BLASTP 2.0.10 [Aug-26-1999]
Query= XF-07C01E-GL04
(135 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|3810893|dbj|BAA34065| (AB016766) preprotein translocase SecE... 57 5e-08
gi|134400|sp|P16920|SECE_ECOLI PREPROTEIN TRANSLOCASE SECE SUBU... 55 3e-07
gi|6358644|gb|AAF07277.1|AF170176_3 (AF170176) 96% identity ove... 55 3e-07
gi|1173415|sp|P43805|SECE_HAEIN PREPROTEIN TRANSLOCASE SECE SUB... 47 8e-05
gi|849061|dbj|BAA09300| (D50624) SecE like protein [Streptomyce... 40 0.010
gi|1711365|sp|P36691|SECE_STRVG PREPROTEIN TRANSLOCASE SECE SUB... 40 0.010
gi|3024607|sp|P96929|SECE_MYCTU PROBABLE PREPROTEIN TRANSLOCASE... 37 0.068
gi|585980|sp|P38382|SECE_SYNY3 PREPROTEIN TRANSLOCASE SECE SUBU... 36 0.15
gi|1711364|sp|P36690|SECE_STRGR PREPROTEIN TRANSLOCASE SECE SUB... 36 0.15
gi|541484|pir||S41060 secE protein - Streptomyces griseus >gi|4... 36 0.15
gi|1711363|sp|P52853|SECE_STRGB PREPROTEIN TRANSLOCASE SECE SUB... 36 0.15
gi|1711361|sp|P50054|SECE_RICPR PREPROTEIN TRANSLOCASE SECE SUB... 36 0.20
gi|6094266|sp|O83263|SECE_TREPA PREPROTEIN TRANSLOCASE SECE SUB... 36 0.20
gi|6459840|gb|AAF11598.1|AE002041_2 (AE002041) preprotein trans... 35 0.26
gi|585981|sp|P38383|SECE_THETH PREPROTEIN TRANSLOCASE SECE SUBUNIT 35 0.34
gi|548912|sp|P36253|SECE_STACA PREPROTEIN TRANSLOCASE SECE SUBU... 34 0.59
gi|548915|sp|P35874|SECE_THEMA PREPROTEIN TRANSLOCASE SECE SUBU... 33 1.3
gi|1711362|sp|P50055|SECE_STRCO PREPROTEIN TRANSLOCASE SECE SUB... 32 1.7
gi|3914964|sp|O51356|SECE_BORBU PREPROTEIN TRANSLOCASE SECE SUB... 31 6.7
>gi|3810893|dbj|BAA34065| (AB016766) preprotein translocase SecE
subunit [Vibrio alginolyticus]
Length = 126
Score = 57.4 bits (136), Expect = 5e-08
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 71 TTAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 128
TT KG+ F ESR E+RKVVWPTRQE ++ T +V+ + +++L+L G D ++ +L
Sbjct: 62 TTTKGKAAISFAKESRMEVRKVVWPTRQETMQTTLIVLAVSIVMALVLWGIDGIMVRL 119
>gi|134400|sp|P16920|SECE_ECOLI PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|73082|pir||VXECSE protein-export protein secE -
Escherichia coli >gi|147800 (M30610) secE protein
[Escherichia coli] >gi|396320 (U00006) secE [Escherichia
coli] >gi|1790413 (AE000472) preprotein translocase
[Escherichia coli]
Length = 127
Score = 55.0 bits (130), Expect = 3e-07
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 72 TAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 131
T KG+ F E+R E+RKV+WPTRQE + T +V + ++SL+L G D ++ +L +
Sbjct: 62 TTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSF 121
>gi|6358644|gb|AAF07277.1|AF170176_3 (AF170176) 96% identity over
127 amino acids with E. coli protein-export protein
(SECE) (SW:P16920); contains similarity to Pfam domain
PF00584 (SecE), Score=96.3, E=6,2e-25, N=1 [Salmonella
typhimurium LT2]
Length = 127
Score = 55.0 bits (130), Expect = 3e-07
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 72 TAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 131
T KG+ F E+R E+RKV+WPTRQE + T +V + ++SL+L G D ++ +L +
Sbjct: 62 TTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSF 121
>gi|1173415|sp|P43805|SECE_HAEIN PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1075165|pir||F64088 preprotein translocase (secE)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573718 (U32754) preprotein translocase SecE subunit
(secE) [Haemophilus influenzae Rd]
Length = 106
Score = 46.9 bits (109), Expect = 8e-05
Identities = 25/54 (46%), Positives = 32/54 (58%)
Query: 72 TAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVI 125
T +G + R F +SR E RKVVWPTR EA + T +VI + I SL D +I
Sbjct: 41 TNQGTKARAFFNDSRTEARKVVWPTRAEARQTTLIVIGVTMIASLFFWAVDSII 94
>gi|849061|dbj|BAA09300| (D50624) SecE like protein [Streptomyces
virginiae]
Length = 121
Score = 39.9 bits (91), Expect = 0.010
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQK 127
ELRKVVWPTR + T VVIV + I+ L+ DF +K
Sbjct: 75 ELRKVVWPTRNQLTTYTTVVIVFVVIMIGLVTVIDFGFEK 114
>gi|1711365|sp|P36691|SECE_STRVG PREPROTEIN TRANSLOCASE SECE SUBUNIT
Length = 93
Score = 39.9 bits (91), Expect = 0.010
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQK 127
ELRKVVWPTR + T VVIV + I+ L+ DF +K
Sbjct: 47 ELRKVVWPTRNQLTTYTTVVIVFVVIMIGLVTVIDFGFEK 86
>gi|3024607|sp|P96929|SECE_MYCTU PROBABLE PREPROTEIN TRANSLOCASE
SECE SUBUNIT >gi|1877376|emb|CAB07097| (Z92772) secE
[Mycobacterium tuberculosis]
Length = 161
Score = 37.1 bits (84), Expect = 0.068
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 128
E+RKV+WP R++ + T VV+ + + L+ G D + KL
Sbjct: 115 EMRKVIWPNRKQMLTYTSVVLAFLAFMVALVAGADLGLTKL 155
>gi|585980|sp|P38382|SECE_SYNY3 PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1652500|dbj|BAA17421| (D90906) secretory protein
SecE [Synechocystis sp.]
Length = 81
Score = 36.0 bits (81), Expect = 0.15
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 81 FLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQ 130
F+ ++ EL KVVWP+RQ+ I + VI+M+ ++S ++ D + +T+
Sbjct: 26 FIAATKDELAKVVWPSRQQLISESVAVILMVILVSTVIYFVDQIFGWITK 75
>gi|1711364|sp|P36690|SECE_STRGR PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|603588|emb|CAA51295| (X72787) secretory protein SecE
[Streptomyces griseus]
Length = 95
Score = 36.0 bits (81), Expect = 0.15
Identities = 17/44 (38%), Positives = 26/44 (58%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 131
ELRKVVWPTR + T VVIV + ++ L+ D ++ ++
Sbjct: 49 ELRKVVWPTRSQLTTYTSVVIVFVVVMIGLVTVLDIGFARVVKY 92
>gi|541484|pir||S41060 secE protein - Streptomyces griseus
>gi|483835|dbj|BAA04280| (D17464) SecE [Streptomyces
griseus]
Length = 86
Score = 36.0 bits (81), Expect = 0.15
Identities = 17/44 (38%), Positives = 26/44 (58%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 131
ELRKVVWPTR + T VVIV + ++ L+ D ++ ++
Sbjct: 40 ELRKVVWPTRSQLTTYTSVVIVFVVVMIGLVTVLDMGFARVVKY 83
>gi|1711363|sp|P52853|SECE_STRGB PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1213237|emb|CAA65164.1| (X95916) membrane
translocase [Streptomyces galbus]
Length = 94
Score = 36.0 bits (81), Expect = 0.15
Identities = 17/36 (47%), Positives = 22/36 (60%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDF 123
ELRKVVWPTR + T VVI + I+ L+ D+
Sbjct: 48 ELRKVVWPTRNQLTSYTTVVIFFVAIMIRLVTVIDY 83
>gi|1711361|sp|P50054|SECE_RICPR PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|987967|emb|CAA90885| (Z54171) SecE protein
[Rickettsia prowazekii] >gi|3860701|emb|CAA14602|
(AJ235270) unknown (secE) [Rickettsia prowazekii]
Length = 66
Score = 35.6 bits (80), Expect = 0.20
Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 76 REFRGFLF--ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQWFL 133
RE++ + F + + E KV WP ++E I T VV+ + I SL+ D+ I + Q L
Sbjct: 3 REYKIYKFFEQVKQETYKVFWPNKKELIASTLVVVATVFIFSLICLVLDYSIHNIMQLLL 62
Query: 134 S 134
+
Sbjct: 63 T 63
>gi|6094266|sp|O83263|SECE_TREPA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|3322505 (AE001205) preprotein translocase subunit
(secE) [Treponema pallidum]
Length = 59
Score = 35.6 bits (80), Expect = 0.20
Identities = 19/56 (33%), Positives = 28/56 (49%)
Query: 77 EFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQWF 132
+F F E E R+VVWP R + VV+V +++L LG D + L +F
Sbjct: 3 KFAKFRRECVAEFRRVVWPARTQVHTAVKVVLVSTVVMALFLGLIDALFVALLSFF 58
>gi|6459840|gb|AAF11598.1|AE002041_2 (AE002041) preprotein
translocase, SecE subunit [Deinococcus radiodurans]
Length = 61
Score = 35.2 bits (79), Expect = 0.26
Identities = 13/41 (31%), Positives = 26/41 (62%)
Query: 84 ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFV 124
++R EL +V WP+RQ+ + T V++ + L+L++ D +
Sbjct: 9 DAREELSRVTWPSRQDVLEGTQAVLIFVVALTLIVWALDLL 49
>gi|585981|sp|P38383|SECE_THETH PREPROTEIN TRANSLOCASE SECE SUBUNIT
Length = 60
Score = 34.8 bits (78), Expect = 0.34
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 84 ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 128
E+R EL +V WPTR++ + T +++ + LG +D V + L
Sbjct: 11 EARAELARVTWPTREQVVEGTQAILLFTLAFMVYLGLYDTVFRFL 55
>gi|548912|sp|P36253|SECE_STACA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|487094|pir||S38869 protein-export protein secE -
Staphylococcus carnosus >gi|426472|emb|CAA53737|
(X76134) secE [Staphylococcus carnosus]
Length = 65
Score = 34.0 bits (76), Expect = 0.59
Identities = 14/43 (32%), Positives = 23/43 (52%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQ 130
E+ K WPT++E ++ T +VIV + + D I KL +
Sbjct: 20 EMEKTSWPTKEEILKYTTIVIVTVVFFLIFFYALDLGIGKLIE 62
>gi|548915|sp|P35874|SECE_THEMA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|407023|emb|CAA77865| (Z11839) SecE [Thermotoga
maritima] >gi|4980958|gb|AAD35535.1|AE001723_5
(AE001723) preprotein translocase SecE subunit
[Thermotoga maritima]
Length = 65
Score = 32.8 bits (73), Expect = 1.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 77 EFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFV 124
+ R F E E +K+ WP+R+E + VV+V++ + S+ DF+
Sbjct: 3 KLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFI 50
>gi|1711362|sp|P50055|SECE_STRCO PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1084257|pir||S54716 secE protein - Streptomyces
coelicolor >gi|971287|dbj|BAA06984| (D32254) secE
[Streptomyces coelicolor] >gi|3493238 (AF071013) protein
translocase [Streptomyces lividans]
Length = 94
Score = 32.5 bits (72), Expect = 1.7
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDF 123
++RKVVWP+R + T VVI+ + I+ L+ D+
Sbjct: 48 DVRKVVWPSRNQLTTYTTVVIIFVVIMIGLVTLIDY 83
>gi|3914964|sp|O51356|SECE_BORBU PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|2688302 (AE001145) preprotein translocase subunit
(secE) [Borrelia burgdorferi]
Length = 56
Score = 30.5 bits (67), Expect = 6.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 81 FLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVI 125
F+ +S EL+KV WP E + V ++ +S+ LG D+++
Sbjct: 4 FIKDSILELKKVTWPKYNEVVGNGKQVFWLVLFVSIFLGIVDYLM 48
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.330 0.142 0.437
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24619655
Number of Sequences: 449381
Number of extensions: 611826
Number of successful extensions: 1382
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 19
length of query: 135
length of database: 138,416,789
effective HSP length: 48
effective length of query: 87
effective length of database: 116,846,501
effective search space: 10165645587
effective search space used: 10165645587
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 66 (30.1 bits)