BLASTP 2.0.10 [Aug-26-1999] 

Query= XF-07H04-GL13
         (286 letters)

Database: nr
           449,381 sequences; 138,416,789 total letters

Graphical Overview:

                                                                Score     E
Sequences producing significant alignments:                     (bits)  Value

gi|5104633|dbj|BAA79948.1| (AP000060) 311aa long hypothetical p...   140    2e-32
gi|3257442|dbj|BAA30125| (AP000004) 281aa long hypothetical pro...   138    6e-32
gi|5458376|emb|CAB49864.1| (AJ248286) hypothetical protein [Pyr...   136    3e-31
gi|2128739|pir||H64453 hypothetical protein MJ1233 - Methanococ...   136    3e-31
gi|4753879|emb|CAB42042.1| (AL049754) putative spermidine synth...    39    0.062
gi|1730925|sp|P54171|YPIP_BACSU HYPOTHETICAL 19.0 KD PROTEIN IN...    38    0.11
gi|3261489|emb|CAA15488| (AL008687) speE [Mycobacterium tubercu...    35    0.92
gi|3183237|sp|P87177|YB1C_SCHPO HYPOTHETICAL 103.4 KD TRP-ASP R...    35    0.92
gi|2305234 (AF011895) adenine DNA methyltransferase [Brucella a...    35    0.92
gi|2791628|emb|CAA16115.1| (AL021287) hypothetical protein Rv30...    34    2.1
gi|5051814|emb|CAB45043.1| (AL078635) putative rRNA methylase [...    34    2.1
gi|5106170|dbj|BAA81481.1| (AP000064) 420aa long hypothetical f...    33    2.7
gi|1871597|emb|CAB06991| (Z92669) hypothetical protein Rv0224c ...    33    3.5
gi|2622309 (AE000888) met-10+ related protein [Methanobacterium...    33    3.5
gi|6094330|sp|O48659|SPE2_HYONI SPERMIDINE SYNTHASE 2 (PUTRESCI...    32    4.6
gi|1073062|pir||B55523 ferredoxin reductase - Pseudomonas sp. (...    32    8.0
gi|98078|pir||S12697 site-specific DNA-methyltransferase (cytos...    32    8.0
gi|282344|pir||S26843 site-specific DNA-methyltransferase BamHI...    32    8.0

>gi|5104633|dbj|BAA79948.1| (AP000060) 311aa long hypothetical
           protein [Aeropyrum pernix]
           Length = 311
           
 Score =  140 bits (349), Expect = 2e-32
 Identities = 78/190 (41%), Positives = 111/190 (58%), Gaps = 7/190 (3%)

Query: 86  FSGSLIKLVPTPWGVP-TFEIDGIKMLPSLRVSPFEDARRKVALVRPQGKTVLDTCGGLG 144
           + GS  KLVP P G P T EI+GI M       P+ DA  K +LV  +G  VLDTC GLG
Sbjct: 111 YRGSYYKLVPLPGGKPPTLEINGIHMHRVAGTDPWSDALAKASLVVKRGFRVLDTCTGLG 170

Query: 145 YFAACCLEAGAIHIRSFEKNPDVLWLRTLNPWSPNPQAIQANQRLELVGGDIAQAIEDLP 204
           Y +   +  GA  + + E +  VL L  LNPWS   +    ++R+ ++ GD  + + D  
Sbjct: 171 YTSIAAIARGASLVYTVEVDEIVLQLAALNPWSHRLR----DKRIRIILGDAVEVVRDFG 226

Query: 205 DASVDAILHDPPRFS-IAGELYALRFYDQLARVLCRDGQMFHYTGTPTQLSHGRDVPREI 263
           D++ DA++HDPPRFS     LY L  Y +  R+L R G++FHYTG P ++  G ++P  +
Sbjct: 227 DSAFDALIHDPPRFSKSTSSLYTLELYREFHRILRRGGRLFHYTGEPGRI-RGLNLPGRV 285

Query: 264 ARRLEQAGFQ 273
           AR L +AGF+
Sbjct: 286 ARLLREAGFE 295


>gi|3257442|dbj|BAA30125| (AP000004) 281aa long hypothetical protein
           [Pyrococcus horikoshii]
           Length = 281
           
 Score =  138 bits (344), Expect = 6e-32
 Identities = 88/248 (35%), Positives = 136/248 (54%), Gaps = 22/248 (8%)

Query: 37  SLDLGRTHTQVRIATDAWHAKTHTYPYPNRLKDRTI-----------YYWDGQNFTAISR 85
           ++DL +T  ++R+     + +   +P  +R+K   I           +  DG+ F A   
Sbjct: 24  NVDLMKTGKKIRVRVSKDYVE---FPDGSRVKKEIIKRIAEDEGNVYFVRDGEVFKAAIA 80

Query: 86  FSGSLIKLVPTPWGVPTFEIDGIKMLPSLRVSPFEDARRKVALVRP-QGKTVLDTCGGLG 144
                 KLVPT    PT EI+GI+M  +    P +D   KV  V+P +G+ VLDTC GLG
Sbjct: 81  -GEHFYKLVPTI--PPTIEINGIRMHRTKGTDPLKDTIAKVNTVKPREGEVVLDTCMGLG 137

Query: 145 YFAACCLEAGAIHIRSFEKNPDVLWLRTLNPWSPNPQAIQANQRLELVGGDIAQAIEDLP 204
           Y A    + GA  + + EK+P+V+ L  +NPWS   + +  + +++++ GD    I+   
Sbjct: 138 YTAIESAKRGA-RVITIEKDPNVIELAKINPWS---RELFESPKIKILQGDSFDLIKKFE 193

Query: 205 DASVDAILHDPPRFSIAGELYALRFYDQLARVLCRDGQMFHYTGTPTQLSHGRDVPREIA 264
           D S D I+HDPPRFS+AGELY+  FY ++ RVL   G++FHY G P +   G D+ + + 
Sbjct: 194 DESFDVIIHDPPRFSLAGELYSEEFYMEMFRVLKPGGRLFHYVGNPGKRYRGLDLQKGVM 253

Query: 265 RRLEQAGF 272
            RL + GF
Sbjct: 254 ERLRRVGF 261


>gi|5458376|emb|CAB49864.1| (AJ248286) hypothetical protein
           [Pyrococcus abyssi]
           Length = 285
           
 Score =  136 bits (338), Expect = 3e-31
 Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 9/204 (4%)

Query: 71  TIYYW-DGQNFTAISRFSGSLIKLVPTPWGVPTFEIDGIKMLPSLRVSPFEDARRKVALV 129
           T+Y++ DG+ + A         KLVPT    PT EIDGI+M  +    P  D   KV  V
Sbjct: 66  TVYFFKDGELYKAAIA-GEHFYKLVPTI--PPTIEIDGIRMHRTKDTDPLRDTLAKVETV 122

Query: 130 RPQ-GKTVLDTCGGLGYFAACCLEAGAIHIRSFEKNPDVLWLRTLNPWSPNPQAIQANQR 188
           +P+ G+ VLDTC GLGY A      GA  + + EK+ +V+ L  +NPWS   + +     
Sbjct: 123 KPRRGENVLDTCMGLGYTAIESARRGAF-VLTIEKDKNVIELAKINPWS---RELFEWPN 178

Query: 189 LELVGGDIAQAIEDLPDASVDAILHDPPRFSIAGELYALRFYDQLARVLCRDGQMFHYTG 248
           ++++ GD  + +++  + S D I+HDPPRFS+AGELY+  FY++L R+L   G++FHY G
Sbjct: 179 IKVIHGDSYELVKNFDNESFDVIIHDPPRFSLAGELYSREFYEELYRILKPGGRLFHYVG 238

Query: 249 TPTQLSHGRDVPREIARRLEQAGF 272
            P +    +D+ R +  RL   GF
Sbjct: 239 NPGKKYRRKDMQRGVMERLRSVGF 262


>gi|2128739|pir||H64453 hypothetical protein MJ1233 - Methanococcus
           jannaschii >gi|1591865 (U67564) M. jannaschii predicted
           coding region MJ1233 [Methanococcus jannaschii]
           Length = 288
           
 Score =  136 bits (338), Expect = 3e-31
 Identities = 90/247 (36%), Positives = 131/247 (52%), Gaps = 20/247 (8%)

Query: 37  SLDLGRTHTQVRIATDAWHAKTHTYP--------YPNRLKDRTIYYW--DGQNFTAISRF 86
           +LDL +T  + +I  D    K   +P             KD    Y+  DG+ F A    
Sbjct: 32  NLDLNKTEKKEKILIDR-EKKIAKFPEGDVSFDILKKIAKDEGHIYFIKDGEVFKAAISN 90

Query: 87  SGSLIKLVPTPWGVPTFEIDGIKMLPSLRVSPFEDARRKVALVR-PQGKTVLDTCGGLGY 145
           +G   KLVPT    PT EI+GI+M  +  V+P+ED   K+  V+  +G+ VLDTC GLGY
Sbjct: 91  NG-YYKLVPTI--PPTIEINGIRMHRTKEVNPYEDTLNKINAVKVKKGEKVLDTCMGLGY 147

Query: 146 FAACCLEAGAIHIRSFEKNPDVLWLRTLNPWSPNPQAIQANQRLELVGGDIAQAIEDLPD 205
            A      GA  + + EKNP+VL L  +NP+S           ++++ GD    I+   D
Sbjct: 148 TAIEAYRRGA-EVITIEKNPNVLELAKINPYSEE----LFKGGIKIILGDAYDVIKRFKD 202

Query: 206 ASVDAILHDPPRFSIAGELYALRFYDQLARVLCRDGQMFHYTGTPTQLSHGRDVPREIAR 265
              D ++HDPPRFS+AG LY+  FY ++ RVL   G++FHY G P +   G+D+ + +  
Sbjct: 203 EEFDVVIHDPPRFSLAGHLYSEEFYKEIFRVLKPGGRLFHYVGNPGKKYRGKDLQKGVME 262

Query: 266 RLEQAGF 272
           RL + GF
Sbjct: 263 RLRKVGF 269


>gi|4753879|emb|CAB42042.1| (AL049754) putative spermidine synthase
           [Streptomyces coelicolor]
           Length = 554
           
 Score = 38.7 bits (88), Expect = 0.062
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 114 LRVSPFEDARRKVALVRPQ----GKTVLDTCGGLGYFAACCLE-AGAIHIRSFEKNPDVL 168
           LRV   ++     ALV P        VL   GG G  A   L   G   +   E +P + 
Sbjct: 302 LRVRGSDERSYHEALVHPAMGGPHARVLILGGGDGLAAREVLRHPGVRRVDVLEADPGLA 361

Query: 169 WLRTLNPW-SPNPQAIQANQRLELVGGDIAQAIEDLPDASVDAILHD--PPRFSIAGELY 225
            L   +P  S   +    + R+ ++ GD    +   P A+ D ++ D   P  + + +LY
Sbjct: 362 RLARHDPGLSTLNEHAYGDARVRVLSGDAFHRLRATPSATYDVVISDLPDPGVTASTKLY 421

Query: 226 ALRFYDQLARVLCRDGQMFHYTG 248
           +  FY  L RVL  DG++  + G
Sbjct: 422 SQEFYGLLRRVLAPDGRLAVHAG 444


>gi|1730925|sp|P54171|YPIP_BACSU HYPOTHETICAL 19.0 KD PROTEIN IN
           ILVD-THYB INTERGENIC REGION >gi|1256637 (L77246)
           putative [Bacillus subtilis] >gi|2634605|emb|CAB14103|
           (Z99115) ypiP [Bacillus subtilis]
           Length = 172
           
 Score = 37.9 bits (86), Expect = 0.11
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 132 QGKTVLDTCGGLGYFAACCL----EAGAIHIRSFEKNP--DVLWLRTLNPWSPNPQAIQA 185
           +G T LD   GLG  A        E G++     EKN    VL    L+ W    + +QA
Sbjct: 9   EGDTFLDCTLGLGSDAIIASMAVGETGSVV--GIEKNHLVSVLVRTGLHSWETGIEELQA 66

Query: 186 N-QRLELVGGDIAQAIEDLPDASVDAILHDP 215
             +R+++  GD  + I+ LPD SVD +  DP
Sbjct: 67  AMRRIQVKNGDCFEHIKQLPDNSVDVVYFDP 97


>gi|3261489|emb|CAA15488| (AL008687) speE [Mycobacterium
           tuberculosis]
           Length = 523
           
 Score = 34.8 bits (78), Expect = 0.92
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 134 KTVLDTCGGLGYFAACCL-EAGAIHIRSFEKNPDVLWLRTLNPWSPNPQAIQANQRLELV 192
           ++VL   GG G  A   L + G   I   E +P V+ L        N  ++  N R+ +V
Sbjct: 304 RSVLVLGGGDGLAARELLRQPGIEQIVQVELDPAVIELARTTLRDVNAGSLD-NPRVHVV 362

Query: 193 GGDIAQAIED--LPDASVDAILHD--PPRFSIAGELYALRFYDQLARVLCRDGQMFHYTG 248
             D    +    +P A  DA++ D   P   + G LY+  FY   AR L   G M    G
Sbjct: 363 IDDAMSWLRGAAVPPAGFDAVIVDLRDPDTPVLGRLYSTEFYALAARALAPGGLMVVQAG 422

Query: 249 TP 250
           +P
Sbjct: 423 SP 424


>gi|3183237|sp|P87177|YB1C_SCHPO HYPOTHETICAL 103.4 KD TRP-ASP
           REPEATS CONTAINING PROTEIN C3D6.12 IN CHROMOSOME II
           >gi|2117308|emb|CAB09121.1| (Z95620) trp asp repeat
           protein [Schizosaccharomyces pombe]
           Length = 922
           
 Score = 34.8 bits (78), Expect = 0.92
 Identities = 28/102 (27%), Positives = 44/102 (42%), Gaps = 10/102 (9%)

Query: 13  PLLTRDIGH----ALQEARSRGTATWSGSLDLGRTHTQVRIATDAWHAKTH---TYPYPN 65
           P+L+ DI +     +  +  +    W   LD G  H  +    D+    T    TY +  
Sbjct: 578 PVLSMDISYDSKLLVTCSADKNVKIWG--LDFGDCHKSIFAHQDSIMEVTFQPDTYNFFT 635

Query: 66  RLKDRTIYYWDGQNFTAISRFSGSLIKLVPTPWGVPTFEIDG 107
             KDR + YWDG++F  I +  G   ++     G PTF + G
Sbjct: 636 CSKDREVRYWDGKSFDLILKLRGHHSEVWALAVG-PTFVVSG 676


>gi|2305234 (AF011895) adenine DNA methyltransferase [Brucella
           abortus]
           Length = 377
           
 Score = 34.8 bits (78), Expect = 0.92
 Identities = 16/36 (44%), Positives = 22/36 (60%), Gaps = 1/36 (2%)

Query: 191 LVGGDIAQAIEDLPDASVDAILHDPP-RFSIAGELY 225
           ++ GD   A+E LPD SVD I  DPP    + G+L+
Sbjct: 23  IIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLH 58


>gi|2791628|emb|CAA16115.1| (AL021287) hypothetical protein Rv3030
           [Mycobacterium tuberculosis]
           Length = 274
           
 Score = 33.6 bits (75), Expect = 2.1
 Identities = 25/74 (33%), Positives = 38/74 (50%), Gaps = 7/74 (9%)

Query: 188 RLELVGGDIAQAIEDLPDASVDAILHDPPRFSIAGELY-ALRFYDQLARVLCRDGQMFHY 246
           R+E++  ++A+    LPDASVD +++    F +   L+   RF  + ARVL   G +   
Sbjct: 105 RVEVMQANLAEL--PLPDASVDVVVN----FQVIEHLWDQARFVRECARVLRGSGLLMVS 158

Query: 247 TGTPTQLSHGRDVP 260
           T      S GRD P
Sbjct: 159 TPNRITFSPGRDTP 172


>gi|5051814|emb|CAB45043.1| (AL078635) putative rRNA methylase
           [Amycolatopsis orientalis]
           Length = 259
           
 Score = 33.6 bits (75), Expect = 2.1
 Identities = 41/129 (31%), Positives = 53/129 (40%), Gaps = 30/129 (23%)

Query: 119 FEDARRKVALVRPQGKTVLDTCGGLGYFAACCLEAGAIHIRSFEKNPDVLWLRTLNPWSP 178
           +  A  + AL    G  VLD   G G   A  +  GA  I      PD   L  L    P
Sbjct: 27  YAPAAARWALEHAPGPRVLDLGAGTGKLTAALVALGAEVIAV---EPDPAMLTELRRAVP 83

Query: 179 NPQAIQANQRLELVGGDIAQAIEDLPDASVDAILHDPPRFSIAGELYALRFYD------Q 232
             +A+  N          A+AI  LPDAS+DA+L        AG   AL ++D      +
Sbjct: 84  TVRALPGN----------AEAIP-LPDASIDAVL--------AGN--ALHWFDMSVAGPE 122

Query: 233 LARVLCRDG 241
           +ARVL   G
Sbjct: 123 IARVLAPGG 131


>gi|5106170|dbj|BAA81481.1| (AP000064) 420aa long hypothetical fmu
           protein [Aeropyrum pernix]
           Length = 420
           
 Score = 33.2 bits (74), Expect = 2.7
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 67  LKDRTIYYWDGQNFTAISRFSGSLIKLVPTPWGVPTFEIDGIKMLPSLRVSPFEDARRKV 126
           ++   +Y W       + R+ G              F     ++L   ++ P +++    
Sbjct: 173 IRSSGLYAWPSDRVEGVIRYRGP-------------FNDTLARLLAEGKIVPQDESSAAA 219

Query: 127 A-LVRPQ-GKTVLDTCGGLGYFAACCLEAGAIHIRSFEKNPDVLWLRTLNPWSPNPQAIQ 184
           A L++P+ G+ VLD C   G       E   +  R      D+ W R L       +A  
Sbjct: 220 APLLQPRPGEIVLDMCAAPGGKTTHLAELSRLQARIL--GFDIYWDR-LRRMKTLVEATA 276

Query: 185 ANQRLELVGGDIAQAIEDLPDASVDAILHDPPRFSIAG 222
           +   + +V  D A A + L   SVD IL DPP  +  G
Sbjct: 277 SEAAVAVVKADAANAPKILGRGSVDKILLDPPCSTTGG 314


>gi|1871597|emb|CAB06991| (Z92669) hypothetical protein Rv0224c
           [Mycobacterium tuberculosis]
           Length = 254
           
 Score = 32.8 bits (73), Expect = 3.5
 Identities = 17/36 (47%), Positives = 22/36 (60%), Gaps = 1/36 (2%)

Query: 131 PQGKTVLDTCGGLGYFAACCLEAGAIHIRSFEKNPD 166
           P G+T+LD  GG GYFA    +AG  +I   E +PD
Sbjct: 57  PVGRTLLDVGGGPGYFATAFSDAGVGYI-GVEPDPD 91


>gi|2622309 (AE000888) met-10+ related protein [Methanobacterium
           thermoautotrophicum]
           Length = 244
           
 Score = 32.8 bits (73), Expect = 3.5
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 123 RRKVALVRPQGKTVLDTCGGLGYFA-ACCLEAGAIHIRSFEKNPDVLWLRTLNPWSPNPQ 181
           R ++  +  +G+TV+D   G+GYF+    + +    + S E NPD   L   N       
Sbjct: 85  RARIPSLVEEGETVVDMFAGIGYFSIPVAVHSDPGRVYSVELNPDSFELLKSN------- 137

Query: 182 AIQANQRLELVGGDIAQAIEDLPDASVDAILHDPPRFSIAGELYALRFYDQLARVLCRDG 241
            I  N+   ++   +    E  P+   D +        I G +     +   A    RDG
Sbjct: 138 -ITLNRVEGIIEPILGDCREVAPELDADRV--------IMGYVGRTHHFLDAAMECVRDG 188

Query: 242 QMFHYTGT-PTQLSHGRDVPREIARRLEQA 270
            + HY  T P  +   R +     RR+E+A
Sbjct: 189 GVIHYHETAPEAIRFSRPL-----RRIERA 213


>gi|6094330|sp|O48659|SPE2_HYONI SPERMIDINE SYNTHASE 2 (PUTRESCINE
           AMINOPROPYLTRANSFERASE 2) (SPDSY 2)
           >gi|2821957|dbj|BAA24534| (AB006691) spermidine synthase
           2 [Hyoscyamus niger]
           Length = 308
           
 Score = 32.5 bits (72), Expect = 4.6
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 178 PNPQAIQANQRLELVGGDIAQAIEDLPDASVDAILHDPPR-FSIAGELYALRFYDQLARV 236
           PN      + R++L  GD    ++++P+ + DA++ D       A EL+   F++ +AR 
Sbjct: 137 PNVAIGYEDPRVKLHVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARA 196

Query: 237 LCRDG 241
           LC  G
Sbjct: 197 LCPGG 201


>gi|1073062|pir||B55523 ferredoxin reductase - Pseudomonas sp.
           (strain KKS102) >gi|431770|dbj|BAA04112| (D16831)
           ferredoxin reductase [Pseudomonas sp.]
           Length = 410
           
 Score = 31.7 bits (70), Expect = 8.0
 Identities = 38/148 (25%), Positives = 60/148 (39%), Gaps = 15/148 (10%)

Query: 100 VPTFEIDGIKMLPSLRVSPFEDARRKVALVRPQGKTVLDTCGGLGYFAACCLEAGAIHIR 159
           VPT +   +  + +LR    EDARR  A +RPQ + ++   G +G   A       +H+ 
Sbjct: 118 VPTLQGATMPRVHTLRT--LEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVS 175

Query: 160 SFEKNPDVLWLRTLNPWSPNPQAIQANQRLELVGGDIAQAIEDLPDASVDAILHDPPRFS 219
             E  P     R ++  +P      +       G D+    E     SVD ++       
Sbjct: 176 LVETQP-----RLMSRAAPATLGTSSRATTRPQGVDL--RFERSVTGSVDGVVLLDDGTR 228

Query: 220 IAGELYAL---RFYDQLAR---VLCRDG 241
           IA ++  +   R   QLAR   + C DG
Sbjct: 229 IAADMVVVGHRRVGQQLARAAGLACDDG 256


>gi|98078|pir||S12697 site-specific DNA-methyltransferase
           (cytosine-specific) (EC 2.1.1.73) BamHI - Bacillus
           amyloliquefaciens >gi|39304|emb|CAA38200| (X54303) BamHI
           cellular methylase [Bacillus amyloliquefaciens]
           Length = 400
           
 Score = 31.7 bits (70), Expect = 8.0
 Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 14/71 (19%)

Query: 190 ELVGGDIAQAIEDLPDASVDAILHDPP-------------RFSIAGEL-YALRFYDQLAR 235
           +L  GD  +  + +PD +VD I  DPP             + S +G L +  ++ D+  R
Sbjct: 97  KLYNGDCLELFKQVPDENVDTIFADPPFNLDKEYDEGVTDKNSFSGYLDWYYKWIDECIR 156

Query: 236 VLCRDGQMFHY 246
           VL   G +F Y
Sbjct: 157 VLKPGGSLFIY 167


>gi|282344|pir||S26843 site-specific DNA-methyltransferase BamHI -
           Bacillus amyloliquefaciens
           Length = 423
           
 Score = 31.7 bits (70), Expect = 8.0
 Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 14/71 (19%)

Query: 190 ELVGGDIAQAIEDLPDASVDAILHDPP-------------RFSIAGEL-YALRFYDQLAR 235
           +L  GD  +  + +PD +VD I  DPP             + S +G L +  ++ D+  R
Sbjct: 120 KLYNGDCLELFKQVPDENVDTIFADPPFNLDKEYDEGVTDKNSFSGYLDWYYKWIDECIR 179

Query: 236 VLCRDGQMFHY 246
           VL   G +F Y
Sbjct: 180 VLKPGGSLFIY 190


  Database: nr
    Posted date:  Jan 29, 2000 11:59 PM
  Number of letters in database: 138,416,789
  Number of sequences in database:  449,381
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82671610
Number of Sequences: 449381
Number of extensions: 3499175
Number of successful extensions: 6357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6336
Number of HSP's gapped (non-prelim): 18
length of query: 286
length of database: 138,416,789
effective HSP length: 50
effective length of query: 236
effective length of database: 115,947,739
effective search space: 27363666404
effective search space used: 27363666404
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 70 (31.7 bits)