BLASTP 2.0.10 [Aug-26-1999]
Query= XF-06D10-GL03
(226 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|138559|sp|P27078|VINT_BP434 INTEGRASE >gi|348452|pir||A45584... 75 7e-13
gi|138569|sp|P03700|VINT_LAMBD INTEGRASE >gi|75991|pir||RSBPIL ... 69 2e-11
gi|138560|sp|P16407|VINT_BPHK0 INTEGRASE >gi|76949|pir||S04990 ... 69 3e-11
gi|2781317|pdb|1AE9|A Chain A, Structure Of The Lambda Integras... 67 1e-10
gi|4490352|emb|CAB38715.1| (AJ236875) integrase-like protein [b... 67 2e-10
gi|4520380|dbj|BAA75916.1| (AB024602) similar to integrase [Pse... 63 2e-09
gi|6166382|gb|AAF04808.1| (AF165213) integrase [Bacteriophage D3] 53 2e-06
gi|1710383|sp|P46352|RIPX_BACSU PROBABLE INTEGRASE/RECOMBINASE ... 53 2e-06
gi|2618969 (AF017629) integrase [Bacteriophage 21] 50 2e-05
gi|2618957 (AF017625) integrase [Bacteriophage 21] >gi|2618960 ... 49 3e-05
gi|2618951 (AF017623) integrase [Bacteriophage 21] 49 4e-05
gi|2625019 (AF028736) site specific recombinase [Serratia marce... 48 5e-05
gi|2618948 (AF017622) integrase [Bacteriophage 21] 48 7e-05
gi|2618945 (AF017621) integrase [Bacteriophage 21] 48 7e-05
gi|2618954 (AF017624) integrase [Bacteriophage 21] >gi|2618966 ... 48 7e-05
gi|2145947|pir||S72959 probable integrase - Mycobacterium lepra... 48 7e-05
gi|2065218|emb|CAB08282| (Z95117) XerD [Mycobacterium leprae] 48 7e-05
gi|138558|sp|P27077|VINT_BPP21 INTEGRASE >gi|215450 (M61865) in... 48 9e-05
gi|2326744|emb|CAB10958| (Z98268) hypothetical protein Rv1701 [... 47 1e-04
gi|2497413|sp|P55888|XERC_SALTY INTEGRASE/RECOMBINASE XERC >gi|... 45 8e-04
gi|2645802 (AF033498) site-specific recombinase [Proteus mirabi... 44 0.001
gi|3024035|sp|P75969|INTE_ECOLI PROPHAGE LAMBDA INTEGRASE (INT(... 43 0.002
gi|96324|pir||C37841 probable site-specific recombinase xerC - ... 42 0.005
gi|3747042 (AF093548) tyrosine recombinase XerD [Staphylococcus... 41 0.007
gi|6648971|gb|AAF21314.1| (AF118839) site-specific recombinase ... 41 0.007
gi|139804|sp|P22885|XERC_ECOLI INTEGRASE/RECOMBINASE XERC 40 0.015
gi|139819|sp|P21891|XERD_ECOLI INTEGRASE/RECOMBINASE XERD >gi|9... 39 0.033
gi|944942|gb|AAA74432.1| (U32685) RipX [Bacillus subtilis] 39 0.033
gi|2497414|sp|P55889|XERD_SALTY INTEGRASE/RECOMBINASE XERD >gi|... 39 0.033
gi|2981658|pdb|1A0P| Site-Specific Recombinase, Xerd 39 0.033
gi|1550687|emb|CAB02354| (Z80225) hypothetical protein Rv2646 [... 38 0.057
gi|5738262|gb|AAB91569.2| (AF034855) ORF2; similar to Pseudomon... 38 0.075
gi|1175024|sp|P44818|XERC_HAEIN INTEGRASE/RECOMBINASE XERC >gi|... 38 0.075
gi|2645800 (AF033497) site-specific recombinase [Proteus mirabi... 38 0.099
gi|421191|pir||S30701 xerC protein - Escherichia coli >gi|14821... 37 0.17
gi|6137296|sp|Q10815|YS94_MYCTU PROBABLE INTEGRASE/RECOMBINASE ... 37 0.17
gi|4981505|gb|AAD36046.1|AE001759_10 (AE001759) integrase-recom... 37 0.17
gi|1175025|sp|P44630|XERD_HAEIN INTEGRASE/RECOMBINASE XERD >gi|... 36 0.22
gi|801874|dbj|BAA08929| (D50438) integrase [Serratia marcescens] 35 0.50
gi|3322673 (AE001217) integrase/recombinase (xprB) [Treponema p... 35 0.50
gi|1722878|sp|P54340|XKDU_BACSU PHAGE-LIKE ELEMENT PBSX PROTEIN... 34 1.1
gi|3095165 (AF055586) site-specific recombinase IntI4 [Vibrio c... 34 1.5
gi|4376276|gb|AAD18177| (AE001587) Integrase/recombinase [Chlam... 34 1.5
gi|5901798|gb|AAD55407.1|AF180939_1 (AF180939) site-specific in... 34 1.5
gi|5104468|dbj|BAA79783.1| (AP000060) 362aa long hypothetical i... 33 1.9
gi|215226 (M65194) integrase [Mycobacteriophage L5] >gi|2739060... 33 2.5
gi|465416|sp|P22884|VINT_BPML5 INTEGRASE >gi|419110|pir||S30978... 33 2.5
gi|6136260|sp|Q38361|VINT_BPMD2 INTEGRASE >gi|420403|pir||S3195... 32 3.3
gi|138563|sp|P25426|VINT_BPMFR INTEGRASE >gi|93029|pir||S22643 ... 32 3.3
gi|3172283 (AF022214) integrase; gp33 [Mycobacteriophage D29] 32 3.3
gi|2497415|sp|P55632|Y4QK_RHISN PUTATIVE INTEGRASE/RECOMBINASE ... 32 4.3
gi|3128300 (AF010496) integrase/recombinase [Rhodobacter capsul... 32 4.3
gi|4377356|gb|AAD19161| (AE001683) Integrase/recombinase [Chlam... 32 4.3
gi|3860920|emb|CAA14820| (AJ235271) INTEGRASE/RECOMBINASE XERD ... 32 5.7
gi|2731706|gb|AAC38070.1| (AF000001) Rci [Salmonella typhi] 31 7.4
gi|6330957|dbj|BAA86576.1| (AB033088) KIAA1262 protein [Homo sa... 31 7.4
gi|2621988 (AE000865) integrase-recombinase protein [Methanobac... 31 9.7
>gi|138559|sp|P27078|VINT_BP434 INTEGRASE >gi|348452|pir||A45584
integrase - phage 434 >gi|215353 (M60848) integrase
[Bacteriophage 434]
Length = 356
Score = 74.5 bits (180), Expect = 7e-13
Identities = 65/188 (34%), Positives = 94/188 (49%), Gaps = 11/188 (5%)
Query: 40 NPCGGIRRNKATGRDVYVDDTTYRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDER 96
NP R K+ R + Y +YQAA+ + L+ AM+LA +TGQRV D+ M
Sbjct: 163 NPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWS 222
Query: 97 QIIDGALEICQAKTGVKLAIAIT---GELAVLIKRIFDRKRGLKLRSTRLIVDAKGLELS 153
I+DG L + Q+KTGVK+AI T L + +K D+ + + L +I + LS
Sbjct: 223 DIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEI-LGGETIIASTRREPLS 281
Query: 154 RTGLRYRFDKARVAAGIAKE--VFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTE 211
+ F +AR A+G++ E F +LR+ +A D + AQ LGH S TM
Sbjct: 282 SGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISD-KFAQHLLGHKSDTMAS 340
Query: 212 HYVRKRRG 219
Y R RG
Sbjct: 341 QY-RDDRG 347
>gi|138569|sp|P03700|VINT_LAMBD INTEGRASE >gi|75991|pir||RSBPIL
integrase - phage lambda >gi|215133 (J02459) integration
protein [Bacteriophage lambda]
Length = 356
Score = 69.5 bits (167), Expect = 2e-11
Identities = 62/183 (33%), Positives = 93/183 (49%), Gaps = 18/183 (9%)
Query: 45 IRRNKATGRDVYVDDTTYRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDG 101
+RR++ T + Y +YQAA+ + L+ AM+LA +TGQRV D+ M I+DG
Sbjct: 175 VRRSRLTADE-------YLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDG 227
Query: 102 ALEICQAKTGVKLAIAIT---GELAVLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLR 158
L + Q+KTGVK+AI L + +K D+ + + L +I + LS +
Sbjct: 228 YLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEI-LGGETIIASTRREPLSSGTVS 286
Query: 159 YRFDKARVAAGIAKE--VFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 216
F +AR A+G++ E F +LR+ +A D + AQ LGH S TM Y R
Sbjct: 287 RYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISD-KFAQHLLGHKSDTMASQY-RD 344
Query: 217 RRG 219
RG
Sbjct: 345 DRG 347
>gi|138560|sp|P16407|VINT_BPHK0 INTEGRASE >gi|76949|pir||S04990
integrase - phage HK022 >gi|15760|emb|CAA36221| (X51962)
int gene product (AA 1-357) [Bacteriophage HK022]
Length = 357
Score = 69.1 bits (166), Expect = 3e-11
Identities = 66/187 (35%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 40 NPCGGIRRNKATGRDVYVDDTTYRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDER 96
NP R K+ R + Y A+Y AA+ L+ AMDLA +TGQRV D+ M
Sbjct: 163 NPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWS 222
Query: 97 QIIDGALEICQAKTGVKLAIAITGELAVLIKRIFDR-KRGLKLRSTRLIVDAKGLE-LSR 154
I D L I Q+KTG KLAI +T + L + D ++ + S+ I+ +K + LS
Sbjct: 223 DINDNHLHIEQSKTGAKLAIPLTLTIDALNISLADTLQQCREASSSETIIASKHHDPLSP 282
Query: 155 TGLRYRFDKARVAAGIAKE--VFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEH 212
+ F KAR A+G++ + F +LR+ +A + GD + AQ LGH S +M
Sbjct: 283 KTVSKYFTKARNASGLSFDGNPPTFHELRSLSARLYRNQIGD-KFAQRLLGHKSDSMAAR 341
Query: 213 YVRKRRG 219
Y R RG
Sbjct: 342 Y-RDSRG 347
>gi|2781317|pdb|1AE9|A Chain A, Structure Of The Lambda Integrase
Catalytic Core >gi|2781318|pdb|1AE9|B Chain B, Structure
Of The Lambda Integrase Catalytic Core
Length = 179
Score = 67.1 bits (161), Expect = 1e-10
Identities = 58/166 (34%), Positives = 86/166 (50%), Gaps = 11/166 (6%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
Y +YQAA+ + L+ AM+LA +TGQRV D+ M I+DG L + Q+KTGVK+AI
Sbjct: 9 YLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPT 68
Query: 119 T---GELAVLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKE-- 173
L + +K D+ + + L +I + LS + F +AR A+G++ E
Sbjct: 69 ALHIDALGISMKETLDKCKEI-LGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGD 127
Query: 174 VFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHYVRKRRG 219
F +LR+ +A D + AQ LGH S TM + R RG
Sbjct: 128 PPTFHELRSLSARLYEKQISD-KFAQHLLGHKSDTMASQF-RDDRG 171
>gi|4490352|emb|CAB38715.1| (AJ236875) integrase-like protein
[bacteriophage H19J]
Length = 357
Score = 66.7 bits (160), Expect = 2e-10
Identities = 65/187 (34%), Positives = 93/187 (48%), Gaps = 9/187 (4%)
Query: 40 NPCGGIRRNKATGRDVYVDDTTYRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDER 96
NP R K+ R + Y +Y AA+ L+ AMDLA +TGQRV D+ M
Sbjct: 163 NPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWS 222
Query: 97 QIIDGALEICQAKTGVKLAIAITGELAVLIKRIFDR-KRGLKLRSTRLIVDAKGLE-LSR 154
I D L I Q+KTG KLAI +T + L + D ++ + S+ I+ +K + LS
Sbjct: 223 DINDNHLHIEQSKTGAKLAIPLTLTIDALNISLADTLQKCREASSSETIIASKHHDPLSP 282
Query: 155 TGLRYRFDKARVAAGIAKE--VFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEH 212
+ F KAR A+G++ + F +LR+ +A + GD + AQ LGH S M
Sbjct: 283 KTVSKYFTKARNASGLSFDGNPPTFHELRSLSARLYRNQIGD-KFAQRLLGHKSDLMAAR 341
Query: 213 YVRKRRG 219
Y R RG
Sbjct: 342 Y-RDSRG 347
>gi|4520380|dbj|BAA75916.1| (AB024602) similar to integrase
[Pseudomonas putida]
Length = 399
Score = 63.2 bits (151), Expect = 2e-09
Identities = 67/219 (30%), Positives = 102/219 (45%), Gaps = 25/219 (11%)
Query: 21 SVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVYQ-AADRTLKDAMDL 79
S+ L+ A ++G D NP + + + + ++A+Y+ AA LK AM+L
Sbjct: 183 SLLRDLFMGAMARGWVDY-NPVEATKAARVKIKRQRLTLELWKAIYEEAAQPWLKRAMEL 241
Query: 80 AYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIA-------ITGELAVLIKRIFDR 132
A +TGQR D+ S R +DG L++ Q+KTG +L I+ I+ L +I+R DR
Sbjct: 242 ALITGQRREDIASFVFRDEVDGFLQVVQSKTGARLRISTSVTLECISLSLGEVIRRCRDR 301
Query: 133 KRGLKLRSTRLIVDAKGLELSRTGLRYRFD---KARVAAGIAKEVFQFRDLRAKAAT--D 187
+ S L+ + + ++ G D K AA V DL A T +
Sbjct: 302 -----VLSKHLVHHHRTISRAKAGSPIMLDTISKEFAAARDRAAVKLGLDLGASPPTFHE 356
Query: 188 KADLAGDI-----RQAQAQLGHASVTMTEHYVRKRRGAK 221
+ LA + R AQ LGH S MT+ Y R RGA+
Sbjct: 357 QRSLAARLHDEEGRDAQRLLGHRSAKMTDLY-RDSRGAE 394
>gi|6166382|gb|AAF04808.1| (AF165213) integrase [Bacteriophage D3]
Length = 369
Score = 53.5 bits (126), Expect = 2e-06
Identities = 60/217 (27%), Positives = 90/217 (40%), Gaps = 15/217 (6%)
Query: 7 LDWRTSKVIANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVY 66
LD S NRE++ S N ++ LPNP G + +A GRD ++ A+
Sbjct: 113 LDAGASPATINRELAALSAAINHCNTELEWALPNPVKGRKMREAEGRDRWLTRAEVEALC 172
Query: 67 QAA-----DRTLKDAMDLAYLTGQRVSDVVSMDERQIIDGA-----LEICQAKTGVKLAI 116
+AA L+D + LA TG R +++ ++ R+ +D A LE K G + +I
Sbjct: 173 RAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRR-VDFANRLIYLEASHTKAGKRRSI 231
Query: 117 AITGELAVLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQ 176
I +KR + + A G + L F +A AA IA F
Sbjct: 232 PINEGAMAALKRRMAFRSETSPECPWVFARANGDRV--ISLSAGFKQACQAAKIAD--FT 287
Query: 177 FRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
DLR A + + LGH++V MTE Y
Sbjct: 288 IHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERY 324
>gi|1710383|sp|P46352|RIPX_BACSU PROBABLE INTEGRASE/RECOMBINASE RIPX
>gi|1303994|dbj|BAA12649| (D84432) YqkM [Bacillus
subtilis] >gi|2634786|emb|CAB14283| (Z99116)
integrase/recombinase [Bacillus subtilis]
Length = 296
Score = 53.1 bits (125), Expect = 2e-06
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 74 KDAMDLAYLTGQRVSDVVSMDERQI-IDGALEICQAKTGVKLAIAITGELAVLIKRIFDR 132
K ++L Y TG RVS+++ + + + C K + + I A I+ +
Sbjct: 135 KAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTK 194
Query: 133 KRGLKLR---STRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKA 189
RG L+ S L ++ G ++SR G K + AGI KE+ LR AT
Sbjct: 195 ARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTP-HTLRHSFATHLL 253
Query: 190 DLAGDIRQAQAQLGHASVTMTEHYVRKRRGAKVTPTR 226
+ D+R Q LGHA ++ T+ Y VT TR
Sbjct: 254 EDGADLRAVQEMLGHADISTTQIYTH------VTKTR 284
>gi|2618969 (AF017629) integrase [Bacteriophage 21]
Length = 356
Score = 49.6 bits (116), Expect = 2e-05
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
++A++ + R LK M LA +TGQR+SD+ ++ I D L I Q KTG KLAI +
Sbjct: 177 WQAIFDSVSRRQPYLKCGMLLALVTGQRLSDICNLKFSDIWDDMLHITQEKTGSKLAIPL 236
Query: 119 T---GELAVLIKRIFDRKRG-------LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAA 168
L + ++ + + R + R T + +G ++S L F KAR
Sbjct: 237 NLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQAN-RGDQVSANTLTTAFKKAREKC 295
Query: 169 GIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
GI E + + + Q LGH S MT+ Y
Sbjct: 296 GIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRY 340
>gi|2618957 (AF017625) integrase [Bacteriophage 21] >gi|2618960
(AF017626) integrase [Bacteriophage 21] >gi|2618963
(AF017627) integrase [Bacteriophage 21]
Length = 356
Score = 49.2 bits (115), Expect = 3e-05
Identities = 46/165 (27%), Positives = 73/165 (43%), Gaps = 14/165 (8%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
++A++++ R LK M LA +TGQR+ D+ ++ I D L I Q KTG KLAI +
Sbjct: 177 WQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPL 236
Query: 119 T---GELAVLIKRIFDRKRG-------LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAA 168
+ L + ++ + + R + R T + +G ++S L F KAR
Sbjct: 237 SLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQAN-RGDQVSANTLTTAFKKAREKC 295
Query: 169 GIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
GI E + + + Q LGH S MT+ Y
Sbjct: 296 GIKWEPGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRY 340
>gi|2618951 (AF017623) integrase [Bacteriophage 21]
Length = 356
Score = 48.8 bits (114), Expect = 4e-05
Identities = 46/165 (27%), Positives = 72/165 (42%), Gaps = 14/165 (8%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
++A++++ R LK M LA +TGQR+ D+ ++ I D L I Q KTG KLAI +
Sbjct: 177 WQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPL 236
Query: 119 T---GELAVLIKRIFDRKRG-------LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAA 168
L + ++ + + R + R T + +G ++S L F KAR
Sbjct: 237 NLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQAN-RGDQVSANTLTTAFKKAREKC 295
Query: 169 GIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
GI E + + + Q LGH S MT+ Y
Sbjct: 296 GIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRY 340
>gi|2625019 (AF028736) site specific recombinase [Serratia
marcescens]
Length = 303
Score = 48.4 bits (113), Expect = 5e-05
Identities = 54/209 (25%), Positives = 93/209 (43%), Gaps = 10/209 (4%)
Query: 12 SKVIANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKA---TGRDVYVDDTTYRAVYQA 68
S +A R S+ S L +W S+G+ NP GIR ++ +++ VD+
Sbjct: 74 SASLALRLSSLRSFL-DWLVSQGVLHA-NPAKGIRTPRSGRHLPKNIDVDEMNQLLEIDL 131
Query: 69 ADRTL---KDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVL 125
D + +++ Y G R+S++V +D R + A E+ G K G AV
Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLPIGRTAVT 191
Query: 126 IKRIFDRKRGL-KLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKA 184
+ R L + + + +G +S ++ RF + V G+ + + LR
Sbjct: 192 WLEHWLAMRDLFGPQDDAMFLSNQGRRISTRNVQKRFAEWGVKQGVNSHIHPHK-LRHSF 250
Query: 185 ATDKADLAGDIRQAQAQLGHASVTMTEHY 213
AT + +GD+R Q LGHA++T T+ Y
Sbjct: 251 ATHMLESSGDLRAVQELLGHANLTTTQIY 279
>gi|2618948 (AF017622) integrase [Bacteriophage 21]
Length = 356
Score = 48.0 bits (112), Expect = 7e-05
Identities = 46/165 (27%), Positives = 71/165 (42%), Gaps = 14/165 (8%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
++A++++ R LK M LA +TGQR+ D+ + I D L I Q KTG KLAI +
Sbjct: 177 WQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNFKFSDIWDDMLHITQEKTGSKLAIPL 236
Query: 119 T---GELAVLIKRIFDRKRG-------LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAA 168
L + ++ + + R + R T + +G ++S L F KAR
Sbjct: 237 NLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQAN-RGDQVSANTLTTAFKKAREKC 295
Query: 169 GIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
GI E + + + Q LGH S MT+ Y
Sbjct: 296 GIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRY 340
>gi|2618945 (AF017621) integrase [Bacteriophage 21]
Length = 356
Score = 48.0 bits (112), Expect = 7e-05
Identities = 46/165 (27%), Positives = 71/165 (42%), Gaps = 14/165 (8%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
++A+++ R LK M LA +TGQR+ D+ ++ I D L I Q KTG KLAI +
Sbjct: 177 WQAIFEIVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPL 236
Query: 119 T---GELAVLIKRIFDRKRG-------LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAA 168
L + ++ + + R + R T + +G ++S L F KAR
Sbjct: 237 NLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQAN-RGDQVSANTLTTAFKKAREKC 295
Query: 169 GIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
GI E + + + Q LGH S MT+ Y
Sbjct: 296 GIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRY 340
>gi|2618954 (AF017624) integrase [Bacteriophage 21] >gi|2618966
(AF017628) integrase [Bacteriophage 21]
Length = 356
Score = 48.0 bits (112), Expect = 7e-05
Identities = 46/165 (27%), Positives = 71/165 (42%), Gaps = 14/165 (8%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
++A++ + R LK M LA +TGQR+ D+ ++ I D L I Q KTG KLAI +
Sbjct: 177 WQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPL 236
Query: 119 T---GELAVLIKRIFDRKRG-------LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAA 168
L + ++ + + R + R T + +G ++S L F KAR
Sbjct: 237 NLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQAN-RGDQVSANTLTTAFKKAREKC 295
Query: 169 GIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
GI E + + + Q LGH S MT+ Y
Sbjct: 296 GIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRY 340
>gi|2145947|pir||S72959 probable integrase - Mycobacterium leprae
>gi|467161 (U00021) u0247d [Mycobacterium leprae]
Length = 316
Score = 48.0 bits (112), Expect = 7e-05
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 77 MDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAV------LIKRIF 130
++L Y TG R+S+ V +D + A + G K + G AV L++
Sbjct: 153 LELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGGKQRLVPVGRPAVQALDAYLVRGRS 212
Query: 131 D-RKRGLKLRSTRLI-VDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDK 188
D +RG + +T I ++A+G LSR A AGI V LR AT
Sbjct: 213 DLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHAGITSGVSPHM-LRHSFATHL 271
Query: 189 ADLAGDIRQAQAQLGHASVTMTEHY 213
+ DIR Q +GHASVT T+ Y
Sbjct: 272 LEGGADIRVVQELMGHASVTTTQIY 296
>gi|2065218|emb|CAB08282| (Z95117) XerD [Mycobacterium leprae]
Length = 316
Score = 48.0 bits (112), Expect = 7e-05
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 77 MDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAV------LIKRIF 130
++L Y TG R+S+ V +D + A + G K + G AV L++
Sbjct: 153 LELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGGKQRLVPVGRPAVQALDAYLVRGRS 212
Query: 131 D-RKRGLKLRSTRLI-VDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDK 188
D +RG + +T I ++A+G LSR A AGI V LR AT
Sbjct: 213 DLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHAGITSGVSPHM-LRHSFATHL 271
Query: 189 ADLAGDIRQAQAQLGHASVTMTEHY 213
+ DIR Q +GHASVT T+ Y
Sbjct: 272 LEGGADIRVVQELMGHASVTTTQIY 296
>gi|138558|sp|P27077|VINT_BPP21 INTEGRASE >gi|215450 (M61865)
integrase [Bacteriophage 21]
Length = 380
Score = 47.6 bits (111), Expect = 9e-05
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 62 YRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
++A++++ R LK M LA +TGQR+ D+ ++ I D L I Q KTG KLAI +
Sbjct: 201 WQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPL 260
Query: 119 T---GELAVLIKRIFDRKRG-------LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAA 168
L + ++ + + R + R T + +G ++S L F KA+
Sbjct: 261 NLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQAN-RGDQVSANTLTTAFKKAKEKC 319
Query: 169 GIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
GI E + + + Q LGH S MT+ Y
Sbjct: 320 GIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRY 364
>gi|2326744|emb|CAB10958| (Z98268) hypothetical protein Rv1701
[Mycobacterium tuberculosis]
Length = 311
Score = 47.3 bits (110), Expect = 1e-04
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 77 MDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAV------LIKRIF 130
++L Y TG R+S+ V +D I A + G K + G AV L++
Sbjct: 151 LELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRP 210
Query: 131 DRKRGLKLRSTRLI-VDAKGLELSRTG----LRYRFDKARVAAGIAKEVFQFRDLRAKAA 185
D R + R T I ++A+G LSR L+ ++A + AG++ + LR A
Sbjct: 211 DLAR--RGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGITAGVSPHM-----LRHSFA 263
Query: 186 TDKADLAGDIRQAQAQLGHASVTMTEHY 213
T + D+R Q LGHASVT T+ Y
Sbjct: 264 THLLEGGADVRVVQELLGHASVTTTQIY 291
>gi|2497413|sp|P55888|XERC_SALTY INTEGRASE/RECOMBINASE XERC
>gi|1916339 (U92525) site-specific recombinase
[Salmonella typhimurium]
Length = 300
Score = 44.5 bits (103), Expect = 8e-04
Identities = 51/206 (24%), Positives = 87/206 (41%), Gaps = 19/206 (9%)
Query: 20 VSVFSHLWNWARSKGITDLPNPCGGIRRNKATG---RDVYVDDTTYRAVYQAADRTLKDA 76
+S ++W S+G NP G+ KA +++ VDD V + D L D
Sbjct: 79 LSALRSFFDWLVSQGELKA-NPAKGVSAPKAPRHLPKNIDVDD-----VNRLLDIDLNDP 132
Query: 77 M--------DLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVL-IK 127
+ ++ Y G R+S++V +D + + E+ G K G AV I+
Sbjct: 133 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIE 192
Query: 128 RIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATD 187
D + L + G +S ++ RF + + G+ V + LR AT
Sbjct: 193 HWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHK-LRHSFATH 251
Query: 188 KADLAGDIRQAQAQLGHASVTMTEHY 213
+ +GD+R Q LGHA+++ T+ Y
Sbjct: 252 MLESSGDLRGVQELLGHANLSTTQIY 277
>gi|2645802 (AF033498) site-specific recombinase [Proteus mirabilis]
Length = 307
Score = 44.1 bits (102), Expect = 0.001
Identities = 50/197 (25%), Positives = 89/197 (44%), Gaps = 16/197 (8%)
Query: 28 NWARSKGITDLPNPCGGIRRNKA---TGRDVYVDDTTY------RAVYQAADRTLKDAMD 78
+W S+G+ + NP G+R K+ +++ VD+ + + DRT+ + M
Sbjct: 92 DWQVSQGMLAV-NPAKGVRTPKSGRHLPKNMDVDEVSQLMNIDLKDPLSVRDRTMLEVM- 149
Query: 79 LAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAV-LIKRIFDRKRGLK 137
Y G R+S++ +++ I E+ G K G AV ++ F +
Sbjct: 150 --YGAGLRLSELTNLNINDIDLQEGEVRVLGKGSKERKVPLGRKAVEWLQHWFAMRELYS 207
Query: 138 LRSTRLIVDAK-GLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIR 196
T + + K G LS ++ RF+ V G++ V + LR AT + +GD+R
Sbjct: 208 PEDTAVFISTKSGKRLSVRSVQKRFELWGVKQGLSSHVNPHK-LRHSFATHLLESSGDLR 266
Query: 197 QAQAQLGHASVTMTEHY 213
Q LGHA+++ T+ Y
Sbjct: 267 AVQELLGHANLSTTQVY 283
>gi|3024035|sp|P75969|INTE_ECOLI PROPHAGE LAMBDA INTEGRASE
(INT(LAMBDA)) (PROPHAGE E14 INTEGRASE) >gi|1787386
(AE000214) prophage e14 integrase [Escherichia coli]
>gi|4062718|dbj|BAA35969| (D90749) Integrase.
[Escherichia coli]
Length = 375
Score = 43.4 bits (100), Expect = 0.002
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 47 RNKATGRDVYVDDTTYRAVYQAADRT---LKDAMDLAYLTGQRVSDVVSMDERQIIDGAL 103
R K T + + +++ ++ ++ AD T + +AM LA +TGQR+ D+ M I D L
Sbjct: 186 RRKITRQRLSLEE--WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243
Query: 104 EICQAKTGVKLAI-------AITGELAVLIKRIFDRKRGLKL----RSTRLIVDAKGLEL 152
+ Q KTG K+AI AI L ++ R D L RST +G ++
Sbjct: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA--ERGAQV 301
Query: 153 SRTGLRYRFDKARVAAGI 170
L F KAR A I
Sbjct: 302 KANTLTMNFSKARDLARI 319
>gi|96324|pir||C37841 probable site-specific recombinase xerC -
Escherichia coli >gi|148270 (M38257) lambda-integrase
[Escherichia coli] >gi|1790244 (AE000457) site-specific
recombinase, acts on cer sequence of ColE1, effects
chromosome segregation at cell division [Escherichia
coli]
Length = 298
Score = 41.8 bits (96), Expect = 0.005
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 40 NPCGGIRRNKATG---RDVYVDDTTYRAVYQAADRTL---KDAMDLAYLTGQRVSDVVSM 93
NP G+ KA +++ VDD D + +++ Y G R+S++V +
Sbjct: 96 NPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGL 155
Query: 94 DERQIIDGALEICQAKTGVKLAIAITGELAVL-IKRIFDRKRGLKLRSTRLIVDAKGLEL 152
D + + + E+ G K G AV I+ D + L + G +
Sbjct: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRI 215
Query: 153 SRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEH 212
S ++ RF + + G+ V + LR AT + +GD+R Q LGHA+++ T+
Sbjct: 216 SARNVQKRFAEWGIKQGLNNHVHPHK-LRHSFATHMLESSGDLRGVQELLGHANLSTTQI 274
Query: 213 Y 213
Y
Sbjct: 275 Y 275
>gi|3747042 (AF093548) tyrosine recombinase XerD [Staphylococcus
aureus]
Length = 295
Score = 41.4 bits (95), Expect = 0.007
Identities = 43/150 (28%), Positives = 69/150 (45%), Gaps = 12/150 (8%)
Query: 70 DRTLKDAMDLAYLTGQRVSDVVSMDERQI--IDGALEIC---QAKTGVKLAIAITGELAV 124
DRT+ ++L Y TG RVS+++ ++ + I G + + + V L A+ L
Sbjct: 133 DRTM---LELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAVIEYLTT 189
Query: 125 LIKRIFDRKRGLKLRSTR-LIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAK 183
I+ I R + LK T L ++ G LSR + + V A I K + LR
Sbjct: 190 YIETI--RPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP-HTLRHS 246
Query: 184 AATDKADLAGDIRQAQAQLGHASVTMTEHY 213
AT + D+R Q LGH+ ++ T+ Y
Sbjct: 247 FATHLLENGADLRAVQEMLGHSDISTTQLY 276
>gi|6648971|gb|AAF21314.1| (AF118839) site-specific recombinase
[Staphylococcus aureus]
Length = 293
Score = 41.4 bits (95), Expect = 0.007
Identities = 43/150 (28%), Positives = 69/150 (45%), Gaps = 12/150 (8%)
Query: 70 DRTLKDAMDLAYLTGQRVSDVVSMDERQI--IDGALEIC---QAKTGVKLAIAITGELAV 124
DRT+ ++L Y TG RVS+++ ++ + I G + + + V L A+ L
Sbjct: 133 DRTM---LELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAVIEYLTT 189
Query: 125 LIKRIFDRKRGLKLRSTR-LIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAK 183
I+ I R + LK T L ++ G LSR + + V A I K + LR
Sbjct: 190 YIETI--RPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP-HTLRHS 246
Query: 184 AATDKADLAGDIRQAQAQLGHASVTMTEHY 213
AT + D+R Q LGH+ ++ T+ Y
Sbjct: 247 FATHLLENGADLRAVQEMLGHSDISTTQLY 276
>gi|139804|sp|P22885|XERC_ECOLI INTEGRASE/RECOMBINASE XERC
Length = 298
Score = 40.2 bits (92), Expect = 0.015
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 8/181 (4%)
Query: 40 NPCGGIRRNKATG---RDVYVDDTTYRAVYQAADRTL---KDAMDLAYLTGQRVSDVVSM 93
NP G+ KA +++ VDD D + +++ Y G R+S++V +
Sbjct: 96 NPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGL 155
Query: 94 DERQIIDGALEICQAKTGVKLAIAITGELAVL-IKRIFDRKRGLKLRSTRLIVDAKGLEL 152
D + + + E+ G K G V I+ D + L + G +
Sbjct: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRKPVAWIEHWLDLRDLFGSEDDALFLSKLGKRI 215
Query: 153 SRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEH 212
S ++ RF + + G+ V + LR AT + +GD+R Q LGHA+++ T+
Sbjct: 216 SARNVQKRFAEWGIKQGLNNHVHPHK-LRHSFATHMLESSGDLRGVQELLGHANLSTTQI 274
Query: 213 Y 213
Y
Sbjct: 275 Y 275
>gi|139819|sp|P21891|XERD_ECOLI INTEGRASE/RECOMBINASE XERD
>gi|96549|pir||A39202 recombinase XerD - Escherichia
coli >gi|147548 (M54884) xprB [Escherichia coli]
>gi|887844 (U28375) site-specific integrase/recombinase,
with xerC [Escherichia coli] >gi|1789261 (AE000373)
site-specific recombinase [Escherichia coli]
Length = 298
Score = 39.1 bits (89), Expect = 0.033
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 74 KDAMDLAYLTGQRVSDVV--SMDERQIIDGALEICQAKTGVKLAIAITGELAVL-IKRIF 130
K +++ Y TG RVS++V +M + + G + + G K + GE AV ++
Sbjct: 136 KAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK--GNKERLVPLGEEAVYWLETYL 193
Query: 131 DRKRGLKLRSTRLIV---DAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATD 187
+ R L + V + +++R +R V AGI E LR AT
Sbjct: 194 EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 253
Query: 188 KADLAGDIRQAQAQLGHASVTMTEHY 213
+ D+R Q LGH+ ++ T+ Y
Sbjct: 254 LLNHGADLRVVQMLLGHSDLSTTQIY 279
>gi|944942|gb|AAA74432.1| (U32685) RipX [Bacillus subtilis]
Length = 163
Score = 39.1 bits (89), Expect = 0.033
Identities = 41/157 (26%), Positives = 66/157 (41%), Gaps = 12/157 (7%)
Query: 74 KDAMDLAYLTGQRVSDVVSMDERQI-IDGALEICQAKTGVKLAIAITGELAVLIKRIFDR 132
K ++L Y TG RVS+++ + + + C K + + I A I+ +
Sbjct: 3 KAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTK 62
Query: 133 KRGLKLR---STRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKA 189
RG L+ S L ++ G S + +K R+ + KE+ LR AT
Sbjct: 63 ARGKLLKNNVSDALFLNHHG-NRSAARILEEPEKNRIGSRHKKELTP-HTLRHSFATHLL 120
Query: 190 DLAGDIRQAQAQLGHASVTMTEHYVRKRRGAKVTPTR 226
+ D+R Q LGHA ++ T+ Y VT TR
Sbjct: 121 ENGADLRAVQEMLGHADISTTQIYTH------VTKTR 151
>gi|2497414|sp|P55889|XERD_SALTY INTEGRASE/RECOMBINASE XERD
>gi|1916335 (U92524) site-specific recombinase
[Salmonella typhimurium]
Length = 298
Score = 39.1 bits (89), Expect = 0.033
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 74 KDAMDLAYLTGQRVSDVV--SMDERQIIDGALEICQAKTGVKLAIAITGELAVL-IKRIF 130
K +++ Y TG RVS++V +M + + G + + G K + GE AV ++
Sbjct: 136 KAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK--GNKERLVPLGEEAVYWLETYL 193
Query: 131 DRKRGLKLRSTRLIV---DAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATD 187
+ R L + V + +++R +R V AGI E LR AT
Sbjct: 194 EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 253
Query: 188 KADLAGDIRQAQAQLGHASVTMTEHY 213
+ D+R Q LGH+ ++ T+ Y
Sbjct: 254 LLNHGADLRVVQMLLGHSDLSTTQIY 279
>gi|2981658|pdb|1A0P| Site-Specific Recombinase, Xerd
Length = 290
Score = 39.1 bits (89), Expect = 0.033
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 74 KDAMDLAYLTGQRVSDVV--SMDERQIIDGALEICQAKTGVKLAIAITGELAVL-IKRIF 130
K +++ Y TG RVS++V +M + + G + + G K + GE AV ++
Sbjct: 134 KAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK--GNKERLVPLGEEAVYWLETYL 191
Query: 131 DRKRGLKLRSTRLIV---DAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATD 187
+ R L + V + +++R +R V AGI E LR AT
Sbjct: 192 EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 251
Query: 188 KADLAGDIRQAQAQLGHASVTMTEHY 213
+ D+R Q LGH+ ++ T+ Y
Sbjct: 252 LLNHGADLRVVQMLLGHSDLSTTQIY 277
>gi|1550687|emb|CAB02354| (Z80225) hypothetical protein Rv2646
[Mycobacterium tuberculosis]
Length = 332
Score = 38.3 bits (87), Expect = 0.057
Identities = 39/155 (25%), Positives = 62/155 (39%), Gaps = 15/155 (9%)
Query: 59 DTTYRAVYQAADRTLKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAI 118
D ++A ADR ++ + LA G R ++ ++DG L + K G + + I
Sbjct: 177 DDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPI 236
Query: 119 TGELAVLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFR 178
+ LA LI+ D G L + G L+ + +A
Sbjct: 237 SDYLAALIR---DTPHGY------LFPNGTGGHLTAEHVGKLVSRALPGDA------TMH 281
Query: 179 DLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
LR + AT + ++R Q LGHAS+ TE Y
Sbjct: 282 TLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERY 316
>gi|5738262|gb|AAB91569.2| (AF034855) ORF2; similar to Pseudomonas
integrase-like protein encoded by X98999 [Agrobacterium
tumefaciens]
Length = 363
Score = 37.9 bits (86), Expect = 0.075
Identities = 45/185 (24%), Positives = 76/185 (40%), Gaps = 34/185 (18%)
Query: 43 GGIRRNKATGRDVYVDDTTY-RAVYQAADRTLKDAMDLAYLTGQRVSDVVSMDERQIIDG 101
GG RR++ G D+ D T R + D+ + + L TG R ++ R D
Sbjct: 190 GGFRRSEIVGLDLKADQTEDGRGWIEILDKGM--LVTLRGKTGWREVEI----GRGSSDA 243
Query: 102 ALEICQAKTGVKLAIAITGEL---------AVLIKRIFDRKRGLKLRSTRLIVDAKGLEL 152
+ +T +K A G L +V +R+ D++ ++ T + +G +L
Sbjct: 244 TCPVANVETWIKFAKLAHGPLFRRVTGQGKSVGSERLNDKEIARLVKRTAMAAGIRG-DL 302
Query: 153 SRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEH 212
+ +++F + AG+A + A D+ R Q LGHAS MT
Sbjct: 303 AEIERQFKFSGHSLRAGLA----------SSAEVDE-------RYVQKHLGHASAEMTRR 345
Query: 213 YVRKR 217
Y R+R
Sbjct: 346 YQRRR 350
>gi|1175024|sp|P44818|XERC_HAEIN INTEGRASE/RECOMBINASE XERC
>gi|1074932|pir||F64085 integrase-recombinase protein
(xerC) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573676 (U32750) integrase/recombinase (xerC)
[Haemophilus influenzae Rd]
Length = 295
Score = 37.9 bits (86), Expect = 0.075
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 77 MDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVLIKRIFDRKRGL 136
++L Y +G R+S++ +D I E+ G K + G A + + + R L
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195
Query: 137 -KLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDI 195
+ L V G +S ++ R + + G+ + + LR AT + + D+
Sbjct: 196 FNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHK-LRHSFATHMLEASSDL 254
Query: 196 RQAQAQLGHASVTMTEHY 213
R Q LGH++++ T+ Y
Sbjct: 255 RAVQELLGHSNLSTTQIY 272
>gi|2645800 (AF033497) site-specific recombinase [Proteus mirabilis]
Length = 313
Score = 37.5 bits (85), Expect = 0.099
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 74 KDAMDLAYLTGQRVSDVV--SMDERQIIDGALEICQAKTGVKLAIAITGELAV--LIKRI 129
K +++ Y G RVS++V S+ + + G L + G K + GE A+ L + +
Sbjct: 151 KAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGK--GDKERLVPLGEEAIYWLEQYL 208
Query: 130 FDRKRGLKLRSTRLIV--DAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATD 187
+ L T IV +G +++R +R V AGI E LR AT
Sbjct: 209 QYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDSEKLSPHVLRHAFATH 268
Query: 188 KADLAGDIRQAQAQLGHASVTMTEHY 213
+ D+R Q LGH+ ++ T+ Y
Sbjct: 269 LLNHGADLRVVQMLLGHSDLSTTQIY 294
>gi|421191|pir||S30701 xerC protein - Escherichia coli >gi|148210
(M87049) member of the lambda integrase family of
site-specific recombinases [Escherichia coli]
Length = 298
Score = 36.7 bits (83), Expect = 0.17
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 8/181 (4%)
Query: 40 NPCGGIRRNKATG---RDVYVDDTTYRAVYQAADRTL---KDAMDLAYLTGQRVSDVVSM 93
NP G+ KA +++ VDD D + +++ Y G R+S++V +
Sbjct: 96 NPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGL 155
Query: 94 DERQIIDGALEICQAKTGVKLAIAITGELAVL-IKRIFDRKRGLKLRSTRLIVDAKGLEL 152
D + + + E+ G K G V I+ D + L + G
Sbjct: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRKPVAWIEHWLDLRDLFGSEDDALFLSKLGKRX 215
Query: 153 SRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEH 212
S ++ RF + + G+ V + L AT + +GD+R Q LGHA+++ T+
Sbjct: 216 SARNVQKRFAEWGIKQGLNNHVHPHK-LXHSFATHMLESSGDLRGVQELLGHANLSTTQI 274
Query: 213 Y 213
Y
Sbjct: 275 Y 275
>gi|6137296|sp|Q10815|YS94_MYCTU PROBABLE INTEGRASE/RECOMBINASE
RV2894C >gi|3250705|emb|CAA98378| (Z74024) xerC
[Mycobacterium tuberculosis]
Length = 298
Score = 36.7 bits (83), Expect = 0.17
Identities = 39/141 (27%), Positives = 60/141 (41%), Gaps = 5/141 (3%)
Query: 77 MDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAV--LIKRIFDRKR 134
++L Y TG RVS++ +D I G + G K G+ A L + D +R
Sbjct: 140 VELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRR 199
Query: 135 GLKLRST--RLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLA 192
L + L++ A+G L R + A A ++ LR AAT +
Sbjct: 200 ALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGP-HGLRHSAATHLLEGG 258
Query: 193 GDIRQAQAQLGHASVTMTEHY 213
D+R Q LGH+S+ T+ Y
Sbjct: 259 ADLRVVQELLGHSSLATTQLY 279
>gi|4981505|gb|AAD36046.1|AE001759_10 (AE001759)
integrase-recombinase protein [Thermotoga maritima]
Length = 253
Score = 36.7 bits (83), Expect = 0.17
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 45/219 (20%)
Query: 3 IRQYLDWRTSKVIANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYVDDTTY 62
++ YL+WR + + N E WN A T LP I ++ D+ Y
Sbjct: 62 VKNYLNWRADRGLLNAE----ERFWNEAEPPRHTVLPK---AIELDEVRRIIEACDNPLY 114
Query: 63 RAVYQAADRTLKDAMDLAYLTGQRVSDVV--SMDERQIIDGALEICQAKTGVKLAIAITG 120
RA+++ TG RVS++V S+ + + + A + K + I ++
Sbjct: 115 RAIFKVLAN-----------TGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINVSK 163
Query: 121 ELA--VLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQ-- 176
EL ++ F++K ++ + R RY AR AGI K+V
Sbjct: 164 ELVEELMNSGFFEKKPSVR-------------SIQRAVKRY----AR-KAGIKKKVTPHI 205
Query: 177 FRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHYVR 215
FR A A ++ + + QA LGHA+++ T Y++
Sbjct: 206 FRHSFAVALIER---GVPLNKIQALLGHANISTTSIYLK 241
>gi|1175025|sp|P44630|XERD_HAEIN INTEGRASE/RECOMBINASE XERD
>gi|1074933|pir||A64061 integrase/recombinase (xprB)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573278 (U32716) integrase/recombinase (xerD)
[Haemophilus influenzae Rd]
Length = 297
Score = 36.4 bits (82), Expect = 0.22
Identities = 36/146 (24%), Positives = 65/146 (43%), Gaps = 8/146 (5%)
Query: 74 KDAMDLAYLTGQRVSDVVSM--DERQIIDGALEICQAKTGVKLAIAITGELAVLIKR--- 128
K ++L Y TG RV+++VS+ + + G + + G K I GE A R
Sbjct: 135 KAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGK--GNKERIVPMGEEAAYWVRQFM 192
Query: 129 IFDRKRGLKLRSTRLIVDA-KGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATD 187
++ R L +S+ ++ + + +++R +R + A I + LR AT
Sbjct: 193 LYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHVLRHAFATH 252
Query: 188 KADLAGDIRQAQAQLGHASVTMTEHY 213
+ D+R Q LGH ++ T+ Y
Sbjct: 253 LVNHGADLRVVQMLLGHTDLSTTQIY 278
>gi|801874|dbj|BAA08929| (D50438) integrase [Serratia marcescens]
Length = 346
Score = 35.2 bits (79), Expect = 0.50
Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 140 STRLIVDAK-GLE----LSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGD 194
S +L VD + G+E L L + KA V AGIAK V LR AT D
Sbjct: 244 SAKLSVDPQTGVERRHHLFEERLNRQLKKAVVQAGIAKHV-SVHTLRHSFATHLLQAGTD 302
Query: 195 IRQAQAQLGHASVTMTEHY 213
IR Q LGH+ V+ T Y
Sbjct: 303 IRTVQELLGHSDVSTTMIY 321
>gi|3322673 (AE001217) integrase/recombinase (xprB) [Treponema
pallidum]
Length = 297
Score = 35.2 bits (79), Expect = 0.50
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 79 LAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVLIKRIFDRKRGLKL 138
+ Y TG RVS++ ++ + + G + A ++ + R +
Sbjct: 140 MLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERTVFIAPFAQNFLHVYMQARAQRC 199
Query: 139 R-----STRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRD--LRAKAATDKADL 191
+ L V+ +G LS G++Y + + +A++V R A+
Sbjct: 200 ARYASCTPALFVNQRGRSLSVRGIQYLVSRYVL---LAQDVHALSPHAFRHSFASTLIRR 256
Query: 192 AGDIRQAQAQLGHASVTMTEHYV 214
D+R AQ LGHASV+ T+ YV
Sbjct: 257 GADVRVAQELLGHASVSTTQRYV 279
>gi|1722878|sp|P54340|XKDU_BACSU PHAGE-LIKE ELEMENT PBSX PROTEIN
XKDT >gi|1225958|emb|CAA94042| (Z70177) homologous to
yqcA of the skin element [Bacillus subtilis]
>gi|2633628|emb|CAB13131| (Z99110) PBSX prophage
[Bacillus subtilis]
Length = 192
Score = 34.0 bits (76), Expect = 1.1
Identities = 27/101 (26%), Positives = 50/101 (48%), Gaps = 5/101 (4%)
Query: 27 WNWARSKGITDLPNPCGG---IRRNKATGRDVYVDDTTYRAVYQAADRTLKD-AMDLAYL 82
W +R + I ++P G IRR + + + TYRA+ QA +R LK+ + + L
Sbjct: 53 WGLSRWEKILNVPRESGDTDEIRRLRLISKMSNIPPITYRAIEQAVNRFLKNPSAQVRLL 112
Query: 83 TGQ-RVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGEL 122
G+ R + +++D+ Q ++ +E + LA + G L
Sbjct: 113 PGEYRFNVDINVDDLQHMNELIEAIENMKPAHLAYTLRGGL 153
>gi|3095165 (AF055586) site-specific recombinase IntI4 [Vibrio
cholerae] >gi|5825613|gb|AAD53319.1|AF179591_1
(AF179591) site-specific recombinase IntI4 [Vibrio
cholerae]
Length = 320
Score = 33.6 bits (75), Expect = 1.5
Identities = 22/62 (35%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Query: 152 LSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTE 211
++ T L+ ++ AGI K V LR AT ++ DIR Q QLGH V T+
Sbjct: 242 MNETVLQKAVRRSAQEAGIEKTV-TCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ 300
Query: 212 HY 213
Y
Sbjct: 301 IY 302
>gi|4376276|gb|AAD18177| (AE001587) Integrase/recombinase [Chlamydia
pneumoniae]
Length = 312
Score = 33.6 bits (75), Expect = 1.5
Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 77 MDLAYLTGQRVSDVVSMDERQIIDGALEICQAK-TGVKLAIAITGELAVLIKRIF----D 131
M+L Y +G R+S++V+++ +Q D + + + + G K I A+ +I+ D
Sbjct: 155 MELFYSSGLRISEIVAVN-KQDFDLSTHLIRIRGKGKKERIIPVTSNAIQWIQIYLNHPD 213
Query: 132 RKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADL 191
RKR L+ + ++ G +S + F + +G++ + +R AT +
Sbjct: 214 RKR-LEKDPQAIFLNRFGRRISTRSIDRSFQEYLRRSGLSGHITP-HTIRHTIATHWLES 271
Query: 192 AGDIRQAQAQLGHASVTMTEHYVR 215
D++ QA LGH+S+ T Y +
Sbjct: 272 GMDLKTIQALLGHSSLETTTVYTQ 295
>gi|5901798|gb|AAD55407.1|AF180939_1 (AF180939) site-specific
integrase IntI5 [Vibrio mimicus]
Length = 162
Score = 33.6 bits (75), Expect = 1.5
Identities = 22/62 (35%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Query: 152 LSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTE 211
++ T L+ ++ AGI K V LR AT ++ DIR Q QLGH V T+
Sbjct: 99 MNETVLQRTVRRSAQEAGIEKTV-TCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ 157
Query: 212 HY 213
Y
Sbjct: 158 IY 159
>gi|5104468|dbj|BAA79783.1| (AP000060) 362aa long hypothetical
integrase/recombinase xerD [Aeropyrum pernix]
Length = 362
Score = 33.2 bits (74), Expect = 1.9
Identities = 41/175 (23%), Positives = 74/175 (41%), Gaps = 11/175 (6%)
Query: 44 GIRRNKATGRDVYVDDTTYRAVYQ--AADRTLKDAMDLAYL--TGQRVSDVVSMDERQII 99
G+ R + G + ++R V +A R + DA+ ++ L TG RVS+++S+ +
Sbjct: 109 GVMRPFSRGERRFSGSLSWRDVEALLSASRDIIDALIVSMLAETGLRVSELLSLRLSDVD 168
Query: 100 DGALEICQAKTGVKLAIAITGELAVLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLRY 159
G + K I G L+ ++ + L S L D++ +ELS +
Sbjct: 169 LGRGVVRVVGKYGKERIVFLGPLSRMLLEEY-------LASNPLPPDSRIIELSYQAVYK 221
Query: 160 RFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHYV 214
R AG+ + LR AT+ + Q LGH+ + +T+ Y+
Sbjct: 222 RLKSLAKRAGLDPRKVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYL 276
>gi|215226 (M65194) integrase [Mycobacteriophage L5] >gi|2739060
(AF025392) L5-integrase [Cloning vector pUC-GM-INT]
>gi|2739066 (AF025746) integrase [unidentified cloning
vector]
Length = 332
Score = 32.8 bits (73), Expect = 2.5
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 74 KDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVLIKRIFDRK 133
KD +D RV S +I+ G + ++K V + + + +K DR
Sbjct: 176 KDIVDDGMTMKLRVRRGASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMK---DRT 232
Query: 134 RGLKLRSTRLIVDAKGLELSRTGLRYRFDKA--RVAAGIAKEVFQFRDLRAKAATDKADL 191
+ K L+ +G LS++ F K+ R A I + + DLRA AT A
Sbjct: 233 KMNKGPEAFLVTTTQGNRLSKSA----FTKSLKRGYAKIGRPELRIHDLRAVGATFAAQA 288
Query: 192 AGDIRQAQAQLGHASVTMTEHY 213
++ A+LGH + M Y
Sbjct: 289 GATTKELMARLGHTTPRMAMKY 310
>gi|465416|sp|P22884|VINT_BPML5 INTEGRASE >gi|419110|pir||S30978
integrase - Mycobacterium phage L5
>gi|579129|emb|CAA79409| (Z18946) observed 41.8Kd
protein [Mycobacteriophage l5]
Length = 371
Score = 32.8 bits (73), Expect = 2.5
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 74 KDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVLIKRIFDRK 133
KD +D RV S +I+ G + ++K V + + + +K DR
Sbjct: 215 KDIVDDGMTMKLRVRRGASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMK---DRT 271
Query: 134 RGLKLRSTRLIVDAKGLELSRTGLRYRFDKA--RVAAGIAKEVFQFRDLRAKAATDKADL 191
+ K L+ +G LS++ F K+ R A I + + DLRA AT A
Sbjct: 272 KMNKGPEAFLVTTTQGNRLSKSA----FTKSLKRGYAKIGRPELRIHDLRAVGATFAAQA 327
Query: 192 AGDIRQAQAQLGHASVTMTEHY 213
++ A+LGH + M Y
Sbjct: 328 GATTKELMARLGHTTPRMAMKY 349
>gi|6136260|sp|Q38361|VINT_BPMD2 INTEGRASE >gi|420403|pir||S31956
integrase - Mycobacterium phage D29
>gi|15856|emb|CAA49810| (X70352) integrase
[Mycobacteriophage D29] >gi|2358241 (U81553) integrase
[Mycobacteriophage D29]
Length = 333
Score = 32.5 bits (72), Expect = 3.3
Identities = 25/102 (24%), Positives = 42/102 (40%), Gaps = 3/102 (2%)
Query: 113 KLAIAITGELAVLIKR-IFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIA 171
K + + +A +I+ + DR + K L+ +G LS++ K A I
Sbjct: 211 KRPVTVPPHVAAMIREHMADRTKMNKGPEALLVTTTRGQRLSKSAFTRSLKKGY--AKIG 268
Query: 172 KEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
+ + DLRA AT A ++ +LGH + M Y
Sbjct: 269 RPDLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY 310
>gi|138563|sp|P25426|VINT_BPMFR INTEGRASE >gi|93029|pir||S22643
integrase - Mycobacterium phage FRAT1
>gi|15091|emb|CAA45229| (X63702) integrase
[Mycobacterium phage FRAT1]
Length = 333
Score = 32.5 bits (72), Expect = 3.3
Identities = 25/102 (24%), Positives = 42/102 (40%), Gaps = 3/102 (2%)
Query: 113 KLAIAITGELAVLIK-RIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIA 171
K + + +A +I+ + DR + K L+ +G LS++ K A I
Sbjct: 211 KRPVTVPPHVAAMIRAHMADRTKMNKGPEALLVTTTRGQRLSKSAFTRSLKKGY--AKIG 268
Query: 172 KEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
+ + DLRA AT A ++ +LGH + M Y
Sbjct: 269 RPDLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY 310
>gi|3172283 (AF022214) integrase; gp33 [Mycobacteriophage D29]
Length = 356
Score = 32.5 bits (72), Expect = 3.3
Identities = 25/102 (24%), Positives = 42/102 (40%), Gaps = 3/102 (2%)
Query: 113 KLAIAITGELAVLIKR-IFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIA 171
K + + +A +I+ + DR + K L+ +G LS++ K A I
Sbjct: 234 KRPVTVPPHVAAMIREHMADRTKMNKGPEALLVTTTRGQRLSKSAFTRSLKKGY--AKIG 291
Query: 172 KEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
+ + DLRA AT A ++ +LGH + M Y
Sbjct: 292 RPDLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY 333
>gi|2497415|sp|P55632|Y4QK_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4QK
>gi|2182597 (AE000093) Y4qK [Rhizobium sp. NGR234]
Length = 308
Score = 32.1 bits (71), Expect = 4.3
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 146 DAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHA 205
D G ++R + KA + ++K V LR A + D+R Q LGH
Sbjct: 209 DRAGHPITRDAVGQACAKAHDLSRLSKPVTP-HSLRHAFAVHLLEAGADVRTIQLLLGHR 267
Query: 206 SVTMTEHYVR 215
S+ T HY+R
Sbjct: 268 SLATTAHYLR 277
>gi|3128300 (AF010496) integrase/recombinase [Rhodobacter
capsulatus]
Length = 344
Score = 32.1 bits (71), Expect = 4.3
Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 13/209 (6%)
Query: 16 ANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKAT--GRDVYVDDTTYRAVYQAADRTL 73
AN+ + + + AR +G + +P +RR K G + D + + T+
Sbjct: 110 ANKRLKAWRRVMGGARRRGEIE-SDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTV 168
Query: 74 KDA-MDLAYLTGQRVSDVVSMDERQIIDGA-LEICQAKTGVKLAIAITGELAVLIKRIFD 131
+ A +L TG R +D V + I G L Q+KT + + L
Sbjct: 169 QRACFELVCWTGARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAA 228
Query: 132 RKRGLKLRSTRL-----IVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAAT 186
+ +K L ++A G S GL +A AG+ K R R A
Sbjct: 229 ERETVKAALACLSGGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLTAI- 287
Query: 187 DKADLAGDIRQAQAQLGHASVTMTEHYVR 215
A+ G A GH ++ EHY R
Sbjct: 288 --AEAGGSAHAIMAWGGHQTLVEAEHYTR 314
>gi|4377356|gb|AAD19161| (AE001683) Integrase/recombinase [Chlamydia
pneumoniae]
Length = 301
Score = 32.1 bits (71), Expect = 4.3
Identities = 33/138 (23%), Positives = 52/138 (36%), Gaps = 9/138 (6%)
Query: 81 YLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELA-----VLIKRIFDRKRG 135
Y TG RVS++ + + D + + G K + G A + D+ +
Sbjct: 148 YSTGVRVSELCDLRLGHVSDDCIRV--TGKGSKTRLVPLGSRAREAIDAYLCPFRDQYQK 205
Query: 136 LKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDI 195
L + +G +L R+ + R A + + LR AT D D+
Sbjct: 206 KNPHEDHLFLSTRGHKLERSCVWRRIHN--YAKQVTSKPVSPHSLRHAFATHLLDNKADL 263
Query: 196 RQAQAQLGHASVTMTEHY 213
R Q LGHA + TE Y
Sbjct: 264 RVIQEMLGHARIASTEVY 281
>gi|3860920|emb|CAA14820| (AJ235271) INTEGRASE/RECOMBINASE XERD
(xerD) [Rickettsia prowazekii]
Length = 335
Score = 31.7 bits (70), Expect = 5.7
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 27/238 (11%)
Query: 2 NIRQYLDWRTSKVI----ANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGR---D 54
NIR+++++ S + NR++S + + S+ T NP I K +
Sbjct: 74 NIRKWIEYLASNNLHARSINRKISTIKSYYAFLISENHTKF-NPVLNIDLPKYQNKLPII 132
Query: 55 VYVDDTTYRAVYQAADRT-----LKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAK 109
+ +D Y + D T L ++L Y +G RVS++VS+ I+ +
Sbjct: 133 LSIDQIKLILEYCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVR 192
Query: 110 T-------GVKLAIAITGELAVL--IKRIFDRKRGL-KLRSTRLIV----DAKGLELSRT 155
G K + + + AVL IK + R + K +S LI A ++R
Sbjct: 193 KIFSVLGKGNKERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGYMTRQ 252
Query: 156 GLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
+ G+ E LR A+ + D+R Q LGHA ++ T+ Y
Sbjct: 253 NFAILLKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIY 310
>gi|2731706|gb|AAC38070.1| (AF000001) Rci [Salmonella typhi]
Length = 420
Score = 31.3 bits (69), Expect = 7.4
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 25/219 (11%)
Query: 10 RTSKVIANR----EVSVFSHLWNWARSKGITDLPNPCGGIRRNKAT-GRDVYVDDTTYRA 64
RT + I+ E+++ S L+N A + T NP +R+ K + GRD + R
Sbjct: 72 RTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEERR 131
Query: 65 V---YQAADRTLKDAMDLAYLTGQRVSDVVSM--DERQIIDGALEICQAKTGVKLAIAIT 119
+ +Q + L LA T R +++S+ + + G + K G + ++
Sbjct: 132 LSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVPLS 191
Query: 120 GELAVLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRD 179
RK L+ + + S +G + + A I F D
Sbjct: 192 ------------RKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVD--LHFHD 237
Query: 180 LRAKAATDKADLAG-DIRQAQAQLGHASVTMTEHYVRKR 217
LR +A + +L ++ + A GH S+ M + Y R
Sbjct: 238 LRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLR 276
>gi|6330957|dbj|BAA86576.1| (AB033088) KIAA1262 protein [Homo
sapiens]
Length = 1362
Score = 31.3 bits (69), Expect = 7.4
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 45 IRRNKATGRDVYVDDTTYRAVYQAADRTLKDAMDLAYLTGQRVSDVVSMDE 95
+R +AT ++Y Y V+QAA+ L+DA ++ L G + DV S +E
Sbjct: 763 LRTRQATLTEIYSQCQRYYQVFQAANDWLEDAQEMLQLAGNGL-DVESAEE 812
>gi|2621988 (AE000865) integrase-recombinase protein
[Methanobacterium thermoautotrophicum]
Length = 311
Score = 30.9 bits (68), Expect = 9.7
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 54 DVYVDDTTYRAVYQAADRTLKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVK 113
+V D + R + DR + + L Y +G RVS++VS+ I I G K
Sbjct: 140 EVADDGSVIRRFIKTRDRLI---LSLLYSSGLRVSELVSLRINDIDPDERTIRIRGKGDK 196
Query: 114 LAIAITGE------LAVLIKRIFDRKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVA 167
I + E + L +RI + S L ++ G L+ ++
Sbjct: 197 DRIVLFDENTRDLLMDYLKRRIHE--------SEYLFLNRFGDPLTPRYVQMMIKNYARK 248
Query: 168 AGIAKEVFQFRDLRAKAATDKADLAGDIRQAQAQLGHASVTMTEHY 213
AGI K+V LR AT DIR Q LGH++++ T+ Y
Sbjct: 249 AGIKKKVTP-HILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIY 293
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.322 0.135 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51796122
Number of Sequences: 449381
Number of extensions: 1849385
Number of successful extensions: 8102
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 8065
Number of HSP's gapped (non-prelim): 59
length of query: 226
length of database: 138,416,789
effective HSP length: 55
effective length of query: 171
effective length of database: 113,700,834
effective search space: 19442842614
effective search space used: 19442842614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 68 (30.9 bits)