotidyltransferase (cca) [Haemophilus influenzae Rd]
Length = 416
Score = 76.9 bits (186), Expect = 3e-13
Identities = 72/220 (32%), Positives = 109/220 (48%), Gaps = 22/220 (10%)
Query: 36 YLVGGAVRDLLVGGHPKDFD-LATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVA 94
YLVGGAVRD L+G KD D + A P + L + +G+ F + +E +A
Sbjct: 4 YLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSL--GYQQVGKDFPVFLNPKTKEEYALA 61
Query: 95 -TFRANSDDGSGDRELENGRLVCD-NVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGG 152
T R +S +G +CD + T+E D RRD T NA+ + ED + D GG
Sbjct: 62 RTERKSSAGYTG--------FICDFSPTITLEQDLIRRDLTINAMAQS-EDGEIIDPYGG 112
Query: 153 FEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVK---LGFEIEAGTAEPISRMA--GLL 207
+D+++R++R I + EDP+R+LR R A + LGF+I + T ++ +A G L
Sbjct: 113 KQDLENRILRHISP---AFSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGEL 169
Query: 208 ADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPE 247
+ R++ E K + FE L G + VLF E
Sbjct: 170 QHLTAERIWLETEKALNEKNPEIYFETLHKTGALSVLFSE 209
>gi|559391|emb|CAA57198| (X81440) ORFIII [Acidaminococcus
fermentans]
Length = 256
Score = 76.1 bits (184), Expect = 5e-13
Identities = 55/173 (31%), Positives = 84/173 (47%), Gaps = 13/173 (7%)
Query: 93 VATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGG 152
+A +R N GSGD + C T+E+D +RRDFT NAL E + D G
Sbjct: 1 MAAYR-NETYGSGDAHRPSEVWYCK----TLEEDLSRRDFTINALAVDQEGH-ITDCFHG 54
Query: 153 FEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGLLADVAP 212
+D++ R++R +GDP RR+ ED +RM RA R +LGF + I R + ++
Sbjct: 55 LDDLRGRVLRTVGDPDRRFSEDALRMFRACRFVGQLGFAPDPAILPAIGRNLQKVPGLSL 114
Query: 213 ARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSGALRRVLI 265
R+ E+ KL + +A + + GL +A++ R R G V I
Sbjct: 115 ERVRTELNKLLMGTYAGEGMDLMVKSGL-------AAESCRVRRKGQYETVPI 160
>gi|4981239|gb|AAD35797.1|AE001742_12 (AE001742) tRNA nucleotidyl
transferase-related protein [Thermotoga maritima]
Length = 863
Score = 73.7 bits (178), Expect = 3e-12
Identities = 66/230 (28%), Positives = 107/230 (45%), Gaps = 22/230 (9%)
Query: 30 EAGFGAYLVGGAVRDLLVGGHPKDFDLATDAT----PEQIKQLFRSCRLIGRRFRLAHVV 85
E Y+VGG VRDLL+G D D+ + E K+ + +F A +
Sbjct: 467 EVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLF 526
Query: 86 F-GREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTI--E 142
G I++AT R E+ + D TI+ D RRDFT NA+ + +
Sbjct: 527 LKGGLRIDIATARL--------EYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPK 578
Query: 143 DFSVR-DYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPIS 201
DF + D+ GG+ D++ ++R++ + +DP R+LRA+R + F IE T E +
Sbjct: 579 DFGLLIDFFGGYRDLKEGVIRVL--HTLSFVDDPTRILRAIRFEQRFDFRIEE-TTERLL 635
Query: 202 RMA---GLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPES 248
+ A G L RL +E+ K+ + + S + F +I LFP++
Sbjct: 636 KQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKT 685
>gi|4455659|emb|CAB36624.1| (AL034390) possible tRNA
nucleotidyltransferase precursor [Leishmania major]
Length = 523
Score = 71.0 bits (171), Expect = 2e-11
Identities = 63/215 (29%), Positives = 99/215 (45%), Gaps = 27/215 (12%)
Query: 37 LVGGAVRDLLVGGHPKDFDLA--TDATPEQIKQLFRSCRLIGRRFRLAHVVFGREI---- 90
+ GG VRD+L+G H D D+A T A + + + R+ ++LAH G +
Sbjct: 38 VAGGWVRDMLLGLHSNDIDIAIETHAGAKIVTGEAFAHRV--SEYQLAHGGRGHTVSVIR 95
Query: 91 --------IEVATFRANSDDGS-----GDRELENGRLVCDNVYGTIEDDATRRDFTCNAL 137
IE AT R + D R+ +ED A RRDFT NAL
Sbjct: 96 ANPALSKHIETATVRVHEIPVELCALRTDVYTNESRIPQVRPAAPVED-AQRRDFTINAL 154
Query: 138 YYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLG---FEIEA 194
+Y + V DY G ED++ R++R +P + +DP+R+LR VR +LG F ++
Sbjct: 155 FYNLHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPLRLLRGVRFVGQLGALNFSLDE 214
Query: 195 GTAEPI--SRMAGLLADVAPARLFEEVLKLFLSGH 227
+ S + L V+ R+ +E +K+ + H
Sbjct: 215 SITSCVDDSLLQVLQQKVSRERVGKEFVKMMAAAH 249
>gi|6458932|gb|AAF10763.1|AE001968_2 (AE001968) tRNA
nucleotidyltransferase/poly A polymerase family protein
[Deinococcus radiodurans]
Length = 434
Score = 70.2 bits (169), Expect = 3e-11
Identities = 82/311 (26%), Positives = 126/311 (40%), Gaps = 41/311 (13%)
Query: 34 GAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEV 93
GA LVGGAVRD L G D+D A + L + + G F L
Sbjct: 14 GAALVGGAVRDWLRGVRSADYDWAHPDPAAGARAL--AALVGGAAFPL------------ 59
Query: 94 ATFRANSDDGSGDRELENGRLVCDNVY--GTIEDDATRRDFTCNALYYTIEDFSVRDYVG 151
D+ G + G + D V +EDD RRDFT NA+ E + D +G
Sbjct: 60 -------DEERGYWRVTAGEVQHDFVPLPPNLEDDLRRRDFTVNAIALR-EGRRLVDPLG 111
Query: 152 GFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRM-----AGL 206
G +D++ R++R++ + + DP+R RA R L F +E T + + ++ AG
Sbjct: 112 GQQDLKRRVLRMVSED--NLRADPLRAWRAARFVTTLSFTLEPQTEQAVRQVAADLKAGR 169
Query: 207 LADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSGALRRVLIE 266
L A R+ +E+ L S A LE GL+D+ PE + + G + E
Sbjct: 170 LPFPAWERVRDELHALLRSPDAARGILTLEALGLLDLTLPELREGQGLTQGGFHHLDVFE 229
Query: 267 GLHSTDKRVIKEEPVSPAFLFALLLWPGFCHALVTLQLQGVQPEEAQR------RAADRV 320
+++ P + LL W H + + P+ +R R +
Sbjct: 230 HGVEALHQLLTRRPDAD----LLLRWATLLHDVGKPRTFARDPDTGRRSFHGHDRVGAEL 285
Query: 321 TLHHLERVALP 331
T L R+ LP
Sbjct: 286 TTQILTRLKLP 296
>gi|1168821|sp|P45749|CCA_AERHY TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME)
Length = 192
Score = 69.1 bits (166), Expect = 7e-11
Identities = 64/195 (32%), Positives = 95/195 (47%), Gaps = 18/195 (9%)
Query: 36 YLVGGAVRDLLVGGHPKDFD-LATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVA 94
YLVGGAVRD L+G D D L AT EQ+ L +GR F + + + E A
Sbjct: 4 YLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLAL--GFTQVGRDFPV--FLHPKTQQEYA 59
Query: 95 TFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFE 154
R G G G + + T+E D RRD T NA+ E+ + D GG +
Sbjct: 60 LARTERKQGRG----YTGFVCHASPEVTLEQDLLRRDLTVNAIAED-EEGRLHDPYGGIQ 114
Query: 155 DVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKL---GFEIEAGTAEPISRM--AGLLAD 209
D++ R++R + + EDP+R+LR R A + GF + T + M AG LA
Sbjct: 115 DLERRVLRHVSP---AFAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTDAGELAH 171
Query: 210 VAPARLFEEVLKLFL 224
+ P R+++E+ ++ L
Sbjct: 172 LTPERVWKELERVLL 186
>gi|281493|pir||S27736 hypothetical protein B - Thermus aquaticus
>gi|295398 (M33159) ORFB [Thermus thermophilus]
Length = 213
Score = 68.7 bits (165), Expect = 9e-11
Identities = 72/233 (30%), Positives = 100/233 (42%), Gaps = 42/233 (18%)
Query: 38 VGGAVRDLLVGGHPKDFDLAT---DATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVA 94
+GGAVRDLL+G P D D A + E+ K+ RL G F L
Sbjct: 1 MGGAVRDLLLGRRPTDLDYAALDPEGAAEEAKR-----RLGGSLFPL------------- 42
Query: 95 TFRANSDDGSGDRELENGRLVCD--NVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGG 152
D G L G D + G +E+D RRD+ NAL + V G
Sbjct: 43 ------DPKRGHYRLVVGERTLDFTPLEGRLEEDLLRRDYRVNALLWK------GGAVFG 90
Query: 153 FEDVQSRLMRLIGDPVRRYQ--EDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGLL--- 207
+ V+ L R + PVR +D +R LR VRLA LGF + T E + R A L
Sbjct: 91 LKGVEEDLRRRLLVPVREENLYQDHLRSLRGVRLAATLGFGLPQRTREALGRHARFLQAH 150
Query: 208 ADVAPA--RLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKALRANRSG 258
+ PA R+ EE+ +L LS A ++ +G + P S + + R+G
Sbjct: 151 PEALPARERVKEELARLLLSPRAASACAFWRGWGSLGSTSPSSPSSWASIRAG 203
>gi|2984364 (AE000776) poly A polymerase [Aquifex aeolicus]
Length = 512
Score = 67.9 bits (163), Expect = 2e-10
Identities = 65/285 (22%), Positives = 119/285 (40%), Gaps = 41/285 (14%)
Query: 4 VVPRGHHTISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVG---GHPKDFDLATDA 60
+V G HT+ + + + ++ ++VGG VRD ++G G+ D D T A
Sbjct: 6 IVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTA 65
Query: 61 TPEQIKQLFRSCRLIG-------RRFRLAHVVFGREIIEVATFRANSDDGS-GDRELENG 112
P ++ + F R+ G R F + ++ + +R D ++LE
Sbjct: 66 DPVELAKNFAK-RIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKA 124
Query: 113 RLVCDNVYGTIEDDATRRDFTCNALYYTIEDFS--------VRDYVGGFEDVQSRLMRLI 164
+ +D RDFT NA+ ++D V D GG +D++ L+R +
Sbjct: 125 LI----------EDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPV 174
Query: 165 GDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFL 224
+ + DPVR+LR R+A++ ++ E + ++ A R+ E+ K+
Sbjct: 175 S--IENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMK 232
Query: 225 SGHAVASFEALEDFGLIDVLFPESAKALRANRSGALRRVLIEGLH 269
A L ++G+++ + PE G LR V +G H
Sbjct: 233 EKTAHKVIRELYEYGVLEAIIPE---------IGRLREVKDQGEH 268
>gi|4539282|emb|CAB39906.1| (AL049498) putative trna
nucleotidyltransferase precursor [Schizosaccharomyces
pombe]
Length = 484
Score = 64.8 bits (155), Expect = 1e-09
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 121 GTIEDDATRRDFTCNALYYTIEDFSVRDYVG-GFEDVQSRLMRLIGDPVRRYQEDPVRML 179
GT+E DA RRDFT N L++ I + D G++D+Q++++ P++ + EDP+R+L
Sbjct: 138 GTVETDALRRDFTVNTLFFNIRTEKIEDITKRGYKDLQTKVLVTPISPLQSFLEDPLRIL 197
Query: 180 RAVRLAVKLGFEIEAGTAEPISRMAGLLA---DVAPARLFEEVLKLFLSGHAVASFEALE 236
R +R A + F I+ I A V+ R+ EE+ K+ +A + + L
Sbjct: 198 RGIRFASRFEFTIDPSVVSAIQDPKVCKAFEKKVSKERVGEEIEKMLKGANAKLALQLLY 257
Query: 237 DFGLIDVLFP--------ESAKALRANRSGALRRVLIEGLHSTDKRVIK---EEPVSPAF 285
F + KAL A S L + L T +++K +E +
Sbjct: 258 STNTYQFTFDTLPAEKEFQIPKALEATES------LFQSLALTFPKLMKLSEDEKIGLWL 311
Query: 286 LFALLLW 292
AL+ W
Sbjct: 312 YVALIPW 318
>gi|3287692 (AC003979) Similar to tRNA adenylyltransferase gb|U15930
from Lupinus albus. EST gb|AA721797 comes from this
gene. [Arabidopsis thaliana]
Length = 555
Score = 63.6 bits (152), Expect = 3e-09
Identities = 71/250 (28%), Positives = 110/250 (43%), Gaps = 26/250 (10%)
Query: 23 RVLYRLREAGFGAYL--VGGAVRDLLVGGHPKDFDLATD-ATPEQIKQLFRSCRLIGRRF 79
R+L LR L GG VRD L+G D D+A D + + F+
Sbjct: 96 RLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEE 155
Query: 80 RLAHVVFGR-----EIIEVATFRANSD-----DGSGDRELENGRLVCDNVYGTIEDDATR 129
V R + +E A R + + EN R+ +GT +DDA R
Sbjct: 156 VQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTMK-FGTAKDDAFR 214
Query: 130 RDFTCNALYYTIEDFSVRDYV-GGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKL 188
RD T N+L+Y I +V D G +D++S + + +DP+R+LRAVR +
Sbjct: 215 RDLTINSLFYNINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDDPLRVLRAVRFGARF 274
Query: 189 GFEI-----EAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHA-VASFEALEDFGLID 242
GF + EA ++E + G ++ R+ E+ L +SG+ V++ L D L
Sbjct: 275 GFTLDEELKEAASSEEVRVALG--EKISRERIGNEI-DLMISGNGPVSAVTYLSDLKLFS 331
Query: 243 VLF--PESAK 250
V+F P SA+
Sbjct: 332 VVFALPSSAE 341
>gi|1001282|dbj|BAA10528| (D64003) polyA polymerase [Synechocystis
sp.]
Length = 416
Score = 61.7 bits (147), Expect = 1e-08
Identities = 54/191 (28%), Positives = 86/191 (44%), Gaps = 31/191 (16%)
Query: 35 AYLVGGAVRDLLVGGHPK----DFDLATDA--TPEQIKQLFRSCRLIGRRFR-LAHVVFG 87
A LVGGAVRD L+G + DF + + A T I +R+ ++ + R +A VVF
Sbjct: 26 ACLVGGAVRDALLGRRREYLDWDFVVPSGAIETASAIASRYRAGFVVLDKARHIARVVFA 85
Query: 88 REIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDFSVR 147
++ A S +E D RRDFT NA+ Y + +
Sbjct: 86 HGTVDFAQQEGMS----------------------LEQDLARRDFTVNAIAYNFQQNKLI 123
Query: 148 DYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGLL 207
D + G D+Q ++++ +DP+R+LRA R A +L F ++ T + +A +
Sbjct: 124 DPMAGVGDLQRGQLKMVA--AVNLADDPLRLLRAYRQAAQLQFTLDPDTRTVLRELAPRI 181
Query: 208 ADVAPARLFEE 218
VA R+ E
Sbjct: 182 KTVAAERVQAE 192
>gi|2129851|pir||S65148 tRNA adenylyltransferase (EC 2.7.7.25) -
white lupine >gi|1139585 (U15930) tRNA
nucleotidyltransferase [Lupinus albus]
Length = 560
Score = 60.9 bits (145), Expect = 2e-08
Identities = 53/198 (26%), Positives = 82/198 (40%), Gaps = 40/198 (20%)
Query: 23 RVLYRLREAGFGAYL--VGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRF- 79
R+L LR +L GG VRD L+G D D+A D +++G F
Sbjct: 79 RLLATLRFFNLQTHLRVAGGWVRDKLLGKECYDIDIALD-------------KMMGTEFV 125
Query: 80 ---RLAHVVFGREIIEVATFRANSDDGS--------------------GDRELENGRLVC 116
R + G E V +N D + +N R+
Sbjct: 126 DKVREYLLSIGEEAQGVCVIESNPDQSKHLETARMRLFDMWIDFVNLRSEEYTDNSRIPS 185
Query: 117 DNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYV-GGFEDVQSRLMRLIGDPVRRYQEDP 175
+GT E+DA RRD T N+L+Y I SV D+ G D++S + P + +DP
Sbjct: 186 MQRFGTPEEDAYRRDLTINSLFYNINTDSVEDFTKRGISDLKSGKIVTPLPPKATFLDDP 245
Query: 176 VRMLRAVRLAVKLGFEIE 193
+R++RA+R + F ++
Sbjct: 246 LRVVRAIRFGARFEFTLD 263
>gi|6318263|emb|CAB60249.1| (AL132839) putative tRNA
nucleotidyltransferase precursor [Schizosaccharomyces
pombe]
Length = 534
Score = 59.3 bits (141), Expect = 6e-08
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 119 VYGTIEDDATRRDFTCNALYYTIEDFSVRDYVG-GFEDVQSRLMR--LIGDPVRRYQEDP 175
V+GT +DA RRD T NAL+Y ++ +V D+ G G D+ ++++R L+ D + +DP
Sbjct: 167 VFGTPLEDALRRDATINALFYNLKSKTVEDFTGKGLVDLSNKIIRTPLVAD--ETFGDDP 224
Query: 176 VRMLRAVRLAVKLGFEIEAGTAEPISR---MAGLLADVAPARLFEEVLKLFLSGHAVASF 232
+R +R +R A K F I T + + L + ++ R+ EV K+ + +
Sbjct: 225 LRAVRCIRFATKYDFNIHEETIKGLKNPELHERLRSSISRERIGVEVDKMLKHCNTNRAL 284
Query: 233 EALEDFGLIDVLF 245
+ + G+ +F
Sbjct: 285 KIIHSLGMFACIF 297
>gi|6321016|ref|NP_011095.1|CCA1| tRNA nucleotidyltransferase (tRNA
CCA-pyrophosphorylase); Cca1p
>gi|135969|sp|P21269|CCA1_YEAST TRNA
NUCLEOTIDYLTRANSFERASE PRECURSOR (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|83574|pir||S11180 tRNA
nucleotidyltransferase - yeast (Saccharomyces
cerevisiae) >gi|172994 (M59870) transfer RNA
nucleotidyltransferase [Saccharomyces cerevisiae]
>gi|603409 (U18922) Cca1p: tRNA
nucleotidyltransferase(tRNA CCA-pyrophosphorylase)
[Saccharomyces cerevisiae]
Length = 546
Score = 58.2 bits (138), Expect = 1e-07
Identities = 59/237 (24%), Positives = 104/237 (42%), Gaps = 38/237 (16%)
Query: 37 LVGGAVRDLLVGGHPKDFDLATD-----------------------ATPEQIKQLFRSCR 73
+ GG VRD L+G D D+A + A P I ++ ++
Sbjct: 65 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKNPE 124
Query: 74 LIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFT 133
+FG +EV S+ + EL VC +GT E+DA RRD T
Sbjct: 125 KSKHLETATTKLFG---VEVDFVNLRSEKYT---ELSRIPKVC---FGTPEEDALRRDAT 175
Query: 134 CNALYYTIEDFSVRDYV-GGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGF-- 190
NAL+Y I V D+ G +D++ ++R + + +DP+R+LR +R A + F
Sbjct: 176 LNALFYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNFTI 235
Query: 191 --EIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLF 245
E+ A +P +A + ++ R+ E+ K+ + + + + ++ L +V+F
Sbjct: 236 DPEVMAEMGDPQINVA-FNSKISRERVGVEMEKILVGPTPLLALQLIQRAHLENVIF 291
>gi|6458711|gb|AAF10560.1|AE001950_12 (AE001950) tRNA
nucleotidyltransferase, putative [Deinococcus
radiodurans]
Length = 374
Score = 57.0 bits (135), Expect = 3e-07
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 21/197 (10%)
Query: 37 LVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVATF 96
LVGGAVRD L+G P D D+ Q Q + L + H F + +
Sbjct: 36 LVGGAVRDALLGQTPLDLDIVVAG---QDGQGVEALALASGLPFVFHPAFENATLTLPDG 92
Query: 97 R-ANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFTCNALYYTIEDF---SVRDYVGG 152
R A+ + + GR + + GT+ DD RRDF NAL + + + D VGG
Sbjct: 93 RGADLVRARREHYPQPGRNP-EPLPGTLHDDLRRRDFGLNALALRLREDGAPELLDVVGG 151
Query: 153 FEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGF----EIEAGTAEPISRMAGLLA 208
D++ R +R + D R ED R++RA RLA +L E+ A + ++ LA
Sbjct: 152 LRDLERRELRPLHD--RSLHEDASRLVRAARLAARLELHPAPELLAQVPDALA-----LA 204
Query: 209 DVAPARLFEEVLKLFLS 225
D P RL+ E LKL L+
Sbjct: 205 DDTP-RLWAE-LKLLLA 219
>gi|1653244|dbj|BAA18159| (D90912) polyA polymerase [Synechocystis
sp.]
Length = 942
Score = 56.6 bits (134), Expect = 4e-07
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 44/198 (22%)
Query: 32 GFGAYLVGGAVRDLLVGGHP----------KDFDLATDA------------TPEQIKQLF 69
G+ YLVGGAVRDL + +D DL D + ++ +
Sbjct: 509 GWHLYLVGGAVRDLWLRHSQGAEKHQNITFQDIDLVVDGFHATADVGAGVELAQALQGDY 568
Query: 70 RSCRL-IGRRFRLAHVVFGREI------IEVATFRANSDD-GSGDRELENGRLVCDNVYG 121
RL + F+ A +++ ++ +++AT R + + E+E
Sbjct: 569 PGARLSVHGEFQTAALLWHKDPQLDTLWVDIATARTEFYPYPAANPEVEAS--------- 619
Query: 122 TIEDDATRRDFTCNALYYTIEDFS---VRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRM 178
+I D RRDFT NAL + + + + D+ GG D+QS+ +R++ + EDP R+
Sbjct: 620 SIRQDLYRRDFTINALSIRLTNPNPGKLLDFFGGMNDLQSQQVRVLH--ANSFIEDPTRI 677
Query: 179 LRAVRLAVKLGFEIEAGT 196
RAVR V+LGFE+E T
Sbjct: 678 YRAVRFVVRLGFELEPQT 695
>gi|421154|pir||A46418 poly(A) polymerase - Escherichia coli
(fragment) >gi|259663|bbs|117868 (S48039) poly(A)
polymerase {N-terminal} [Escherichia coli, Peptide
Partial, 71 aa] [Escherichia coli]
Length = 71
Score = 49.6 bits (116), Expect = 5e-05
Identities = 22/34 (64%), Positives = 28/34 (81%)
Query: 4 VVPRGHHTISRKDISPNALRVLYRLREAGFGAYL 37
V+PR H ISRKDIS NAL+V+YRL +AG+ A+L
Sbjct: 38 VIPREQHAISRKDISENALKVMYRLNKAGYEAWL 71
>gi|2146782|pir||S65142 tRNA nucleotidyltransferase (EC 2.7.7.25) -
white lupine (fragments)
Length = 33
Score = 37.1 bits (84), Expect = 0.28
Identities = 16/30 (53%), Positives = 21/30 (69%)
Query: 120 YGTIEDDATRRDFTCNALYYTIEDFSVRDY 149
+GT E+DA RRD T N+L+Y I SV D+
Sbjct: 1 FGTPEEDAYRRDLTINSLFYNINTDSVEDF 30
>gi|6460273|gb|AAF11997.1|AE002075_1 (AE002075) cation-transporting
ATPase [Deinococcus radiodurans]
Length = 847
Score = 34.8 bits (78), Expect = 1.4
Identities = 29/94 (30%), Positives = 44/94 (45%), Gaps = 5/94 (5%)
Query: 142 EDFSVRDYVGGFEDVQSRLMRLIG--DPVRRYQEDPVRMLRAVRLAVKLGFEIEAGTAEP 199
++ + R F V +L L+G DP+R + +R L A L V + TAE
Sbjct: 633 DELAARARTPVFAAVDGQLAGLLGVADPIREGSAEAIRTLTAQGLDVAMVTGDARATAEA 692
Query: 200 ISRMAG---LLADVAPARLFEEVLKLFLSGHAVA 230
++R AG +LA+V P + V +L G VA
Sbjct: 693 VAREAGVNRVLAEVLPEGKAQAVAELQQCGQRVA 726
>gi|3191978|emb|CAA19377| (AL023797) putative protein pII
uridylyltransferase [Streptomyces coelicolor]
Length = 835
Score = 34.4 bits (77), Expect = 1.8
Identities = 25/79 (31%), Positives = 36/79 (44%), Gaps = 1/79 (1%)
Query: 170 RYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGH-A 228
R + DP LRA A + G + ++ A L PA E+++ L SG
Sbjct: 335 RPERDPALPLRAAAAAAQAGLPLSRHAVRRLAATARPLPTPWPAEAREQLVTLLGSGRPT 394
Query: 229 VASFEALEDFGLIDVLFPE 247
V +EALE GL+ L P+
Sbjct: 395 VQVWEALEAEGLVTRLLPD 413
>gi|3913200|sp|Q47907|CCA_FRANO TRNA NUCLEOTIDYLTRANSFERASE (TRNA
ADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)
(CCA-ADDING ENZYME) >gi|930293|gb|AAD15236| (L17003)
cca gene product [Francisella tularensis (var.
novicida)]
Length = 84
Score = 33.6 bits (75), Expect = 3.2
Identities = 17/31 (54%), Positives = 23/31 (73%), Gaps = 1/31 (3%)
Query: 36 YLVGGAVRDLLVGGHPKDFD-LATDATPEQI 65
YLVGGAVRD+L+G PKD D + AT +++
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATEDEM 34
>gi|3294243|emb|CAA19856| (AL031031) hypothetical protein SC7C7.10
[Streptomyces coelicolor]
Length = 126
Score = 33.2 bits (74), Expect = 4.1
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 160 LMRLIGDPVRRYQEDPVRMLRAVRLA--VKLGF--EIEAGTAEPISRMAGLLADVAPARL 215
L RL+GD +RR ++ R LR V + V LG+ E+E G E S + + D R+
Sbjct: 4 LRRLLGDVLRRQRQRQGRTLREVSSSARVSLGYLSEVERGQKEASSELLSAICDALDVRM 63
Query: 216 FE 217
E
Sbjct: 64 SE 65
>gi|548757|sp|P36248|RL1_CGDAB 50S RIBOSOMAL PROTEIN L1 >gi|144457
(M94319) ribosomal protein L1 [Citrus greening
disease-associated bacterium-like organism]
>gi|739024|prf||2002224C ribosomal protein L1 [Citrus
greening disease-associated bacterium]
Length = 232
Score = 32.5 bits (72), Expect = 7.1
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 29 REAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHVVFGR 88
REAG A +VGG +V G DFD ATP+ + + R R++G R + ++ G
Sbjct: 89 REAG--ADIVGGEDLFEIVKGGQIDFDRCI-ATPDMMPLVGRLGRILGPRGIMPNLRVGT 145
Query: 89 EIIEVATFRANSDDGSGDRELENGRLV 115
+VAT S G+ D E ++
Sbjct: 146 VTTDVATAVRESKSGAVDFRSEKAGII 172
>gi|6714746|emb|CAB66211.1| (AL136502) putative ABC transporter,
ATP-binding component (fragment). [Streptomyces
coelicolor A3(2)]
Length = 434
Score = 32.5 bits (72), Expect = 7.1
Identities = 19/68 (27%), Positives = 33/68 (47%)
Query: 340 EIWLLQNRFISRQPKRVLRLLEHPRFRAAFDFLVVRLAASAEHAADVEFWRVAQQQPSED 399
++ + +N F+ RQP+R L ++H A L++RL + +A QQ E
Sbjct: 30 DLSIAENIFMGRQPRRALGRIDHKATHDATAALMLRLGVELDPDRPARGLSIADQQIVEI 89
Query: 400 SLASAIDA 407
+ A + DA
Sbjct: 90 AKALSFDA 97
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.325 0.141 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108507236
Number of Sequences: 449381
Number of extensions: 4428520
Number of successful extensions: 11399
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 11272
Number of HSP's gapped (non-prelim): 67
length of query: 421
length of database: 138,416,789
effective HSP length: 54
effective length of query: 367
effective length of database: 114,150,215
effective search space: 41893128905
effective search space used: 41893128905
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 71 (32.1 bits)