BLASTP 2.0.10 [Aug-26-1999]
Query= XF-07C09-GL13
(257 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|5514776|emb|CAB50778.1| (X74218) TolQ protein [Pseudomonas p... 187 1e-46
gi|135982|sp|P05828|TOLQ_ECOLI TOLQ PROTEIN >gi|73121|pir||BVEC... 186 1e-46
gi|1729993|sp|P50598|TOLQ_PSEAE TOLQ PROTEIN >gi|1103860|gb|AAC... 185 2e-46
gi|1174730|sp|P43768|TOLQ_HAEIN TOLQ PROTEIN >gi|1074927|pir||I... 172 2e-42
gi|2126344|pir||PC4258 tolQ protein - Haemophilus influenzae (f... 167 1e-40
gi|3860870|emb|CAA14770| (AJ235271) TOLQ PROTEIN (tolQ) [Ricket... 131 6e-30
gi|6118339|gb|AAF04083.1|AF190125_2 (AF190125) ExbB [Pseudomona... 98 1e-19
gi|3916254|gb|AAC78851.1| (AF087669) ExbB [Bordetella bronchise... 89 3e-17
gi|3913614|sp|O34260|EXBB_XANCP BIOPOLYMER TRANSPORT EXBB PROTE... 87 1e-16
gi|5777376|emb|CAB53384.1| (AJ132741) ExbB protein [Bordetella ... 87 1e-16
gi|4127364|emb|CAA76936| (Y17916) TolQ protein [Actinobacillus ... 77 1e-13
gi|3913626|sp|P95375|EXBB_NEIME BIOPOLYMER TRANSPORT EXBB PROTE... 77 2e-13
gi|3913608|sp|O06433|EXBB_NEIGO BIOPOLYMER TRANSPORT EXBB PROTE... 77 2e-13
gi|585111|sp|Q05605|EXBB_PSEPU BIOPOLYMER TRANSPORT EXBB PROTEI... 76 2e-13
gi|3913615|sp|O51808|EXBB_HAEDU BIOPOLYMER TRANSPORT EXBB PROTE... 75 6e-13
gi|3913621|sp|P72202|EXBB_PASHA BIOPOLYMER TRANSPORT EXBB PROTE... 73 2e-12
gi|3913602|sp|O25986|EXB2_HELPY PUTATIVE BIOPOLYMER TRANSPORT E... 71 1e-11
gi|4155948 (AE001556) BIOPOLYMER TRANSPORT PROTEIN [Helicobacte... 71 1e-11
gi|73122|pir||BVECXB exbB protein - Escherichia coli >gi|145868... 71 1e-11
gi|1706725|sp|P18783|EXBB_ECOLI BIOPOLYMER TRANSPORT EXBB PROTE... 71 1e-11
gi|1169576|sp|P43008|EXBB_HAEIN BIOPOLYMER TRANSPORT EXBB PROTE... 69 5e-11
gi|3913611|sp|O25897|EXBB_HELPY BIOPOLYMER TRANSPORT EXBB PROTE... 68 6e-11
gi|4155859 (AE001549) BIOPOLYMER TRANSPORT PROTEIN [Helicobacte... 68 6e-11
gi|555671 (U08209) exbB [Haemophilus influenzae] 65 7e-10
gi|5531413|emb|CAB50918.1| (AJ243354) hypothetical protein [Pse... 63 2e-09
gi|3913619|sp|O67637|EXBB_AQUAE BIOPOLYMER TRANSPORT EXBB PROTE... 62 5e-09
gi|6458137|gb|AAF10032.1|AE001904_8 (AE001904) biopolymer trans... 60 2e-08
gi|3913601|sp|O25755|EXB1_HELPY PUTATIVE BIOPOLYMER TRANSPORT E... 58 7e-08
gi|4155649 (AE001533) BIOPOLYMER TRANSPORT PROTEIN [Helicobacte... 58 7e-08
gi|2984223 (AE000766) TolQ homolog [Aquifex aeolicus] 57 2e-07
gi|4377094|gb|AAD18923| (AE001659) Macromolecule transporter [C... 57 2e-07
gi|3915401|sp|O27101|YA22_METTH PUTATIVE BIOPOLYMER TRANSPORT P... 55 6e-07
gi|3329040|gb|AAC68198.1| (AE001330) polysaccharide transporter... 52 4e-06
gi|3811311 (AF047974) TolR [Vibrio cholerae] 50 2e-05
gi|3913607|sp|Q55834|EXB1_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT E... 49 5e-05
gi|3913623|sp|P72604|EXB3_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT E... 48 8e-05
gi|3913617|sp|O52043|EXBB_VIBCH BIOPOLYMER TRANSPORT EXBB PROTE... 48 8e-05
gi|3913624|sp|P72941|EXB2_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT E... 46 2e-04
gi|5106982|gb|AAD39910.1|AF119047_3 (AF119047) ExbB-like protei... 46 3e-04
gi|3811312 (AF047974) ExbB2 [Vibrio cholerae] 43 0.002
gi|3024163|sp|P56426|MOTA_HELPY CHEMOTAXIS MOTA PROTEIN (MOTILI... 36 0.26
gi|2853602 (AF031898) MotA [Pseudomonas putida] 34 1.3
gi|3721572|dbj|BAA33551| (AB012767) ORF1 [Pseudomonas aeruginosa] 34 1.7
gi|4981199|gb|AAD35759.1|AE001740_5 (AE001740) motility protein... 33 2.2
gi|3915766|sp|Q44902|MOTA_BORBU CHEMOTAXIS MOTA PROTEIN (MOTILI... 33 2.9
gi|1185053 (L75945) flagellar motor apparatus [Borrelia burgdor... 33 2.9
gi|1172774|sp|P45174|PUTP_HAEIN SODIUM/PROLINE SYMPORTER (PROLI... 32 6.6
gi|6321492|ref|NP_011569.1|MUP1| high affinity methionine perme... 32 6.6
>gi|5514776|emb|CAB50778.1| (X74218) TolQ protein [Pseudomonas
putida]
Length = 231
Score = 187 bits (469), Expect = 1e-46
Identities = 100/218 (45%), Positives = 132/218 (59%), Gaps = 1/218 (0%)
Query: 40 LMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS 99
L+ AS+ V++++ S TSW++IF+++ + + R D FE RFWSG DLSKLY
Sbjct: 14 LVSNASVVVQLVMLTLVAASVTSWIMIFQRSTMLRAGRRALDAFEERFWSGIDLSKLYRQ 73
Query: 100 TNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLE 159
S SG+E + DP +EG R MR RE ++LE++L
Sbjct: 74 AGSNPDPDSGVEQVFRAGFKEFSRLRQQPGVDPDAVMEGVGRAMRVAISREEEKLEQSLP 133
Query: 160 LLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIP 219
LA +GST+PY+GL GTV+GIM + + +S QA +A VAPGI+EAL ATA+GLF AIP
Sbjct: 134 FLATVGSTSPYIGLFGTVWGIMNSFRGL-ASAQQATLATVAPGIAEALIATAIGLFAAIP 192
Query: 220 AVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVGIDE 257
AV AYNRF R E L RY TFA+EF AIL R+V E
Sbjct: 193 AVIAYNRFAARSEVLIGRYYTFADEFQAILHRKVHTSE 230
>gi|135982|sp|P05828|TOLQ_ECOLI TOLQ PROTEIN >gi|73121|pir||BVECTQ
tolQ protein - Escherichia coli >gi|1128978 (M16489) ORF
2; putative [Escherichia coli] >gi|1651329|dbj|BAA35403|
(D90713) TolQ protein. [Escherichia coli] >gi|1786958
(AE000177) inner membrane protein, membrane-spanning,
maintains integrity of cell envelope; tolerance to group
A colicins [Escherichia coli]
Length = 230
Score = 186 bits (468), Expect = 1e-46
Identities = 98/220 (44%), Positives = 134/220 (60%), Gaps = 5/220 (2%)
Query: 35 INYIDLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLS 94
+N +DL LKAS+ VK+I+ S SW II ++ R+ A REA+ FE++FWSG +LS
Sbjct: 4 MNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELS 63
Query: 95 KLYASTNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQL 154
+LY + ++ ++G E I P +EGA R MR + RE++ L
Sbjct: 64 RLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENL 123
Query: 155 ERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSG--DQAGIAAVAPGISEALFATAV 212
E ++ L +GS +PY+GL GTV+GIM H I+ G QA + VAPGI+EAL ATA+
Sbjct: 124 ETHIPFLGTVGSISPYIGLFGTVWGIM---HAFIALGAVKQATLQMVAPGIAEALIATAI 180
Query: 213 GLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 252
GLF AIPAV AYNR RV +L + Y+ F EEF+AIL RQ
Sbjct: 181 GLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQ 220
>gi|1729993|sp|P50598|TOLQ_PSEAE TOLQ PROTEIN
>gi|1103860|gb|AAC44658.1| (U39558) TolQ [Pseudomonas
aeruginosa]
Length = 231
Score = 185 bits (466), Expect = 2e-46
Identities = 101/214 (47%), Positives = 130/214 (60%), Gaps = 1/214 (0%)
Query: 40 LMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS 99
L+ ASI V++++ S TSW++IF++ + A + D FE RFWSG DLSKLY
Sbjct: 14 LISNASIVVQLVMLTLVAASVTSWIMIFQRGNAMRAAKKALDAFEERFWSGIDLSKLYRQ 73
Query: 100 TNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLE 159
S SG+E I DP +EG R MR RE ++LE +L
Sbjct: 74 AGSNPDPDSGVEQIFRAGFKEFSRLRQQPGVDPDAVMEGVARAMRVAISREEEKLEASLP 133
Query: 160 LLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIP 219
LA +GST+PYVGL GTV+GIM + + ++ QA +A VAPGI+EAL ATA+GLF AIP
Sbjct: 134 FLATVGSTSPYVGLFGTVWGIMNSFRGL-ATVQQATLATVAPGIAEALIATAIGLFAAIP 192
Query: 220 AVWAYNRFTTRVERLSVRYETFAEEFSAILQRQV 253
AV AYNRF+ R E L RY TFA+EF AIL R+V
Sbjct: 193 AVIAYNRFSARSEMLIGRYYTFADEFQAILHRKV 226
>gi|1174730|sp|P43768|TOLQ_HAEIN TOLQ PROTEIN
>gi|1074927|pir||I64064 inner membrane protein (tolQ)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573355 (U32722) colicin transport protein (tolQ)
[Haemophilus influenzae Rd]
Length = 228
Score = 172 bits (432), Expect = 2e-42
Identities = 92/218 (42%), Positives = 127/218 (58%), Gaps = 1/218 (0%)
Query: 35 INYIDLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLS 94
+N++DL LKASI V++++ S SW II +++R+ A +EA FE+RFWSG DL+
Sbjct: 5 LNFLDLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEARTFEDRFWSGEDLN 64
Query: 95 KLYASTNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQL 154
KLY ++R+ ++G E I P I+G R M RE++ L
Sbjct: 65 KLYEGLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNREIESL 124
Query: 155 ERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGL 214
E + LA + S +PY+GL GTV+GIM +S QA + VAPGI+EAL ATA+GL
Sbjct: 125 ENRVPFLATVASVSPYIGLFGTVWGIMHAFM-ALSGAKQATLQMVAPGIAEALIATAIGL 183
Query: 215 FVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 252
F AIPAV AYNR + RV + Y F +EF+ IL RQ
Sbjct: 184 FAAIPAVMAYNRLSLRVNAIEQDYGNFIDEFTTILHRQ 221
>gi|2126344|pir||PC4258 tolQ protein - Haemophilus influenzae
(fragment) >gi|1685077 (U32470) TolQ [Haemophilus
influenzae]
Length = 220
Score = 167 bits (418), Expect = 1e-40
Identities = 91/214 (42%), Positives = 123/214 (56%), Gaps = 1/214 (0%)
Query: 39 DLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYA 98
DL LKASI V++++ S SW II +++R+ A +EA FE+RFWSG DL+KLY
Sbjct: 1 DLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEAHTFEDRFWSGEDLNKLYE 60
Query: 99 STNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNL 158
++R+ ++G E I P I+G R M RE++ LE +
Sbjct: 61 GLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTTRAMNLAMNREIESLENRV 120
Query: 159 ELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAI 218
LA + S +PY+GL GTV+GIM +S QA + VAPGI+EAL ATA+GLF AI
Sbjct: 121 PFLATVASVSPYIGLFGTVWGIMHAFM-ALSGAKQATLQMVAPGIAEALVATAIGLFAAI 179
Query: 219 PAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 252
PAV AYNR + RV + Y F +EF+ IL RQ
Sbjct: 180 PAVMAYNRLSLRVNAIEQDYVNFIDEFTTILHRQ 213
>gi|3860870|emb|CAA14770| (AJ235271) TOLQ PROTEIN (tolQ) [Rickettsia
prowazekii]
Length = 241
Score = 131 bits (326), Expect = 6e-30
Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 7/222 (3%)
Query: 35 INYIDLMLKASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLS 94
++ + L+ A I K ++ S SW II K Q R FEN FWSG L
Sbjct: 19 LSILSLISSADIIGKSVMLMLLFASIWSWSIILHKIFRLAQVQRRIQSFENVFWSGCVLE 78
Query: 95 KLYASTNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFM---REM 151
+LY S K V+ A+ ++ +R+M ++ RE+
Sbjct: 79 QLYESI---KKSVNNPLALIFVSAMNECNSLNTKGFSEALKNNHKERIMSAMYLAQNREI 135
Query: 152 DQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATA 211
++LE+NL +LA IGS+AP++GL GTV+GIM + I+S +A VAPGI+EAL ATA
Sbjct: 136 EKLEQNLNVLATIGSSAPFIGLFGTVWGIMHSFQS-IASSKNTSLAVVAPGIAEALLATA 194
Query: 212 VGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQV 253
+GLFVAIPAV YN +R+ ++ + E F E ++IL + +
Sbjct: 195 IGLFVAIPAVIFYNYLISRITLINNKIEDFISELNSILSKAI 236
>gi|6118339|gb|AAF04083.1|AF190125_2 (AF190125) ExbB [Pseudomonas
aeruginosa]
Length = 239
Score = 97.5 bits (239), Expect = 1e-19
Identities = 62/194 (31%), Positives = 93/194 (46%), Gaps = 4/194 (2%)
Query: 59 SFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSRKHMVSGLEAIXXXXX 118
S +W + K F + R+ QF+ +FWS T L A ++ +G
Sbjct: 23 SVVTWGLALVKGVQFARQKRQDRQFQKQFWSATSLDS--AGEQAQDKQGAGARVAQAGFA 80
Query: 119 XXXXXXXXXXXXDPRIQIEGA-QRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTV 177
I + +R +R RE LE L +LA+IGST+P++GL GTV
Sbjct: 81 AIQVQDNGQPDLAQSINHQDRLERALRQQIQRERRSLESGLAVLASIGSTSPFIGLFGTV 140
Query: 178 FGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVR 237
+GIM + IS+ A + VA I AL AT VG+ VA+PAV YN F R++ +
Sbjct: 141 WGIMEALKG-ISAAGSASLETVAGPIGSALIATGVGIAVAVPAVLVYNYFLRRLKLTAAD 199
Query: 238 YETFAEEFSAILQR 251
+ FA +F ++ Q+
Sbjct: 200 LDDFAHDFYSLAQK 213
>gi|3916254|gb|AAC78851.1| (AF087669) ExbB [Bordetella
bronchiseptica]
Length = 314
Score = 89.3 bits (218), Expect = 3e-17
Identities = 77/266 (28%), Positives = 114/266 (41%), Gaps = 23/266 (8%)
Query: 7 ALQDTVEALPQDITGVAAQALTGTAHG---------GINYIDLMLKASIPVKIIVXXXXX 57
A Q EAL Q AAQAL+ A + ++ + ++ K +
Sbjct: 42 AAQTGTEALNQ-----AAQALSAAAPAVPPAPLATPDMGFLHFVAQSDFVGKTLFVILIV 96
Query: 58 GSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS--TNSRKHMVSGLEAIXX 115
S +W +I KA + A F N+FW+ + L ++ T+ + S L +
Sbjct: 97 MSLVTWYLIVVKAVGNMGMRKRAAHFLNKFWNASSLEQVENEIVTHGARDPFSHLASHAM 156
Query: 116 XXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVG 175
+ E R MR E +LE L +LA++GSTAP+VGL G
Sbjct: 157 HAQQHHAKFGATKLEESGSNGEFVSRTMRKVIDEETAKLENGLTVLASVGSTAPFVGLFG 216
Query: 176 TVFGIMVTMHDMISSG--DQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVER 233
TV+G+ H ++ G D I +A + EAL T +GL VAIPAV AYN F
Sbjct: 217 TVWGV---YHALVGIGLSDGVTINRIAGPVGEALIMTGLGLAVAIPAVLAYNAFVRNNRV 273
Query: 234 LSVRYETFAEEFSAILQ--RQVGIDE 257
R + FA + A L +QV + +
Sbjct: 274 FLSRLDAFAHDLFAFLTTGQQVAVSD 299
>gi|3913614|sp|O34260|EXBB_XANCP BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2632265|emb|CAB08609| (Z95386) exbB [Xanthomonas
campestris]
Length = 253
Score = 87.0 bits (212), Expect = 1e-16
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 5/199 (2%)
Query: 50 IIVXXXXXGSFTSW----VIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSRKH 105
+++ S SW + IFR R+ A+R F + + + + S
Sbjct: 44 VVLITLIAMSAASWYWTVINIFRATRLKSAADRVTTAFWDAPNAQDAIRAMEEQPASEPF 103
Query: 106 MVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLELLANIG 165
L+A + + E R +R RE +L+ + LLA +G
Sbjct: 104 SKIALDAAQARAHHQRAEGSTGGMGESLSRSEFVDRALRQAVTRESTKLQSGMTLLATVG 163
Query: 166 STAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYN 225
+TAP+VGL+GTV+GI + + ++G A I AVA + EAL TA+GLFVAIPAV+A+N
Sbjct: 164 ATAPFVGLLGTVWGIYGALIKIGATGS-ASIDAVAGPVGEALIMTAIGLFVAIPAVFAFN 222
Query: 226 RFTTRVERLSVRYETFAEE 244
F+ + +++TFA +
Sbjct: 223 FFSKVNSSVIAKFDTFAHD 241
>gi|5777376|emb|CAB53384.1| (AJ132741) ExbB protein [Bordetella
pertussis]
Length = 325
Score = 87.0 bits (212), Expect = 1e-16
Identities = 76/272 (27%), Positives = 114/272 (40%), Gaps = 24/272 (8%)
Query: 7 ALQDTVEALPQ------DITGVAAQALTGTAHG---------GINYIDLMLKASIPVKII 51
A Q EAL Q + AAQAL+ A + ++ + ++ K +
Sbjct: 42 AAQTGAEALNQAAQAGTEAVNQAAQALSAAAPAVPPAPLATPDMGFLHFVAQSDFVGKTL 101
Query: 52 VXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYAS--TNSRKHMVSG 109
S +W +I K + A F N+FW+ + L ++ T+ + S
Sbjct: 102 FIILIVMSLVTWYLIVVKVVGNMGMRKRAAHFLNKFWNASSLEQVENEIVTHGARDPFSH 161
Query: 110 LEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLELLANIGSTAP 169
L + + E R MR E +LE L +LA++GSTAP
Sbjct: 162 LASHAMHAQQHHAKFGATKLEESGSNGEFVSRTMRKVIDEETAKLENGLTVLASVGSTAP 221
Query: 170 YVGLVGTVFGIMVTMHDMISSG--DQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRF 227
+VGL GTV+G+ H ++ G D I +A + EAL T +GL VAIPAV AYN F
Sbjct: 222 FVGLFGTVWGV---YHALVGIGLSDGVTINRIAGPVGEALIMTGLGLAVAIPAVLAYNAF 278
Query: 228 TTRVERLSVRYETFAEEFSAILQ--RQVGIDE 257
R + FA + A L +QV + +
Sbjct: 279 VRNNRVFLSRLDAFAHDLFAFLTTGQQVAVSD 310
>gi|4127364|emb|CAA76936| (Y17916) TolQ protein [Actinobacillus
pleuropneumoniae]
Length = 222
Score = 77.3 bits (187), Expect = 1e-13
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 143 MRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPG 202
+R + + + + L LA+IG+ AP++GL GTV+GI + D+ G Q IA V+
Sbjct: 109 LRNAITQSLRKYDGGLVALASIGAVAPFIGLFGTVWGIFNALMDISQQG-QVSIATVSAP 167
Query: 203 ISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVG 254
I EAL ATA+GLFVAIPAV AYN LS + +A E L G
Sbjct: 168 IGEALVATAMGLFVAIPAVLAYNLIARLNRNLSQDLDHYANELFIYLLHHYG 219
>gi|3913626|sp|P95375|EXBB_NEIME BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|1732297 (U77738) ExbB [Neisseria meningitidis]
Length = 220
Score = 76.9 bits (186), Expect = 2e-13
Identities = 47/110 (42%), Positives = 65/110 (58%), Gaps = 1/110 (0%)
Query: 143 MRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPG 202
+R + + M + + + LA+IG+TAP++GL GTV+GI + ++ SG Q IAAVA
Sbjct: 109 IRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSG-QMSIAAVAGP 167
Query: 203 ISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 252
I EAL ATA GLFVAIPAV AYN + L+ + A + L Q
Sbjct: 168 IGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>gi|3913608|sp|O06433|EXBB_NEIGO BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2098622 (U79563) ExbB [Neisseria gonorrhoeae]
Length = 220
Score = 76.9 bits (186), Expect = 2e-13
Identities = 47/110 (42%), Positives = 65/110 (58%), Gaps = 1/110 (0%)
Query: 143 MRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPG 202
+R + + M + + + LA+IG+TAP++GL GTV+GI + ++ SG Q IAAVA
Sbjct: 109 IRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSG-QMSIAAVAGP 167
Query: 203 ISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQ 252
I EAL ATA GLFVAIPAV AYN + L+ + A + L Q
Sbjct: 168 IGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>gi|585111|sp|Q05605|EXBB_PSEPU BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|320395|pir||S28442 exbB protein - Pseudomonas putida
>gi|49193|emb|CAA49714| (X70139) inner-membrane protein
ExbB [Pseudomonas putida]
Length = 329
Score = 76.5 bits (185), Expect = 2e-13
Identities = 72/231 (31%), Positives = 103/231 (44%), Gaps = 24/231 (10%)
Query: 6 LALQDTVEALPQDITGVAAQALTGTAHGGINYIDLMLKASIPVKIIVXXXXXGSFTSWVI 65
+A+ VEAL +D T G AH ++ + A I VKI++ S +W I
Sbjct: 80 VAVDPGVEALVEDTT-------LGMAHD-LSPWGMYKNADIVVKIVMIGLAIASIITWTI 131
Query: 66 IFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSRKHM-VSGLEAIXXXXXXXXXXX 124
K A R ++++L S + ++ VS E
Sbjct: 132 WIAKGFELMGAKRRLRG---------EIAQLKKSASLKEASEVSNKEGTLAHTLVHDALE 182
Query: 125 XXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNLE----LLANIGSTAPYVGLVGTVFGI 180
+ R + EG + + R + RN+ +LA IGSTAP+VGL GTV+GI
Sbjct: 183 EMRLSANTR-EKEGIKERVAFRLERLVAASGRNMSSGTGVLATIGSTAPFVGLFGTVWGI 241
Query: 181 MVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRV 231
M + I+ +A VAPGI+EAL ATA+GL AIPAV YN F +
Sbjct: 242 MNSFIG-IAKTQTTNLAVVAPGIAEALLATALGLVAAIPAVVIYNVFARSI 291
>gi|3913615|sp|O51808|EXBB_HAEDU BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2843112 (AF001034) ExbB [Haemophilus ducreyi]
Length = 150
Score = 74.9 bits (181), Expect = 6e-13
Identities = 37/86 (43%), Positives = 57/86 (66%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 213
L RNL ++ IG+ APYVGL+GTV GI++T + + SG + A++ +S AL ATA G
Sbjct: 56 LTRNLTTISTIGANAPYVGLLGTVLGILLTFYHLGHSGGEIDAASIMVHLSLALKATAAG 115
Query: 214 LFVAIPAVWAYNRFTTRVERLSVRYE 239
+ VAIPA+ Y+ F +VE ++++
Sbjct: 116 ILVAIPAMMFYSGFNRKVEENKLKWQ 141
>gi|3913621|sp|P72202|EXBB_PASHA BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|1575389 (U62565) ExbB [Pasteurella haemolytica]
Length = 152
Score = 73.4 bits (177), Expect = 2e-12
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 133 RIQIEGAQRVMRTNFMREMD-QLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSG 191
RI + + + + E+D L NL ++ IGS APY+GL+GTV GI++T + + SG
Sbjct: 34 RIMFYSKVDISKYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSG 93
Query: 192 DQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRY 238
A++ +S AL ATAVG+ VAI A+ YN F +VE +++
Sbjct: 94 GDIDAASIMVNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKW 140
>gi|3913602|sp|O25986|EXB2_HELPY PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 2 >gi|2314617|gb|AAD08483.1|
(AE000644) biopolymer transport protein (exbB)
[Helicobacter pylori 26695]
Length = 150
Score = 71.0 bits (171), Expect = 1e-11
Identities = 40/90 (44%), Positives = 56/90 (61%), Gaps = 5/90 (5%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGI--AAVAPGISEALFATA 211
L + L L+A IGS APY+GL+GTV GIM+T D+ G +GI A+ ++ AL AT
Sbjct: 49 LHKRLTLVATIGSNAPYIGLLGTVMGIMLTFMDL---GSASGIDTKAIMTNLALALKATG 105
Query: 212 VGLFVAIPAVWAYNRFTTRVERLSVRYETF 241
+GL VAIPA+ YN + E L +++ F
Sbjct: 106 MGLLVAIPAIVIYNLLVRKSEILVTKWDIF 135
>gi|4155948 (AE001556) BIOPOLYMER TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 150
Score = 71.0 bits (171), Expect = 1e-11
Identities = 40/90 (44%), Positives = 56/90 (61%), Gaps = 5/90 (5%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGI--AAVAPGISEALFATA 211
L + L L+A IGS APY+GL+GTV GIM+T D+ G +GI A+ ++ AL AT
Sbjct: 49 LHKRLTLVATIGSNAPYIGLLGTVMGIMLTFMDL---GSASGIDTKAIMTNLALALKATG 105
Query: 212 VGLFVAIPAVWAYNRFTTRVERLSVRYETF 241
+GL VAIPA+ YN + E L +++ F
Sbjct: 106 MGLLVAIPAIVIYNLLVRKSEILVTKWDIF 135
>gi|73122|pir||BVECXB exbB protein - Escherichia coli >gi|145868
(M28819) exbB peptide [Escherichia coli]
Length = 244
Score = 70.6 bits (170), Expect = 1e-11
Identities = 58/194 (29%), Positives = 82/194 (41%), Gaps = 16/194 (8%)
Query: 44 ASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSR 103
A I VK ++ S +W I F K+ F R + + L N
Sbjct: 19 ADIVVKCVMIGLILASVVTWAIFFSKSVEFFNLKRRLKREQQLLAEARSL-------NQA 71
Query: 104 KHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMD------QLERN 157
+ + + + EG + RT+F E Q+ R
Sbjct: 72 NDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKE--RTSFRLERRVAAVGRQMGRG 129
Query: 158 LELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVA 217
LA IG+ +P+VGL GTV+GIM + I+ +A VAPGI+EAL ATA+GL A
Sbjct: 130 NGYLATIGAISPFVGLFGTVWGIMNSFIG-IAQTQTTNLAVVAPGIAEALLATAIGLVAA 188
Query: 218 IPAVWAYNRFTTRV 231
IPAV YN F ++
Sbjct: 189 IPAVVIYNVFARQI 202
>gi|1706725|sp|P18783|EXBB_ECOLI BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|882535 (U28377) exbB gene product [Escherichia coli]
>gi|1789381 (AE000383) uptake of enterochelin;
tonB-dependent uptake of B colicins [Escherichia coli]
Length = 244
Score = 70.6 bits (170), Expect = 1e-11
Identities = 58/194 (29%), Positives = 82/194 (41%), Gaps = 16/194 (8%)
Query: 44 ASIPVKIIVXXXXXGSFTSWVIIFRKARVFKQANREADQFENRFWSGTDLSKLYASTNSR 103
A I VK ++ S +W I F K+ F R + + L N
Sbjct: 19 ADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSL-------NQA 71
Query: 104 KHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMD------QLERN 157
+ + + + EG + RT+F E Q+ R
Sbjct: 72 NDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKE--RTSFRLERRVAAVGRQMGRG 129
Query: 158 LELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVA 217
LA IG+ +P+VGL GTV+GIM + I+ +A VAPGI+EAL ATA+GL A
Sbjct: 130 NGYLATIGAISPFVGLFGTVWGIMNSFIG-IAQTQTTNLAVVAPGIAEALLATAIGLVAA 188
Query: 218 IPAVWAYNRFTTRV 231
IPAV YN F ++
Sbjct: 189 IPAVVIYNVFARQI 202
>gi|1169576|sp|P43008|EXBB_HAEIN BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|1073903|pir||H64057 biopolymer transport protein
(exbB) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573219 (U32711) biopolymer transport protein (exbB)
[Haemophilus influenzae Rd]
Length = 150
Score = 68.7 bits (165), Expect = 5e-11
Identities = 34/91 (37%), Positives = 58/91 (63%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 213
L RN+ +++ IG+ APYVGL+GTV GI++T + + G + + +S AL ATA+G
Sbjct: 56 LNRNMTVISTIGANAPYVGLLGTVIGILLTFYQIGHGGGDIDPSVIMLHLSLALKATALG 115
Query: 214 LFVAIPAVWAYNRFTTRVERLSVRYETFAEE 244
+ VAIP++ YN +VE ++++ +E+
Sbjct: 116 ILVAIPSMVFYNGLGRKVEVNRLKWKVLSEQ 146
>gi|3913611|sp|O25897|EXBB_HELPY BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2314506|gb|AAD08381.1| (AE000635) biopolymer
transport protein (exbB) [Helicobacter pylori 26695]
Length = 166
Score = 68.3 bits (164), Expect = 6e-11
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 213
L +NL +L I S APYVGL+GTV GIMV +DM SG + G+S AL ATA+G
Sbjct: 78 LTKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGM-DAKTIMVGLSLALKATALG 136
Query: 214 LFVAIPAVWAYNRFTTRVERLSVRY 238
L VAIP + AYN + + LS ++
Sbjct: 137 LAVAIPTLIAYNSLLRKSDVLSEKF 161
>gi|4155859 (AE001549) BIOPOLYMER TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 145
Score = 68.3 bits (164), Expect = 6e-11
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 213
L +NL +L I S APYVGL+GTV GIMV +DM SG + G+S AL ATA+G
Sbjct: 57 LTKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGM-DAKTIMVGLSLALKATALG 115
Query: 214 LFVAIPAVWAYNRFTTRVERLSVRY 238
L VAIP + AYN + + LS ++
Sbjct: 116 LAVAIPTLIAYNSLLRKSDVLSEKF 140
>gi|555671 (U08209) exbB [Haemophilus influenzae]
Length = 150
Score = 64.8 bits (155), Expect = 7e-10
Identities = 33/91 (36%), Positives = 56/91 (61%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 213
L N+ +++ IG+ APYVGL+GTV GI++T + + G + + +S AL ATA+G
Sbjct: 56 LNSNMTVISTIGANAPYVGLLGTVIGILLTFYQIGHGGGDIDPSEIMLHLSLALKATALG 115
Query: 214 LFVAIPAVWAYNRFTTRVERLSVRYETFAEE 244
+ VAIP++ YN +VE ++++ E+
Sbjct: 116 ILVAIPSMVFYNGLGRKVEVNRLKWKVLNEQ 146
>gi|5531413|emb|CAB50918.1| (AJ243354) hypothetical protein
[Pseudomonas stutzeri]
Length = 199
Score = 63.2 bits (151), Expect = 2e-09
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 149 REMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALF 208
R + LER L L I AP +GL+GTV G++ + SG A +A GIS+AL
Sbjct: 87 RVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGSG-MANAPLLAGGISKALI 145
Query: 209 ATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVGID 256
TA GL V IPA++ + RV+ L V E A + ++Q +D
Sbjct: 146 TTAAGLMVGIPALFFHRFLLRRVDELVVGMEQEAIKLVEVVQGDRDVD 193
>gi|3913619|sp|O67637|EXBB_AQUAE BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2984051 (AE000754) biopolymer transport exbB
[Aquifex aeolicus]
Length = 148
Score = 62.1 bits (148), Expect = 5e-09
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 153 QLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAV 212
+L + L ++A + S APYVGL+GTV GI++T + +I + G++ AL ATA+
Sbjct: 52 ELTKRLYIIATVASNAPYVGLLGTVLGILLTFY-IIGEKGIVNTKEIMVGLALALKATAL 110
Query: 213 GLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSA 247
GL VAIP+ YN +V + +E E S+
Sbjct: 111 GLIVAIPSTILYNFLVRKVREKLLDWEAIHGECSS 145
>gi|6458137|gb|AAF10032.1|AE001904_8 (AE001904) biopolymer transport
protein, putative [Deinococcus radiodurans]
Length = 230
Score = 59.7 bits (142), Expect = 2e-08
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 137 EGAQRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGI 196
E AQ M ++E ++ L L AP +GL+GTV G MV + S+ +
Sbjct: 90 EAAQAAMNAALIQEDGRMYAGLSALGTAAQIAPLLGLLGTVVG-MVRSFLVFSATNNPTP 148
Query: 197 AAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQRQVGI 255
+A GISEAL TA GL VAI A A N + ++ + E EE + L R V +
Sbjct: 149 TELAQGISEALINTAAGLIVAIVAYVARNALRNKANAVAAQAERVREELPSWLLRPVAV 207
>gi|3913601|sp|O25755|EXB1_HELPY PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 1 >gi|2314281|gb|AAD08172.1|
(AE000619) biopolymer transport protein (exbB)
[Helicobacter pylori 26695]
Length = 189
Score = 58.2 bits (138), Expect = 7e-08
Identities = 36/86 (41%), Positives = 50/86 (57%), Gaps = 1/86 (1%)
Query: 151 MDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFAT 210
+ Q L +L+ I STAP++GL GTV I+ +++ + G QA +AP IS+AL AT
Sbjct: 92 LKQSTTGLVVLSIISSTAPFIGLFGTVVEILEAFNNLGTLG-QASFGVIAPIISKALIAT 150
Query: 211 AVGLFVAIPAVWAYNRFTTRVERLSV 236
A G+ AIPA Y +V LSV
Sbjct: 151 AAGILAAIPAYSFYLILKRKVYDLSV 176
>gi|4155649 (AE001533) BIOPOLYMER TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 189
Score = 58.2 bits (138), Expect = 7e-08
Identities = 36/86 (41%), Positives = 50/86 (57%), Gaps = 1/86 (1%)
Query: 151 MDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFAT 210
+ Q L +L+ I STAP++GL GTV I+ +++ + G QA +AP IS+AL AT
Sbjct: 92 LKQSTTGLVVLSIISSTAPFIGLFGTVVEILEAFNNLGALG-QASFGVIAPIISKALIAT 150
Query: 211 AVGLFVAIPAVWAYNRFTTRVERLSV 236
A G+ AIPA Y +V LSV
Sbjct: 151 AAGILAAIPAYSFYLILKRKVYDLSV 176
>gi|2984223 (AE000766) TolQ homolog [Aquifex aeolicus]
Length = 204
Score = 57.0 bits (135), Expect = 2e-07
Identities = 31/84 (36%), Positives = 46/84 (53%)
Query: 141 RVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVA 200
R+M + ++E+NL +L+ S AP +GL GT+ G++ + + +A
Sbjct: 95 RLMEEELSALVPKIEKNLPILSTTASVAPLLGLFGTITGLIKVFQAYAITTQGEAMNLLA 154
Query: 201 PGISEALFATAVGLFVAIPAVWAY 224
GISE L A A GL VAIPA+ AY
Sbjct: 155 KGISEVLVAAATGLGVAIPALLAY 178
>gi|4377094|gb|AAD18923| (AE001659) Macromolecule transporter
[Chlamydia pneumoniae]
Length = 232
Score = 56.6 bits (134), Expect = 2e-07
Identities = 33/72 (45%), Positives = 49/72 (67%), Gaps = 2/72 (2%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 213
L +N + A S AP++GL+GTV+GI+V ISSG +G +A+ G++ AL T +G
Sbjct: 130 LHKNSFIPATTISLAPFLGLLGTVWGILVAFTH-ISSGS-SGNSAIMEGLATALGTTIIG 187
Query: 214 LFVAIPAVWAYN 225
LFVAIP++ A+N
Sbjct: 188 LFVAIPSLIAFN 199
>gi|3915401|sp|O27101|YA22_METTH PUTATIVE BIOPOLYMER TRANSPORT
PROTEIN EXBB HOMOLOG >gi|2622125 (AE000875) biopolymer
transport protein [Methanobacterium thermoautotrophicum]
Length = 279
Score = 55.0 bits (130), Expect = 6e-07
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 133 RIQIEGAQRVMRTNFMREMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGD 192
R ++E A M F+ EM + R L L I AP +GL+GTV GI T + G
Sbjct: 98 RSEVEDA---MERVFIVEMSNMTRGLGTLRTIIEVAPMLGLIGTVIGIWYTFRAL---GV 151
Query: 193 QAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVE 232
A AA+A GI AL T +GL VAI + Y+ T R++
Sbjct: 152 NADPAAMAEGIYVALITTILGLAVAIILMPLYSYITGRID 191
>gi|3329040|gb|AAC68198.1| (AE001330) polysaccharide transporter
[Chlamydia trachomatis]
Length = 232
Score = 52.3 bits (123), Expect = 4e-06
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVG 213
L +N + A S AP++GL+GTV+GI++ IS+G QA + G++ AL T VG
Sbjct: 130 LNKNNFIPATTISLAPFLGLLGTVWGILLAFAH-ISTG-QANGTIMMEGLATALGTTIVG 187
Query: 214 LFVAIPAVWAYNRFTTRVERLSVRYETFA 242
LFVAIP++ +N ++S+ E A
Sbjct: 188 LFVAIPSLVGFNYLRAHAFQVSLEIEQTA 216
>gi|3811311 (AF047974) TolR [Vibrio cholerae]
Length = 457
Score = 50.4 bits (118), Expect = 2e-05
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 150 EMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFA 209
E + LE L +L + + AP +GL+GTV G M+ +I+ +A GIS AL
Sbjct: 341 EQNHLETGLSMLKLLAALAPMLGLLGTVTG-MIETFQVITQFGNGDPKVMAGGISMALVT 399
Query: 210 TAVGLFVAIPAVWAYNRFTTRVERL 234
T GL AIP + A+N + + E +
Sbjct: 400 TVEGLIAAIPLLLAHNILSAQAEAI 424
>gi|3913607|sp|Q55834|EXB1_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 1 >gi|1001752|dbj|BAA10590| (D64004)
hypothetical protein [Synechocystis sp.]
Length = 254
Score = 48.8 bits (114), Expect = 5e-05
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 149 REMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMI--SSGDQAGIAAVAPGISEA 206
+E ++ R +LL I + AP +GL+GTV G++ T +++ G A A GI EA
Sbjct: 129 KEFARMRRGDKLLETIIALAPLLGLLGTVTGLIRTFNNLNIGGGGSSAEATQAASGIGEA 188
Query: 207 LFATAVGLFVAIPAVWAY 224
L TA G+ VAI A+ +
Sbjct: 189 LITTAAGMMVAIFALLVF 206
>gi|3913623|sp|P72604|EXB3_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 3 >gi|1651676|dbj|BAA16604| (D90899)
biopolymer transport ExbB protein [Synechocystis sp.]
Length = 210
Score = 48.0 bits (112), Expect = 8e-05
Identities = 30/79 (37%), Positives = 44/79 (54%), Gaps = 1/79 (1%)
Query: 150 EMDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDM-ISSGDQAGIAAVAPGISEALF 208
E+ L+R L I + +P +GL+GT+ G+M + M + S A + V GISEAL
Sbjct: 94 ELPLLKRFNTLFQTIITVSPLLGLLGTILGLMRSFSSMSLGSTTAANASGVTGGISEALV 153
Query: 209 ATAVGLFVAIPAVWAYNRF 227
+T +GL VAI + N F
Sbjct: 154 STVMGLVVAIATLLFANVF 172
>gi|3913617|sp|O52043|EXBB_VIBCH BIOPOLYMER TRANSPORT EXBB PROTEIN
>gi|2738771 (AF016580) ExbB [Vibrio cholerae]
Length = 228
Score = 48.0 bits (112), Expect = 8e-05
Identities = 24/69 (34%), Positives = 38/69 (54%)
Query: 153 QLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAV 212
Q L LL IG +P +GL+GTV G++ + ++ +A G+ A++ TA
Sbjct: 108 QFNSGLRLLTLIGVISPLLGLLGTVLGLIEMFKGVAATTGSITPNVLADGLGVAMYTTAA 167
Query: 213 GLFVAIPAV 221
GL +A+PAV
Sbjct: 168 GLLIAVPAV 176
>gi|3913624|sp|P72941|EXB2_SYNY3 PUTATIVE BIOPOLYMER TRANSPORT
EXBB-LIKE PROTEIN 2 >gi|1652033|dbj|BAA16958| (D90902)
biopolymer transport ExbB protein [Synechocystis sp.]
Length = 227
Score = 46.5 bits (108), Expect = 2e-04
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 154 LERNLELLANIGSTAPYVGLVGTVFGIMVTMHDM-ISSGDQAGIAAVAPGISEALFATAV 212
+ R ++L I + +P +GL+GTV G++ ++ + IS A A V GI EAL +TA
Sbjct: 105 MRRGDKILEAIIALSPLLGLLGTVLGLIQSLSSIQISDLGTASTAGVTLGIGEALISTAA 164
Query: 213 GLFVAIPAVWAYNRF 227
GL +AI ++ Y F
Sbjct: 165 GLIIAIVSLAFYRVF 179
>gi|5106982|gb|AAD39910.1|AF119047_3 (AF119047) ExbB-like protein
[Vibrio parahaemolyticus]
Length = 231
Score = 46.1 bits (107), Expect = 3e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 153 QLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAV 212
QL L LL IG +P +GL+GTV G++ + S +A G+ A+ TA
Sbjct: 108 QLHSGLRLLTLIGVISPLIGLLGTVLGLIEMFKGIAVSTGNITPNDLADGLGLAMRTTAA 167
Query: 213 GLFVAIPAV 221
GL +A+PA+
Sbjct: 168 GLIIALPAI 176
>gi|3811312 (AF047974) ExbB2 [Vibrio cholerae]
Length = 179
Score = 43.4 bits (100), Expect = 0.002
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 141 RVMRTNFMREM-DQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAV 199
R +R ++ E + L +NL L+ + + P +GL+GTV G M+++ D++++ + +
Sbjct: 74 RSIREQWLGEAHNALNQNLNLIKVLVAICPMLGLLGTVTG-MISVFDVMATQGSSDPKLM 132
Query: 200 APGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYE 239
A GIS A T G+ A+ ++ + R + L ++ E
Sbjct: 133 ASGISLATLPTMAGMVAALAGLFVHARLSKTCRGLEMKLE 172
>gi|3024163|sp|P56426|MOTA_HELPY CHEMOTAXIS MOTA PROTEIN (MOTILITY
PROTEIN A) >gi|2313947|gb|AAD07864.1| (AE000593)
flagellar motor rotation protein (motA) [Helicobacter
pylori 26695] >gi|4155315 (AE001506) putative CHEMOTAXIS
PROTEIN (MOTILITY PROTEIN A) [Helicobacter pylori J99]
Length = 257
Score = 36.4 bits (82), Expect = 0.26
Identities = 26/91 (28%), Positives = 45/91 (48%), Gaps = 12/91 (13%)
Query: 165 GSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAY 224
G TAP +GLVG V G+M+ + + + A +A GI+ A AT G+ + +Y
Sbjct: 150 GETAPTMGLVGAVMGLMLALQKLDNP------AEMAAGIAGAFTATVTGI------MCSY 197
Query: 225 NRFTTRVERLSVRYETFAEEFSAILQRQVGI 255
F +L + + +E + +L+ +GI
Sbjct: 198 AIFGPFGHKLKAKSKDIIKEKTVLLEGILGI 228
>gi|2853602 (AF031898) MotA [Pseudomonas putida]
Length = 246
Score = 34.0 bits (76), Expect = 1.3
Identities = 33/156 (21%), Positives = 64/156 (40%), Gaps = 14/156 (8%)
Query: 99 STNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNL 158
S +RK + GLE + D + E + ++ +F+ + + +
Sbjct: 85 SLTARKEGLLGLEGVADAEPDPYARKGLQLLVDGA-EPEAIRSILEVDFLTQESRDIQAA 143
Query: 159 ELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGL---- 214
++ ++G AP +G++G V G++ M G+ A + + GI+ A AT G+
Sbjct: 144 KVFESMGGYAPTIGIIGAVMGLIHVM------GNLADPSQLGNGIAVAFVATIYGVASAN 197
Query: 215 FVAIPAVWAYNRFTTRVERLSVRYETFAEEFSAILQ 250
+ +P N+ V R S E E +I +
Sbjct: 198 LILLPVA---NKLKANVMRQSRYREMLLEGLLSIAE 230
>gi|3721572|dbj|BAA33551| (AB012767) ORF1 [Pseudomonas aeruginosa]
Length = 246
Score = 33.6 bits (75), Expect = 1.7
Identities = 35/153 (22%), Positives = 64/153 (40%), Gaps = 8/153 (5%)
Query: 99 STNSRKHMVSGLEAIXXXXXXXXXXXXXXXXXDPRIQIEGAQRVMRTNFMREMDQLERNL 158
S +RK + GLE+I D + E + ++ + + + +
Sbjct: 85 SMTARKEGLLGLESIADAEPDPYARKGLQLLVDGA-EPEVIRSILEVDLFTQESRDLQAA 143
Query: 159 ELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGDQAGIAAVAPGISEALFATAVGL-FVA 217
++ ++G AP +G++G V G++ M G+ A A + GI+ A AT G+ F
Sbjct: 144 KVFESMGGYAPTIGIIGAVMGLIHVM------GNLANPAQLGSGIAVAFVATIYGVGFAN 197
Query: 218 IPAVWAYNRFTTRVERLSVRYETFAEEFSAILQ 250
+ + N+ T V R S E E +I +
Sbjct: 198 LLLLPIGNKLKTLVLRQSRYREMLLEGLLSIAE 230
>gi|4981199|gb|AAD35759.1|AE001740_5 (AE001740) motility protein A
[Thermotoga maritima]
Length = 262
Score = 33.2 bits (74), Expect = 2.2
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 133 RIQIEGAQRVMRTNFMR-EMDQLERNLE----LLANIGSTAPYVGLVGTVFGIMVTMHDM 187
++ ++G + N M EM+ E L+ +L + G+ AP G++GT+ G ++ M
Sbjct: 113 QLVVDGTDPDLLRNMMETEMELFEEELDGERAVLESAGAYAPAFGMIGTLIG-LIQMLKS 171
Query: 188 ISSGDQAGIAAVAPGISEALFATAVGLFVAIPAVWAYNRFTTRVERLSVRYETFAEEFSA 247
++ + G P ++ AL T G A+ A F E++ R + E
Sbjct: 172 LNDPETLG-----PSMAVALITTLYG------AILANGVFLPMAEKIKKRRDILVLEKRM 220
Query: 248 ILQRQVGI 255
IL+ + I
Sbjct: 221 ILEAVLSI 228
>gi|3915766|sp|Q44902|MOTA_BORBU CHEMOTAXIS MOTA PROTEIN (MOTILITY
PROTEIN A) >gi|1165266 (U43739) MotA [Borrelia
burgdorferi] >gi|2688185 (AE001137) flagellar motor
rotation protein A (motA) [Borrelia burgdorferi]
Length = 260
Score = 32.8 bits (73), Expect = 2.9
Identities = 23/90 (25%), Positives = 46/90 (50%), Gaps = 11/90 (12%)
Query: 133 RIQIEGAQ-RVMRTNFMREMDQLERNLELLANIGST----APYVGLVGTVFGIMVTMHDM 187
R+ ++GA V+RT E+DQ++ ++ +++ T AP G+ GT+ G++ +
Sbjct: 113 RLVVDGADPEVIRTMLYLELDQMQERHKVGSDLFKTWAKLAPAFGMTGTLIGLVALL--- 169
Query: 188 ISSGDQAGIAAVAPGISEALFATAVGLFVA 217
G+ +A+ ++ AL T G +A
Sbjct: 170 ---GNLEDKSALGSSMAVALITTLYGTIMA 196
>gi|1185053 (L75945) flagellar motor apparatus [Borrelia
burgdorferi]
Length = 260
Score = 32.8 bits (73), Expect = 2.9
Identities = 23/90 (25%), Positives = 46/90 (50%), Gaps = 11/90 (12%)
Query: 133 RIQIEGAQ-RVMRTNFMREMDQLERNLELLANIGST----APYVGLVGTVFGIMVTMHDM 187
R+ ++GA V+RT E+DQ++ ++ +++ T AP G+ GT+ G++ +
Sbjct: 113 RLVVDGADPEVIRTMLYLELDQMQERHKVGSDLFKTSRKLAPAFGMTGTLIGLVALL--- 169
Query: 188 ISSGDQAGIAAVAPGISEALFATAVGLFVA 217
G+ +A+ ++ AL T G +A
Sbjct: 170 ---GNLEDKSALGSSMAVALITTLYGTIMA 196
>gi|1172774|sp|P45174|PUTP_HAEIN SODIUM/PROLINE SYMPORTER (PROLINE
PERMEASE) >gi|1075316|pir||E64118 sodium/proline
symporter (proline permease) (putP) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1574814
(U32814) sodium/proline symporter (proline permease)
(putP) [Haemophilus influenzae Rd]
Length = 504
Score = 31.7 bits (70), Expect = 6.6
Identities = 15/47 (31%), Positives = 27/47 (56%), Gaps = 4/47 (8%)
Query: 58 GSFTSWVIIFRKARVFKQANREA----DQFENRFWSGTDLSKLYAST 100
G++ +W+++ + RV+ + N A + F NRF S L KL ++T
Sbjct: 85 GAYFNWLLVAGRLRVYTELNNNALTLPEYFHNRFGSSHKLLKLVSAT 131
>gi|6321492|ref|NP_011569.1|MUP1| high affinity methionine permease;
Mup1p >gi|1709181|sp|P50276|MUP1_YEAST HIGH AFFINITY
METHIONINE PERMEASE >gi|2132339|pir||S61943 methionine
transport protein, high affinity - yeast (Saccharomyces
cerevisiae) >gi|1101907 (U40316) high affinity
methionine permease [Saccharomyces cerevisiae]
>gi|1323067|emb|CAA97055| (Z72840) ORF YGR055w
[Saccharomyces cerevisiae]
Length = 574
Score = 31.7 bits (70), Expect = 6.6
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 147 FMREMDQLERNLELLANIGSTAPYVGLVGT-VFGIMVTMHDMISSGDQAGIAAVAPGISE 205
F E+DQ E+ L +L+ IG ++GT VF + T++ + S +
Sbjct: 50 FATELDQGEKQLGILSCIGLICNR--MLGTGVFAVSSTIYTLCGS------------VGL 95
Query: 206 ALFATAVGLFVAIPAVWAYNRFTTRVER 233
AL AVG +AI ++ Y F T + +
Sbjct: 96 ALIMWAVGAIIAISGLYVYMEFGTAIPK 123
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.322 0.135 0.386
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54568146
Number of Sequences: 449381
Number of extensions: 1741584
Number of successful extensions: 3795
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3716
Number of HSP's gapped (non-prelim): 49
length of query: 257
length of database: 138,416,789
effective HSP length: 56
effective length of query: 201
effective length of database: 113,251,453
effective search space: 22763542053
effective search space used: 22763542053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 69 (31.3 bits)