BLASTP 2.0.10 [Aug-26-1999]
Query= XF-03D03-GL04
(495 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|2177098 (U67894) UDP-MurNAc-Dipeptide: meso-diaminopimelate ... 326 2e-88
gi|541194|pir||S40595 UDP-N-acetylmuramoylalanyl-D-glutamate--2... 324 1e-87
gi|127538|sp|P22188|MURE_ECOLI UDP-N-ACETYLMURAMOYLALANYL-D-GLU... 324 1e-87
gi|1171073|sp|P45060|MURE_HAEIN UDP-N-ACETYLMURAMOYLALANYL-D-GL... 309 3e-83
gi|6525303|gb|AAD29718.2|AF141867_1 (AF141867) probable UDP-N-a... 303 2e-81
gi|417328|sp|Q03523|MURE_BACSU UDP-N-ACETYLMURAMOYLALANYL-D-GLU... 289 3e-77
gi|5689961|emb|CAB51998.1| (AL109663) putative UDP-N-acetylmura... 279 4e-74
gi|2984050 (AE000754) UDP-MurNac-tripeptide synthetase [Aquifex... 262 4e-69
gi|3122401|sp|O06219|MURE_MYCTU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 260 2e-68
gi|3122415|sp|Q55469|MURE_SYNY3 UDP-N-ACETYLMURAMOYLALANYL-D-GL... 255 5e-67
gi|5834375|gb|AAD53941.1|AF179611_25 (AF179611) UDP-N-acetylmur... 252 6e-66
gi|6093448|sp|O69557|MURE_MYCLE UDP-N-ACETYLMURAMOYLALANYL-D-GL... 249 4e-65
gi|2498598|sp|Q59650|MURE_PSEAE UDP-N-ACETYLMURAMOYLALANYL-D-GL... 242 7e-63
gi|4376699|gb|AAD18562| (AE001625) N-Acetylmuramoylalanylglutam... 236 2e-61
gi|3328681|gb|AAC67862.1| (AE001299) UDP-N-acetylmuramoylalanyl... 233 2e-60
gi|6457968|gb|AAF09877.1|AE001890_9 (AE001890) UDP-N-acetylmura... 226 3e-58
gi|4980735|gb|AAD35328.1|AE001707_15 (AE001707) UDP-N-acetylmur... 222 5e-57
gi|6093449|sp|O05954|MURE_RICPR UDP-N-ACETYLMURAMOYLALANYL-D-GL... 221 1e-56
gi|6456164|gb|AAF09152.1|AC011622_9 (AC011622) putative UDP-N-a... 203 3e-51
gi|3256223|emb|CAA74740| (Y14370) UDP-N-acetylmuramyl-tripeptid... 199 3e-50
gi|6093450|sp|O83903|MURE_TREPA UDP-N-ACETYLMURAMOYLALANYL-D-GL... 195 6e-49
gi|4156007 (AE001561) UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE... 178 7e-44
gi|2314673|gb|AAD08535.1| (AE000648) UDP-MurNac-tripeptide synt... 175 8e-43
gi|3914073|sp|O51219|MURE_BORBU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 155 1e-36
gi|6093446|sp|O85298|MURE_BUCAP UDP-N-ACETYLMURAMOYLALANYL-D-GL... 128 1e-28
gi|6093447|sp|O69290|MURE_CAMJE UDP-N-ACETYLMURAMOYLALANYL-D-GL... 111 2e-23
gi|5689960|emb|CAB51997.1| (AL109663) putative UDP-N-acetylmura... 84 2e-15
gi|5689958|emb|CAB51995.1| (AL109663) putative UDP-N-acetylmura... 76 6e-13
gi|2621604 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase... 75 1e-12
gi|3122417|sp|O33804|MURF_STRTO PROBABLE UDP-N-ACETYLMURAMOYLAL... 68 1e-10
gi|6225735|sp|Q9ZDC2|MURD_RICPR UDP-N-ACETYLMURAMOYLALANINE--D-... 67 4e-10
gi|6460318|gb|AAF12038.1|AE002079_3 (AE002079) UDP-N-acetylmura... 66 7e-10
gi|2621606 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase... 66 9e-10
gi|2507071|sp|P11880|MURF_ECOLI UDP-N-ACETYLMURAMOYLALANYL-D-GL... 62 8e-09
gi|3122403|sp|O06222|MURD_MYCTU UDP-N-ACETYLMURAMOYLALANINE--D-... 62 8e-09
gi|96537|pir||S10691 UDP-N-acetylmuramyl-tripeptide synthetase ... 61 2e-08
gi|2177096 (U67893) UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding En... 61 2e-08
gi|78921|pir||S04846 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6... 60 4e-08
gi|3122410|sp|P73668|MURD_SYNY3 UDP-N-ACETYLMURAMOYLALANINE--D-... 59 7e-08
gi|3122402|sp|O06220|MURF_MYCTU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 59 9e-08
gi|3393028|emb|CAA06440| (AJ005201) cyanophycin synthetase [Ana... 59 9e-08
gi|5834372|gb|AAD53938.1|AF179611_22 (AF179611) UDP-N-acetylmur... 58 2e-07
gi|6093445|sp|O83873|MURD_TREPA UDP-N-ACETYLMURAMOYLALANINE--D-... 57 3e-07
gi|3080475|emb|CAA18670.1| (AL022602) udp-n-acetylmuramoylalani... 57 5e-07
gi|6225734|sp|Q9ZDS8|MURC_RICPR UDP-N-ACETYLMURAMATE--ALANINE L... 55 1e-06
gi|3090871 (AF035938) uridine diphosphate N-acetylmuramoyl-L-al... 54 3e-06
gi|5834369|gb|AAD53935.1|AF179611_19 (AF179611) UDP-N-acetylmur... 54 3e-06
gi|417327|sp|Q03522|MURD_BACSU UDP-N-ACETYLMURAMOYLALANINE--D-G... 53 5e-06
gi|1171072|sp|P45063|MURD_HAEIN UDP-N-ACETYLMURAMOYLALANINE--D-... 53 5e-06
gi|1652973|dbj|BAA17890| (D90910) hypothetical protein [Synecho... 53 5e-06
gi|2983375 (AE000709) UDP-MURNAC-pentapeptide sythetase [Aquife... 52 9e-06
gi|39993|emb|CAA45555| (X64258) UDP-N-acetylmuramoylalanine--D-... 52 1e-05
gi|3024202|sp|P96613|MURF_BACSU UDP-N-ACETYLMURAMOYLALANYL-D-GL... 52 1e-05
gi|3122408|sp|O31211|MURC_STAAU UDP-N-ACETYLMURAMATE--ALANINE L... 52 2e-05
gi|2983764 (AE000736) UDP-N-acetylmuramate-alanine ligase [Aqui... 52 2e-05
gi|4009480 (AF068902) D-glutamic acid adding enzyme MurD [Strep... 50 4e-05
gi|3122404|sp|O06225|MURC_MYCTU UDP-N-ACETYLMURAMATE--ALANINE L... 50 4e-05
gi|3080477|emb|CAA18672.1| (AL022602) udp-n-acetylmuramoylalany... 50 6e-05
gi|4377221|gb|AAD19039| (AE001670) Muramoylalanine-Glutamate Li... 49 8e-05
gi|1171075|sp|P45450|MURF_SYNY3 UDP-N-ACETYLMURAMOYLALANYL-D-GL... 48 1e-04
gi|4980734|gb|AAD35327.1|AE001707_14 (AE001707) UDP-N-acetylmur... 48 1e-04
gi|1653256|dbj|BAA18171| (D90912) UDP-N-acetylmuramoylalanyl-D-... 47 4e-04
gi|6093451|sp|O83401|MURF_TREPA UDP-N-ACETYLMURAMOYLALANYL-D-GL... 46 5e-04
gi|3122405|sp|O07108|MURD_ENTFA UDP-N-ACETYLMURAMOYLALANINE--D-... 46 5e-04
gi|5834374|gb|AAD53940.1|AF179611_24 (AF179611) UDP-N-acetylmur... 46 7e-04
gi|127537|sp|P14900|MURD_ECOLI UDP-N-ACETYLMURAMOYLALANINE--D-G... 46 9e-04
gi|4377219|gb|AAD19037| (AE001670) Muramoyl-DAP Ligase [Chlamyd... 46 9e-04
gi|42046|emb|CAA35611| (X17609) UDP-N-acetylmuramoyl-L-alanine:... 45 0.002
gi|3329220|gb|AAC68353.1| (AE001348) UDP-N-acetylmuramoylalanin... 44 0.003
gi|6458474|gb|AAF10342.1|AE001931_13 (AE001931) UDP-N-acetylmur... 44 0.003
gi|4980729|gb|AAD35322.1|AE001707_9 (AE001707) UDP-N-acetylmura... 43 0.004
gi|2981818|pdb|1UAG| Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamat... 43 0.004
gi|6458326|gb|AAF10205.1|AE001920_8 (AE001920) UDP-N-acetylmura... 43 0.004
gi|2149895 (U94706) D-glutamic acid adding enzyme [Staphylococc... 43 0.008
gi|3122409|sp|O33595|MURD_STAAU UDP-N-ACETYLMURAMOYLALANINE--D-... 43 0.008
gi|2463563|dbj|BAA22556| (AB007500) MURD [Staphylococcus aureus] 43 0.008
gi|556014 (L31845) UDP-N-acetyl muramate-alanine ligase [Bacill... 41 0.022
gi|3183540|sp|P40778|MURC_BACSU UDP-N-ACETYLMURAMATE--ALANINE L... 41 0.022
gi|4406514|gb|AAD20011| (AF123319) UDP-N-acetylmuramoylalanyl-D... 41 0.029
gi|3868935|dbj|BAA34293| (AB015023) MurC [Corynebacterium gluta... 39 0.066
gi|3329218|gb|AAC68351.1| (AE001348) UDP-N-acetylmuramoylalanyl... 38 0.15
gi|3123061|sp|O26631|Y531_METTH HYPOTHETICAL PROTEIN MTH531 >gi... 38 0.19
gi|3914074|sp|O51532|MURD_BORBU UDP-N-ACETYLMURAMOYLALANINE--D-... 38 0.19
gi|6723459|emb|CAB66325.1| (AJ242646) MurC protein [Brevibacter... 38 0.25
gi|2960136|emb|CAA18034.1| (AL022121) hypothetical protein Rv37... 38 0.25
gi|4154982 (AE001479) UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE ... 37 0.33
gi|2984290 (AE000771) UDP-N-acetylmuramoylalanine-D-glutamate l... 37 0.44
gi|2313605|gb|AAD07560.1| (AE000564) UDP-N-acetylmuramoylalanin... 36 0.57
gi|3150111|emb|CAA19164.1| (AL023596) hypothetical protein MLCB... 34 3.8
gi|3219995|sp|P37773|MPL_ECOLI UDP-N-ACETYLMURAMATE:L-ALANYL-GA... 33 6.5
>gi|2177098 (U67894) UDP-MurNAc-Dipeptide: meso-diaminopimelate
ligase [Escherichia coli]
Length = 495
Score = 326 bits (827), Expect = 2e-88
Identities = 206/494 (41%), Positives = 259/494 (51%), Gaps = 22/494 (4%)
Query: 10 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 69
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 70 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQ 120
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T Q
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 125
Query: 121 LLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVS 180
LLAQ LG SA GT+G GL +V+PT TT + + LA L D+GA AMEVS
Sbjct: 126 LLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVS 185
Query: 181 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPF 240
SH L Q RV + + VFTNL+RDHLDYHGDMEHY AAK L++ A+IN DD
Sbjct: 186 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEV 245
Query: 241 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHL---SLNLQGIGFDLVIGAD--HASVRSP 295
G R LAK V VS+ H + + + L +N G + + + S
Sbjct: 246 GRR---WLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESH 302
Query: 296 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHT 355
LMG FNV NLL L AL Y L+++ + L+P+ GRM ++ G+P DYAHT
Sbjct: 303 LMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-KVFTAPGKPTVVVDYAHT 361
Query: 356 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 415
PDAL + L + H G+L CVFGCGG+RD+GKR M IAE ADV VTDDNPR E+
Sbjct: 362 PDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEP 421
Query: 416 DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPF 475
I+ DILAG KV R DVVL+AGKGHE YQ V R +
Sbjct: 422 RAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY 481
Query: 476 DDTEVARRVLAAMS 489
D R+L +S
Sbjct: 482 SDRVTVARLLGVIS 495
>gi|541194|pir||S40595
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) murE -
Escherichia coli
Length = 495
Score = 324 bits (822), Expect = 1e-87
Identities = 205/494 (41%), Positives = 258/494 (51%), Gaps = 22/494 (4%)
Query: 10 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 69
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 70 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQ 120
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T Q
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 125
Query: 121 LLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVS 180
LLAQ LG SA GT+G GL +V+PT TT + + LA L D+GA AMEVS
Sbjct: 126 LLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVS 185
Query: 181 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPF 240
SH L Q RV + + VFTNL+RDHLDYHGDMEHY AAK L++ A+IN DD
Sbjct: 186 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEV 245
Query: 241 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHL---SLNLQGIGFDLVIGAD--HASVRSP 295
G R LAK V VS+ H + + + L +N G + + + S
Sbjct: 246 GRR---WLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESH 302
Query: 296 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHT 355
LMG FNV NLL L AL Y L+++ + L+P+ GRM + G+P DYAHT
Sbjct: 303 LMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-EVFTAPGKPTVVVDYAHT 361
Query: 356 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 415
PDAL + L + H G+L CVFGCGG+RD+GKR M IAE ADV VTDDNPR E+
Sbjct: 362 PDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEP 421
Query: 416 DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPF 475
I+ DILAG KV R DVVL+AGKGHE YQ V R +
Sbjct: 422 RAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY 481
Query: 476 DDTEVARRVLAAMS 489
D R+L ++
Sbjct: 482 SDRVTVARLLGVIA 495
>gi|127538|sp|P22188|MURE_ECOLI
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|96533|pir||S14384
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) - Escherichia
coli >gi|285768|dbj|BAA01350| (D10483)
UDP-MurNac-tripeptide synthetase (MurE) [Escherichia
coli] >gi|581032|emb|CAA38862.1| (X55034)
UDP-MurNac-tripeptide synthetase (MurE) [Escherichia
coli] >gi|1786273 (AE000118) meso-diaminopimelate-adding
enzyme [Escherichia coli]
Length = 495
Score = 324 bits (822), Expect = 1e-87
Identities = 205/494 (41%), Positives = 258/494 (51%), Gaps = 22/494 (4%)
Query: 10 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 69
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 70 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQ 120
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T Q
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 125
Query: 121 LLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVS 180
LLAQ LG SA GT+G GL +V+PT TT + + LA L D+GA AMEVS
Sbjct: 126 LLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVS 185
Query: 181 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPF 240
SH L Q RV + + VFTNL+RDHLDYHGDMEHY AAK L++ A+IN DD
Sbjct: 186 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEV 245
Query: 241 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHL---SLNLQGIGFDLVIGAD--HASVRSP 295
G R LAK V VS+ H + + + L +N G + + + S
Sbjct: 246 GRR---WLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESH 302
Query: 296 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHT 355
LMG FNV NLL L AL Y L+++ + L+P+ GRM + G+P DYAHT
Sbjct: 303 LMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-EVFTAPGKPTVVVDYAHT 361
Query: 356 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 415
PDAL + L + H G+L CVFGCGG+RD+GKR M IAE ADV VTDDNPR E+
Sbjct: 362 PDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEP 421
Query: 416 DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPF 475
I+ DILAG KV R DVVL+AGKGHE YQ V R +
Sbjct: 422 RAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY 481
Query: 476 DDTEVARRVLAAMS 489
D R+L ++
Sbjct: 482 SDRVTVARLLGVIA 495
>gi|1171073|sp|P45060|MURE_HAEIN
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|1075415|pir||H64184 UDP-MurNac-tripeptide synthetase
(murE) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574688 (U32793) UDP-N-acetylmuramyl-tripeptide
synthetase (murE) [Haemophilus influenzae Rd]
Length = 488
Score = 309 bits (784), Expect = 3e-83
Identities = 187/480 (38%), Positives = 251/480 (51%), Gaps = 16/480 (3%)
Query: 13 DIPQAR-DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ 71
++P+ + D+ + +V+DSR+V+ GD G FI+ A GA A++ E
Sbjct: 9 NLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSS 68
Query: 72 GV-------SVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQ 124
+VP + + L L ++AD F+ PS +T+VGVTGTNGKT+ QLLAQ
Sbjct: 69 EHLTVAFIGNVP--VVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQLLAQ 126
Query: 125 AWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHAL 184
LG R+A GT+G GL+ Q+V TT +++ L+ + GA ++EVSSH L
Sbjct: 127 WAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFTSIEVSSHGL 186
Query: 185 DQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRL 244
Q RV+ +H+ +FTNLTRDHLDYH ME+Y AAK RLF D Q VIN DD G +
Sbjct: 187 AQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVINADDEIGYQW 246
Query: 245 LHGLAKGM---RRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFN 301
L L + V H + H I F+ G + + SPL+G FN
Sbjct: 247 LTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG--NGVLHSPLIGAFN 304
Query: 302 VDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQ 361
V NLL V L + Y L + A +L+ + GRM + +P DYAHTPDAL +
Sbjct: 305 VSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMI-QYPNKPTVIVDYAHTPDALEK 363
Query: 362 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVAD 421
L + H G L C+FGCGG+RDRGKR MA +AE A+ + VT DNPR E I D
Sbjct: 364 ALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQIETD 423
Query: 422 ILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVA 481
I+AGF V + DR DV+LIAGKGHE YQ + F D E+A
Sbjct: 424 IVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGSEVVHFSDQEIA 483
>gi|6525303|gb|AAD29718.2|AF141867_1 (AF141867) probable
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Vibrio cholerae]
Length = 495
Score = 303 bits (768), Expect = 2e-81
Identities = 188/483 (38%), Positives = 258/483 (52%), Gaps = 23/483 (4%)
Query: 15 PQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ--- 71
P+ +VI+ L +DSR ++ GD G FI+ A A+GA +L E A
Sbjct: 20 PKLAALVITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNG 79
Query: 72 ------GVSVPDGAIAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQ 124
GV V I + L L +A R +G H +Q ++GVTGTNGKT+ QL+AQ
Sbjct: 80 WVEYRAGVPV----IYLAELGQHLSELAGRLYGGHHNQ---LIGVTGTNGKTTITQLIAQ 132
Query: 125 AWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHAL 184
LG ++A GT G G + + P TT LQ+ L L + GAQ A+E SSH L
Sbjct: 133 WLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGL 192
Query: 185 DQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRL 244
QGRV +H+ VF+NL+RDHLDYHG ME Y AAK LF+ Q A+INVDD G +
Sbjct: 193 VQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQW 252
Query: 245 LHGLAKGMRRVGVSVC--GHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNV 302
+ L + +GVS+ +T + A+ ++ GI + + +PL+G FN
Sbjct: 253 VKQLPQA---IGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNA 309
Query: 303 DNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQV 362
NLL L +L + S + A LRP+ GRM L ++ + DYAHTPDAL +
Sbjct: 310 CNLLLALATLLSLGFEKSALLATAPKLRPVLGRM-ELFQREQKAKMVVDYAHTPDALEKA 368
Query: 363 LSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADI 422
L +L H G+L + GCGG+RDRGKR MA IAE AD V +TDDNPR E IVAD+
Sbjct: 369 LRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADM 428
Query: 423 LAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVAR 482
+AG P ++ R +D++L+AGKGHE YQ +A + D E A+
Sbjct: 429 VAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQ 488
Query: 483 RVL 485
++L
Sbjct: 489 QLL 491
>gi|417328|sp|Q03523|MURE_BACSU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|477729|pir||B47691
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) - Bacillus
subtilis >gi|40162|emb|CAA78767| (Z15056) murE [Bacillus
subtilis] >gi|2633889|emb|CAB13391| (Z99111)
UDP-N-acetylmuramoylananine-D-glutamate-2,6-
diaminopimelate ligase [Bacillus subtilis]
Length = 494
Score = 289 bits (733), Expect = 3e-77
Identities = 178/489 (36%), Positives = 246/489 (49%), Gaps = 17/489 (3%)
Query: 12 PDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ 71
P + ++D I+ + MDSREV+ G G F + A GA AI+ E
Sbjct: 14 PSVNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV 73
Query: 72 GVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGV 131
V V I LRA L ++D F+G P++ + ++G+TGTNGKTST ++ + G
Sbjct: 74 NVPV---IIVRQSLRA-LSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGK 129
Query: 132 RSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDG 191
R+ GT+ + + D+ +P TTP + L + ++ D+ MEVSSHAL GRV G
Sbjct: 130 RTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRVHG 189
Query: 192 VHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA-------HQDVQAAVINVDDPFGLRL 244
YD+ VFTNLT+DHLDYH M+ Y AK+ LF+ H+ + AV+N DD
Sbjct: 190 CDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYF 249
Query: 245 LHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDN 304
A + G+ DADVMA+++S+ QG FDLV + L+G+FNV N
Sbjct: 250 EKVTAAHISTYGIK----NDADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNVYN 305
Query: 305 LLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLS 364
+LA A I + L + GR + Q P DYAHTPD+L VL
Sbjct: 306 VLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFP-VIVDYAHTPDSLENVLE 364
Query: 365 SLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILA 424
+ G+L V GCGG+RD+ KR +MA IA AD T DNPR ED I+ D+ A
Sbjct: 365 TCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEA 424
Query: 425 GFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRV 484
G + +R DVVLIAGKGHE YQ++ FDD EVA R
Sbjct: 425 GVENAYYHSI-ANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGNETFDFDDAEVAARA 483
Query: 485 LAAMSAQET 493
+ ++ +T
Sbjct: 484 IVELNKNKT 492
>gi|5689961|emb|CAB51998.1| (AL109663) putative
UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase [Streptomyces coelicolor A3(2)]
Length = 506
Score = 279 bits (706), Expect = 4e-74
Identities = 183/496 (36%), Positives = 255/496 (50%), Gaps = 26/496 (5%)
Query: 6 PLAQLLPDIPQAR---DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 62
PLA+L + A I+G+ DSR V+PGD HG F+ A GA A
Sbjct: 16 PLAELADQLGVAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 75
Query: 63 ILFEPP-APQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121
+L +P A + + A+ V RAR+G +A +GHP + + +G+TGT+GKT+T L
Sbjct: 76 VLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYL 135
Query: 122 LAQAWHCLGVRSATC----GTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAM 177
+ G+R+A GT+ + + D+ + + TTP L A +R+ G +AVAM
Sbjct: 136 VEG-----GLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAM 190
Query: 178 EVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVD 237
EVSSHAL GRVD +D+ VFTNL+ +H+++H ME Y AKA+LF + + V+NVD
Sbjct: 191 EVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRSRLGVVNVD 250
Query: 238 DPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIG--ADHASVRSP 295
D +G RL + V S GH DAD A + + F V+G + + +SP
Sbjct: 251 DEYGRRLAKEATVPV--VTYSAEGHPDADWRADEVEVGPLDSTF-TVLGPKGERIAAKSP 307
Query: 296 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQP-XXXXDYAH 354
L G FNV N LA L A A ++ + + GR+ R+ +GQP DYAH
Sbjct: 308 LAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV--DEGQPFFAVVDYAH 365
Query: 355 TPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGED 414
DA+ VL +L G+L V GCGG+RD KR M AD +T DNPR ED
Sbjct: 366 KTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSED 425
Query: 415 GDGIVADILAGFA-----RPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVA 469
I+A +L G A V+V DR D VL+AGKGHE+ Q++A
Sbjct: 426 PLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA 485
Query: 470 GVRHPFDDTEVARRVL 485
GV PFDD +V R +
Sbjct: 486 GVVRPFDDRQVLREAI 501
>gi|2984050 (AE000754) UDP-MurNac-tripeptide synthetase [Aquifex
aeolicus]
Length = 482
Score = 262 bits (663), Expect = 4e-69
Identities = 164/469 (34%), Positives = 241/469 (50%), Gaps = 23/469 (4%)
Query: 22 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAIA 81
+ G+ ++S+EV+ G G FI +A RGA A++ E P V V I
Sbjct: 23 VKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVSSKVPV----II 78
Query: 82 VHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGV 141
V R LG A F G PS+ + ++G+TGTNGKT+T L+ + G ++ GT+
Sbjct: 79 VEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTGLIGTIYY 138
Query: 142 GLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTN 201
L ++++ +G TTP + H+ L + + GA+ V E+SSHALDQ RV ++ V+FTN
Sbjct: 139 RLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRFEAVLFTN 198
Query: 202 LTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLL---HGLAKGMRRVGVS 258
L++DHLDYH ME Y A+KA+LF + + +IN DD +G RLL HG + G
Sbjct: 199 LSQDHLDYHKTMEDYFASKAKLFTEYESKVKIINADDTYGKRLLKITHGEIITYGKKG-- 256
Query: 259 VCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYA 318
D+ + + +G + + L+G F NL A + YAL
Sbjct: 257 -------DLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNL--SAAIAYALWKG 307
Query: 319 LSE--IAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLIC 376
+ I L + + GR + + DYAHTPDA+ VL + G+LI
Sbjct: 308 IEPDLIQRALKCVN-VPGRFEVV--HSDKFTVIIDYAHTPDAVENVLRTARKLSKGKLIS 364
Query: 377 VFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKVQR 436
VFG GG RDR KR M AE +D++ +T DNPR E+ + I+ DIL G + + V ++
Sbjct: 365 VFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEKDKVIIEA 424
Query: 437 DRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVL 485
DR D+V I GKGHE YQE+ GV++PF D +V + +L
Sbjct: 425 DRRKAIKKAIDMAKEGDMVAILGKGHEDYQEIKGVKYPFSDAQVVKEIL 473
>gi|3122401|sp|O06219|MURE_MYCTU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2104320|emb|CAB08669| (Z95388) murE [Mycobacterium
tuberculosis]
Length = 535
Score = 260 bits (657), Expect = 2e-68
Identities = 179/482 (37%), Positives = 240/482 (49%), Gaps = 21/482 (4%)
Query: 19 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78
D ++G+ + +++V PGD HG + DA ARGAVA+L +P GV+ G
Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA---GVAEIAG 115
Query: 79 AIAVHGL-----RARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRS 133
AV L R LG +A +GHPS+ +T++G+TGT+GKT+T L+ G +
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175
Query: 134 ATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVH 193
GT+G+ + +P+ TTP L LA + + G V MEVSSHAL GRVDG
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTR 235
Query: 194 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQD---VQAAVINVDDPFGLRLLHGLAK 250
+ V FTNL+RDHLD+H M Y AKA LF + AV+ +DD G + A
Sbjct: 236 FAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAAD 295
Query: 251 GMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAG 310
+ H A +A + Q D H +R P GR+NV N L
Sbjct: 296 AITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLP--GRYNVANCLVALA 353
Query: 311 VLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHV 370
+L + + + L +R + GR+ ++ G DYAH P+AL VL++L +H
Sbjct: 354 ILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGF-LALVDYAHKPEALRSVLTTL-AHP 410
Query: 371 CGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFAR-- 428
RL VFG GG+RD GKR+ M IA AD+V VTDDNPR ED I +ILAG A
Sbjct: 411 DRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVG 470
Query: 429 --PNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLA 486
VV++ DR DVVLIAGKGHE Q G PFDD L
Sbjct: 471 GDAQVVEI-ADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALE 529
Query: 487 AM 488
A+
Sbjct: 530 AL 531
>gi|3122415|sp|Q55469|MURE_SYNY3
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|1001328|dbj|BAA10815| (D64006) UDP-MurNac-tripeptide
synthetase [Synechocystis sp.]
Length = 505
Score = 255 bits (645), Expect = 5e-67
Identities = 179/471 (38%), Positives = 232/471 (49%), Gaps = 10/471 (2%)
Query: 21 VISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDG-- 78
+++GL +S PG G F A GA+A + A Q +G
Sbjct: 34 IVTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEKALQKFPPQNGEC 93
Query: 79 AIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGT 138
IAV L +A F+ HP+Q + +VGVTGTNGKT+T L+ + SA GT
Sbjct: 94 VIAVPDLVPVCAGLAAAFYQHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGT 153
Query: 139 LGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVV 198
L TTP L + LA+ G Q MEVSSHAL QGRV + V
Sbjct: 154 LYTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAV 213
Query: 199 FTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRRVGV 257
FTNLT+DHLD+HG ME+Y AAKA LF +Q AVIN DDP+G RL+ L + +V
Sbjct: 214 FTNLTQDHLDFHGTMENYFAAKALLFKESYLQGRAVINQDDPYGQRLIDRLP--LDQVYT 271
Query: 258 SVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNY 317
+ AD + L G+ V SPL+G+FN+ N+LA + L+
Sbjct: 272 YSVNDSTADFYTKDLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAA--IASGLHL 329
Query: 318 ALSEIAAVLSTLR--PIHGRMNRLGGQDGQPXXXX-DYAHTPDALGQVLSSLSSHVCGRL 374
L A V L + GRM ++ + Q DYAHTPD+L L + + GRL
Sbjct: 330 GLDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRL 389
Query: 375 ICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKV 434
IC+FGCGG+RDR KR M IA AD+ VT DNPR ED + I+AD++ G + +
Sbjct: 390 ICIFGCGGDRDRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGISLDIEPWI 449
Query: 435 QRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVL 485
DR D VLIAGKGHE YQ + + FDD E AR L
Sbjct: 450 IGDRATAIHKAIREAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREAL 500
>gi|5834375|gb|AAD53941.1|AF179611_25 (AF179611)
UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-
diaminopimelate ligase [Zymomonas mobilis]
Length = 485
Score = 252 bits (636), Expect = 6e-66
Identities = 173/485 (35%), Positives = 234/485 (47%), Gaps = 33/485 (6%)
Query: 15 PQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS 74
P+ +D + G +DSR+V G +G FIE A A GAVAI+ P
Sbjct: 19 PKEKDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKI--- 75
Query: 75 VPDGAIAVHGLRARLG--AMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVR 132
+GA+ + RL MA RF+ M VTGTNGKTS +L Q W G +
Sbjct: 76 --EGAVHLVAENPRLAFAEMAARFYA--PFPPVMAAVTGTNGKTSVAELCRQLWTITGHK 131
Query: 133 SATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGV 192
+A+ GTLGV G TTP V+ C + L V E SSH LDQ R DG
Sbjct: 132 AASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGA 191
Query: 193 HYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQ--AAVINVDDPFGLRLL-HGLA 249
FT+ +RDHLDYHG ME Y AAK RLF + AVI DDP ++ H
Sbjct: 192 KVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQK 251
Query: 250 KGMRRVGVSVCG-----HTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDN 304
+G++ + + + +AD Q ++L+++G + +R PL+G + + N
Sbjct: 252 RGLKLIDIWKAEAIRLVNREADSQGQMITLSIKGESY---------KIRLPLIGGYQLSN 302
Query: 305 LLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLS 364
L AG++ A + + A L+ L+P+ GR+ R DYAHTPD L +
Sbjct: 303 GLVRAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIE 362
Query: 365 SLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILA 424
+L H G L VFG GG+RD+GKR +M IA + AD V VTDDNPRGED I ++L
Sbjct: 363 ALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEVLV 422
Query: 425 GFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRH----PFDDTEV 480
G + R D+VLIAGKGHE+ Q + PFDD V
Sbjct: 423 GAPLAEEI---GGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLPFDDVTV 479
Query: 481 ARRVL 485
A+ +
Sbjct: 480 AKEAV 484
>gi|6093448|sp|O69557|MURE_MYCLE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|3080478|emb|CAA18673.1| (AL022602)
udp-n-acetylmuramoylalanyl-d-glutamate
--2,6-diaminopimelate ligase [Mycobacterium leprae]
Length = 530
Score = 249 bits (629), Expect = 4e-65
Identities = 186/504 (36%), Positives = 246/504 (47%), Gaps = 42/504 (8%)
Query: 8 AQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEP 67
A +PDIP ++G+ + ++EV GD HG + A RGAVA+L +
Sbjct: 39 AATVPDIP------VTGVTLRAQEVLSGDLFAALAGASTHGARYAGVALERGAVAVLTDV 92
Query: 68 PA-----PQGVSVPDGAIAVHGL-RARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121
Q SVP I +H R+ LG +A +GHPS MT+VG+TGT+GKT+T +
Sbjct: 93 AGVAELTAQASSVP---ILIHPEPRSVLGGLAAAAYGHPSNRMTVVGITGTSGKTTTTYM 149
Query: 122 LAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 181
+ G GT+G+ + +P+ TTP L LA + + G + V MEVSS
Sbjct: 150 VEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVERGVETVVMEVSS 209
Query: 182 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDV---QAAVINVDD 238
HAL GRV+G + V FTNL+RDHLD+H DME Y AKA LF + + V+ +DD
Sbjct: 210 HALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSLLRARTVVVCIDD 269
Query: 239 PFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRS---- 294
G A+ + VS G + + G+G D A V+
Sbjct: 270 DAGRAT---AARAGDAITVSALGQ---PASWRATDIRSPGVGAQEFTAVDPAGVQHRVGI 323
Query: 295 PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG-GQDGQPXXXXDYA 353
L GR+NV N L +L + + + + +R I GR+ R+ GQD DYA
Sbjct: 324 RLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIR-IPGRLERIDCGQDF--LALVDYA 380
Query: 354 HTPDALGQVLSSL--SSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPR 411
H P AL VL++L H RL VFG GGERD GKR+ M IA AD+V VTDDNPR
Sbjct: 381 HKPGALHSVLTALLQPDH---RLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTDDNPR 437
Query: 412 GEDGDGIVADILAGF----ARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQE 467
GED I DIL G VV++ DR +DVVL+AGKGHE Q
Sbjct: 438 GEDPAAIRRDILTGTVAAGGAAQVVEI-GDRRAAIQYAVAWAGPDDVVLVAGKGHETGQR 496
Query: 468 VAGVRHPFDDTEVARRVLAAMSAQ 491
A PFDD R L A+
Sbjct: 497 GAAETCPFDDRVELARALQVRDAR 520
>gi|2498598|sp|Q59650|MURE_PSEAE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|1084033|pir||S54873
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) - Pseudomonas
aeruginosa (fragment) >gi|840843|emb|CAA58873| (X84053)
UDP-N-acetylmuramoylalanyl-D-glutamate--
2,6-diaminopimelate ligase [Pseudomonas aeruginosa]
Length = 325
Score = 242 bits (610), Expect = 7e-63
Identities = 146/327 (44%), Positives = 186/327 (56%), Gaps = 5/327 (1%)
Query: 5 MPLAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAIL 64
M L+QL P RD++I L +DS V+P D G I DA +GA A+
Sbjct: 3 MSLSQLFPQAE--RDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVA 60
Query: 65 FEPPAPQGVSVPDGA-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLA 123
+E + D IAV GL A+L A+A RF+G PS+ + ++GVTGTNGKTS QL+A
Sbjct: 61 YEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVA 120
Query: 124 QAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHA 183
QA LG R GTLG G Y + TTP L + LA L+ GA+AVAMEVSSH
Sbjct: 121 QALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHG 180
Query: 184 LDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLR 243
LDQGRV + +D+ VFTNL+RDHLDYHG ME Y AAKA+LFA D++ VIN+DD FG R
Sbjct: 181 LDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRVINLDDDFGRR 240
Query: 244 LLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVD 303
L G + + S+ + A + + GI LV +RSPL+GRFN+
Sbjct: 241 LA-GEEQDSELITYSLT-DSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLS 298
Query: 304 NLLAVAGVLYALNYALSEIAAVLSTLR 330
NLLA G L L Y L +I L L+
Sbjct: 299 NLLAAVGALLGLGYPLGDILRTLPQLQ 325
>gi|4376699|gb|AAD18562| (AE001625) N-Acetylmuramoylalanylglutamyl
DAP Ligase [Chlamydia pneumoniae]
Length = 483
Score = 236 bits (597), Expect = 2e-61
Identities = 171/476 (35%), Positives = 229/476 (47%), Gaps = 15/476 (3%)
Query: 16 QARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSV 75
+ R + + L DSR V GD G F DA A GA+AI P V
Sbjct: 17 KVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANGAIAIASSLYNPFLSVV 76
Query: 76 PDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSAT 135
+ L A L A +++ +PS + +GVTGTNGKT+ L+ S
Sbjct: 77 QIITPNLEELEAELSA---KYYEYPSSKLHTIGVTGTNGKTTVTCLIKALLDSYQKPSGL 133
Query: 136 CGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYD 195
GT+ L + V+ GFTTP L + LA + + AV MEVSS L GRV ++D
Sbjct: 134 LGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVVMEVSSIGLASGRVAYTNFD 193
Query: 196 VVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRR 254
V TN+T DHLD+HG E Y AAKA+LF+ VIN D P+ + + +
Sbjct: 194 TAVLTNITLDHLDFHGTFETYVAAKAKLFSLVPPSGMVVINTDSPYASQCIESAKAPVIT 253
Query: 255 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYA 314
G+ + AD A + L+ G + LV G + S +G++NV NLLA ++A
Sbjct: 254 YGI----ESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSFIGKYNVYNLLAAISTVHA 309
Query: 315 -LNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHV--C 371
L L ++ + +P GR++ + G DYAHTPDAL VL+ L +
Sbjct: 310 SLRCDLEDLLEKIGLCQPPPGRLDPV--LMGPCPVYIDYAHTPDALDNVLTGLHELLPEG 367
Query: 372 GRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNV 431
GRLI VFGCGG+RDR KR MA + E V VT DNPR E + IV +I GF N
Sbjct: 368 GRLIVVFGCGGDRDRSKRKLMAQVVERYGFAV-VTSDNPRSEPPEDIVNEICDGFYSKNY 426
Query: 432 VKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLAA 487
++ DR D+VLIAGKGHE YQ FDD + VLA+
Sbjct: 427 F-IEIDRKQAITYALSIASDRDIVLIAGKGHEAYQIFKHQTVAFDDKQTVCEVLAS 481
>gi|3328681|gb|AAC67862.1| (AE001299)
UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
trachomatis]
Length = 483
Score = 233 bits (589), Expect = 2e-60
Identities = 172/496 (34%), Positives = 245/496 (48%), Gaps = 26/496 (5%)
Query: 5 MPLAQLLPDIP-----QARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARG 59
M L QLL +IP + + + L DSR V GD +G + A A G
Sbjct: 1 MHLDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANG 60
Query: 60 AVAIL---FEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKT 116
A+A+L + P + + IA+ ++A RF+ +PS+ + ++G+TGTNGKT
Sbjct: 61 AIAVLSSLYNPFLSVVQIIAEDPIALEA------SLAARFYNNPSRHLDVIGITGTNGKT 114
Query: 117 STVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVA 176
+ L+ + G R+ GT+ L + + FTTP + L + A++ + A
Sbjct: 115 TVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAV 174
Query: 177 MEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVIN 235
MEVSS + GRV + V TN+T DHLD+HG +E Y AAK + FA + AV+N
Sbjct: 175 MEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVN 234
Query: 236 VDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSP 295
+D + L+ G + VS H +AD A L L G +D+ +
Sbjct: 235 LDCEYAPSFLN----GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETS 290
Query: 296 LMGRFNVDNLLAVAGVLYA-LNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAH 354
L+G NV N+LA V++ L +++ + L GR++ + G DYAH
Sbjct: 291 LIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPI--LLGPFPVYIDYAH 348
Query: 355 TPDALGQVLSSLSSHV--CGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRG 412
TPDAL V L + GRLI VFGCGG+RDR KR MA ++E + FVT DNPR
Sbjct: 349 TPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSE-HYGFSFVTSDNPRT 407
Query: 413 EDGDGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVR 472
ED D I+ADI GF+ + V V+ DR +D+VL+AGKGHE YQ
Sbjct: 408 EDPDQIIADICKGFSTDHYV-VESDRKLAIEKAISMASDKDIVLVAGKGHEGYQIFKHQT 466
Query: 473 HPFDDTEVARRVLAAM 488
FDD EV LAA+
Sbjct: 467 IVFDDREVVCEALAAL 482
>gi|6457968|gb|AAF09877.1|AE001890_9 (AE001890)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Deinococcus radiodurans]
Length = 490
Score = 226 bits (570), Expect = 3e-58
Identities = 164/482 (34%), Positives = 236/482 (48%), Gaps = 15/482 (3%)
Query: 12 PDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQ 71
P+ D ++G+ ++ VQPG G F+E A A GAVA+L E A
Sbjct: 15 PETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFMEQAQAAGAVAVLGEGLA-D 73
Query: 72 GVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGV 131
G + P + V RA L A GHPS+ + +VGVTGT+GKT+T L G+
Sbjct: 74 GQTSPLPYLTVPNARAALADAAAALAGHPSRELKVVGVTGTDGKTTTSWLTRHLLRSAGL 133
Query: 132 RSATCGTLGVGLYDQVV---PTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGR 188
+ T+G L D + P FTTP Q+ L ++ GAQA +E SSHAL R
Sbjct: 134 ATGLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTLREMVAAGAQATVLEASSHALSLDR 193
Query: 189 VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGL 248
V GV +DV V+T+L+ +HLD+HG +++Y A K +L + + AV+NVDDP+ + L G+
Sbjct: 194 VRGVDWDVAVWTHLSSEHLDFHGTLDNYFADKRKLV--ERARFAVLNVDDPWTAQ-LRGI 250
Query: 249 AKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAV 308
A G + AD AQ + G+ F +V A P++GRFNV N LA
Sbjct: 251 APGETTYSAE---NQHADWRAQDIEERHSGLHFRVVSPAGDFQAELPMIGRFNVANALAG 307
Query: 309 AGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSS 368
+ L ++ A L++ R + GRM + G P D+AHTP +L + L +L +
Sbjct: 308 MAAAHHLGATALQLQAGLASFRGVPGRMELVPGGATSPRVIVDFAHTPPSLEKALGTLRA 367
Query: 369 HVCGRLICVFG-CGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGF- 426
G L V G GG RD KR+ + +A AD +T+++ R I+ ++ G
Sbjct: 368 TTAGHLWVVIGSAGGPRDPYKRAPLGEVATRLADHAILTEEDCRDTPLQDILNEMERGAR 427
Query: 427 --ARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRV 484
R N V + DR D VL+AGKG E E A P+++ AR V
Sbjct: 428 EEGRSNFVSI-GDRREAIRYAVTHAQPGDTVLLAGKGPEDTLERATETLPWNEVAEARAV 486
Query: 485 LA 486
LA
Sbjct: 487 LA 488
>gi|4980735|gb|AAD35328.1|AE001707_15 (AE001707)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Thermotoga maritima]
Length = 490
Score = 222 bits (560), Expect = 5e-57
Identities = 159/489 (32%), Positives = 236/489 (47%), Gaps = 29/489 (5%)
Query: 7 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 66
L L+ ++ D+ I+G+ S +V+ GD I + +GAVA++ E
Sbjct: 10 LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVE 69
Query: 67 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAW 126
+ + + I V R +A F P + + GVTGTNGKT+T ++
Sbjct: 70 ----REIDLDFPYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHML 125
Query: 127 HCLGVRSATCGT-----LGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 181
LG R + T LG YD + TTP + + + + R+ G + A+EVSS
Sbjct: 126 TSLGERGSVLTTAVKRILGNSYYDDI-----TTPDAITILSAMKENREGGGKFFALEVSS 180
Query: 182 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF-AHQDVQAAVINVDDPF 240
HAL Q RV+GV +DV +FTN++RDHLD+HG E+Y AK LF +D AV+N
Sbjct: 181 HALVQQRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN----- 235
Query: 241 GLRLLHGLAKGMRRVGVSVCGHT--DADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMG 298
LA R + T +AD ++ ++ +G F L V + +G
Sbjct: 236 -----ESLADAFNRKSRKITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRAIG 290
Query: 299 RFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRL-GGQDGQPXXXXDYAHTPD 357
FN N A L+ L Y ++A+ L T + GR + G + D+AH+PD
Sbjct: 291 DFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPD 350
Query: 358 ALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDG 417
AL ++L ++ GR+I VFG GG DRGKR M+ +A ADVV +T D+PRGED +
Sbjct: 351 ALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQ 410
Query: 418 IVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRH-PFD 476
I+ D++ G + V DR D V+IAG+GHERYQ + + PF
Sbjct: 411 IMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQ 470
Query: 477 DTEVARRVL 485
D EV ++
Sbjct: 471 DREVVEEII 479
>gi|6093449|sp|O05954|MURE_RICPR
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2073485|emb|CAA72473| (Y11783) UDP-MurNAc-tripeptide
synthetase [Rickettsia prowazekii]
>gi|3861141|emb|CAA15041| (AJ235272)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--
2,6-DIAMINOPIMELATE LIGASE (murE) [Rickettsia
prowazekii]
Length = 480
Score = 221 bits (557), Expect = 1e-56
Identities = 155/480 (32%), Positives = 234/480 (48%), Gaps = 29/480 (6%)
Query: 22 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAIA 81
I GL +S+ V+ + G FI DA GAV ++ E + D I
Sbjct: 14 IKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAI---DKVIY 70
Query: 82 VHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGV 141
V + L + F+ P + ++ VTGTNGK+S V +AQA+ L ++A GT+G+
Sbjct: 71 VEDVHKALYEAIEIFY--PKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKAAFIGTIGL 128
Query: 142 GLYDQV-----VPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDV 196
++ VP+ TT L + L ++ + +A E SSH L+QGR+ ++
Sbjct: 129 EIFGSNNIINDVPS-LTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNI 187
Query: 197 VVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA--AVINVDDP---FGLRLLHGLAKG 251
V FT+ ++DHLDYH E+Y AK +LF + + A++N D F LH
Sbjct: 188 VSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLHNNNVK 247
Query: 252 MRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGV 311
VG D+ ++ +L G D + ++ + ++G F NLL A
Sbjct: 248 FITVGKK------GDLQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALT 301
Query: 312 LYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVC 371
LY + EI L+ ++PI GRM R+ G + DY+HTPD+L + L L +
Sbjct: 302 LYYTGFKFDEIIEALAKVKPIKGRMERIDGTN----IFVDYSHTPDSLEKALIELKNIKL 357
Query: 372 --GRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARP 429
+L +FGCGG+RD+ KR+ M IA AD V +TDDNPR ED I A+I+ G
Sbjct: 358 HGSKLSVIFGCGGDRDKTKRALMGQIAAKLADNVIITDDNPRFEDPKLIRAEIIRGIGTA 417
Query: 430 NVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLAAMS 489
++ R +D++LIAGKGHE YQ + + PFDD+EV R+ L +S
Sbjct: 418 TYTEI-ASRAEAIKYGINNLKQDDILLIAGKGHETYQIIGDKKLPFDDSEVVRKYLFEIS 476
>gi|6456164|gb|AAF09152.1|AC011622_9 (AC011622) putative
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Arabidopsis thaliana]
Length = 767
Score = 203 bits (511), Expect = 3e-51
Identities = 150/499 (30%), Positives = 231/499 (46%), Gaps = 44/499 (8%)
Query: 19 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPD- 77
DV I+G+ DSR V GD F+ +A RGAVA++ A + + + D
Sbjct: 262 DVEITGIQHDSRGVSAGDLFVCCLGSEN----FLSEADKRGAVAVV----ASKEIDIEDT 313
Query: 78 ----GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRS 133
+ V A L A+A F+ HPS+ M+++GVTGT+GKT+T L+ + +GVR+
Sbjct: 314 LGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRT 373
Query: 134 ATCGTLGVGLYDQV---VPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVD 190
T+ ++ P P + + +A++ G +++ ME S L G+ D
Sbjct: 374 GMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELALGKCD 433
Query: 191 GVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ---DVQAAVINVDDPFGLRLLHG 247
V +D+ VFTNLTR++ D+ G E Y A+A+LF+ + V+N+DDP +
Sbjct: 434 EVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAAFFVQ- 492
Query: 248 LAKGMRRVGVSVCG--HTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNL 305
+G V V +T ADV L+L + + S L+GR N+ N+
Sbjct: 493 --QGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIYNI 550
Query: 306 LAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSS 365
LA V A+ L +I + + + GR + + D+A+TPD L ++L S
Sbjct: 551 LAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAF-GVIVDHANTPDGLSRLLDS 609
Query: 366 LSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAG 425
+ R+I V GC GE +RGKR M IA +DV +T DNPR ED I+ D+L+G
Sbjct: 610 IRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLSG 669
Query: 426 -------------------FARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQ 466
A + + + R D+V++AGKGHE YQ
Sbjct: 670 IGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQ 729
Query: 467 EVAGVRHPFDDTEVARRVL 485
+ +DD E R L
Sbjct: 730 LEGEKKEFYDDREECREAL 748
>gi|3256223|emb|CAA74740| (Y14370) UDP-N-acetylmuramyl-tripeptide
synthetase [Staphylococcus aureus]
Length = 492
Score = 199 bits (502), Expect = 3e-50
Identities = 139/457 (30%), Positives = 215/457 (46%), Gaps = 20/457 (4%)
Query: 22 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGA--VAILFEPPAPQGVSVPDGA 79
I + DSR + G F ++ +G V + E P V+
Sbjct: 22 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVT----Q 77
Query: 80 IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTL 139
+ V +A + +PS + GVTGTNGKTS ++ L SA GT
Sbjct: 78 VVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTN 137
Query: 140 GVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVF 199
G + + TTP + L + + + D GA+++ +EVSSH L GR+ V +DV +F
Sbjct: 138 GFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRSVEFDVAIF 197
Query: 200 TNLTRDHLDYHGDMEHYGAAKARLFAH--QDV---QAAVINVDDPFGLRLLHGLAKGMRR 254
+NLT+DHLD+HG ME YG AK+ LF+ +D+ + V+N DD F L +
Sbjct: 198 SNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTPYEVFS 257
Query: 255 VGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYA 314
G+ +A MA+++ +LQG+ FD V V+SP +G+FN+ N++A +++
Sbjct: 258 YGID----EEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAMIAVWS 313
Query: 315 LNYALSEIAAVLSTLRPIHGRMNRLGGQDGQP-XXXXDYAHTPDALGQVLSSLSSHVCGR 373
+L I + L P+ GR+ L P DYAHT D + +++ ++ V +
Sbjct: 314 KGTSLETIIKAVENLEPVEGRLEVL--DPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQK 371
Query: 374 LICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVK 433
LI + G GERD K +M +A AD V T DNP +D + A++ G N ++
Sbjct: 372 LIFLVGMAGERDLTKTPEMGRVA-CRADYVIFTPDNPANDDPKMLTAELAKGATHQNYIE 430
Query: 434 VQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVAG 470
DR D V++A KG E YQ + G
Sbjct: 431 FD-DRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPG 466
>gi|6093450|sp|O83903|MURE_TREPA
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|3323248 (AE001261)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (murE) [Treponema pallidum]
Length = 540
Score = 195 bits (491), Expect = 6e-49
Identities = 159/524 (30%), Positives = 237/524 (44%), Gaps = 62/524 (11%)
Query: 22 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGV------SV 75
+S + DSR V+ G HG +I A GA AI+ + P V V
Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLDTYVVGVYYARV 85
Query: 76 PDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSAT 135
PD R L + A F+ P++A+T++GVTGT GK+STV +AQ G R
Sbjct: 86 PDA-------RCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGF 138
Query: 136 CGTLGVGLYDQVVPTG--FTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALD--QGRVDG 191
T+ L D ++P TTP L + + LA++R+ + +E SSH L R+
Sbjct: 139 ISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQD 198
Query: 192 VHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF----AHQDVQ-------AAVINVDDPF 240
V +DV V N+ +HL++HG E Y KA +F AH ++ V+ +D
Sbjct: 199 VAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDAS 258
Query: 241 GLRLLHGLAKG-----------------MRRVGVSVCGHTDADVMAQHLSL-----NLQG 278
+ K + R+ ++ ++Q L L +Q
Sbjct: 259 AVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTVQE 318
Query: 279 IGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYA-LNYALSEIAAVLSTLRPIHGRMN 337
GA SV PL G FN N+ A VL+ L +L+ A + ++PI GRM
Sbjct: 319 PAQPAQDGAHDVSV--PLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQ 376
Query: 338 RLG-GQDGQPXXXXDYAHTPDALGQVLSSLSSHVCG---RLICVFGCGGERDRGKRSQMA 393
R+ GQD + DYAHTP + ++L L++ V R++ +FG GERD KR+
Sbjct: 377 RVDMGQDFE--VLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQG 434
Query: 394 VIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVK---VQRDRXXXXXXXXXXXX 450
IA A V+ +TD++PRGED GI+ I AG + K + DR
Sbjct: 435 AIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLAR 494
Query: 451 XEDVVLIAGKGHERYQEVAGVRHPFDDTEVARRVLAAMSAQETV 494
+D+VL+ GKGHE A P+D+ AR +L A + +T+
Sbjct: 495 AQDLVLLLGKGHEHSIIYAHTVQPYDEERTARELLRASLSSDTL 538
>gi|4156007 (AE001561) UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE
[Helicobacter pylori J99]
Length = 447
Score = 178 bits (448), Expect = 7e-44
Identities = 128/388 (32%), Positives = 192/388 (48%), Gaps = 29/388 (7%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQ-VVPTGFTTPLVLQLHQCL 164
+VG+TGTNGKT+T L+ L ++A GT G + D+ + G TTP +L+L+ L
Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFIDDKHIKEKGLTTPTLLELYSDL 128
Query: 165 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF 224
+ + MEVSSHA+ Q R+ G+ + + + TN+T DHLD+H ++E+Y AK F
Sbjct: 129 EEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKNSFF 188
Query: 225 AHQDVQAAVINVDD------PFGLRLLHGLAKGMRRV-GVSVCGHTDADVMAQH--LSLN 275
+ ++ VIN D+ P R K V S+ A + QH N
Sbjct: 189 KDEGLK--VINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLRDPN 246
Query: 276 LQGIGFDLVIGADHASVRSPLMGRFNVDNLLA-VAGVLYALNYALSEIAAVLSTLRPIHG 334
L+ + A + SPL+GR+N+ N+LA V GV L IA +L + G
Sbjct: 247 LK----------ETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKG 296
Query: 335 RMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAV 394
R+ + +P D+AHT D + QV S + ++ +FG GG+RD+ KR +M
Sbjct: 297 RLEIV---HSKPLVVVDFAHTTDGMQQVFESFKNQ---KITALFGAGGDRDKTKRPKMGA 350
Query: 395 IAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDV 454
IA A + +T DNPR E+ + I+ DIL G + V V++DR ++V
Sbjct: 351 IASCYAHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEV 410
Query: 455 VLIAGKGHERYQEVAGVRHPFDDTEVAR 482
+LI GKG E Q F D EV +
Sbjct: 411 LLILGKGDENIQIFKDKTIFFSDQEVVK 438
>gi|2314673|gb|AAD08535.1| (AE000648) UDP-MurNac-tripeptide
synthetase (murE) [Helicobacter pylori 26695]
Length = 447
Score = 175 bits (439), Expect = 8e-43
Identities = 127/393 (32%), Positives = 190/393 (48%), Gaps = 39/393 (9%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQ-VVPTGFTTPLVLQLHQCL 164
+VG+TGTNGKT+T L+ L ++A GT G + ++ + G TTP +L+L+ L
Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINNERIKEKGLTTPTLLELYSDL 128
Query: 165 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF 224
+ + MEVSSHA+ Q R+ G+ + + + TN+T DHLD+H +E+Y AK F
Sbjct: 129 EEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQSIENYRDAKNSFF 188
Query: 225 AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 284
+ ++ VIN D+ L V HT A HL N+Q +
Sbjct: 189 KDEGLK--VINRDETNALFN-------------PVNAHTYALDKKAHL--NVQAFSLNPS 231
Query: 285 IGA--------------DHASVRSPLMGRFNVDNLLA-VAGVLYALNYALSEIAAVLSTL 329
I A + A + SPL+GR+N+ N+LA V GV L I +L
Sbjct: 232 ISASLCYQQDLRDPNFKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETIVPLLENF 291
Query: 330 RPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKR 389
+ GR+ + +P D+AHT D + QV S + ++ +FG GG+RD+ KR
Sbjct: 292 YGVKGRLEIV---HSKPLVVVDFAHTIDGMQQVFESFKNQ---KITALFGAGGDRDKTKR 345
Query: 390 SQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGFARPNVVKVQRDRXXXXXXXXXXX 449
+M IA A + +T DNPR E+ + I+ DIL G + V V++DR
Sbjct: 346 PEMGAIASYYAHKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAILNALENL 405
Query: 450 XXEDVVLIAGKGHERYQEVAGVRHPFDDTEVAR 482
++V+LI GKG E Q F D EV +
Sbjct: 406 KDDEVLLILGKGDENIQIFKDKTIFFSDQEVVK 438
>gi|3914073|sp|O51219|MURE_BORBU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2688092 (AE001130)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (murE) [Borrelia burgdorferi]
Length = 508
Score = 155 bits (387), Expect = 1e-36
Identities = 137/506 (27%), Positives = 222/506 (43%), Gaps = 39/506 (7%)
Query: 10 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAIL----- 64
L+ + + D+ ISG+ S+ V P G FIE A +G+ ++
Sbjct: 16 LIKCVKGSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV 75
Query: 65 -FEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLA 123
F P + V D +R + ++ F+ PS+ + ++GVTGT+GK+S +
Sbjct: 76 DFYSPNVTYIKVDD-----FNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIY 130
Query: 124 QAWHCLGVRSATCGTL----GVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 179
+ GV+ T+ G G + P +TP ++H L+ + AQ +E
Sbjct: 131 LLFKKKGVKVGFISTVFFDDGSGSLIKN-PYRQSTPESTEIHSFLSTMVKNEAQYAILES 189
Query: 180 SSHALD--QGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF--AHQDVQAAVIN 235
+SH LD R+ V+Y VVFTN+ +HL++HG +++Y K LF D VIN
Sbjct: 190 TSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVIN 249
Query: 236 VDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSP 295
+DD + + + K S + AD + F+
Sbjct: 250 LDDLYSSDFKNAVKKSFTYSLKS----SKADFFVSFIDEKTDSTRFEFYHKGVKYLANVS 305
Query: 296 LMGRFNVDNLLA-VAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG-GQDGQPXXXXDYA 353
L+G FNV+N++A + V LN + +I L+ ++ + GRM+ + GQ+ DYA
Sbjct: 306 LLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFS--VIIDYA 363
Query: 354 HTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGE 413
HTP A ++ RLI VFG GERD KR IA+ +D++ + D++PRGE
Sbjct: 364 HTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGE 423
Query: 414 DGDGIVADILAGFARPNVVKVQR-------DRXXXXXXXXXXXXXEDVVLIAGKGHERYQ 466
+ I+ DI G V KV+ DR D+V+ GKGHE
Sbjct: 424 NSMCIIKDIAKGI----VNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSI 479
Query: 467 EVAGVRHPFDDTEVARRVLAAMSAQE 492
+++ EV + + ++ E
Sbjct: 480 IYKNREVFWNEQEVVKNAILSLEKSE 505
>gi|6093446|sp|O85298|MURE_BUCAP
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|3435169|gb|AAC32338| (AF060492) meso-diaminopimelate
adding enzyme [Buchnera aphidicola]
Length = 292
Score = 128 bits (318), Expect = 1e-28
Identities = 80/247 (32%), Positives = 124/247 (49%), Gaps = 9/247 (3%)
Query: 10 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 69
L P I S L +DSR++ D G FI +A + VAIL E
Sbjct: 10 LFPWIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKE 69
Query: 70 PQGV-------SVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 122
+ ++P ++ L ++ +A R + P++ + ++GVTGTNGKT+ QL+
Sbjct: 70 KKKHGEINYINNIP--ILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLI 127
Query: 123 AQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSH 182
Q LG + AT GTLG G Y+ + T TT + + L + V MEVSSH
Sbjct: 128 NQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSH 187
Query: 183 ALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGL 242
L Q RV + + + +FTNLT+DHLDYH +M+ Y +AK F+ ++ ++N +D +
Sbjct: 188 GLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQHKIKKIILNANDKYAK 247
Query: 243 RLLHGLA 249
+ L L+
Sbjct: 248 KWLRKLS 254
>gi|6093447|sp|O69290|MURE_CAMJE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,
6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE
SYNTHETASE) (MESO-DIAMINOPIMELATE-ADDING ENZYME)
>gi|2959999|emb|CAA76495| (Y16882)
UDP-N-acetylmuramoylalanyl-D-glutamate--
2,6-diaminopimelate ligase [Campylobacter jejuni]
Length = 350
Score = 111 bits (274), Expect = 2e-23
Identities = 86/290 (29%), Positives = 138/290 (46%), Gaps = 23/290 (7%)
Query: 102 QAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYD-QVVPTGFTTPLVLQL 160
+ + ++G+TGTNGKT+T + LG + CGT G + D Q+ TT +L+
Sbjct: 81 EKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKT 140
Query: 161 HQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 220
+ L + M VSSHAL R +G+++ +FTN+T+DHLD+ G +Y AK
Sbjct: 141 LEYLLIATPKKCDFFIMGVSSHALVPNRSEGLNFAAKIFTNITQDHLDFRGTFGNYKEAK 200
Query: 221 ARLFAHQDVQAAVINVDD-PFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGI 279
F + ++ IN D + + G+ + + A L +GI
Sbjct: 201 ELFFTDESLK--FINKDALAIKFNVRNAFTYGIENPAL-------YQIKAYSLE---EGI 248
Query: 280 GFDLVIGADHASVRSPLMGRFNVDNLL-AVAGVLYALNYALSEIAAVLSTLRPIHGRMNR 338
+ + SPL+G FN+ NLL A A V + L ++ +S + GR+ +
Sbjct: 249 STIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQ 308
Query: 339 LGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGK 388
+ D+AHTPD + +VL +L + +LI VFG GG+RD+ K
Sbjct: 309 VA-----KGVIVDFAHTPDGIEKVLDTLKNK---KLIVVFGAGGDRDKTK 350
>gi|5689960|emb|CAB51997.1| (AL109663) putative
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D -alanyl-alanyl ligase [Streptomyces
coelicolor A3(2)]
Length = 471
Score = 84.3 bits (205), Expect = 2e-15
Identities = 106/370 (28%), Positives = 148/370 (39%), Gaps = 38/370 (10%)
Query: 13 DIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQG 72
DIP A V +V DSRE PG G F GAVA+L P
Sbjct: 19 DIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAARVVEAGAVAVLGSRP---- 74
Query: 73 VSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVR 132
V VP AI V ++A LGA+A H T+V +TG+ GKTST L+AQ
Sbjct: 75 VGVP--AIVVDDVQAALGALAR--HVVRRLGTTLVALTGSAGKTSTKDLIAQVLRRKAPT 130
Query: 133 SATCGTLG--VGL-YDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRV 189
T G++ VGL + T T LVL++ GA+ + L ++
Sbjct: 131 VFTPGSMNNEVGLPLTALTATDETKFLVLEM----------GARGIGHIRYLTELTPPKI 180
Query: 190 DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF----AHQDVQAAVINVDDPFGLRLL 245
V N+ H+ G E AK L ++ AA++N DDP L+
Sbjct: 181 GAV-------LNVGSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDP----LV 229
Query: 246 HGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQG-IGFDLVIGADHASVRSPLMGRFNVDN 304
+A + + +ADV A+++ L G F L + + V L G +V N
Sbjct: 230 RAMASRTKAKVILFGESGEADVRAENVRLTDTGQPSFSLHTPSGASDVTMRLYGEHHVSN 289
Query: 305 LLAVAGVLYALNYALSEIAAVLSTLRPI-HGRMNRLGGQDGQPXXXXDYAHTPDALGQVL 363
LA A V + L + EIA LS + RM DG Y P++ L
Sbjct: 290 ALAAAAVAHELGMSADEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESTKAAL 349
Query: 364 SSLSSHVCGR 373
+L + GR
Sbjct: 350 RALVAMGKGR 359
>gi|5689958|emb|CAB51995.1| (AL109663) putative
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Streptomyces coelicolor A3(2)]
Length = 471
Score = 76.1 bits (184), Expect = 6e-13
Identities = 74/247 (29%), Positives = 109/247 (43%), Gaps = 36/247 (14%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
+ VTGTNGKT+TVQ+LA G+R+A G +GV L D V TG
Sbjct: 118 LAVTGTNGKTTTVQMLASILKAAGLRTAAVGNIGVSLLDAV--TG--------------- 160
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH 226
++ +A+E+SS+ L H V+ NL DHLD+HG ME Y A K R++
Sbjct: 161 --EQEYDVLAVELSSYQLHWAPSLRAHSAAVL--NLAPDHLDWHGSMEAYAADKGRIYEG 216
Query: 227 QDVQAAVINVDDPFGLRLLHG--LAKGMRRVGV-------SVCGHTDADVMAQHLSLNLQ 277
V A V NV D L+ + +G R +G S G + ++ + + Q
Sbjct: 217 NHV-ACVYNVADKATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVEGLLVDRAFVEDRQ 275
Query: 278 GIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMN 337
+L A+ + V P N+ N LA AG+ A + + + L P R+
Sbjct: 276 KNAQEL---AEVSDVNPP--APHNIANALAAAGLARAFGVSAAAVRDGLRAFTPDAHRIA 330
Query: 338 RLGGQDG 344
+ DG
Sbjct: 331 HVADVDG 337
>gi|2621604 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase
related protein [Methanobacterium thermoautotrophicum]
Length = 682
Score = 74.9 bits (181), Expect = 1e-12
Identities = 110/413 (26%), Positives = 153/413 (36%), Gaps = 83/413 (20%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
+VGVTGTNGKT+T +L G+R L + ++VP L +L +A
Sbjct: 298 VVGVTGTNGKTTTTGMLKSIMRVAGMRVPE-HHLNIQGNTELVPA-----LQARLPGDVA 351
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 225
+ + G E+ S A+ G V V TN++RDHL Y K +
Sbjct: 352 VV-EIGTFGRRGEIRSSAMLSG------VSVGVITNISRDHLSAGRRFSDYIECKGEMV- 403
Query: 226 HQDVQAAVINVDDPFGLRLLHGLAKGM--------------------------------R 253
+ + V+N DDP L GL + R
Sbjct: 404 -EVAEDLVLNADDPIVASLADGLPRERVVFYGIQSSESGGVVPEGRECPKCGKPLRYTRR 462
Query: 254 RVG-----VSVCGHT--DADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLL 306
+G +CG+ DVMA S GF LVIG + VR G FNV N L
Sbjct: 463 TIGHLGDYQCICGYLRPQPDVMAIEASPG----GFKLVIGQEMREVRLATPGIFNVYNAL 518
Query: 307 AVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSL 366
A A + + + +I L + + + GR L P DYAH P + V+ L
Sbjct: 519 AAAATAWTMGLEIDDIVRGLESFKGVPGRFQEL---SESPRIILDYAHNPAGVRAVMQDL 575
Query: 367 SSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPR------GEDGDGIVA 420
GRLI V E ++A I + +ADVV R GE I +
Sbjct: 576 RGK--GRLIVVNTVASESGIDGDREIAAILK-DADVVIPASYAARRASDILGERAVHIGS 632
Query: 421 DIL------AGFARPNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQE 467
+ G +R V + R +D VLI G+G RY E
Sbjct: 633 SRMRAGGGTLGASREQVAEAVR-------KALELAGPDDTVLIIGEGGYRYAE 678
Score = 36.0 bits (81), Expect = 0.75
Identities = 23/78 (29%), Positives = 36/78 (45%), Gaps = 3/78 (3%)
Query: 298 GRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPD 357
G FN++N LA V L + + +I + R I GR + DG D AH P+
Sbjct: 14 GIFNIENALAAITVALILGFDMEDIKRSIEDFRGIRGRFEFIDEVDG-VRVYMDAAHNPE 72
Query: 358 ALGQVLSSLSSHVCGRLI 375
++ ++ + GRLI
Sbjct: 73 SMEKLFEGMEFQ--GRLI 88
>gi|3122417|sp|O33804|MURF_STRTO PROBABLE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME) >gi|2228594 (U82965)
MurX [Streptomyces toyocaensis]
Length = 443
Score = 68.3 bits (164), Expect = 1e-10
Identities = 126/461 (27%), Positives = 168/461 (36%), Gaps = 57/461 (12%)
Query: 21 VISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAI 80
V + V+DSR+ +PG G + E A GAVA+L P S+P +
Sbjct: 24 VTAPAVLDSRQAEPGGFCRFAGEHAD-GHDYAERAGRAGAVAVLGSRPT----SLP--TV 76
Query: 81 AVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLG 140
V +R L +A +T+VGVTG+ GKT T LLA G AT G+L
Sbjct: 77 VVEDVRTALQTLAAHVVARLRDGLTVVGVTGSQGKTGTKDLLAAVLSAHGPTVATTGSLN 136
Query: 141 VGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGA-QAVAMEVSS-HALDQGRVDG-VHYDVV 197
+L L LR + A + + +E+ + H D + G V D+
Sbjct: 137 -----------------NELGVPLTMLRAQAATRFLVLEMGARHEGDIAELTGLVAPDIA 179
Query: 198 VFTNLTRDHLDYHGDMEHYGAAKARLF-AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVG 256
V N+ H+ G AK L AV+N DDP + + L G
Sbjct: 180 VVLNVGVAHVGEFGSRAAIARAKGELVQGLVPGGTAVLNADDP-RVASMSVLTDG----P 234
Query: 257 VSVCGHTD-ADVMAQHLSLNLQGIG---FDLVIGADHASVRSPLMGRFNVDNLLAVAGVL 312
V G TD ADV Q L + G+G L A + PL+G N A A
Sbjct: 235 VLTFGRTDPADV--QVLDVVFDGLGRPSCTLRTVDTSARLALPLVGAHQALNASAAAAAA 292
Query: 313 YALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCG 372
A L L+T R G N G D L +LS+ G
Sbjct: 293 LAAGVPLDLATTALTTARCRRGGWNCATSLRGDVLNDSTTPTRTDP--AALDALSAIEGG 350
Query: 373 RLICVFGCG---GERDRGKRSQMAVIAESNADVVFVTDDNPRG-EDGDGIVADILAGFAR 428
R I V G G+ + + A + ADVV + R DG G A + AG
Sbjct: 351 RRIAVLGEMLELGDGSEAEHRAVGAYAAARADVVVAVGEAARPFADGAGERAVVFAG--N 408
Query: 429 PNVVKVQRDRXXXXXXXXXXXXXEDVVLIAGKGHERYQEVA 469
V RD DVVL+ R EVA
Sbjct: 409 DAAVDWLRDHLAAG----------DVVLVKASRGARLDEVA 439
>gi|6225735|sp|Q9ZDC2|MURD_RICPR
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME)
>gi|3860967|emb|CAA14867| (AJ235271)
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD)
[Rickettsia prowazekii]
Length = 445
Score = 66.7 bits (160), Expect = 4e-10
Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 101 SQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQL 160
S+ + + +TGTNGK++T L++ + G+ G +GV
Sbjct: 101 SKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQ--------------- 145
Query: 161 HQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 220
A+ +EG +E+SS LD V V V N+T DHLD + DM Y AAK
Sbjct: 146 ----AKASNEG---YVLELSSFQLDL--VKSFTVKVAVLLNITPDHLDRYQDMNDYIAAK 196
Query: 221 ARLFAHQDVQA-AVINVDDPFGLRLLHGLAK--GMRRVGVSVCGHTDADVMAQHLSLNLQ 277
A++F D + AVIN+D+ + ++ L K ++ + SV + ++
Sbjct: 197 AKIFDRMDKDSYAVINIDNDYCRKIFVLLQKDQSIKLIPFSVTKILKNGISIVDDKIHDN 256
Query: 278 GIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMN 337
+ + L + + L G N +N+ A V + +I +S+ + +H RM
Sbjct: 257 DLTYKLPLNKN-------LQGLHNCENIAASYAVAKIIGLESKKILESISSFQSLHHRMQ 309
Query: 338 RLG 340
+G
Sbjct: 310 YIG 312
>gi|6460318|gb|AAF12038.1|AE002079_3 (AE002079)
UDP-N-acetylmuramoylalanine--D-glutamiate ligase
[Deinococcus radiodurans]
Length = 457
Score = 66.0 bits (158), Expect = 7e-10
Identities = 67/225 (29%), Positives = 89/225 (38%), Gaps = 41/225 (18%)
Query: 104 MTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQC 163
+ MVG+TGT GK ST L+AQ G+R+ G + L D V
Sbjct: 119 LPMVGITGTAGKGSTTVLIAQLLRACGLRAREGGNIDPPLLDVV---------------- 162
Query: 164 LAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
+ A+ +E+SS L+ RV G+ V V TNL DHLD HG +E Y AAK +
Sbjct: 163 ------DDAEVAVVELSSFQLE--RVPGLRLPVAVITNLGVDHLDRHGSVETYHAAKLNI 214
Query: 224 FAHQDVQAAVINVDD-------------PFGLRLLHG---LAKGMRRVGVSVCGHTDADV 267
A Q ++ D P L L G L GV A +
Sbjct: 215 TAGQQSGDVLVRPADLPVPTRAQTVTFTPERLCLRDGQEVLPVADLPPGVHPANAAAALL 274
Query: 268 MAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVL 312
A+ L +L G D + AD P+ GRF L G +
Sbjct: 275 AAEALLRHL-GRAVDPAVLADALRAAQPVKGRFETVGQLGEVGFI 318
>gi|2621606 (AE000836) UDP-N-acetylmuramyl tripeptide synthetase
related protein [Methanobacterium thermoautotrophicum]
Length = 404
Score = 65.6 bits (157), Expect = 9e-10
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
V VTGTNGKT+T ++A G R G G G G+T + + +
Sbjct: 93 VAVTGTNGKTTTASMIAHVLESSGWRVLLGGNAGGGF------DGYT--------EVILR 138
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH 226
+E + +EV L+ + D+ V TNL DHL++HG ME+Y + A
Sbjct: 139 AAEEEFDYIVVEVCDMTLEFAS-ECFDIDLAVITNLGEDHLNFHGSMENYRESVASFL-- 195
Query: 227 QDVQAAVINVDDPFGLRLLHGLAKGMRRV---GVSVCGHTDADVMAQHLSLNLQGIGFDL 283
+ +A VI+ D+P L G + M G V + A + L+ +G
Sbjct: 196 -EGRAVVISADEPHLEELTSGASSVMEYTPYRGELVLEGEFNRLNAGAAAEALEFLGVPS 254
Query: 284 VIGADHASVRSPLMGR---FNVDNLLAVAG 310
+ + H SV P+ GR F+V++ L VAG
Sbjct: 255 EVISRHLSVFRPVAGRIRSFSVNDALVVAG 284
>gi|2507071|sp|P11880|MURF_ECOLI
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME) >gi|1743865 (U67891)
UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme
[Escherichia coli] >gi|1786274 (AE000118)
D-alanine:D-alanine-adding enzyme [Escherichia coli]
Length = 452
Score = 62.5 bits (149), Expect = 8e-09
Identities = 83/336 (24%), Positives = 132/336 (38%), Gaps = 33/336 (9%)
Query: 7 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 66
L +L Q D+ + + D+R++ PG F + A A GA A+L
Sbjct: 9 LTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVS 68
Query: 67 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGH-PSQAMTMVGVTGTNGKTSTVQLLAQA 125
P + +P + V R G +A P++ +V +TG++GKTS ++ A
Sbjct: 69 RPLD--IDLPQ--LIVKDTRLAFGELAAWVRQQVPAR---VVALTGSSGKTSVKEMTAAI 121
Query: 126 WHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALD 185
G T G L D VP L +L E AV ++H
Sbjct: 122 LSQCGNTLYTAGNLN---NDIGVP------------MTLLRLTPEYDYAVIELGANH--- 163
Query: 186 QGR----VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVINVDDPF 240
QG V + + NL HL+ G + AK +F+ + A++N D+
Sbjct: 164 QGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNND 223
Query: 241 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRF 300
L + G R+V ++D A ++ + G F L V PL GR
Sbjct: 224 WLNWQSVI--GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRH 281
Query: 301 NVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 336
N+ N LA A + ++ L I A L+ L+ + GR+
Sbjct: 282 NIANALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317
>gi|3122403|sp|O06222|MURD_MYCTU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME)
>gi|2104323|emb|CAB08672| (Z95388) murD [Mycobacterium
tuberculosis]
Length = 486
Score = 62.5 bits (149), Expect = 8e-09
Identities = 67/250 (26%), Positives = 100/250 (39%), Gaps = 30/250 (12%)
Query: 109 VTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLR 168
VTGTNGKT+T +L G R+ CG +G + D +
Sbjct: 118 VTGTNGKTTTTSMLHAMLIAGGRRAVLCGNIGSAVLD---------------------VL 156
Query: 169 DEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQD 228
DE A+ +A+E+SS L + + N+ DHLD+H M Y AAKAR+
Sbjct: 157 DEPAELLAVELSSFQLHW--APSLRPEAGAVLNIAEDHLDWHATMAEYTAAKARVLTG-- 212
Query: 229 VQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGAD 288
AV +DD LL G + RVG + ++ + L + DL +
Sbjct: 213 -GVAVAGLDDSRAAALLDG-SPAQVRVGFRLGEPAARELGVRDAHLVDRAFSDDLTL-LP 269
Query: 289 HASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXX 348
AS+ P+ G V + LA A + ++ IA +++ R R + DG
Sbjct: 270 VASI--PVPGPVGVLDALAAAALARSVGVPAGAIADAVTSFRVGRHRAEVVAVADGITYV 327
Query: 349 XXDYAHTPDA 358
A P A
Sbjct: 328 DDSKATNPHA 337
>gi|96537|pir||S10691 UDP-N-acetylmuramyl-tripeptide synthetase -
Escherichia coli (fragment) >gi|581175|emb|CAA39334|
(X55814) UDP-N-acetylmuramyl-tripeptide synthetase
[Escherichia coli]
Length = 124
Score = 61.3 bits (146), Expect = 2e-08
Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 10 LLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA 69
L P +P A + + +DSR GD G +I A A+G AI+ E
Sbjct: 10 LAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKD 69
Query: 70 PQGVSVPDGAIA-VHG--------LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTST 118
DG I +HG L RL A+A RF+ PS + +VGVTGTNGKT+T
Sbjct: 70 ----EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTT 123
>gi|2177096 (U67893) UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme
[Escherichia coli]
Length = 452
Score = 60.9 bits (145), Expect = 2e-08
Identities = 82/336 (24%), Positives = 131/336 (38%), Gaps = 33/336 (9%)
Query: 7 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 66
L +L Q D+ + + D+R++ PG F + A A GA A+L
Sbjct: 9 LTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVS 68
Query: 67 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGH-PSQAMTMVGVTGTNGKTSTVQLLAQA 125
P + +P + V R G +A P++ +V +TG++GKTS ++ A
Sbjct: 69 RPLD--IDLPQ--LIVKDTRLAFGELAAWVRQQVPAR---VVALTGSSGKTSVKEMTAAI 121
Query: 126 WHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALD 185
G T G L D VP L +L E AV ++H
Sbjct: 122 LSQCGNTLYTAGNLN---NDIGVP------------MTLLRLTPEYDYAVIELGANH--- 163
Query: 186 QGR----VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVINVDDPF 240
QG V + + NL HL+ G + AK +F+ + A++N D+
Sbjct: 164 QGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNND 223
Query: 241 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRF 300
L + G R+V ++D A ++ + G F L V PL GR
Sbjct: 224 WLNWQSVI--GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRH 281
Query: 301 NVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 336
N+ N L A + ++ L I A L+ L+ + GR+
Sbjct: 282 NIANALTAAALSMSVGATLDAIKAGLANLKAVPGRL 317
>gi|78921|pir||S04846 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase (EC
6.3.2.15) precursor - Escherichia coli
>gi|40854|emb|CAA38863.1| (X55034)
UDP-MurNac-pentapeptide presynthetase (AA -20 to 432)
[Escherichia coli] >gi|42048|emb|CAA33473| (X15432)
UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432)
[Escherichia coli] >gi|216500|dbj|BAA01351| (D10483)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl D alanine ligase precursor
[Escherichia coli]
Length = 452
Score = 60.1 bits (143), Expect = 4e-08
Identities = 77/332 (23%), Positives = 128/332 (38%), Gaps = 25/332 (7%)
Query: 7 LAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFE 66
L +L Q D+ + + D+R++ PG F + A A A A+L
Sbjct: 9 LTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGAAGALLVS 68
Query: 67 PPAPQGVSVPDGAIAVHGLRARLGAMADRFHGH-PSQAMTMVGVTGTNGKTSTVQLLAQA 125
P + +P + V R G +A P++ +V +TG++GKTS ++ A
Sbjct: 69 RPLD--IDLPQ--LIVKDTRLAFGELAAWVRQQVPAR---VVALTGSSGKTSVKEMTAAI 121
Query: 126 WHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALD 185
G T G L + + T + + A + E A V++ AL
Sbjct: 122 LSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPERAL- 180
Query: 186 QGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH-QDVQAAVINVDDPFGLRL 244
NL HL+ G + AK +F+ + A++N D+ L
Sbjct: 181 -------------VNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNW 227
Query: 245 LHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDN 304
+ G R+V ++D A ++ + G F L V PL GR N+ N
Sbjct: 228 QSVI--GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIAN 285
Query: 305 LLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 336
LA A + ++ L I A L+ L+ + GR+
Sbjct: 286 ALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317
>gi|3122410|sp|P73668|MURD_SYNY3
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME)
>gi|1652794|dbj|BAA17713| (D90908)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Synechocystis sp.]
Length = 452
Score = 59.3 bits (141), Expect = 7e-08
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 103 AMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQ 162
A+ VG+TGTNGKT+T L+ + G+ + CG +G
Sbjct: 105 AVPWVGITGTNGKTTTTSLVQAIFQKAGLNAPACGNIGYA-------------------A 145
Query: 163 CLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKAR 222
C L+++ + E+SS+ ++ + + ++T T DHL H +E+Y KA
Sbjct: 146 CELVLQNQNYDWIVAEISSYQIESSPT--LAPQIGLWTTFTPDHLSRHKTLENYFNIKAS 203
Query: 223 LFAHQDVQAAVINVDDP 239
L + +Q V+N DDP
Sbjct: 204 LLSRSAIQ--VLNGDDP 218
>gi|3122402|sp|O06220|MURF_MYCTU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME)
>gi|2104321|emb|CAB08670| (Z95388) murF [Mycobacterium
tuberculosis]
Length = 510
Score = 58.9 bits (140), Expect = 9e-08
Identities = 96/369 (26%), Positives = 137/369 (37%), Gaps = 44/369 (11%)
Query: 22 ISGLV-MDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDGAI 80
++G V DSR + PG G A A GA +L P V
Sbjct: 30 VTGTVEFDSRAIGPGGLFLALPGARADGHDHAASAVAAGAAVVLAARPVGVPAIVVPPVA 89
Query: 81 AVHGLR------------ARLGAMADRFHGHPSQ----AMTMVGVTGTNGKTSTVQLLAQ 124
A + L A L A+A +Q +T++G+TG++GKTST L+A
Sbjct: 90 APNVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAA 149
Query: 125 AWHCLGVRSATCGTLGVGL---YDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 181
LG A G+ L + + T T L+L++ R G A E++
Sbjct: 150 VLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEM-----AARHHGNIAALAEIAP 204
Query: 182 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL-FAHQDVQAAVINVDDPF 240
++ V N+ HL G E KA L A A V+N DDP
Sbjct: 205 PSIG------------VVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDP- 251
Query: 241 GLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLN-LQGIGFDLVIGADHASVRSPLMGR 299
+ +AK V V DV A +SL+ L F L A VR + G
Sbjct: 252 ---AVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGD 308
Query: 300 FNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI-HGRMNRLGGQDGQPXXXXDYAHTPDA 358
V N L A V ++ ++AA L+ P+ RM DG Y PD+
Sbjct: 309 HQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDS 368
Query: 359 LGQVLSSLS 367
+ L +L+
Sbjct: 369 MRAGLQALA 377
>gi|3393028|emb|CAA06440| (AJ005201) cyanophycin synthetase
[Anabaena variabilis]
Length = 901
Score = 58.9 bits (140), Expect = 9e-08
Identities = 91/362 (25%), Positives = 148/362 (40%), Gaps = 34/362 (9%)
Query: 90 GAMADR-FHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVV 148
GA+ D F S + ++ VTGTNGKT+T +LLA + G T G + D +V
Sbjct: 471 GAVMDMLFPNEQSGRIPILSVTGTNGKTTTTRLLAHIYKQTGKVVGYTTTDGTYIGDYLV 530
Query: 149 PTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD 208
+G T L+D + +E + + + + +V V N+ DHL
Sbjct: 531 ESGDNT----GPQSAHVILQDPTVEVAVLETARGGILRSGLGFESANVGVVLNVAADHLG 586
Query: 209 YHGDMEHYG-AAKARLFAHQDVQA---AVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTD 264
GD++ A + + V AV+N DD R + +A+ + + D
Sbjct: 587 I-GDIDTIDQLANLKSVVAESVYPDGYAVLNADD----RRVAAMAEKTKANIAYFTMNPD 641
Query: 265 ADVMAQHLSLN----LQGIGFDLVIGAD--HASVRS---PLM--GR--FNVDNLLAVAGV 311
++++ +H+ + G+ ++ D H R+ PL GR F + N LA +
Sbjct: 642 SELVRKHIQKGGVAAVYENGYLSIVKGDWTHRIERAEQIPLTMGGRAPFMIANALAASLA 701
Query: 312 LYALNYALSEIAAVLSTLR----PIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLS 367
+ N ++ +I A L T R GRMN G DYAH P + V + +
Sbjct: 702 AFVQNVSIEQIRAGLRTFRASVSQTPGRMNLF--NLGNYHALVDYAHNPASYEAVGAFVR 759
Query: 368 SHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFV-TDDNPRGEDGDGIVADILAGF 426
+ G+ I V G G+R + +A D + V DD+ RG A I G
Sbjct: 760 NWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDDDTRGRPRGSASALITKGI 819
Query: 427 AR 428
+
Sbjct: 820 TQ 821
>gi|5834372|gb|AAD53938.1|AF179611_22 (AF179611)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Zymomonas mobilis]
Length = 269
Score = 58.2 bits (138), Expect = 2e-07
Identities = 49/151 (32%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 89 LGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVV 148
L A A F + +VG+TGTNGK++T L+ G+ + G +G+ L
Sbjct: 107 LFAQAHGFWERHGRRCPVVGITGTNGKSTTTALIHHILKEAGLPTLMGGNIGLPLL---- 162
Query: 149 PTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD 208
L D G +E+SS+ +D + D+ V TN+T DHLD
Sbjct: 163 --------------AADPLPDGGVYV--LELSSYQIDLTFT--LDCDIAVLTNITPDHLD 204
Query: 209 YHGDMEHYGAAKARLFAHQ-DVQAAVINVDD 238
HG E Y AK RLF Q AVI DD
Sbjct: 205 RHGGFEGYRKAKERLFLLQSSPHYAVIATDD 235
>gi|6093445|sp|O83873|MURD_TREPA
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|3323217 (AE001259)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
[Treponema pallidum]
Length = 532
Score = 57.0 bits (135), Expect = 3e-07
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQC-L 164
++ V+G+ GK+ST L + LG + G V + V T TP+VL+L L
Sbjct: 119 LLAVSGSKGKSSTASALCYSLRALGFPAFLGGNSTVSPLEFVRHTTPATPVVLELSSWQL 178
Query: 165 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLF 224
A LR A++ H + + + ++ + T + DH +++ DME Y A K L+
Sbjct: 179 ADLR-------AVDAQDHTVHHAGL--LRPEIAIMTPIMADHQNWYADMESYVADKQVLY 229
Query: 225 AHQDVQAAVI-NVDDPFGLR 243
AHQ ++ N DD +G R
Sbjct: 230 AHQGTHDTLLCNADDGWGPR 249
>gi|3080475|emb|CAA18670.1| (AL022602) udp-n-acetylmuramoylalanine--
d-glutamate ligase [Mycobacterium leprae]
Length = 490
Score = 56.6 bits (134), Expect = 5e-07
Identities = 55/184 (29%), Positives = 78/184 (41%), Gaps = 31/184 (16%)
Query: 65 FEPPAPQGVSVPDGAIAVHG---LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121
F P P V+ + + G L RL A ++G P + + VTGTNGKT+T +
Sbjct: 80 FAPTTPVLVAASAARVPIWGDVELAWRLDAAG--YYGPPRRWLV---VTGTNGKTTTTSM 134
Query: 122 LAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 181
L RS CG +G + D V T F P + +A+E+SS
Sbjct: 135 LHAMLAADNRRSLLCGNIGRPVLD--VLTEFAEP----------------SDFLAVELSS 176
Query: 182 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFG 241
L + + V N+ DHLD+H M Y AKAR+ + AV+ +DD
Sbjct: 177 FQLHW--APSLRPEAGVVLNIAEDHLDWHSTMADYTMAKARVLTG---RVAVVGLDDSRA 231
Query: 242 LRLL 245
LL
Sbjct: 232 AALL 235
>gi|6225734|sp|Q9ZDS8|MURC_RICPR UDP-N-ACETYLMURAMATE--ALANINE
LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE)
>gi|3860809|emb|CAA14709| (AJ235271)
UDP-N-ACETYLMURAMATE--ALANINE LIGASE (murC) [Rickettsia
prowazekii]
Length = 495
Score = 55.4 bits (131), Expect = 1e-06
Identities = 65/322 (20%), Positives = 139/322 (42%), Gaps = 44/322 (13%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
V V+G++GKT+T L+A CL + C T+ G ++ T + + +A+
Sbjct: 116 VAVSGSHGKTTTTSLIA----CLFEAAGLCPTVING---GIINNKSTNAYLGSSNYLIAE 168
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDME-HYGAAKARLFA 225
+ A + + + + + TN+ +HLDY+ D E GA ++ +
Sbjct: 169 ADESDATFIHIPST---------------IAIITNIDPEHLDYYQDFEILIGAFRSFITN 213
Query: 226 HQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVI 285
AV +D +L+ + + R++ DA ++A +++ ++ FD+ I
Sbjct: 214 LPFYGFAVCCIDHKIVRKLVDDITE--RKIITYGIDSEDAHIIAFNINTDIASSTFDVKI 271
Query: 286 GADHA-------SVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNR 338
+ + P GR N+ N LA V L++ + I + + + R +
Sbjct: 272 SLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTK 331
Query: 339 LGGQDGQPXXXXDYAHTPDALGQVLS---SLSSHVCGRLICVFGCGGERDRGKRSQMA-- 393
+ + + DYAH P+ + L+ ++++ G++I +F + R R +
Sbjct: 332 V-AEYNKAVIIDDYAHHPEEIKATLATAKNIANQQNGKVIAIF----QPHRYSRIKYLFD 386
Query: 394 --VIAESNADVVFVTDDNPRGE 413
++ ++AD++++T+ GE
Sbjct: 387 DFMLCFADADILYITNIYAAGE 408
>gi|3090871 (AF035938) uridine diphosphate
N-acetylmuramoyl-L-alanine:D-glutamate ligase
[Streptococcus pyogenes]
Length = 452
Score = 53.9 bits (127), Expect = 3e-06
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 32/236 (13%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
++G+TG+NGKT+T ++A + G + G +G P + + +A
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGY-------------PASKVVQKAIA 160
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 225
+ ME+SS L V+ + V TNL HLDYHG E Y AAK + A
Sbjct: 161 ------GDTLVMELSSFQLVG--VNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQA 212
Query: 226 HQ-DVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 284
+ ++N + LAK + + T V +L + +
Sbjct: 213 QMTESDYLILNANQEISAT----LAKTTQATVIPF--STQKVVDGAYLKDGILYFKEQAI 266
Query: 285 IGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG 340
I A V G N++N LA V A IA LS + R+ R+G
Sbjct: 267 IAATDLGV----PGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQRVG 318
>gi|5834369|gb|AAD53935.1|AF179611_19 (AF179611)
UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis]
Length = 486
Score = 53.9 bits (127), Expect = 3e-06
Identities = 69/281 (24%), Positives = 111/281 (38%), Gaps = 35/281 (12%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
V V GT+GKT+T ++A L G D V G ++ + A+
Sbjct: 111 VAVAGTHGKTTTTSMVA-------------ALLDAGGIDPTVINGG----IINSYGSNAR 153
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH 226
L D V + S + R+DG + + TN+ +HLD++G E A ++
Sbjct: 154 LGDSDWMVVEADESDGSF--LRLDGT---LAIVTNIDPEHLDHYGSFEKVQDAFVEFVSN 208
Query: 227 QDVQ-AAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVI 285
AA + +D P +L + RR+ ++ AD+ A ++ G F VI
Sbjct: 209 VPFYGAAFLCIDHPVVQSILPRIRD--RRL-ITYGFSAQADIRAVDITPISGGNRFTAVI 265
Query: 286 GADHASVRS------PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRL 339
+R P+ GR N+ N L+ GV + + I + + R +R+
Sbjct: 266 RGRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRV 325
Query: 340 GG---QDGQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICV 377
G DG DY H P + VLS+ R+I V
Sbjct: 326 GEIKICDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366
>gi|417327|sp|Q03522|MURD_BACSU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|478078|pir||D47691
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC
6.3.2.9) - Bacillus subtilis >gi|580932|emb|CAA78769|
(Z15056) murD [Bacillus subtilis]
>gi|2633891|emb|CAB13393| (Z99111)
UDP-N-acetylmuramoylalanine D-glutamate ligase [Bacillus
subtilis]
Length = 451
Score = 53.1 bits (125), Expect = 5e-06
Identities = 61/269 (22%), Positives = 106/269 (38%), Gaps = 39/269 (14%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
+G+TG+NGKT+T L+ + ++ G +G T + H
Sbjct: 116 IGITGSNGKTTTTTLIYEMLKADSQKALIAGNIG------------TVASEVAYHA---- 159
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHY---DVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
+G + + E+SS L G H ++ + N+ HLDYH E+Y AK ++
Sbjct: 160 ---DGDEWIVTELSSFQLM-----GTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 211
Query: 224 FAHQDV-QAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGI-GF 281
+ HQ A++N DD +RL + VS A V + N + I
Sbjct: 212 YLHQTASDKAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAILPL 271
Query: 282 DLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGG 341
+ V+ L G N++N+LA V+ + + VL++ + R+ +
Sbjct: 272 EEVV----------LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT 321
Query: 342 QDGQPXXXXDYAHTPDALGQVLSSLSSHV 370
+G+ A A + LS+ V
Sbjct: 322 VNGRKFYNDSKATNILATSKALSAFDKPV 350
>gi|1171072|sp|P45063|MURD_HAEIN
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|1075422|pir||B64185
UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574691 (U32793)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
[Haemophilus influenzae Rd]
Length = 437
Score = 53.1 bits (125), Expect = 5e-06
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 33/239 (13%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
+VG+TG+NGK++ L+ + GV+ G +G+
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP---------------------AL 145
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 225
L +E + +E+SS L+ + N+T DH+D + D+E Y AK R++
Sbjct: 146 SLLNEDCELYVLELSSFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY- 202
Query: 226 HQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVI 285
+ + V+N +D RL G + + VS ++ + + ++++
Sbjct: 203 -HNAKVGVLNNED----RLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVIL 257
Query: 286 GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDG 344
+ A+ L+GR N N+LA + A+ L I L + + R + +G
Sbjct: 258 PCEEAT----LVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVHQANG 312
>gi|1652973|dbj|BAA17890| (D90910) hypothetical protein
[Synechocystis sp.]
Length = 873
Score = 53.1 bits (125), Expect = 5e-06
Identities = 85/351 (24%), Positives = 131/351 (37%), Gaps = 42/351 (11%)
Query: 98 GHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLV 157
G PS+ + ++ VTGTNGKT+T +LLA + G T + + + V G T
Sbjct: 483 GTPSR-IPILAVTGTNGKTTTTRLLAHIYRQTGKTVGYTSTDAIYINEYCVEKGDNTGP- 540
Query: 158 LQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDM---E 214
LRD + +E + + + + DV V N+ DHL GD+ E
Sbjct: 541 ---QSAAVILRDPTVEVAVLETARGGILRAGLAFDTCDVGVVLNVAADHLGL-GDIDTIE 596
Query: 215 HYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLS 273
K+ + D AV+N DDP L+ +A ++ + D V+ H+
Sbjct: 597 QMAKVKSVIAEVVDPSGYAVLNADDP----LVAAMADKVKAKVAYFSMNPDNPVIQNHIR 652
Query: 274 LNLQGIGFDLVIGADHASVRS-------------PL----MGRFNVDNLLAVAGVLYALN 316
N G V + + S+ P+ M F + N LA +
Sbjct: 653 RN----GIAAVYESGYVSILEGSWTLRVEEATLIPMTMGGMAPFMIANALAACLAAFVNG 708
Query: 317 YALSEIAAVLSTL----RPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHVCG 372
+ I + T GRMN G+ DYAH P V + +
Sbjct: 709 LDVEVIRQGVRTFTTSAEQTPGRMNLFNL--GRYHALVDYAHNPAGYRAVGDFVKNWHGQ 766
Query: 373 RLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADIL 423
R V G G RD + A+ ++ DD+ RG G G AD++
Sbjct: 767 RFGVVGGPGDRRDSDLIELGQIAAQVFDRIIVKEDDDKRGRSG-GETADLI 816
>gi|2983375 (AE000709) UDP-MURNAC-pentapeptide sythetase [Aquifex
aeolicus]
Length = 445
Score = 52.3 bits (123), Expect = 9e-06
Identities = 76/342 (22%), Positives = 131/342 (38%), Gaps = 48/342 (14%)
Query: 4 SMPLAQLLP-DIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 62
S LA++L + + ++ + +DSR ++ G+ FI DA +GAV
Sbjct: 5 SQTLAKILKGSLVGSPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGAVG 64
Query: 63 ILFEPPAPQGVSVPDGAIAV------HGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKT 116
++ E + V VP G + LR + F G ++GV G+ GKT
Sbjct: 65 VISE----REVDVPPGKFLIKVRSTLESLREIAKFKRENFKGK------VIGVAGSAGKT 114
Query: 117 STVQLLAQAWHCLGVRSATCGTLG--VGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQA 174
+T +LL+ G + G L VGL V T + H GA
Sbjct: 115 TTKELLSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEH---------GA-- 163
Query: 175 VAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVI 234
S + ++ V + T L +HL+ G +E A +F
Sbjct: 164 -----SKRGEIKNLIEITKPHVRLITTLGEEHLEGFGSLEGVIWGNAEMFCR-------- 210
Query: 235 NVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRS 294
+ D F + + + + ++ AQ++ ++ +G+ F+ + + +
Sbjct: 211 -ISDNFYAVIPGKFLDTLFFLPKKISFGERGELQAQNVEVSEKGVSFE--VEGEKFFISV 267
Query: 295 PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRM 336
P +G V+N+LA VL L + L E L P+ GRM
Sbjct: 268 PSLGL--VENILACFCVLKVLGFTLKEFKEALKEFSPVEGRM 307
>gi|39993|emb|CAA45555| (X64258)
UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Bacillus subtilis] >gi|383709|prf||1904153A murD gene
[Bacillus subtilis]
Length = 369
Score = 51.9 bits (122), Expect = 1e-05
Identities = 56/244 (22%), Positives = 99/244 (39%), Gaps = 39/244 (15%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
+G+TG+NGKT+T L+ + ++ G +G T + H
Sbjct: 34 IGITGSNGKTTTTTLIYEMLKADSQKALIAGNIG------------TVASEVAYHA---- 77
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHY---DVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
+G + + E+SS L G H ++ + N+ HLDYH E+Y AK ++
Sbjct: 78 ---DGDEWIVTELSSFQLM-----GTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 129
Query: 224 FAHQDV-QAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGI-GF 281
+ HQ A++N DD +RL + VS A V + N + I
Sbjct: 130 YLHQTASDKAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAILPL 189
Query: 282 DLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGG 341
+ V+ L G N++N+LA V+ + + VL++ + R+ +
Sbjct: 190 EEVV----------LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT 239
Query: 342 QDGQ 345
+G+
Sbjct: 240 VNGR 243
>gi|3024202|sp|P96613|MURF_BACSU
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME)
>gi|1881267|dbj|BAA19294| (AB001488) PROBABLE
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2, 6-DIAMINOLIGASE
(EC 6.3.2.15). [Bacillus subtilis]
>gi|2632757|emb|CAB12264| (Z99106)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
subtilis]
Length = 457
Score = 51.9 bits (122), Expect = 1e-05
Identities = 91/404 (22%), Positives = 150/404 (36%), Gaps = 48/404 (11%)
Query: 15 PQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS 74
PQ VI G+ D+R+++ G F+E A G A+L++ P
Sbjct: 20 PQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGVAAVLWDRSVPN--- 76
Query: 75 VPDGAIAVHGLRARLGAMADRFHGHPSQAMT-MVGVTGTNGKTSTVQLLAQAWHCLGVRS 133
P AV + L A+ + + T ++GVTG+NGKT+T ++ H +
Sbjct: 77 -PPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMI----HAV---- 127
Query: 134 ATCGTLGVGLYDQVVPTG--FTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDG 191
+G +V TG F + L L E + +E+ A +G +D
Sbjct: 128 -------LGTQYRVHKTGGNFNNHIGLPL---TVLAMPENTEIAVLEMGMSA--KGEIDL 175
Query: 192 V----HYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHG 247
+ + D V TN+ H+ G E AK + +I + D L+ +
Sbjct: 176 LSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQNAYS 235
Query: 248 LAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLA 307
G T D Q +S + +G F I + P++G+ NV N +A
Sbjct: 236 CQTKTYGTG------THNDYQLQDVSQSEEGTHF--TIKGIENTFFIPILGKHNVMNAMA 287
Query: 308 VAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALG---QVLS 364
A + A LS L+ R+ + G Y +P ++ Q+
Sbjct: 288 AIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTE 347
Query: 365 SLSSHVCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVF 404
SL + G+ + V G G + + AVI+ D VF
Sbjct: 348 SLEGY--GKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVF 389
>gi|3122408|sp|O31211|MURC_STAAU UDP-N-ACETYLMURAMATE--ALANINE
LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE)
>gi|2642659|gb|AAB87090.1| (AF034076)
UDP-N-acetylmuramoyl-L-alanine synthetase
[Staphylococcus aureus]
Length = 437
Score = 51.5 bits (121), Expect = 2e-05
Identities = 70/272 (25%), Positives = 100/272 (36%), Gaps = 40/272 (14%)
Query: 96 FHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTP 155
F G T V VTG +GKTST LL+ H + T +G G TG P
Sbjct: 93 FLGQIIDQYTSVAVTGAHGKTSTTGLLS---HVMNGDKKTSFLIGDG-------TGMGLP 142
Query: 156 LVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEH 215
+ A E H L D + TN+ DH DY D+
Sbjct: 143 ------------ESDYFAFEACEYRRHFLSYKP------DYAIMTNIDFDHPDYFKDIND 184
Query: 216 YGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDAD-VMAQHLSL 274
A + AH +V+ +I D LR + V + G D+D + AQ++ +
Sbjct: 185 VFDAFQEM-AH-NVKKGIIAWGDDEHLRKIEA------DVPIYYYGFKDSDDIYAQNIQI 236
Query: 275 NLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIH 333
+G FD+ + G + SP G V N LAV + Y ++ I L T +
Sbjct: 237 TDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVK 296
Query: 334 GRMNRLGGQDGQPXXXXDYAHTPDALGQVLSS 365
R N DYAH P + + +
Sbjct: 297 RRFNET--TIANQVIVDDYAHHPREISATIET 326
>gi|2983764 (AE000736) UDP-N-acetylmuramate-alanine ligase [Aquifex
aeolicus]
Length = 454
Score = 51.5 bits (121), Expect = 2e-05
Identities = 86/367 (23%), Positives = 141/367 (37%), Gaps = 50/367 (13%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
+ V+G++GKT+T ++A+ + GL V+ G +
Sbjct: 109 IAVSGSHGKTTTTSMIAEI------------LINAGLEPTVIIGG--------------R 142
Query: 167 LRDEGAQAVA----MEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKAR 222
L+ G A + VS G + V V TN+ ++HLD++ + E A +
Sbjct: 143 LKRLGTNAKLGRGELLVSEADESDGSFLKLQPAVAVITNVDKEHLDFYENFERVKEAFEQ 202
Query: 223 LFAHQDVQA-AVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGF 281
AV+N+DDP +L+ + + G+ ++ A V A++L L F
Sbjct: 203 FMNSVPFYGFAVVNLDDPTLAQLVKKSHERVITYGI----NSPALVRAKNLYLKEGRYEF 258
Query: 282 DLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLG 340
+ G + + + G NV N LA GV L + I L R R+ G
Sbjct: 259 GVEFKGKELGRIHLGIAGIHNVYNALAATGVALELGVSFEVIKKSLEEFRNAERRLELKG 318
Query: 341 GQDGQPXXXXDYAHTPDALGQVLSSL-SSHVCGRLICVFGCGGERDRGKRS----QMAVI 395
P DY H P + V++SL + L+ VF + R R+ + V
Sbjct: 319 YYKNSP-VYDDYGHHPTEIKAVINSLRDMYPDKNLLVVF----QPHRYSRTYYLFEDFVK 373
Query: 396 AESNADVVFVTDDNPRGEDG-DGIVADILAGFARPNVVKVQRDRXXXXXXXXXXXXXEDV 454
+ D + VTD P E+ G+ A+ L AR + +D+ DV
Sbjct: 374 VLKDIDKLIVTDIYPASENNVYGVSAEEL---ARKSGAVFAKDKEEVFEKVREVHDEGDV 430
Query: 455 VLIAGKG 461
+L G G
Sbjct: 431 ILFLGAG 437
>gi|4009480 (AF068902) D-glutamic acid adding enzyme MurD
[Streptococcus pneumoniae]
Length = 450
Score = 50.0 bits (117), Expect = 4e-05
Identities = 34/115 (29%), Positives = 51/115 (43%), Gaps = 21/115 (18%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
++G+TG+NGKT+T ++ + G G +G +A
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQ------------------VA 155
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 220
Q+ + + ME+SS L V H ++ V TNL H+DYHG E Y AAK
Sbjct: 156 QIATD-KNTLVMELSSFQLMG--VQEFHPEIAVITNLMPTHIDYHGLFEEYVAAK 207
>gi|3122404|sp|O06225|MURC_MYCTU UDP-N-ACETYLMURAMATE--ALANINE
LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE)
>gi|2104326|emb|CAB08641| (Z95388) murC [Mycobacterium
tuberculosis]
Length = 494
Score = 50.0 bits (117), Expect = 4e-05
Identities = 81/303 (26%), Positives = 121/303 (39%), Gaps = 67/303 (22%)
Query: 105 TMVGVTGTNGKTSTVQLLAQAW-HC-LGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQ 162
T + VTGT+GKT+T +L A HC L A G LG + +G
Sbjct: 116 TTLMVTGTHGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHGSG----------D 165
Query: 163 CLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKAR 222
C DE ++ ++ + H V V TN+ DHLD++G +E Y A
Sbjct: 166 CFVAEADESDGSL-LQYTPH-------------VAVITNIESDHLDFYGSVEAY-VAVFD 210
Query: 223 LFAHQDVQ--AAVINVDDPFGLRLLHGLAKGMRRVGVSVC--GHTDADVMAQHL-SLNLQ 277
F + V A V+ DDP G LA+ +G+ V G + MA L S Q
Sbjct: 211 SFVERIVPGGALVVCTDDPGGA----ALAQRATELGIRVLRYGSVPGETMAATLVSWQQQ 266
Query: 278 GIG--FDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGR 335
G+G + + ++ A+ + P + R L+V G ALN AL + A + P
Sbjct: 267 GVGAVAHIRLASELATAQGPRVMR------LSVPGRHMALN-ALGALLAAVQIGAPADEV 319
Query: 336 MNRLGGQDG----------------QPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFG 379
++ L G +G DYAH P + L++ R++ G
Sbjct: 320 LDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTEISATLAA------ARMVLEQG 373
Query: 380 CGG 382
GG
Sbjct: 374 DGG 376
>gi|3080477|emb|CAA18672.1| (AL022602)
udp-n-acetylmuramoylalanyl-d-glutamyl
-2,6-diaminopimelate--d-alanyl-d-alanyl ligase
[Mycobacterium leprae]
Length = 517
Score = 49.6 bits (116), Expect = 6e-05
Identities = 92/378 (24%), Positives = 132/378 (34%), Gaps = 48/378 (12%)
Query: 21 VISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPA--PQGVSVPDG 78
V + DSR V PG G A A GAVA+L P P V PD
Sbjct: 30 VTGSVEFDSRAVGPGGLFLALPGARSDGHDHAASAIAAGAVAVLAARPVGVPAIVVAPDP 89
Query: 79 AIAVHGLR------------ARLGAMADRFHGHPSQ----AMTMVGVTGTNGKTSTVQLL 122
GL A L A+A ++ +T++G+TG++GKTST L+
Sbjct: 90 RTGDGGLTGVLEHDADGSGAAVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLV 149
Query: 123 AQAWHCLGVRSATCGTLGVGL---YDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 179
A LG A + L + + T T L+L++ R G A +
Sbjct: 150 AVVLELLGEVVAPPESFNNELGHPWTVLRATRSTDYLILEM-----SARRPGNIAALAAI 204
Query: 180 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL-FAHQDVQAAVINVDD 238
+ + V N+ HL G E K L A ++NVDD
Sbjct: 205 APPKIG------------VVLNVGTAHLGEFGSREAIARTKTELPQAIMQSGVVILNVDD 252
Query: 239 PFGLRLLHGLAKGMRRVGVSVCGH----TDADVMAQHLSLN-LQGIGFDLVI---GADHA 290
P + + RV H DV +SL+ L F L A
Sbjct: 253 PAVAAMADATVARVIRVSRGSYSHPGSPNSPDVWTGPVSLDELARPRFTLHTRDPRAGAT 312
Query: 291 SVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI-HGRMNRLGGQDGQPXXX 349
++ + G V N L A V ++ E+A L+ P+ RM DG
Sbjct: 313 EIQLGVYGDHQVANALCAAAVGLECGASVEEVAVALAATGPVSRHRMQVTTRADGVTVID 372
Query: 350 XDYAHTPDALGQVLSSLS 367
Y PD++ L +L+
Sbjct: 373 DTYNANPDSMRAGLQALA 390
>gi|4377221|gb|AAD19039| (AE001670) Muramoylalanine-Glutamate Ligase
[Chlamydia pneumoniae]
Length = 417
Score = 49.2 bits (115), Expect = 8e-05
Identities = 32/116 (27%), Positives = 50/116 (42%), Gaps = 22/116 (18%)
Query: 108 GVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQL 167
G+TG+NGKT+T L + LG+ + G +G+ + D + G
Sbjct: 105 GITGSNGKTTTTLFLTHLLNTLGIPAIAMGNIGLPILDHMGQPGVR-------------- 150
Query: 168 RDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
+E+SS L VF N +R+HLDYH +++ Y AK R+
Sbjct: 151 --------VVEISSFQLATQEEHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI 198
>gi|1171075|sp|P45450|MURF_SYNY3
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME)
>gi|1084179|pir||S49610
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase (EC
6.3.2.15) - Synechocystis sp. (PCC 6803)
>gi|575416|emb|CAA44303| (X62437)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Synechocystis sp.]
Length = 454
Score = 48.4 bits (113), Expect = 1e-04
Identities = 83/358 (23%), Positives = 131/358 (36%), Gaps = 49/358 (13%)
Query: 17 ARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS-- 74
+ D+ I+ + D+R + GD G FI A GA+A++ + P +G+
Sbjct: 25 SEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDRPV-EGLGET 83
Query: 75 -----VPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCL 129
V D +A + A RF + ++GVTG+ GKT+T +L+A
Sbjct: 84 VAQFLVEDTLVAYQHIAA---GWRQRF------TIPIIGVTGSVGKTTTKELIAAVLSQF 134
Query: 130 GVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRV 189
G T Y+ + T +L+L D V M +
Sbjct: 135 GNVHKTRAN-----YNNEIGVPKT---LLELSP------DHDFAIVEMAMRGRGQIALLA 180
Query: 190 DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGL 248
D + + TN+ H+ G AK L AHQ ++ A++N D+ +
Sbjct: 181 DIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNALLMETAQRF 240
Query: 249 AKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAV 308
+G G V ++L L D S+ PL G N N LA
Sbjct: 241 WQGKTITYGLEGGDVHGTVDGENLIL-------------DGVSLPLPLAGVHNASNYLAA 287
Query: 309 AGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSL 366
+ L ++ + L+ P GR R Q GQ D + D L +L+SL
Sbjct: 288 IALAQCLGLDWQQLQSGLTVELP-KGRARRY--QWGQDVVLLDETYN-DGLESMLASL 341
>gi|4980734|gb|AAD35327.1|AE001707_14 (AE001707)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
maritima]
Length = 426
Score = 48.4 bits (113), Expect = 1e-04
Identities = 59/223 (26%), Positives = 90/223 (39%), Gaps = 21/223 (9%)
Query: 18 RDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPD 77
+D++ V++S+EV+ GD G FI++A GA AI+ E D
Sbjct: 2 KDLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNS----D 57
Query: 78 GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCG 137
V L +A G+ S T+VGVTG++GKT+T ++L ++ L + +
Sbjct: 58 RIFLVESSVDTLAKLAREKLGNFSG--TVVGVTGSSGKTTTKEIL---YNLLKNKRSVFK 112
Query: 138 TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVV 197
T G + T + PL + L + E + M S DV
Sbjct: 113 TPG------NMNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVA 161
Query: 198 VFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDP 239
V N+ HL++ G E K + H A AV DDP
Sbjct: 162 VLLNVGSAHLEFFGTRERIMETKMEIIKHSKENAIAVTLFDDP 204
>gi|1653256|dbj|BAA18171| (D90912)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Synechocystis sp.]
Length = 454
Score = 46.9 bits (109), Expect = 4e-04
Identities = 78/336 (23%), Positives = 122/336 (36%), Gaps = 47/336 (13%)
Query: 17 ARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVS-- 74
+ D+ I+ + D+R + GD G FI A GA+A++ + P +G+
Sbjct: 25 SEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDRPV-EGLGET 83
Query: 75 -----VPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCL 129
V D +A + A RF + ++GVTG+ GKT+T +L+A
Sbjct: 84 VAQFLVEDTLVAYQHIAA---GWRQRF------TIPIIGVTGSVGKTTTKELIAAVLSQF 134
Query: 130 GVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRV 189
G T Y+ + T +L+L D V M +
Sbjct: 135 GNVHKTRAN-----YNNEIGVPKT---LLELSP------DHDFAIVEMAMRGRGQIALLA 180
Query: 190 DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA-AVINVDDPFGLRLLHGL 248
D + + TN+ H+ G AK L AHQ ++ A++N D+ +
Sbjct: 181 DIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNALLMETAQRF 240
Query: 249 AKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAV 308
+G G V ++L L D S+ PL G N N LA
Sbjct: 241 WQGKTITYGLEGGDVHGTVDGENLIL-------------DGVSLPLPLAGVHNASNYLAA 287
Query: 309 AGVLYALNYALSEIAAVLSTLRPIHGRMNRL-GGQD 343
V L ++ + L+ P GR R GQD
Sbjct: 288 IAVAQCLGLDWQQLQSGLTVELP-KGRARRYQWGQD 322
>gi|6093451|sp|O83401|MURF_TREPA
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,
6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE
(UDP-MURNAC-PENTAPEPTIDE SYNTHETASE)
(D-ALANYL-D-ALANINE-ADDING ENZYME) >gi|3322664
(AE001217)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
[Treponema pallidum]
Length = 459
Score = 46.5 bits (108), Expect = 5e-04
Identities = 76/322 (23%), Positives = 118/322 (36%), Gaps = 37/322 (11%)
Query: 24 GLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQG-------VSVP 76
G+ DSR V P D G F+E+A +GAVA L + P
Sbjct: 28 GVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQKGAVATLIDQRYPHAGEYVAWCTRFG 87
Query: 77 DGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATC 136
IAVH L +A F+ A+ +G+TG++GKT TV+ +A+A R
Sbjct: 88 AACIAVHDTLRALQDLAS-FYCKKFPALIRIGITGSSGKT-TVKEMARAVFSERYR---- 141
Query: 137 GTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDE---GAQAVAMEVSSHALDQGRVDGVH 193
VV T + L Q L +R E G + M ++ H
Sbjct: 142 ----------VVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGEMRTLAQILVPH 191
Query: 194 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMR 253
Y ++ TN+ H+ G + K +F+ + DD + + L + G
Sbjct: 192 YAII--TNVGCAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVPDDAYRV-FLSNIPYGR- 247
Query: 254 RVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLY 313
V V + + + L+G + +R PL G N N LAV +
Sbjct: 248 ---VVVYDQGGRGLATEVIDEGLRGSR----VLYQGRWIRVPLPGVHNAKNALAVIALAA 300
Query: 314 ALNYALSEIAAVLSTLRPIHGR 335
+ EI + ++P GR
Sbjct: 301 QVGLPAEEIQRGMERVKPPFGR 322
>gi|3122405|sp|O07108|MURD_ENTFA
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|2149905 (U94707)
D-glutamic acid adding enzyme [Enterococcus faecalis]
Length = 456
Score = 46.5 bits (108), Expect = 5e-04
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
+VG+TGTNGKT+T ++ + R+A L + GF V Q A
Sbjct: 114 IVGITGTNGKTTTTTMIGLLLNA--DRTAGEARLAGNI-------GFPASTVAQE----A 160
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAK 220
+D+ + ME+SS L ++ H + V TN+ HLDYHG + Y AAK
Sbjct: 161 TAKDD----LVMELSSFQLMG--IETFHPQIAVITNIFEAHLDYHGSRKEYVAAK 209
>gi|5834374|gb|AAD53940.1|AF179611_24 (AF179611)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
mobilis]
Length = 463
Score = 46.1 bits (107), Expect = 7e-04
Identities = 78/324 (24%), Positives = 122/324 (37%), Gaps = 27/324 (8%)
Query: 19 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAP-QGVSVPD 77
D + + DSRE+Q GD G ++E A RGA + P P + V D
Sbjct: 21 DFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAAFKRGAAGAVVMSPVPYPHILVDD 80
Query: 78 GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCG 137
A+ L A+A R H ++G+TG+ GKTST + L A +
Sbjct: 81 SYQALKDL-----AVASRKRNHGK----IIGITGSVGKTSTKESLRLALERMAPEKV--- 128
Query: 138 TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDG-VHYDV 196
+ Y+ V PL LA++ +E + +HA + + V DV
Sbjct: 129 HYSLKSYNNHV----GVPL------SLARMPEESLFGIFEMGMNHAGELSDLTKLVQPDV 178
Query: 197 VVFTNLTRDHLDYHGDMEHYGAAKARLF-AHQDVQAAVINVDDPFGLRLLHGLAKGMRRV 255
+ T + H + D AK+ +F A+I D P+ LL A+ +
Sbjct: 179 ALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPY-RDLLTAKAQEKKAE 237
Query: 256 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFN-VDNLLAVAGVLYA 314
S A + AQ++ G D V S M + + N +AV V+ A
Sbjct: 238 IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMAVLAVVDA 297
Query: 315 LNYALSEIAAVLSTLRPIHGRMNR 338
+ L+ + L + GR R
Sbjct: 298 VGGDLTLASLALGDITGFQGRGQR 321
>gi|127537|sp|P14900|MURD_ECOLI
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|68625|pir||CEECME
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC
6.3.2.9) - Escherichia coli >gi|40856|emb|CAA38865.1|
(X55034) UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438)
[Escherichia coli] >gi|42060|emb|CAA35933| (X51584) murD
gene product (AA 1-438) [Escherichia coli]
>gi|216502|dbj|BAA01353| (D10483)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Escherichia coli] >gi|1786276 (AE000118)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Escherichia coli]
Length = 438
Score = 45.7 bits (106), Expect = 9e-04
Identities = 63/280 (22%), Positives = 112/280 (39%), Gaps = 39/280 (13%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
+V +TG+NGK++ L+ + GV G +G+ P ++
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL-------------PALM------- 146
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD-YHGDMEHYGAAKARLF 224
L D+ + +E+SS L+ + N+T DH+D Y ++ Y AAK R++
Sbjct: 147 -LLDDECELYVLELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 203
Query: 225 AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 284
++ + V+N DD + + G + GV++ + HL+ + QG + V
Sbjct: 204 --ENAKVCVVNADDALTMP-IRGADERCVSFGVNMGDY--------HLN-HQQGETWLRV 251
Query: 285 IGADHASVRS-PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQD 343
G +V+ L G+ N N LA + A + L+T + R + +
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHN 311
Query: 344 GQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGE 383
G A + L+ L HV G L + G G+
Sbjct: 312 GVRWINDSKATNVGSTEAALNGL--HVDGTLHLLLGGDGK 349
>gi|4377219|gb|AAD19037| (AE001670) Muramoyl-DAP Ligase [Chlamydia
pneumoniae]
Length = 447
Score = 45.7 bits (106), Expect = 9e-04
Identities = 57/231 (24%), Positives = 91/231 (38%), Gaps = 28/231 (12%)
Query: 19 DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78
D I+G +DS++VQPGD G F++ A GAVA + QG S
Sbjct: 23 DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDY-QGDSFGLE 81
Query: 79 AIAVHGLRARL----GAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSA 134
I V ++ L + F G T+VG+TG+ GKT+T +
Sbjct: 82 LIRVDDTKSALQEAGSNQCNLFQG------TLVGITGSVGKTTTKEF------------- 122
Query: 135 TCGTLGVGLY-DQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVH 193
T+ +Y P + + L + L +A+ DE + M VS Q + V
Sbjct: 123 -SKTILSSIYKTHASPKSYNSQLTVPLSLLMAE-GDEDVMILEMGVSEPGNMQDLLRIVQ 180
Query: 194 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRL 244
++ V T++ H H K + + Q + ++ D P+ L L
Sbjct: 181 PEIAVITHINDQHA-MHFPQGIQEILKEKSYILQKSKLQLLPKDSPYYLDL 230
>gi|42046|emb|CAA35611| (X17609)
UDP-N-acetylmuramoyl-L-alanine:D-gluta ligase (AA 1-438)
[Escherichia coli]
Length = 438
Score = 44.9 bits (104), Expect = 0.002
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
+V +TG+NGK++ L+ + GV G +G+ P ++
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL-------------PALM------- 146
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD-YHGDMEHYGAAKARLF 224
L D+ + +E+SS L+ + N+T DH+D Y ++ Y AAK R++
Sbjct: 147 -LLDDECELYVLELSSFQLE--TTSSLQAVTATILNVTEDHMDRYPFGLQQYRAAKLRIY 203
Query: 225 AHQDVQAAVINVDD 238
++ + V+N DD
Sbjct: 204 --ENAKVCVVNADD 215
>gi|3329220|gb|AAC68353.1| (AE001348)
UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Chlamydia trachomatis]
Length = 416
Score = 43.8 bits (101), Expect = 0.003
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
+ +TGT GKT+T+ L + G+ + G +G+ + D G P V + Q
Sbjct: 104 LAITGTTGKTTTILFLEYLFKRSGIPAFAMGNVGIPILD-----GMQNPGVRIVEISSFQ 158
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
L D+ E S L G + N++ +HLDYHG+ Y AK L
Sbjct: 159 LADQ-------EKSYPVLSGGMI----------LNISDNHLDYHGNFSEYFQAKQNL 198
>gi|6458474|gb|AAF10342.1|AE001931_13 (AE001931)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
radiodurans]
Length = 433
Score = 43.8 bits (101), Expect = 0.003
Identities = 38/123 (30%), Positives = 51/123 (40%), Gaps = 14/123 (11%)
Query: 3 RSMPLAQLLPDIPQARDVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 62
RS+P A + PQAR L DSRE P HG F+E A A GA
Sbjct: 5 RSVPFAAQIH--PQARPA--RRLTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPF 60
Query: 63 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 122
+L + P+ V V D GA+ ++ +VG+TG+ GKT+
Sbjct: 61 VLTDLDVPRAVRVDDAR----------GALFAWARSERAKNPLVVGITGSAGKTTAKSYA 110
Query: 123 AQA 125
A A
Sbjct: 111 AAA 113
>gi|4980729|gb|AAD35322.1|AE001707_9 (AE001707)
UDP-N-acetylmuramate--alanine ligase [Thermotoga
maritima]
Length = 457
Score = 43.4 bits (100), Expect = 0.004
Identities = 60/265 (22%), Positives = 104/265 (38%), Gaps = 48/265 (18%)
Query: 109 VTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTT---PLVLQLHQCLA 165
VTGT+GKT+T ++A L R + LG G+ D + + P+V +L +
Sbjct: 107 VTGTDGKTTTTAMVAHVLKHL--RKSPTVFLG-GIMDSLEHGNYEKGNGPVVYELDE--- 160
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGD-MEHYGAAKARLF 224
++ E S + L + TN DHL+ +G+ + Y +A ++
Sbjct: 161 ------SEEFFSEFSPNYL-------------IITNARGDHLENYGNSLTRYRSAFEKIS 201
Query: 225 AHQDVQAAVINVDDPFGLRL---LHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGF 281
+ D+ V +D L G+ KG + + + M +
Sbjct: 202 RNTDL--VVTFAEDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKN--------- 250
Query: 282 DLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMN-RLG 340
G + ++ + G NV N LAV + +L Y L+ + L R +H R +
Sbjct: 251 ----GKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFH 306
Query: 341 GQDGQPXXXXDYAHTPDALGQVLSS 365
+ DYAHTPD + +L +
Sbjct: 307 DPETNIYVIDDYAHTPDEIRNLLQT 331
>gi|2981818|pdb|1UAG| Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate
Ligase
Length = 437
Score = 43.4 bits (100), Expect = 0.004
Identities = 62/280 (22%), Positives = 111/280 (39%), Gaps = 39/280 (13%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
+V +TG+NGK++ L+ + GV G +G+ P ++
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL-------------PALM------- 145
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLD-YHGDMEHYGAAKARLF 224
L D+ + +E+SS L+ + N+T DH+D Y ++ Y AA R++
Sbjct: 146 -LLDDECELYVLELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIY 202
Query: 225 AHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLV 284
++ + V+N DD + + G + GV++ + HL+ + QG + V
Sbjct: 203 --ENAKVCVVNADDALTMP-IRGADERCVSFGVNMGDY--------HLN-HQQGETWLRV 250
Query: 285 IGADHASVRS-PLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQD 343
G +V+ L G+ N N LA + A + L+T + R + +
Sbjct: 251 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHN 310
Query: 344 GQPXXXXDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGE 383
G A + L+ L HV G L + G G+
Sbjct: 311 GVRWINDSKATNVGSTEAALNGL--HVDGTLHLLLGGDGK 348
>gi|6458326|gb|AAF10205.1|AE001920_8 (AE001920)
UDP-N-acetylmuramate--alanine ligase [Deinococcus
radiodurans]
Length = 482
Score = 43.4 bits (100), Expect = 0.004
Identities = 71/276 (25%), Positives = 101/276 (35%), Gaps = 42/276 (15%)
Query: 85 LRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLY 144
+R R+ + + PS VGV GT+GKT+T ++A A + G+ + V +
Sbjct: 119 VRPRMALLGELLAAGPS-----VGVIGTHGKTTTTSMIAVAMYGAGLDPSAFVGGNVPEF 173
Query: 145 DQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTR 204
TG T P V ++ DE + A+ + + VFTN
Sbjct: 174 GGNARTG-TGPFVAEV--------DESDRGFAL--------------LGCETAVFTNAED 210
Query: 205 DHL-----DYHGDMEHYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSV 259
DH+ Y +E A AR A V+ D GL L A+ G S
Sbjct: 211 DHVGGELATYWSTVEEQHAGFARFVAQ---SGRVLFCADWPGLDTLCSGAREQLTYGQS- 266
Query: 260 CGHTDADVMAQHLSLNLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYA 318
AD A ++ + G FD+ G R L G NV N LA V +
Sbjct: 267 ---AGADYRAVNVRPDESGTTFDVEFRGERLGEARVSLPGTHNVLNGLAALAVTHLYGGD 323
Query: 319 LSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAH 354
A L+ GR + G+ G DYAH
Sbjct: 324 FDRAARALADFHG-PGRRWEIKGERGGALVVDDYAH 358
>gi|2149895 (U94706) D-glutamic acid adding enzyme [Staphylococcus
aureus]
Length = 450
Score = 42.6 bits (98), Expect = 0.008
Identities = 39/168 (23%), Positives = 69/168 (40%), Gaps = 32/168 (19%)
Query: 63 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 122
I+ P P VS+ D A+ + L + + + ++ VTGTNGKT+ L+
Sbjct: 75 IVKNPGIPYTVSIIDEAV-----KRGLKILTEVELSYLISEAPIIAVTGTNGKTTVTSLI 129
Query: 123 AQAW---HCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 179
+ G S G + + +V PT + + E+
Sbjct: 130 GDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY----------------------LVTEL 167
Query: 180 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ 227
SS L ++ + + TN+ HLDYH ++E+Y AK +++ +Q
Sbjct: 168 SSFQL--LGIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQ 213
>gi|3122409|sp|O33595|MURD_STAAU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|2271510 (AF009671)
UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase;
MurD [Staphylococcus aureus]
Length = 449
Score = 42.6 bits (98), Expect = 0.008
Identities = 39/168 (23%), Positives = 69/168 (40%), Gaps = 32/168 (19%)
Query: 63 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 122
I+ P P VS+ D A+ + L + + + ++ VTGTNGKT+ L+
Sbjct: 75 IVKNPGIPYTVSIIDEAV-----KRGLKILTEVELSYLISEAPIIAVTGTNGKTTVTSLI 129
Query: 123 AQAW---HCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 179
+ G S G + + +V PT + + E+
Sbjct: 130 GDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY----------------------LVTEL 167
Query: 180 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ 227
SS L ++ + + TN+ HLDYH ++E+Y AK +++ +Q
Sbjct: 168 SSFQL--LGIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQ 213
>gi|2463563|dbj|BAA22556| (AB007500) MURD [Staphylococcus aureus]
Length = 269
Score = 42.6 bits (98), Expect = 0.008
Identities = 39/168 (23%), Positives = 69/168 (40%), Gaps = 32/168 (19%)
Query: 63 ILFEPPAPQGVSVPDGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLL 122
I+ P P VS+ D A+ + L + + + ++ VTGTNGKT+ L+
Sbjct: 75 IVKNPGIPYTVSIIDEAV-----KRGLKILTEVELSYLISEAPIIAVTGTNGKTTVTSLI 129
Query: 123 AQAW---HCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEV 179
+ G S G + + +V PT + + E+
Sbjct: 130 GDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY----------------------LVTEL 167
Query: 180 SSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQ 227
SS L ++ + + TN+ HLDYH ++E+Y AK +++ +Q
Sbjct: 168 SSFQL--LGIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQ 213
>gi|556014 (L31845) UDP-N-acetyl muramate-alanine ligase [Bacillus
subtilis]
Length = 348
Score = 41.0 bits (94), Expect = 0.022
Identities = 67/264 (25%), Positives = 93/264 (34%), Gaps = 40/264 (15%)
Query: 95 RFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTT 154
+F G + T V VTG +GKTST LLA H + T +G G TG
Sbjct: 8 KFLGDYMKKFTSVAVTGAHGKTSTTGLLA---HVIQNAKPTSFLIGDG-------TG--- 54
Query: 155 PLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDME 214
E A E H L D + TN+ DH DY ++
Sbjct: 55 ---------QGNENSEYFVFEACEYRRHFLSY------QPDYAIMTNIDFDHPDYFSSID 99
Query: 215 HYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCG-HTDADVMAQHLS 273
A + V +I D L +H V V G + D A+++
Sbjct: 100 DVFDAFQEMAL--QVNKGIIACGDDEHLPKIHA------NVPVVYYGTGEENDFQARNIV 151
Query: 274 LNLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI 332
+ +G FD+ + + + P G NV N LAV + + S I L + +
Sbjct: 152 KSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGV 211
Query: 333 HGRMNRLGGQDGQPXXXXDYAHTP 356
R N Q G DYAH P
Sbjct: 212 KRRFNE--KQLGDQVLIDDYAHHP 233
>gi|3183540|sp|P40778|MURC_BACSU UDP-N-ACETYLMURAMATE--ALANINE
LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE)
>gi|2293216 (AF008220) putative
UDP-N-acetylmuramate-alanine ligase [Bacillus subtilis]
>gi|2635463|emb|CAB14957| (Z99119) UDP-N-acetyl
muramate-alanine ligase [Bacillus subtilis]
Length = 432
Score = 41.0 bits (94), Expect = 0.022
Identities = 67/264 (25%), Positives = 93/264 (34%), Gaps = 40/264 (15%)
Query: 95 RFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTT 154
+F G + T V VTG +GKTST LLA H + T +G G TG
Sbjct: 92 KFLGDYMKKFTSVAVTGAHGKTSTTGLLA---HVIQNAKPTSFLIGDG-------TG--- 138
Query: 155 PLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDME 214
E A E H L D + TN+ DH DY ++
Sbjct: 139 ---------QGNENSEYFVFEACEYRRHFLSY------QPDYAIMTNIDFDHPDYFSSID 183
Query: 215 HYGAAKARLFAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCG-HTDADVMAQHLS 273
A + V +I D L +H V V G + D A+++
Sbjct: 184 DVFDAFQEMAL--QVNKGIIACGDDEHLPKIHA------NVPVVYYGTGEENDFQARNIV 235
Query: 274 LNLQGIGFDLVI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPI 332
+ +G FD+ + + + P G NV N LAV + + S I L + +
Sbjct: 236 KSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGV 295
Query: 333 HGRMNRLGGQDGQPXXXXDYAHTP 356
R N Q G DYAH P
Sbjct: 296 KRRFNE--KQLGDQVLIDDYAHHP 317
>gi|4406514|gb|AAD20011| (AF123319)
UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase MurE [Streptomyces coelicolor]
Length = 142
Score = 40.6 bits (93), Expect = 0.029
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 6 PLAQLLPDIPQAR---DVVISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVA 62
PLA+L + A I+G+ DSR V+PGD HG F+ A GA A
Sbjct: 61 PLAELADQLGVAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 120
Query: 63 ILFEP 67
+L +P
Sbjct: 121 VLTDP 125
>gi|3868935|dbj|BAA34293| (AB015023) MurC [Corynebacterium
glutamicum]
Length = 486
Score = 39.5 bits (90), Expect = 0.066
Identities = 78/307 (25%), Positives = 113/307 (36%), Gaps = 58/307 (18%)
Query: 98 GHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLV 157
G + T V + GT+GKTST + A G+ + +G
Sbjct: 113 GELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPS----FAIG--------------- 153
Query: 158 LQLHQCLAQLRDEGAQAV--AMEVSSHALDQGRVDGVHY--DVVVFTNLTRDHLDYHGDM 213
QL G A EV D+ + Y +V V TN+ DHLD+
Sbjct: 154 -------GQLNKAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFFKTP 206
Query: 214 EHYGAA----KARLFAHQDVQAAVINVDDPFGLRL-LHGLAKGMRRVGV----SVCGHTD 264
E Y R+ + + V+ ++DP L + KG++ VG +V H +
Sbjct: 207 EAYFQVFDDFAGRITPNGKL---VVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263
Query: 265 ADVMAQHLSLNLQGIGFDLVIGAD--HASVRSPLMGRFNVDN----LLA---VAGVLYAL 315
MA + + G I D SV + G V N LLA V G + L
Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323
Query: 316 NYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHV----C 371
LS+ + V HG + GG+ DYAH P + VLS+ + V
Sbjct: 324 VEGLSDFSGVRRRFE-FHGAIE--GGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380
Query: 372 GRLICVF 378
GR+I F
Sbjct: 381 GRVIVAF 387
>gi|3329218|gb|AAC68351.1| (AE001348)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase
[Chlamydia trachomatis]
Length = 450
Score = 38.3 bits (87), Expect = 0.15
Identities = 30/101 (29%), Positives = 47/101 (45%), Gaps = 11/101 (10%)
Query: 22 ISGLVMDSREVQPGDXXXXXXXXXXHGLCFIEDACARGAVAIL----FEPPAPQGVSVPD 77
++G+ +DSR V PGD G F++ A GAVA + + P+ G+ +
Sbjct: 25 VTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPS-YGLQLLR 83
Query: 78 GAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTST 118
A LRA F+G ++G+TG+ GKT+T
Sbjct: 84 VADPREALRAAGRTQGALFYGE------VIGITGSVGKTTT 118
>gi|3123061|sp|O26631|Y531_METTH HYPOTHETICAL PROTEIN MTH531
>gi|2621605 (AE000836) UDP-N-acetylmuramyl tripeptide
synthetase related protein [Methanobacterium
thermoautotrophicum]
Length = 312
Score = 37.9 bits (86), Expect = 0.19
Identities = 52/200 (26%), Positives = 76/200 (38%), Gaps = 37/200 (18%)
Query: 60 AVAILFEPPAPQGVSVP----DGAIAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGK 115
A A+ P PQ V + VH + +G + G P MVGV GT+GK
Sbjct: 72 ADAVFISPNIPQDAPVRKMVREAGDLVHITTSDIGRTLNELIGLP-----MVGVAGTDGK 126
Query: 116 TSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAV 175
T+T ++ H L R T L D +V G +V
Sbjct: 127 TTTTNMID---HILSSRYRTVSF--SSLQDSLVIEGLVELVV-------------NGDID 168
Query: 176 AMEVSSHALDQGRV---DGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQA- 231
+++ L G + +G+ V TNLT DH+D + +Y R F+ +D+ A
Sbjct: 169 DRDLAVFELPHGTIRMAEGLELSAGVVTNLTPDHMD---EFSNYDEYIERNFSIKDLMAP 225
Query: 232 ---AVINVDDPFGLRLLHGL 248
+ DDP LL L
Sbjct: 226 GGVLALCGDDPVISSLLDDL 245
>gi|3914074|sp|O51532|MURD_BORBU
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
(UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE)
(D-GLUTAMIC ACID ADDING ENZYME) >gi|2688512 (AE001160)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
[Borrelia burgdorferi]
Length = 451
Score = 37.9 bits (86), Expect = 0.19
Identities = 33/129 (25%), Positives = 56/129 (42%), Gaps = 21/129 (16%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
+V VTGT GK++ V LL QA G +GV P F L
Sbjct: 113 IVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS------PLSFFDQL--------- 157
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFA 225
+G + +E+SS L ++ + + + TN+ DH +Y+ + + Y K+++F
Sbjct: 158 ----DGKSPLILELSSWQLQS--LENFNPIISIITNVYNDHQNYYLNFDDYIIDKSKIFV 211
Query: 226 HQDVQAAVI 234
+Q +I
Sbjct: 212 NQTSGIVII 220
>gi|6723459|emb|CAB66325.1| (AJ242646) MurC protein [Brevibacterium
lactofermentum]
Length = 486
Score = 37.5 bits (85), Expect = 0.25
Identities = 77/307 (25%), Positives = 112/307 (36%), Gaps = 58/307 (18%)
Query: 98 GHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLV 157
G + T V + GT+GKTST + A G+ + +G
Sbjct: 113 GELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPS----FAIG--------------- 153
Query: 158 LQLHQCLAQLRDEGAQAV--AMEVSSHALDQGRVDGVHY--DVVVFTNLTRDHLDYHGDM 213
QL G A EV D+ + Y +V V TN+ DHLD+
Sbjct: 154 -------GQLNKAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFFKTP 206
Query: 214 EHYGAA----KARLFAHQDVQAAVINVDDPFGLRL-LHGLAKGMRRVGV----SVCGHTD 264
E Y R+ + + V+ ++DP L + KG++ VG +V H +
Sbjct: 207 EAYFQVFDDFAGRITPNGKL---VVCLNDPHAAELGERSVRKGIKTVGYGTRDAVQAHPE 263
Query: 265 ADVMAQHLSLNLQGIGFDLVIGAD--HASVRSPLMGRFNVDN----LLA---VAGVLYAL 315
MA + + G I D SV + G V N LLA V G + L
Sbjct: 264 VPAMATVVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323
Query: 316 NYALSEIAAVLSTLRPIHGRMNRLGGQDGQPXXXXDYAHTPDALGQVLSSLSSHV----C 371
LS+ + V HG + GG+ DYAH P + VL ++ V
Sbjct: 324 VEGLSDFSGVRRRFE-FHGAIE--GGKFNGAAIYDDYAHHPTEVTAVLRRCATRVKAAGK 380
Query: 372 GRLICVF 378
GR+I F
Sbjct: 381 GRVIVAF 387
>gi|2960136|emb|CAA18034.1| (AL022121) hypothetical protein Rv3712
[Mycobacterium tuberculosis]
Length = 413
Score = 37.5 bits (85), Expect = 0.25
Identities = 44/133 (33%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 107 VGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQ 166
V VTGTNGK++T ++ A A GTLG V + L LA
Sbjct: 54 VVVTGTNGKSTTTRMTA----------AALGTLGA-----VATNAEGANMDAGLVAALAA 98
Query: 167 LRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHY-GAAKARLFA 225
RD A+ +EV + D V VVV NL+RD LD G++ +A L
Sbjct: 99 HRD--AELAVLEVDEMHVPH-ISDAVDPAVVVLLNLSRDQLDRVGEINVIERTLRAGLAR 155
Query: 226 HQDVQAAVINVDD 238
H D V N DD
Sbjct: 156 HPDA-VVVANCDD 167
>gi|4154982 (AE001479) UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE
LIGASE [Helicobacter pylori J99]
Length = 422
Score = 37.1 bits (84), Expect = 0.33
Identities = 29/119 (24%), Positives = 56/119 (46%), Gaps = 25/119 (21%)
Query: 105 TMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCL 164
TM+ ++GTNGKT+T ++L ++ + G +G TPL+
Sbjct: 96 TMISISGTNGKTTTTEMLTTLLE--DFKAVSGGNIG-------------TPLI------- 133
Query: 165 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
+L ++ + +E SS +L + + + + N+ DHL +H + E+Y AK ++
Sbjct: 134 -ELFEKRSPLWVLETSSFSLHY--TNKAYPLIYLLINVEADHLTWHCNFENYLNAKLKV 189
>gi|2984290 (AE000771) UDP-N-acetylmuramoylalanine-D-glutamate
ligase [Aquifex aeolicus]
Length = 415
Score = 36.7 bits (83), Expect = 0.44
Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 43/262 (16%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
++ +TGT+GK++T +L + +D+V G + + +
Sbjct: 86 VIAITGTDGKSTTTRLTY--------------LILKKFFDEVFEAG-------NIGKPFS 124
Query: 166 QLRDEGAQAVA-MEVSSHALDQGR-VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
++ E + +A +EVSS QG+ + ++ F + + DHLD+H +E Y +K R+
Sbjct: 125 EVVLENPEGIAVLEVSSF---QGKTLKTFRPNIGAFISFSVDHLDWHPSIEDYLKSKYRI 181
Query: 224 FAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDL 283
F +Q + +I D L++ + K R V+ L +N + +
Sbjct: 182 FENQTEEDFLILND------LVYEIKKTPSRA---------RKVLFSELYINSDSVFYKD 226
Query: 284 VIGADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQD 343
+ + +++ + G NV N + + L + V+ R + R+ LG +
Sbjct: 227 IRLFNPKNLK--IRGLHNVYNASVASLIALTLGLKPEDFEEVIYEFRGLPHRLEFLGNFN 284
Query: 344 GQPXXXXDYAHTPDALGQVLSS 365
G + TP AL L +
Sbjct: 285 GVEVYNDSKSTTPHALMHALKT 306
>gi|2313605|gb|AAD07560.1| (AE000564)
UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD)
[Helicobacter pylori 26695]
Length = 422
Score = 36.4 bits (82), Expect = 0.57
Identities = 28/119 (23%), Positives = 56/119 (46%), Gaps = 25/119 (21%)
Query: 105 TMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCL 164
T++ ++GTNGKT+T ++L ++ + G +G TPL+
Sbjct: 96 TIISISGTNGKTTTTEMLTMLLE--DFKAVSGGNIG-------------TPLI------- 133
Query: 165 AQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
+L ++ + +E SS +L + + + + N+ DHL +H + E+Y AK ++
Sbjct: 134 -ELFEKRSPLWVLETSSFSLHY--TNKAYPLIYLLINIEADHLTWHCNFENYLNAKLKV 189
>gi|3150111|emb|CAA19164.1| (AL023596) hypothetical protein
MLCB2407.24c [Mycobacterium leprae]
Length = 411
Score = 33.6 bits (75), Expect = 3.8
Identities = 34/130 (26%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 109 VTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLR 168
VTGTNGK++T ++ A L S G + G L LA L
Sbjct: 56 VTGTNGKSTTTRMTVDALSTLAPGSVATNAEGANM-----DAGLVAALAANRAATLAVL- 109
Query: 169 DEGAQAVAMEVSSHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQD 228
+ M V A D + +VV NL+RD LD G++ A
Sbjct: 110 ----EVDEMHVPRVA------DALTPHIVVLLNLSRDQLDRVGEINVIERTLRTGLARHP 159
Query: 229 VQAAVINVDD 238
+ N DD
Sbjct: 160 TAVVIANCDD 169
>gi|3219995|sp|P37773|MPL_ECOLI
UDP-N-ACETYLMURAMATE:L-ALANYL-GAMMA-D-GLUTAMYL-MESO-
DIAMINOPIMELATE LIGASE >gi|1361182|pir||S56459
hypothetical protein o457 - Escherichia coli >gi|537075
(U14003) ORF_o457 [Escherichia coli] >gi|1790680
(AE000494) putative ligase [Escherichia coli]
Length = 457
Score = 32.8 bits (73), Expect = 6.5
Identities = 59/277 (21%), Positives = 99/277 (35%), Gaps = 29/277 (10%)
Query: 106 MVGVTGTNGKTSTVQLLAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLA 165
++ V GT+GKT+T + G + G VP F + A
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEQCGYKP--------GFVIGGVPGNF---------EVSA 147
Query: 166 QLRDEGAQAVAMEVSSHALDQGRVDGVHY--DVVVFTNLTRDHLDYHGDMEHYGAAKARL 223
L + + + A R VHY ++ NL DH D D++ L
Sbjct: 148 HLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207
Query: 224 FAHQDVQAAVINVDDPFGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDL 283
Q +I ++ L+ + + V GH A + S +++
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDAS------EWEV 261
Query: 284 VI-GADHASVRSPLMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQ 342
++ G V+ L+G N+ N L + A ++ A L + R+ G
Sbjct: 262 LLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRGEA 321
Query: 343 DGQPXXXXDYAHTPDALGQVLSSLSSHVCG--RLICV 377
+G D+AH P A+ L++L V G R+I V
Sbjct: 322 NGV-TVYDDFAHHPTAILATLAALRGKVGGTARIIAV 357
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123864514
Number of Sequences: 449381
Number of extensions: 4857997
Number of successful extensions: 10234
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 10012
Number of HSP's gapped (non-prelim): 119
length of query: 495
length of database: 138,416,789
effective HSP length: 55
effective length of query: 440
effective length of database: 113,700,834
effective search space: 50028366960
effective search space used: 50028366960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 72 (32.5 bits)