BLASTP 2.0.10 [Aug-26-1999]
Query= XF-02A11-GL37
(327 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|6459641|gb|AAF11414.1|AE002026_2 (AE002026) conserved hypoth... 102 3e-21
gi|466186|sp|P35155|YPUH_BACSU HYPOTHETICAL 22.0 KD PROTEIN IN ... 102 5e-21
gi|2145860|pir||S72956 hypothetical protein - Mycobacterium lep... 87 3e-16
gi|2065215|emb|CAB08280| (Z95117) hypothetical protein MLC1351.... 87 3e-16
gi|3322746 (AE001223) conserved hypothetical protein [Treponema... 85 8e-16
gi|2326753|emb|CAB10967| (Z98268) hypothetical protein Rv1710 [... 84 2e-15
gi|2496331|sp|P75477|Y214_MYCPN HYPOTHETICAL PROTEIN MG214 HOMO... 78 8e-14
gi|5738485|emb|CAB52833.1| (AL109848) hypothetical protein [Str... 73 3e-12
gi|1351512|sp|P47456|Y214_MYCGE HYPOTHETICAL PROTEIN MG214 >gi|... 67 2e-10
gi|5738265|gb|AAB91572.2| (AF034855) ORF5 [Agrobacterium tumefa... 65 7e-10
gi|2648974 (AE000993) conserved hypothetical protein [Archaeogl... 61 2e-08
gi|5457719|emb|CAB49210.1| (AJ248283) hypothetical protein [Pyr... 51 1e-05
gi|3258330|dbj|BAA31013.1| (AP000007) 195aa long hypothetical p... 49 6e-05
gi|1149658|emb|CAA60218| (X86496) hypB [Clostridium perfringens] 45 0.001
gi|1653807|dbj|BAA18718| (D90916) hypothetical protein [Synecho... 45 0.001
gi|4981005|gb|AAD35579.1|AE001726_13 (AE001726) conserved hypot... 44 0.002
gi|6320754|ref|NP_010834.1|YRF1-1| Y'-helicase protein 1; Yrf1-... 41 0.018
gi|6323498|ref|NP_013571.1|YRF1-4| Y'-helicase protein; Yrf1-4p... 41 0.018
gi|3721904|dbj|BAA33739| (AB016599) Y'-helicase protein 1 [Sacc... 41 0.018
gi|6322015|ref|NP_012091.1|YHR219W| Yhr219wp >gi|731587|sp|P389... 40 0.031
gi|4101475 (AF003547) casein kinase 1 [Dictyostelium discoideum] 40 0.031
gi|5081595|gb|AAD39458.1|AF133696_1 (AF133696) putative surface... 39 0.040
gi|6322961|ref|NP_013033.1|YLL067C| Yll067cp >gi|2132657|pir||S... 39 0.040
gi|2315451 (AF016448) No definition line found [Caenorhabditis ... 39 0.040
gi|6319355|ref|NP_009437.1|YBL113C| Ybl113cp >gi|2131309|pir||S... 39 0.040
gi|6321038|ref|NP_011117.1|YRF1-2| Yrf1-2p >gi|2506763|sp|P4010... 39 0.069
gi|6322962|ref|NP_013034.1|YLL066C| Yll066cp >gi|1077312|pir||S... 39 0.069
gi|1326004|emb|CAA90549| (Z50178) unknown [Saccharomyces cerevi... 39 0.069
gi|6323502|ref|NP_013573.1|YML133C| Yml133cp >gi|2497057|sp|Q03... 39 0.069
gi|6323990|ref|NP_014060.1|YRF1-6| Yrf1-6p >gi|1730660|sp|P5381... 39 0.069
gi|6321735|ref|NP_011812.1|YRF1-3| Yrf1-3p >gi|6324972|ref|NP_0... 39 0.069
gi|1176918|sp|P24089|YSY2_YEAST HYPOTHETICAL 137.7 KD PROTEIN I... 39 0.069
gi|535260|emb|CAA82996| (Z30339) STARP antigen [Plasmodium reic... 38 0.090
gi|4506433|ref|NP_002882.1|| Ras protein-specific guanine nucle... 38 0.090
gi|2135846|pir||A38985 nucleotide exchange factor CDC25 - human... 38 0.090
gi|1531653 (U67078) C2-HC type zinc finger protein X-MyT1 [Xeno... 38 0.12
gi|3393011|emb|CAA12115| (AJ224764) Clumping factor B [Staphylo... 38 0.12
gi|2120052|pir||S69963 TyB protein - yeast (Saccharomyces cerev... 38 0.15
gi|6325462|ref|NP_015530.1|YPR204W| Ypr204wp >gi|2133041|pir||S... 38 0.15
gi|140408|sp|P25927|YHFI_SALTY HYPOTHETICAL 43.1 KD PROTEIN IN ... 37 0.20
gi|499325|emb|CAA81224| (Z26314) STARP antigen [Plasmodium falc... 37 0.20
gi|232251|sp|Q00716|HEMA_RACVI HEMAGGLUTININ PRECURSOR >gi|3200... 37 0.20
gi|1522691 (U63111) dentin phosphoprotein precursor [Rattus nor... 37 0.20
gi|4539257|emb|CAB39846.1| (AL049495) Zinc finger, C3HC4 type, ... 37 0.20
gi|6644374|gb|AAF21035.1|AF209925_1 (AF209925) STARP antigen [P... 37 0.20
gi|1709525|sp|P54673|P3K1_DICDI PHOSPHATIDYLINOSITOL 3-KINASE 1... 37 0.26
gi|6686356|sp|P47098|YJZ7_YEAST TRANSPOSON TY1 PROTEIN B >gi|21... 37 0.26
gi|6320756|ref|NP_010835.1|YEL077C| Yel077cp >gi|2131557|pir||S... 37 0.26
gi|2120078|pir||S69866 TyB protein - yeast (Saccharomyces cerev... 37 0.26
gi|627969|pir||A53715 apomucin precursor - rat >gi|476097 (U034... 36 0.35
gi|3184134|emb|CAA03852| (AJ000007) AAS surface protein [Staphy... 36 0.35
gi|2454617 (AF016693) small intestinal mucin MUC3 [Homo sapiens] 36 0.35
gi|6321668|ref|NP_011745.1|SMI1| 57 kDa nuclear protein; Smi1p ... 36 0.45
gi|6322737|ref|NP_012810.1|ABF1| transcriptional activator and ... 36 0.45
gi|1077300|pir||S51848 hypothetical protein HRD1054 - yeast (Sa... 36 0.45
gi|6320526|ref|NP_010606.1|YDR320C| Ydr320cp >gi|2131428|pir||S... 36 0.45
gi|6322237|ref|NP_012311.1|YJL225C| Yjl225cp >gi|1176490|sp|P40... 36 0.45
gi|6425393|emb|CAB60506.1| (AL132860) predicted using Genefinde... 36 0.45
gi|6322017|ref|NP_012092.1|YIL177C| Yil177cp >gi|731903|sp|P404... 36 0.45
gi|5360963|emb|CAA66706.1| (X98082) RADHA protein [Drosophila m... 36 0.60
gi|1326266 (U58728) C54H2.3 gene product [Caenorhabditis elegans] 36 0.60
gi|6006448|emb|CAB56789.1| (X59800) IgA1 protease [Haemophilus ... 36 0.60
gi|1170513|sp|P44969|IGA0_HAEIN IMMUNOGLOBULIN A1 PROTEASE PREC... 36 0.60
gi|114814|sp|P14164|BAF1_YEAST TRANSCRIPTION FACTOR BAF1 (ARS B... 36 0.60
gi|3413|emb|CAA34421| (X16385) Baf1 protein (AA 1-731) [Sacchar... 36 0.60
gi|113005|sp|P22620|ABRA_PLAFC 101 KD MALARIA ANTIGEN (P101) (A... 35 0.78
gi|6319339|ref|NP_009422.1|OSH1| Shows homology to the human ox... 35 0.78
gi|113007|sp|P23745|ABRA_PLAFG 101 KD MALARIA ANTIGEN (P101) (A... 35 0.78
gi|6322611|ref|NP_012685.1|YJR151C| Yjr151cp >gi|1352944|sp|P47... 35 0.78
gi|1762996 (U67259) RING-finger protein [Helicoverpa armigera n... 35 0.78
gi|1763000 (U67261) RING-finger protein [Helicoverpa armigera n... 35 0.78
gi|2135766|pir||S53362 mucin 5AC (clone JER47) - human (fragment) 35 0.78
gi|4490665|emb|CAB38690.1| (AL035675) hypothetical protein. [Sc... 35 0.78
gi|548937|sp|Q06852|SLP1_CLOTM CELL SURFACE GLYCOPROTEIN 1 PREC... 35 1.0
gi|295616 (M24378) IRA1 [Saccharomyces cerevisiae] 35 1.0
gi|547576|emb|CAA55537| (X78937) IRA1 [Saccharomyces cerevisiae] 35 1.0
gi|2120068|pir||S69983 TyB protein - yeast (Saccharomyces cerev... 35 1.0
gi|6322945|ref|NP_013018.1|SRP40| nucleolar protein that is imm... 35 1.0
gi|995765 (U33442) mucin [Rattus norvegicus] 35 1.0
gi|295671 (L11275) selected as a weak suppressor of a mutant of... 35 1.0
gi|3599670|dbj|BAA33143| (AB009080) TRFA [Dictyostelium discoid... 35 1.0
gi|6319616|ref|NP_009698.1|IRA1| GTPase activating protein; Ira... 35 1.0
gi|484370|pir||JN0598 DNA topoisomerase (ATP-hydrolyzing) (EC 5... 34 1.3
gi|6321952|ref|NP_012028.1|KEL1| involved in cell fusion and mo... 34 1.3
gi|1174742|sp|P41516|TP2A_RAT DNA TOPOISOMERASE II, ALPHA >gi|5... 34 1.3
gi|6320985|ref|NP_011064.1|YER138C| transposon Ty putative pept... 34 1.3
gi|729317|sp|P39653|DEXT_STRDO DEXTRANASE PRECURSOR (ALPHA-1,6-... 34 1.3
gi|6322487|ref|NP_012560.1|YJR027W| Yjr027wp >gi|1078438|pir||S... 34 1.3
gi|2120066|pir||S69838 TyB protein - yeast (Saccharomyces cerev... 34 1.3
gi|2120065|pir||S69979 TyB protein - yeast (Saccharomyces cerev... 34 1.3
gi|2120064|pir||S69975 TyB protein - yeast (Saccharomyces cerev... 34 1.3
gi|1762998 (U67260) RING-finger protein [Helicoverpa armigera n... 34 1.3
gi|1763002 (U67262) RING-finger protein [Helicoverpa armigera n... 34 1.3
gi|1809295 (U67959) member of var gene family; implicated in an... 34 1.3
gi|2120055|pir||S69957 TyB protein - yeast (Saccharomyces cerev... 34 1.3
gi|2120063|pir||S69960 TyB protein - yeast (Saccharomyces cerev... 34 1.3
gi|2120079|pir||S69982 TyB protein - yeast (Saccharomyces cerev... 34 1.3
gi|3876064|emb|CAA96634.1| (Z72507) similar to Thrombospondin t... 34 1.3
gi|5326779|gb|AAD42044.1|AF097183_1 (AF097183) unknown [Cryptos... 34 1.3
gi|5596628|gb|AAD45608.1|AF161021_1 (AF161021) glycoprotein G [... 34 1.3
gi|5739567|gb|AAD50514.1|AC006042_1 (AC006042) supported by hum... 34 1.3
gi|6323601|ref|NP_013672.1|YML039W| TyB Gag-Pol protein.; Yml039wp 34 1.3
gi|1170515|sp|P45384|IGA2_HAEIN IMMUNOGLOBULIN A1 PROTEASE PREC... 34 1.8
gi|485429|pir||S22415 membrane protein TGN38 long form precurso... 34 1.8
gi|135698|sp|P19814|TGN3_RAT TRANS-GOLGI NETWORK INTEGRAL MEMBR... 34 1.8
gi|2078309 (U67264) HOAR [Helicoverpa zea nuclear polyhedrosis ... 34 1.8
gi|93165|pir||S25530 glycoprotein B - bovine herpesvirus 4 >gi|... 34 2.3
gi|684940 (U20661) unknown [Dictyostelium discoideum] 34 2.3
gi|1052834 (M93360) ORF UL119 [Macaca mulatta cytomegalovirus] 34 2.3
gi|2081630 (U20661) unknown [Dictyostelium discoideum] 34 2.3
gi|2842414|emb|CAA65748| (X97021) putative transcription factor... 34 2.3
gi|3201550|emb|CAA76638| (Y17116) fibrinogen-binding protein [S... 34 2.3
gi|3550596|emb|CAA06652| (AJ005647) sdr E [Staphylococcus aureus] 34 2.3
gi|3877947|emb|CAB03155.1| (Z81094) predicted using Genefinder;... 34 2.3
gi|5834649|emb|CAB55329.1| (Y09927) Mrp protein [Staphylococcus... 34 2.3
gi|1888529 (U89243) replicase [garlic virus B] 33 3.0
gi|1945315|emb|CAA97027| (Z72823) TY1B [Saccharomyces cerevisia... 33 3.0
gi|2078016|emb|CAB08447| (Z95207) hypothetical protein Rv2843 [... 33 3.0
gi|2120053|pir||S69839 TyB protein - yeast (Saccharomyces cerev... 33 3.0
gi|2120080|pir||S69949 TyB protein - yeast (Saccharomyces cerev... 33 3.0
gi|3550592|emb|CAA06650| (AJ005645) sdrc [Staphylococcus aureus] 33 3.0
gi|3834294 (U80846) No definition line found [Caenorhabditis el... 33 3.0
gi|6226547|sp|P03949|ABL1_CAEEL TYROSINE-PROTEIN KINASE ABL-1 >... 33 3.0
gi|6425196|emb|CAB60296.1| (Z50806) cDNA EST yk569a3.5 comes fr... 33 3.0
gi|6425197|emb|CAB60297.1| (Z50806) M79.1c [Caenorhabditis eleg... 33 3.0
gi|2494158|sp|P75354|DNJM_MYCPN DNAJ-LIKE PROTEIN MG200 HOMOLOG... 33 3.0
gi|6691800|emb|CAB65843.1| (AL133504) /prediction=(method:""gen... 33 3.0
gi|541336|pir||S41539 fibrinogen-binding protein - Staphylococc... 33 3.0
gi|6324768|ref|NP_014837.1|TOA1| Transcription factor IIA, larg... 33 3.0
gi|6093441|sp|Q29435|MUC1_HYLLA MUCIN 1 PRECURSOR >gi|897612 (L... 33 3.0
gi|3152593 (AC002986) Contains similarity to thyroid receptor i... 33 3.9
gi|5163172|gb|AAD40569.1| (AF100791) variant-specific surface p... 33 3.9
gi|5163174|gb|AAD40570.1| (AF100792) variant-specific surface p... 33 3.9
gi|129757|sp|P11073|PELC_ERWCH PECTATE LYASE C PRECURSOR >gi|68... 32 5.2
gi|6324467|ref|NP_014536.1|WSC3| Putative integral membrane pro... 32 5.2
gi|999880|pdb|2PEC| Pectate Lyase C (Plc) (E.C.4.2.2.2) >gi|23... 32 5.2
gi|2072425 (U83115) non-lens beta gamma-crystallin like protein... 32 5.2
gi|3328843|gb|AAC68011.1| (AE001315) Putative outer membrane pr... 32 5.2
gi|3758871|emb|CAA09005| (AJ010115) TspB protein [Neisseria men... 32 5.2
gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans] 32 5.2
gi|6006395|emb|CAB56768.1| (AJ132096) squamosa promoter binding... 32 5.2
gi|532113 (U13646) homeotic region most like HMPB_DROME: homeot... 32 5.2
gi|6716567|gb|AAF26681.1|AF174417_1 (AF174417) voltage-dependen... 32 5.2
gi|6716569|gb|AAF26682.1|AF174418_1 (AF174418) voltage-dependen... 32 5.2
gi|1078436|pir||S51894 TyA protein - yeast (Saccharomyces cerev... 32 6.8
gi|6322486|ref|NP_012561.1|YJR026W| Yjr026wp >gi|6323602|ref|NP... 32 6.8
gi|2822106|sp|P13942|CA2B_HUMAN COLLAGEN ALPHA 2(XI) CHAIN PREC... 32 6.8
gi|6016107|sp|Q27913|GBP_PSESE GROWTH-BLOCKING PEPTIDE PRECURSO... 32 6.8
gi|2120106|pir||S69837 TyA protein - yeast (Saccharomyces cerev... 32 6.8
gi|1519696 (U67956) coded for by C. elegans cDNA yk126f9.5; cod... 32 6.8
gi|1588315|prf||2208331A collagen:SUBUNIT=alpha2:ISOTYPE=XI [Ho... 32 6.8
gi|1724041 (U41068) collagen alpha2(XI) [Homo sapiens] 32 6.8
gi|2120108|pir||S69985 TyA protein - yeast (Saccharomyces cerev... 32 6.8
gi|1084591|pir||S53553 TyA protein - yeast (Saccharomyces cerev... 32 6.8
gi|2120110|pir||S69964 TyA protein - yeast (Saccharomyces cerev... 32 6.8
gi|3282686 (AF039527) limonene hydroxylase [Bacillus stearother... 32 6.8
gi|3327208|dbj|BAA31672| (AB014597) KIAA0697 protein [Homo sapi... 32 6.8
gi|83586|pir||A22671 TyA protein - yeast (Saccharomyces cerevis... 32 6.8
gi|3820987|emb|CAA20240.1| (AL031228) dJ1033B10.12 (collagen, t... 32 6.8
gi|112945|sp|P14196|AAC2_DICDI AAC-RICH MRNA CLONE AAC11 PROTEI... 32 8.9
gi|644840 (U19969) ZEB [Homo sapiens] 32 8.9
gi|1834361|emb|CAB06616| (Z84818) GP80 [Bovine herpesvirus 4] 32 8.9
gi|2144179|pir||JC4991 detergent sensitivity rescuer - Brevibac... 32 8.9
gi|3860185|gb|AAC72981.1| (AF101438) Polycomb homolog Pc1 [Xeno... 32 8.9
gi|3878644|emb|CAB03208.1| (Z81103) predicted using Genefinder;... 32 8.9
gi|42341|emb|CAA47821| (X67475) pectate lyase [Erwinia chrysant... 32 8.9
gi|4008381|emb|CAB03213.1| (Z81103) cDNA EST yk274b6.5 comes fr... 32 8.9
>gi|6459641|gb|AAF11414.1|AE002026_2 (AE002026) conserved
hypothetical protein [Deinococcus radiodurans]
Length = 182
Score = 102 bits (253), Expect = 3e-21
Identities = 64/164 (39%), Positives = 93/164 (56%), Gaps = 9/164 (5%)
Query: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHT--CAERSVELVEVASGF 75
++ ALLA+ +P+ L +L G+ + D+ RA++ A + L VA G+
Sbjct: 14 LIGAALLAAGRPVRLRELAGVLG----LGEDATLRAVQAFAAALEAAGLGITLEAVAGGY 69
Query: 76 RFQLKADVHAWVTPLWTERKT-KYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIH 134
R + + + PL S A LE LA+IAYRQP+TR EIE +RG + + +
Sbjct: 70 RLIVPPGLAGHLAPLLAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRGASAGT--VL 127
Query: 135 TLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178
TL+ERE ++VVG DA G+P L+GTT+ FL FGL L +LPPL
Sbjct: 128 TLQERELVKVVGRSDAVGQPLLYGTTEKFLLEFGLGSLQDLPPL 171
>gi|466186|sp|P35155|YPUH_BACSU HYPOTHETICAL 22.0 KD PROTEIN IN
RIBT-DACB INTERGENIC REGION (ORFX8)
>gi|629133|pir||S45550 hypothetical protein X8 -
Bacillus subtilis >gi|410132 (L09228) ORFX8 [Bacillus
subtilis] >gi|2634756|emb|CAB14253| (Z99116) similar to
hypothetical proteins [Bacillus subtilis]
Length = 197
Score = 102 bits (251), Expect = 5e-21
Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 6/186 (3%)
Query: 10 LDLTLIARIVEGALLAS-NQPLTLAQLQGLFP-NDPPIPPDSIQRAIELLQHTCAERSVE 67
LD+ IVE L A+ ++ LT QL + +P + A E T R +E
Sbjct: 3 LDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDT---RGIE 59
Query: 68 LVEVASGFRFQLKADVHAWVTPLWTERKTKYSRATLETLALIAYRQPITRGEIEQIRGVA 127
L+E A + K D ++ L S+A+LE LA+++Y+QPITR EIE+IRGV
Sbjct: 60 LIEYADTYMLSTKKDFAPYLKKLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVK 119
Query: 128 VNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLSDLKDIGEL 187
+ I+H+L + + VG D PG+ L+GTT FL+ FGLK LDELPPL + + L
Sbjct: 120 -SERILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPLPENAEEDVL 178
Query: 188 EPQLPL 193
+ + L
Sbjct: 179 QEEADL 184
>gi|2145860|pir||S72956 hypothetical protein - Mycobacterium leprae
>gi|467154 (U00021) No definition line found
[Mycobacterium leprae]
Length = 258
Score = 86.6 bits (211), Expect = 3e-16
Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 8 TQLDLTLIARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERS-- 65
++LD + ++E LL + P+T+ L P D I + L+ + AER
Sbjct: 48 SKLDADELGCVLEALLLVVDTPVTVEALAAAAEQ----PVDRIAAKLRLMVNEFAERDSG 103
Query: 66 VELVEVASGFRFQLKADVHAWVTPLWTE-RKTKYSRATLETLALIAYRQPITRGEIEQIR 124
++L A G+R +A +V L + +TK +RA LETLA++AYRQP+TR + +R
Sbjct: 104 IDLRHSAEGWRLYTRARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVR 163
Query: 125 GVAVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLSD-LKD 183
GV V++ ++ TL R I VG G +F TT+ FL+ GL L ELP ++ L D
Sbjct: 164 GVNVDA-VMRTLLARGLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDIAPLLPD 221
Query: 184 IGELE 188
+ +E
Sbjct: 222 VDTIE 226
>gi|2065215|emb|CAB08280| (Z95117) hypothetical protein MLC1351.04c
[Mycobacterium leprae]
Length = 231
Score = 86.6 bits (211), Expect = 3e-16
Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 8 TQLDLTLIARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERS-- 65
++LD + ++E LL + P+T+ L P D I + L+ + AER
Sbjct: 21 SKLDADELGCVLEALLLVVDTPVTVEALAAAAEQ----PVDRIAAKLRLMVNEFAERDSG 76
Query: 66 VELVEVASGFRFQLKADVHAWVTPLWTE-RKTKYSRATLETLALIAYRQPITRGEIEQIR 124
++L A G+R +A +V L + +TK +RA LETLA++AYRQP+TR + +R
Sbjct: 77 IDLRHSAEGWRLYTRARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVR 136
Query: 125 GVAVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLSD-LKD 183
GV V++ ++ TL R I VG G +F TT+ FL+ GL L ELP ++ L D
Sbjct: 137 GVNVDA-VMRTLLARGLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDIAPLLPD 194
Query: 184 IGELE 188
+ +E
Sbjct: 195 VDTIE 199
>gi|3322746 (AE001223) conserved hypothetical protein [Treponema
pallidum]
Length = 192
Score = 85.0 bits (207), Expect = 8e-16
Identities = 51/125 (40%), Positives = 74/125 (58%), Gaps = 11/125 (8%)
Query: 57 LQHTCAERSVELVEVASGFRFQLKADVHAWVTPLWTERKT-KYSRATLETLALIAYRQPI 115
L+ C E+ V L+ A+ V + L+ +R + SRA +ETL+++AY QP+
Sbjct: 68 LELHCNEQGVALLPAAT---------VRERLATLYGKRSEGRLSRAAMETLSIVAYAQPV 118
Query: 116 TRGEIEQIRGVAVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDEL 175
TR EIE IRGV ++ +I L ER I VG +D PGKPA +GTT+ FL F L+ + +L
Sbjct: 119 TRAEIEAIRGVGADT-MIRLLSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADL 177
Query: 176 PPLSD 180
P L +
Sbjct: 178 PKLDE 182
>gi|2326753|emb|CAB10967| (Z98268) hypothetical protein Rv1710
[Mycobacterium tuberculosis]
Length = 231
Score = 83.9 bits (204), Expect = 2e-15
Identities = 58/182 (31%), Positives = 94/182 (50%), Gaps = 5/182 (2%)
Query: 1 MPPHEADTQLDLTLIARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHT 60
+P +LD + R++E LL + P+T L + P+ + + + + T
Sbjct: 14 IPDIAEPAELDADELKRVLEALLLVIDTPVTADALAAA--TEQPVYRVAAKLQLMADELT 71
Query: 61 CAERSVELVEVASGFRFQLKADVHAWVTPLWTE-RKTKYSRATLETLALIAYRQPITRGE 119
+ ++L + G+R +A +V L + +TK +RA LETLA++AYRQP+TR
Sbjct: 72 GRDSGIDLRHTSEGWRMYTRARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRAR 131
Query: 120 IEQIRGVAVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLS 179
+ +RGV V++ ++ TL R I VG DA F TT+ FL+ GL L ELP ++
Sbjct: 132 VSAVRGVNVDA-VMRTLLARGLITEVG-TDADTGAVTFATTELFLERLGLTSLSELPDIA 189
Query: 180 DL 181
L
Sbjct: 190 PL 191
>gi|2496331|sp|P75477|Y214_MYCPN HYPOTHETICAL PROTEIN MG214 HOMOLOG
>gi|2146242|pir||S73861 hypothetical protein H10_orf208
- Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1674231
(AE000052) Mycoplasma pneumoniae, hypothetical protein
(P35155) homolog; similar to Swiss-Prot Accession Number
P35155, from B. subtilis [Mycoplasma pneumoniae]
Length = 208
Score = 78.4 bits (190), Expect = 8e-14
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 14 LIARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCA---ERSVELVE 70
L+A I ++ + LTLA+L + + + I+ A+ L+ + E +E+ +
Sbjct: 22 LVAAIYGLLFVSGEKGLTLAELNRVLRK---VGLEKIKAALVQLERKLSLDDESGIEIKK 78
Query: 71 VASGFRFQLKADVHAWVTPLWTER-KTKYSRATLETLALIAYRQPITRGEIEQIRGVAVN 129
FR K ++ ++ + K + T+E LA+IAY QP TR I +IRG A +
Sbjct: 79 FGHSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRG-ADS 137
Query: 130 SNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLSD 180
I+ L E+E I +G +D PG+P ++ + F D FG+ LDELP + +
Sbjct: 138 FQIVDDLLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELPKVEN 188
>gi|5738485|emb|CAB52833.1| (AL109848) hypothetical protein
[Streptomyces coelicolor A3(2)]
Length = 223
Score = 73.0 bits (176), Expect = 3e-12
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 5/162 (3%)
Query: 19 VEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRFQ 78
+E L+ ++P T +L + D+++ + ++ R EL +A G+RF
Sbjct: 30 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELAD--EYAVQGRGFELRLIAGGWRFY 87
Query: 79 LKADVHAWVTPLWTE-RKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTLE 137
+ + A V + + + ++A LETLA++AYRQP++RG + +RGV + ++ TL
Sbjct: 88 SRPEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCD-GVMRTLL 146
Query: 138 EREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLS 179
+R + G G L+ TT FL+ GL+ LDELP L+
Sbjct: 147 QRGLVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPELA 187
>gi|1351512|sp|P47456|Y214_MYCGE HYPOTHETICAL PROTEIN MG214
>gi|1361573|pir||F64223 hypothetical protein homolog
MG214 - Mycoplasma genitalium (SGC3) >gi|3844814
(U39701) conserved hypothetical protein [Mycoplasma
genitalium]
Length = 207
Score = 66.7 bits (160), Expect = 2e-10
Identities = 49/172 (28%), Positives = 83/172 (47%), Gaps = 8/172 (4%)
Query: 11 DLTLIARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAE---RSVE 67
+ L+A I + + +TL +L +F + ++ A+ L+ A+ VE
Sbjct: 18 EANLVASIYGLLFVCGAKGITLRELIRIFKK---AGIEKVKLALLALERKLADDEQSGVE 74
Query: 68 LVEVASGFRFQLKADVHAWVTPLWTER-KTKYSRATLETLALIAYRQPITRGEIEQIRGV 126
L + + F K + ++ L + K + +E LA+IAY QP TR I +IRGV
Sbjct: 75 LKKFGNSFSLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEIRGV 134
Query: 127 AVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178
+ I+ L +E I +G D PG+P ++ + F D FG+ LD+LP +
Sbjct: 135 D-SFQIVDDLIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 185
>gi|5738265|gb|AAB91572.2| (AF034855) ORF5 [Agrobacterium
tumefaciens]
Length = 226
Score = 65.2 bits (156), Expect = 7e-10
Identities = 58/178 (32%), Positives = 86/178 (47%), Gaps = 20/178 (11%)
Query: 19 VEGALLASNQPL---TLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGF 75
VE + AS +P+ TLA++ G SI I+ L+ R ELV VA G+
Sbjct: 42 VEAVIFASAEPVSRETLARVVG--------KECSIDLLIDDLREDLQGRPYELVSVAGGW 93
Query: 76 RFQLK---AD-VHAWVTPLWTERKTKYSRATLETLALIA--YRQPITRGEIEQIRGVAVN 129
+ + + AD + A P R T + E + L+A Y QPITRGE+ +I G V+
Sbjct: 94 QHRTRPRFADTIQASAAPT---RGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVS 150
Query: 130 SNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLSDLKDIGEL 187
+++ L +IR PG P + TT FL F ++ L +LP + L+D G L
Sbjct: 151 RDVMGNLRGAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLPNIEALEDAGLL 208
>gi|2648974 (AE000993) conserved hypothetical protein [Archaeoglobus
fulgidus]
Length = 166
Score = 60.5 bits (144), Expect = 2e-08
Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 14/157 (8%)
Query: 15 IARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASG 74
+ +IVE L +S++P+ +L+ + D ++I I+ + + S+E+++V
Sbjct: 3 LKKIVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIK--DYESRDTSIEIIKVGEK 60
Query: 75 FRFQLKADVHAWVTPLWTERKT--KYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNI 132
+ ++K +V ER T ++ R TL TLA+IA +QPIT ++ +IRG +
Sbjct: 61 YLMRVKPQYAEYV-----ERFTVREFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEH- 114
Query: 133 IHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGL 169
+ L+ER ++ + G+ + TT+ F YFGL
Sbjct: 115 VKKLQERGLVKA----EKKGRSTILTTTEEFATYFGL 147
>gi|5457719|emb|CAB49210.1| (AJ248283) hypothetical protein
[Pyrococcus abyssi]
Length = 192
Score = 51.2 bits (120), Expect = 1e-05
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAER--SVELVEVASG- 74
+VE AL + +PL++ +L D +++ IEL+ +ER ++E+V+VA
Sbjct: 9 LVEAALFVAGRPLSVKELSKALGIKSL---DYLEKLIELIASEYSERKSAIEIVKVAGDK 65
Query: 75 FRFQLKADVHAWVTPLWTERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIH 134
+ Q+K + V L K + + L+TLALIAY QP+ + +I ++RG +I
Sbjct: 66 WVMQVKQEYSQKVIHLMP--KPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKR 123
Query: 135 TLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLD 173
LE + + + + L GTT+ F + +G D
Sbjct: 124 LLE-----MGLIYAEPYERTKLLGTTEKFAELYGFPEND 157
>gi|3258330|dbj|BAA31013.1| (AP000007) 195aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 195
Score = 48.8 bits (114), Expect = 6e-05
Identities = 44/159 (27%), Positives = 78/159 (48%), Gaps = 13/159 (8%)
Query: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAER--SVELVEVASG- 74
+VE AL + +PL++ +L D +++ IEL+ AER ++E+ +VA
Sbjct: 12 LVEAALFVAGRPLSVKELSKALGIKSL---DYLEKLIELIASEYAERKSAIEVTKVAGDK 68
Query: 75 FRFQLKADVHAWVTPLWTERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIH 134
+ Q+K + V L K + + L+TLALIA+ QP+ + +I ++RG +I
Sbjct: 69 WVMQVKQEYSQRVIHLMP--KPELTAGELKTLALIAFLQPVEQSKIVKLRGSQAYEHIKR 126
Query: 135 TLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLD 173
LE + + + + L GTT+ F + +G D
Sbjct: 127 LLE-----MGLIYAEPYERTKLLGTTEKFAELYGFPEND 160
>gi|1149658|emb|CAA60218| (X86496) hypB [Clostridium perfringens]
Length = 56
Score = 44.9 bits (104), Expect = 0.001
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 99 SRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTLEE 138
S+A+LE+LA+I Y+QPITR EI++IRGV S I +E+
Sbjct: 16 SQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLVEK 55
>gi|1653807|dbj|BAA18718| (D90916) hypothetical protein
[Synechocystis sp.]
Length = 162
Score = 44.5 bits (103), Expect = 0.001
Identities = 41/176 (23%), Positives = 74/176 (41%), Gaps = 16/176 (9%)
Query: 15 IARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASG 74
+A +E L +P+ +A L + + D++ +E H + ++E+VE G
Sbjct: 3 LATTIEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHR--DSALEIVETNQG 60
Query: 75 FRFQLKADVHAWVTPLWTERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIH 134
+ QL+A + S A+L TLA IA + P+ + ++ ++RG +
Sbjct: 61 YSLQLRAAFQHLIQDFVP---ADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQ-VQ 116
Query: 135 TLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLSDLKDIGELEPQ 190
L E ++R + G+ T F YF +D LP D E +P+
Sbjct: 117 ELVETGFVR--KRKQTEGRSYWLEITDKFHQYF---EIDSLP-----ADFAEKKPK 162
>gi|4981005|gb|AAD35579.1|AE001726_13 (AE001726) conserved
hypothetical protein [Thermotoga maritima]
Length = 167
Score = 43.8 bits (101), Expect = 0.002
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 19 VEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERS--VELVEVASGFR 76
+E + ASN +TL +L + DP + I+RA+E L+ + + V L EV +R
Sbjct: 7 IEALIFASNG-ITLERLIKILEKDP----EEIKRALEELKKEYEDEAHGVVLREVNGRYR 61
Query: 77 FQLKADVHAWVTPLWTERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 136
F K + +V+ L + + +E +AL+ PI + EI+ RG +S ++ +L
Sbjct: 62 FFTKPEYAGFVSKLSGRKYKNLTDTQMEVVALLLISGPIPKSEIDAFRG-KDSSAVLSSL 120
Query: 137 EEREWIRVVGHRDAPGKPALFGTTKAFLD 165
+ +R + GK L+ + +F++
Sbjct: 121 QRMGIVR----KKRKGKSYLYQLSPSFVE 145
>gi|6320754|ref|NP_010834.1|YRF1-1| Y'-helicase protein 1; Yrf1-1p
>gi|6323500|ref|NP_013572.1|YRF1-5| Y'-helicase protein;
Yrf1-5p >gi|2131817|pir||S65004 hypothetical protein
YLR467w - yeast (Saccharomyces cerevisiae)
>gi|2132516|pir||S67814 probable membrane protein YDR545w
- yeast (Saccharomyces cerevisiae)
>gi|1360590|emb|CAA97727| (Z73327) ORF YLR467w
[Saccharomyces cerevisiae] >gi|1420848|emb|CAA99727|
(Z75302) Y' ORF [Saccharomyces cerevisiae]
>gi|1431574|emb|CAA98916| (Z74389) ORF YDR545w
[Saccharomyces cerevisiae]
Length = 1796
Score = 40.6 bits (93), Expect = 0.018
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ I+ S + T TN+ T +T
Sbjct: 1267 NATTTASTNVRTSATTTASINVRTSAITTESTNSSTNATTTASTNVRTS-------ATTT 1319
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 1320 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 1379
Query: 316 ADT 318
A T
Sbjct: 1380 AST 1382
Score = 32.8 bits (73), Expect = 3.9
Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTD----QTPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T ++ N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 1283 TASINVRTSAITTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 1342
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 1343 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 1402
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 1403 NKDGNAEDNRFHP 1415
>gi|6323498|ref|NP_013571.1|YRF1-4| Y'-helicase protein; Yrf1-4p
>gi|2131816|pir||S70310 hypothetical protein YLR466w -
yeast (Saccharomyces cerevisiae) >gi|2264354 (U22383)
Ylr466wp [Saccharomyces cerevisiae]
Length = 1382
Score = 40.6 bits (93), Expect = 0.018
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ I+ S + T TN+ T +T
Sbjct: 853 NATTTASTNVRTSATTTASINVRTSAITTESTNSSTNATTTASTNVRTS-------ATTT 905
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 906 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 965
Query: 316 ADT 318
A T
Sbjct: 966 AST 968
Score = 32.8 bits (73), Expect = 3.9
Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTD----QTPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T ++ N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 869 TASINVRTSAITTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 928
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 929 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 988
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 989 NKDGNAEDNRFHP 1001
>gi|3721904|dbj|BAA33739| (AB016599) Y'-helicase protein 1
[Saccharomyces cerevisiae]
Length = 997
Score = 40.6 bits (93), Expect = 0.018
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ I+ S + T TN+ T +T
Sbjct: 468 NATTTASTNVRTSATTTASINVRTSAITTESTNSSTNATTTASTNVRTS-------ATTT 520
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 521 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 580
Query: 316 ADT 318
A T
Sbjct: 581 AST 583
Score = 32.8 bits (73), Expect = 3.9
Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTD----QTPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T ++ N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 484 TASINVRTSAITTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 543
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 544 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 603
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 604 NKDGNAEDNRFHP 616
>gi|6322015|ref|NP_012091.1|YHR219W| Yhr219wp
>gi|731587|sp|P38900|YH19_YEAST HYPOTHETICAL 70.1 KD
PROTEIN IN PUR5 3'REGION >gi|626714|pir||S49000
hypothetical protein YHR219w - yeast (Saccharomyces
cerevisiae) >gi|551326 (U00029) Yhr219wp [Saccharomyces
cerevisiae]
Length = 624
Score = 39.9 bits (91), Expect = 0.031
Identities = 30/123 (24%), Positives = 52/123 (41%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA + ++T T SI+ T S T+ N++T T+ T++ +T
Sbjct: 95 NATTTASINVRTSATTTASINVRT------SATTTESTNSNTNAT-TTESTNSSTNATTT 147
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 148 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 207
Query: 316 ADT 318
A T
Sbjct: 208 AST 210
Score = 32.8 bits (73), Expect = 3.9
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNI-----ATDITDNDQPSTD 254
TA + ++T T S + T + S + T N+ T+ T+++ +T
Sbjct: 111 TASINVRTSATTTESTNSNTNATTTESTNSSTNATTTASINVRTSATTTESTNSNTSATT 170
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 171 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 230
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 231 NKDGNAEDNRFHP 243
>gi|4101475 (AF003547) casein kinase 1 [Dictyostelium discoideum]
Length = 426
Score = 39.9 bits (91), Expect = 0.031
Identities = 32/115 (27%), Positives = 48/115 (40%), Gaps = 10/115 (8%)
Query: 165 DYFGLKRLDELPPLSDLKDIGELEPQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAPISG 224
D+ +++L E PPL + Q + + QLQ Q Q ++ + TT
Sbjct: 289 DWVIVRKLREKPPLERPLSNDNKQIQQQIQQQQQAQQQLQQQAQQQQQQTTTTTTTS--- 345
Query: 225 ISPQPTQEVNTDTQTNIATDITDN------DQPSTDNQTSDRATDLITIDLENHN 273
S QP+ N T +NIAT TD PS +N SD++ T + N
Sbjct: 346 -SSQPSNVKNISTVSNIATTTTDEQFRQLLSTPSYNNVDSDQSPQQTTTTTSSSN 399
>gi|5081595|gb|AAD39458.1|AF133696_1 (AF133696) putative
surface-exposed virulence protein BigA [Salmonella
typhimurium]
Length = 1963
Score = 39.5 bits (90), Expect = 0.040
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 244 DITDNDQPSTDNQT--SDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKT 301
D+T D D+ T DR D +T ++ + P +D D+ VTPP++ D+ +
Sbjct: 190 DVTPPDDSGDDDVTPPDDRGDDDVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTP- 248
Query: 302 STADHYIDSDSQSDADTPPD 321
DS D DTPPD
Sbjct: 249 -------PDDSGDDDDTPPD 261
>gi|6322961|ref|NP_013033.1|YLL067C| Yll067cp
>gi|2132657|pir||S64819 probable membrane protein
YLL067c - yeast (Saccharomyces cerevisiae)
>gi|1360284|emb|CAA97522| (Z73172) ORF YLL067c
[Saccharomyces cerevisiae]
Length = 1205
Score = 39.5 bits (90), Expect = 0.040
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T S T+ N++T T+ TD++ +T
Sbjct: 712 NATTTASTNVRTSATTTASINVRT------SATTTESTNSNTSAT-TTESTDSNTSATTT 764
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+++D +T+ T N TS E N+ E +++ N T+T ++ + +
Sbjct: 765 ESTDSSTNATTTASINVRTSATTTESTNSNTNATTTESTNSSTNATTTEGTNSNTSATTT 824
Query: 316 ADT 318
A T
Sbjct: 825 AST 827
Score = 39.5 bits (90), Expect = 0.040
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 676 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 728
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D++ N T+TA + + + +
Sbjct: 729 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSSTNATTTASINVRTSATTT 788
Query: 316 ADT 318
T
Sbjct: 789 EST 791
Score = 36.4 bits (82), Expect = 0.35
Identities = 27/123 (21%), Positives = 53/123 (42%), Gaps = 5/123 (4%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPS-TD 254
TA + ++T T N + S TT + + T +TD+ TN T + N + S T
Sbjct: 728 TASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSSTNATTTASINVRTSATT 787
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQS 314
++++ T+ T + N +T+ E N+ +++ N T+T + +
Sbjct: 788 TESTNSNTNATTTESTNSSTNATTTEGTNSNTSATTTASTNSSTNATTTESTNASAKEDA 847
Query: 315 DAD 317
+ D
Sbjct: 848 NKD 850
>gi|2315451 (AF016448) No definition line found [Caenorhabditis
elegans]
Length = 832
Score = 39.5 bits (90), Expect = 0.040
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 195 NNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVN-TDTQTNIATDITDNDQPST 253
NN +++ +D++P+R+ S ++P + SP P+++ T +Q N + T +
Sbjct: 662 NNTEKKIVIKVNSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPTPTVKSLV 721
Query: 254 DNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQ 313
D SD + D P + VP +S P + D+ K + Y D S
Sbjct: 722 DYDESDDSDD-----------DPPSPDAVPSSSTGSPEKEGDSADGKKGDSPEYNDVSST 770
Query: 314 SDAD 317
S+ +
Sbjct: 771 SNEE 774
>gi|6319355|ref|NP_009437.1|YBL113C| Ybl113cp
>gi|2131309|pir||S70305 hypothetical protein YBL113c -
yeast (Saccharomyces cerevisiae)
Length = 792
Score = 39.5 bits (90), Expect = 0.040
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 200 TAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSD 259
TA + ++T T SI+ +T + T+ N++T T+ TD++ +T + +
Sbjct: 279 TASINVRTSATTTESINSST------NATTTESTNSNTSAT-TTESTDSNTNATTTASIN 331
Query: 260 RATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
T T + N NTS E N+ +++ N T+TA ++S ++A T
Sbjct: 332 VRTSATTTESTNSNTSATTTESTDSNTSATTTASTNSSTNATTTA----STNSSTNATT 386
>gi|6321038|ref|NP_011117.1|YRF1-2| Yrf1-2p
>gi|2506763|sp|P40105|YE20_YEAST HYPOTHETICAL 190.5 KD
PROTEIN IN ISC10 3'REGION >gi|2131559|pir||S59693
hypothetical protein YER190w - yeast (Saccharomyces
cerevisiae) >gi|971261 (U34775) Yer190wp [Saccharomyces
cerevisiae]
Length = 1681
Score = 38.7 bits (88), Expect = 0.069
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 1153 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 1205
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 1206 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 1265
Query: 316 ADT 318
A T
Sbjct: 1266 AST 1268
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/133 (18%), Positives = 54/133 (39%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T T N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 1169 TASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 1228
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 1229 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 1288
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 1289 NKDGNAEDNRFHP 1301
>gi|6322962|ref|NP_013034.1|YLL066C| Yll066cp
>gi|1077312|pir||S50953 hypothetical protein YLL066c -
yeast (Saccharomyces cerevisiae)
>gi|642317|emb|CAA87990| (Z47973) ORF L0519
[Saccharomyces cerevisiae] >gi|1360282|emb|CAA97520|
(Z73171) ORF YLL066c [Saccharomyces cerevisiae]
Length = 1205
Score = 38.7 bits (88), Expect = 0.069
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 676 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 728
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 729 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 788
Query: 316 ADT 318
A T
Sbjct: 789 AST 791
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/133 (18%), Positives = 54/133 (39%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T T N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 692 TASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 751
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 752 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 811
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 812 NKDGNAEDNRFHP 824
>gi|1326004|emb|CAA90549| (Z50178) unknown [Saccharomyces
cerevisiae]
Length = 1128
Score = 38.7 bits (88), Expect = 0.069
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 599 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 651
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 652 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 711
Query: 316 ADT 318
A T
Sbjct: 712 AST 714
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/133 (18%), Positives = 54/133 (39%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T T N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 615 TASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 674
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 675 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 734
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 735 NKDGNAEDNRFHP 747
>gi|6323502|ref|NP_013573.1|YML133C| Yml133cp
>gi|2497057|sp|Q03099|YMN3_YEAST HYPOTHETICAL 155.6 KD
PROTEIN IN COX14 5'REGION >gi|2131831|pir||S69875
hypothetical protein YML133c - yeast (Saccharomyces
cerevisiae)
Length = 1374
Score = 38.7 bits (88), Expect = 0.069
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 845 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 897
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 898 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 957
Query: 316 ADT 318
A T
Sbjct: 958 AST 960
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/133 (18%), Positives = 54/133 (39%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T T N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 861 TASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 920
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 921 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 980
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 981 NKDGNAEDNRFHP 993
>gi|6323990|ref|NP_014060.1|YRF1-6| Yrf1-6p
>gi|1730660|sp|P53819|YN79_YEAST HYPOTHETICAL 211.1 KD
PROTEIN IN THI12 5'REGION >gi|2132793|pir||S63325
probable membrane protein YNL339c - yeast (Saccharomyces
cerevisiae) >gi|2258153|emb|CAA96276| (Z71615) there is a
second Y' element in the left; subtelomeric region of
chromosome XIV; ORF YNL339c [Saccharomyces cerevisiae]
Length = 1859
Score = 38.7 bits (88), Expect = 0.069
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 1331 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 1383
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 1384 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 1443
Query: 316 ADT 318
A T
Sbjct: 1444 AST 1446
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/133 (18%), Positives = 54/133 (39%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T T N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 1347 TASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 1406
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 1407 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 1466
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 1467 NKDGNAEDNRFHP 1479
>gi|6321735|ref|NP_011812.1|YRF1-3| Yrf1-3p
>gi|6324972|ref|NP_015040.1|YRF1-7| Yrf1-7p
>gi|1723792|sp|P53345|YG67_YEAST HYPOTHETICAL 211.1 KD
PROTEIN IN MAL1S 3'REGION >gi|2132642|pir||S64633
probable membrane protein YGR296w - yeast (Saccharomyces
cerevisiae) >gi|1323541|emb|CAA97329| (Z73081) ORF
YGR296w; Y' element [Saccharomyces cerevisiae]
>gi|1370582|emb|CAA97870| (Z73521) ORF YPL283c
[Saccharomyces cerevisiae]
Length = 1859
Score = 38.7 bits (88), Expect = 0.069
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 1331 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 1383
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 1384 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 1443
Query: 316 ADT 318
A T
Sbjct: 1444 AST 1446
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/133 (18%), Positives = 54/133 (39%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T T N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 1347 TASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 1406
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 1407 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 1466
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 1467 NKDGNAEDNRFHP 1479
>gi|1176918|sp|P24089|YSY2_YEAST HYPOTHETICAL 137.7 KD PROTEIN IN
SUBTELOMERIC Y' REPEAT REGION OF CHR XV (ORF 2)
>gi|283170|pir||S28368 hypothetical protein Y'.2 - yeast
(Saccharomyces cerevisiae) >gi|775206 (U23472) ORF2;
second Y' ORF; some similarity to RNA helicases; Method:
conceptual translation supplied by author [Saccharomyces
cerevisiae]
Length = 1224
Score = 38.7 bits (88), Expect = 0.069
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 695 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 747
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E D+ + T+TA +++ +
Sbjct: 748 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTT 807
Query: 316 ADT 318
A T
Sbjct: 808 AST 810
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/133 (18%), Positives = 54/133 (39%), Gaps = 7/133 (5%)
Query: 200 TAQLQIQTDQTP----NRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
TA + ++T T N S + TT + + T + + +T+ T + T+++ +T
Sbjct: 711 TASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATT 770
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDV--PDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
+++D T T + + NTS N+ T + + T + + D+
Sbjct: 771 TESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTTESTNASAKEDA 830
Query: 313 QSDADTPPDGAYP 325
D + + +P
Sbjct: 831 NKDGNAEDNRFHP 843
>gi|535260|emb|CAA82996| (Z30339) STARP antigen [Plasmodium
reichenowi]
Length = 655
Score = 38.3 bits (87), Expect = 0.090
Identities = 33/138 (23%), Positives = 63/138 (44%), Gaps = 21/138 (15%)
Query: 194 HNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTD----TQTNIATDITDND 249
HNN+ +T T+ T N + + I+ + + T +NT T TN T TDN+
Sbjct: 218 HNNNINT-----NTNSTDNSNTNTNLTDITTTTKKWTDNINTTQNLTTSTNTTTVSTDNN 272
Query: 250 ------QPSTDNQTSDRATDLI---TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINK 300
+P+ +N T+ ++TD T + +N NT ++ +N++T ++ + +
Sbjct: 273 NNNINTKPTDNNNTNIKSTDNYNTGTKETDNKNTD---IKATDNNNITITTDNTNTNVIS 329
Query: 301 TSTADHYIDSDSQSDADT 318
T + + S S+ T
Sbjct: 330 TDNSKTNVISKDNSNTHT 347
Score = 33.2 bits (74), Expect = 3.0
Identities = 32/134 (23%), Positives = 56/134 (40%), Gaps = 17/134 (12%)
Query: 195 NNHRHTAQLQIQTDQTPNRSISGTTAPISGISP-------QPTQEVNTDTQT---NIATD 244
N++ HT I TD + IS IS + T NTDT+ N TD
Sbjct: 342 NSNTHT----ISTDNSKTNVISTDNNNTDTISTDNDNTDTKATDNDNTDTKATDNNNNTD 397
Query: 245 ITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTA 304
D +TD + +D++ + T +N+N + DN+ T + N N +T
Sbjct: 398 TKATDNNNTDTKATDKSNNTDTKATDNNNNTD---TKATDNNNTNTKATDSNNTNTKATD 454
Query: 305 DHYIDSDSQSDADT 318
++ ++ + + +T
Sbjct: 455 NNNTNTKATDNNNT 468
Score = 32.1 bits (71), Expect = 6.8
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 194 HNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPST 253
+ N + T T T N + + + + + T NT+T+ ATD + + +T
Sbjct: 437 NTNTKATDSNNTNTKATDNNNTNTKATDNNNTNTKATDNNNTNTK---ATDNNNTNTKAT 493
Query: 254 D-NQTSDRATD---LITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYID 309
D N T+ +ATD T +N+NT+ ++ +N+ T ++ +NT N+ A++Y +
Sbjct: 494 DNNNTNTKATDNNNTNTKATDNNNTNTKATDN--NNTNTKATDNNNNT-NQYVFANNYDE 550
Query: 310 SDS 312
+ S
Sbjct: 551 TTS 553
>gi|4506433|ref|NP_002882.1|| Ras protein-specific guanine
nucleotide-releasing factor 1; H-GRF55
>gi|2136087|pir||I58371 Ras-specific guanine
nucleotide-releasing factor - human
>gi|386047|bbs|133285 (S62035) Ras-specific guanine
nucleotide-releasing factor, H-GRF55=CDC25 homolog
[human, brain stem, Peptide, 489 aa] [Homo sapiens]
Length = 489
Score = 38.3 bits (87), Expect = 0.090
Identities = 27/125 (21%), Positives = 48/125 (37%)
Query: 200 TAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSD 259
T++L + + T G T P P + +++ +DI N D +TS
Sbjct: 15 TSKLYVSSSFTNKIPDEGDTTPEKPEDPSALSKQSSEVSMREESDIDQNQSDDGDTETSP 74
Query: 260 RATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTP 319
+ ++N N+S FPL + V DN + S A + + + ++ TP
Sbjct: 75 TKSPTTPKSVKNKNSSEFPLFSYNNGVVMTSCRELDNNRSALSAASAFAIATAGANEGTP 134
Query: 320 PDGAY 324
Y
Sbjct: 135 NKEKY 139
>gi|2135846|pir||A38985 nucleotide exchange factor CDC25 - human
>gi|433720 (L26584) CDC25 [Homo sapiens]
Length = 1275
Score = 38.3 bits (87), Expect = 0.090
Identities = 27/125 (21%), Positives = 48/125 (37%)
Query: 200 TAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSD 259
T++L + + T G T P P + +++ +DI N D +TS
Sbjct: 801 TSKLYVSSSFTNKIPDEGDTTPEKPEDPSALSKQSSEVSMREESDIDQNQSDDGDTETSP 860
Query: 260 RATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTP 319
+ ++N N+S FPL + V DN + S A + + + ++ TP
Sbjct: 861 TKSPTTPKSVKNKNSSEFPLFSYNNGVVMTSCRELDNNRSALSAASAFAIATAGANEGTP 920
Query: 320 PDGAY 324
Y
Sbjct: 921 NKEKY 925
>gi|1531653 (U67078) C2-HC type zinc finger protein X-MyT1 [Xenopus
laevis]
Length = 1122
Score = 37.9 bits (86), Expect = 0.12
Identities = 27/118 (22%), Positives = 48/118 (39%), Gaps = 3/118 (2%)
Query: 202 QLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRA 261
++ IQT+ I T+ PIS +P EVN + + D+ D ++ D+ +
Sbjct: 201 EIIIQTEDA-EEVIEVTSEPISESGTEPRDEVNCEDTEKLQKDMIDEEEEEEDDDVDEED 259
Query: 262 TDLITID--LENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
D + D E ++S +D+P S P H + + ++ S D D
Sbjct: 260 DDDLEEDEEEEEEHSSEMANQDLPHASQDSPKPHCEGHFSPKPEYSVIVEVRSDDDKD 317
>gi|3393011|emb|CAA12115| (AJ224764) Clumping factor B
[Staphylococcus aureus]
Length = 913
Score = 37.9 bits (86), Expect = 0.12
Identities = 31/116 (26%), Positives = 49/116 (41%), Gaps = 5/116 (4%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDIT-DNDQPSTDNQTSDRATDLIT 266
D TP + +P P P E + D + + D D+D S SD +D
Sbjct: 545 DPTPGPPVDPEPSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDS-- 602
Query: 267 IDLENHNTSPFPLE-DVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
D E+ + S + D +S + + D+ + S +D DSDS SD+D+ D
Sbjct: 603 -DSESDSDSDSDSDSDSDSDSESDSDSESDSDSDSDSDSDSDSDSDSDSDSDSDSD 657
Score = 36.4 bits (82), Expect = 0.35
Identities = 27/97 (27%), Positives = 49/97 (49%), Gaps = 3/97 (3%)
Query: 226 SPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPD 284
SP P + ++D+ + +D +D+D S + SD +D + D E+ + S D
Sbjct: 579 SPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDS-DSESDSDSESD-SDSDS 636
Query: 285 NSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
+S + + D+ + S +D DSDS+SD+D+ D
Sbjct: 637 DSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSDSESD 673
Score = 32.1 bits (71), Expect = 6.8
Identities = 23/102 (22%), Positives = 46/102 (44%), Gaps = 3/102 (2%)
Query: 223 SGISPQPTQEVNTDTQTNIATDI---TDNDQPSTDNQTSDRATDLITIDLENHNTSPFPL 279
SG + ++D+ ++ +D +D+D S + SD +D + + ++
Sbjct: 598 SGSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSDSDSDSDSDSDSDSDSDSDSDSDSD 657
Query: 280 EDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
D +S + + D+ + S +D DSDS SD+D+ D
Sbjct: 658 SDSDSDSESDSDSESDSESDSDSDSDSDSDSDSDSDSDSDSD 699
Score = 32.1 bits (71), Expect = 6.8
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 232 EVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPN 291
E ++D+ ++ +D +D+D S + SD +D + + ++ D +S + +
Sbjct: 675 ESDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 733
Query: 292 EHEDNTINKTSTADHYIDSDSQSDADTPPD 321
D+ + S +D DSDS SD+D+ D
Sbjct: 734 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 763
Score = 31.7 bits (70), Expect = 8.9
Identities = 24/90 (26%), Positives = 47/90 (51%), Gaps = 3/90 (3%)
Query: 232 EVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPN 291
E ++D++++ +D +D+D S + SD +D + D ++ + S D +S + +
Sbjct: 623 ESDSDSESDSDSD-SDSDSDSDSDSDSDSDSDSDS-DSDSDSDSESD-SDSESDSESDSD 679
Query: 292 EHEDNTINKTSTADHYIDSDSQSDADTPPD 321
D+ + S +D DSDS SD+D+ D
Sbjct: 680 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 709
>gi|2120052|pir||S69963 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.L
Length = 1755
Score = 37.5 bits (85), Expect = 0.15
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + P E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHLRP--ELTESTVNHTNHSD 451
>gi|6325462|ref|NP_015530.1|YPR204W| Ypr204wp
>gi|2133041|pir||S65341 probable membrane protein
YPR204w - yeast (Saccharomyces cerevisiae)
>gi|1370587|emb|CAA97896| (Z73541) ORF YPR204w
[Saccharomyces cerevisiae]
Length = 1032
Score = 37.5 bits (85), Expect = 0.15
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T S T+ N++T T+ TD++ +T
Sbjct: 504 NATTTASTNVRTSATTTASINVRT------SATTTESTNSNTSAT-TTESTDSNTSATTT 556
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
++++ +T+ T N TS E N+ E +++ N T+T ++ + +
Sbjct: 557 ESTNSSTNATTTASINVRTSATTTESTNSNTNATTTESTNSSTNATTTEGTNSNTSATTT 616
Query: 316 ADT 318
A T
Sbjct: 617 AST 619
Score = 37.5 bits (85), Expect = 0.15
Identities = 28/123 (22%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N TA ++T T SI+ T+ + S + T TN+ T +T
Sbjct: 468 NATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRTS-------ATTT 520
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSD 315
+ + T T + N NTS E N+ E +++ N T+TA + + + +
Sbjct: 521 ASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTNSSTNATTTASINVRTSATTT 580
Query: 316 ADT 318
T
Sbjct: 581 EST 583
>gi|140408|sp|P25927|YHFI_SALTY HYPOTHETICAL 43.1 KD PROTEIN IN CYSG
3'REGION (ORF3) >gi|96763|pir||C39200 hypothetical
protein (cysG 3' region) - Salmonella typhimurium
>gi|153923 (M64606) ORF 3; putative [Salmonella
typhimurium]
Length = 416
Score = 37.1 bits (84), Expect = 0.20
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 244 DITDNDQPSTDNQT--SDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKT 301
D+T D D+ T D D +T ++ + P +D D+ VTPP++ D+ +
Sbjct: 176 DVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTPP 235
Query: 302 STADHYIDSDSQSDADTPPD 321
DS D DTPPD
Sbjct: 236 D--------DSGDDDDTPPD 247
>gi|499325|emb|CAA81224| (Z26314) STARP antigen [Plasmodium
falciparum]
Length = 604
Score = 37.1 bits (84), Expect = 0.20
Identities = 30/132 (22%), Positives = 57/132 (42%), Gaps = 11/132 (8%)
Query: 194 HNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDND---- 249
HNN+ +T T N +++ T+ ++ N T TN T TDN+
Sbjct: 218 HNNNINTNTNSTDNSNT-NTNLTDNTSTTKKLTDNINTTQNLTTSTNTTTVSTDNNNINT 276
Query: 250 QPSTDNQTSDRATDLI---TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADH 306
+P +N T ++TD T + +N NT ++ +N++T ++ + + T +
Sbjct: 277 KPIDNNNTDIKSTDNYNTGTKETDNKNTD---IKATDNNNITTTTDNTNTNVISTDNSKT 333
Query: 307 YIDSDSQSDADT 318
+ S S +T
Sbjct: 334 NVISTDNSKTNT 345
Score = 35.2 bits (79), Expect = 0.78
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 207 TDQTPNRSISGTTAPISGISPQ--PTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDL 264
TD T IS + + IS T ++TD N T +TDND + T + TD
Sbjct: 318 TDNTNTNVISTDNSKTNVISTDNSKTNTISTDND-NADTILTDNDNNTDIILTDNNNTDT 376
Query: 265 ITIDLENHNTSPFPLEDVPDNSVTPPNEHE----DNTINKTSTADHYIDSDSQS 314
I+ D +N +T + + T N + DN KT++ D+ ++++++
Sbjct: 377 ISTDNDNADTKATDNNNNTNTKATDNNNTKIISPDNNNTKTTSTDNNNNTNTKA 430
>gi|232251|sp|Q00716|HEMA_RACVI HEMAGGLUTININ PRECURSOR
>gi|320031|pir||HNVZRA hemagglutinin precursor -
raccoonpox virus >gi|333626 (M94169) hemagglutinin
[Raccoon poxvirus]
Length = 310
Score = 37.1 bits (84), Expect = 0.20
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 194 HNNHRHTAQLQI----QTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDND 249
H +H + I T Q S S T++ IS S + V DTQ N+ TD TDN
Sbjct: 153 HTEEQHDSDTTICTSESTTQISETSESTTSSQISETSESTSYGVEDDTQYNVTTDTTDNS 212
Query: 250 QPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYID 309
T + T I+ + T+ L D + ++ + + T + Y
Sbjct: 213 --DTIGTLPEEDTTTISTTIHKTTTTDDNLYDTYNEPISVSSSIPTTVESVTISTTKYTT 270
Query: 310 SD 311
SD
Sbjct: 271 SD 272
>gi|1522691 (U63111) dentin phosphoprotein precursor [Rattus
norvegicus]
Length = 267
Score = 37.1 bits (84), Expect = 0.20
Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 194 HNNHRHTAQLQIQTDQTPNRSISGTTAPISGISP-QPTQEVNTDTQTNIATDITDNDQPS 252
++NH + + + ++D + + S S ++ S S T + + + T+ ++D +D+ S
Sbjct: 110 NSNHDNDSDSESKSDSSDSDSDSSDSSDSSDSSDTSETSDSSDSSDTSDSSDSSDSSDSS 169
Query: 253 TDNQTSDRA------------TDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINK 300
+ TSD + +D + D ++ N+S D D+S + ++ + ++ +
Sbjct: 170 NSSDTSDSSDSSDGDSSDGDSSDSDSSDSDSSNSSDSDSSDSSDSSSSDSSDSDSDSKDS 229
Query: 301 TS--------TADHYIDSDSQSDADT 318
TS + + DSDS SD+D+
Sbjct: 230 TSDSSDDNSKSGNGNSDSDSDSDSDS 255
Score = 34.8 bits (78), Expect = 1.0
Identities = 25/125 (20%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
+D + + S T+ + + + + ++ ++D +D+ S + + ++D +
Sbjct: 136 SDSSDSSDTSETSDSSDSSDTSDSSDSSDSSDSSNSSDTSDSSDSSDGDSSDGDSSDSDS 195
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYID--------SDSQSDADT 318
D ++ N+S D D+S + ++ + + +K ST+D D SDS SD+D+
Sbjct: 196 SDSDSSNSSDSDSSDSSDSSSSDSSDSDSD--SKDSTSDSSDDNSKSGNGNSDSDSDSDS 253
Query: 319 PPDGA 323
+G+
Sbjct: 254 DSEGS 258
>gi|4539257|emb|CAB39846.1| (AL049495) Zinc finger, C3HC4 type, ring
finger protein [Schizosaccharomyces pombe]
Length = 741
Score = 37.1 bits (84), Expect = 0.20
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 192 PLHNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVN-TDTQTNIAT------- 243
P+ N H T T + ++G A I + QE +D++ + T
Sbjct: 243 PVENTHPENPDSNTSTPTTRSEPLAGEGASIDAENASSRQETTPSDSRPSTLTSLFNAFF 302
Query: 244 ----DITDNDQPSTDNQTSDR-------ATDLITIDLENHNTSPFPLEDVPDNSVTPPNE 292
D +++P T N TS+ +TDL T +L + N P+E P S+ PPN
Sbjct: 303 SSMPDRPSSNEPMTSNLTSNSGSMTNSTSTDLPTSNLPSQNAPARPVE--PSPSIQPPNL 360
Query: 293 HEDNTINKTSTA 304
T + ST+
Sbjct: 361 LNLPTASPESTS 372
>gi|6644374|gb|AAF21035.1|AF209925_1 (AF209925) STARP antigen
[Plasmodium falciparum]
Length = 559
Score = 37.1 bits (84), Expect = 0.20
Identities = 30/132 (22%), Positives = 57/132 (42%), Gaps = 11/132 (8%)
Query: 194 HNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDND---- 249
HNN+ +T T N +++ T+ ++ N T TN T TDN+
Sbjct: 173 HNNNINTNTNSTDNSNT-NTNLTDNTSTTKKLTDNINTTQNLTTSTNTTTVSTDNNNINT 231
Query: 250 QPSTDNQTSDRATDLI---TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADH 306
+P +N T ++TD T + +N NT ++ +N++T ++ + + T +
Sbjct: 232 KPIDNNNTDIKSTDNYNTGTKETDNKNTD---IKATDNNNITTTTDNTNTNVISTDNSKT 288
Query: 307 YIDSDSQSDADT 318
+ S S +T
Sbjct: 289 NVISTDNSKTNT 300
Score = 34.8 bits (78), Expect = 1.0
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 207 TDQTPNRSISGTTAPISGISPQ--PTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDL 264
TD T IS + + IS T ++TD N T +TDND + T + TD
Sbjct: 273 TDNTNTNVISTDNSKTNVISTDNSKTNTISTDND-NADTILTDNDNNTDIILTDNNDTDT 331
Query: 265 ITIDLENHNTSPFPLEDVPDNSVTPPNEHE----DNTINKTSTADH 306
I+ D +N +T + + T N + DN KT++ D+
Sbjct: 332 ISTDNDNADTKATDNNNNTNTKATDNNNTKIISPDNNNTKTASTDN 377
Score = 32.8 bits (73), Expect = 3.9
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 210 TPNRSISGTT----APISGISPQPTQEVNTD-TQTNIATDITDNDQPSTDNQTSDRATDL 264
T N +I+ TT + T ++TD ++TN T TDND T +D TD+
Sbjct: 264 TDNNNITTTTDNTNTNVISTDNSKTNVISTDNSKTN--TISTDNDNADTILTDNDNNTDI 321
Query: 265 ITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTS 302
I D N++T ++ DN+ T ++ +NT K +
Sbjct: 322 ILTD--NNDTDTISTDN--DNADTKATDNNNNTNTKAT 355
>gi|1709525|sp|P54673|P3K1_DICDI PHOSPHATIDYLINOSITOL 3-KINASE 1
(PI3-KINASE) (PTDINS-3-KINASE) (PI3K) >gi|733520
(U23476) phosphatidylinositol-4,5-diphosphate 3-kinase
[Dictyostelium discoideum]
Length = 1570
Score = 36.7 bits (83), Expect = 0.26
Identities = 28/101 (27%), Positives = 45/101 (43%), Gaps = 11/101 (10%)
Query: 204 QIQTDQTPNRSISGTTAPISGISPQ-PTQEVNTDTQTNIATDITDNDQPSTDNQTSDRAT 262
++ T++ P + + TT + IS PT T T T+ DIT + S +R+
Sbjct: 285 KLDTEEKPATTTTTTTTTSTSISTSTPTTTTTTTTNTSTTNDITIKPKTSPTKNNEERSQ 344
Query: 263 DLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTST 303
IT T P+E++ TP + +NT KTS+
Sbjct: 345 SPIT-------TPKQPVEEIVKKVSTPKS---NNTSKKTSS 375
>gi|6686356|sp|P47098|YJZ7_YEAST TRANSPOSON TY1 PROTEIN B
>gi|2131097|emb|CAA89553| (Z49526) TY1B [Saccharomyces
cerevisiae]
Length = 1755
Score = 36.7 bits (83), Expect = 0.26
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D +T E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHD--LTLGQELTESTVNHTNHSD 451
>gi|6320756|ref|NP_010835.1|YEL077C| Yel077cp
>gi|2131557|pir||S70306 hypothetical protein YEL077c -
yeast (Saccharomyces cerevisiae)
Length = 1277
Score = 36.7 bits (83), Expect = 0.26
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDIT-----DNDQ 250
N TA + ++T T +SI+ +T S T TN T T +++
Sbjct: 760 NATTTASINVRTSATTTKSINSSTNATITESTNSNTNATTTESTNSKTSATTTASTNSNT 819
Query: 251 PSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDS 310
+T ++++ T T N NTS E N+ +++ N T+T +
Sbjct: 820 SATTTESTNSKTSATTTASTNSNTSATTTESTNSNTSATTTASTNSSTNATTTESTNASA 879
Query: 311 DSQSDAD 317
++ D
Sbjct: 880 KEDANKD 886
Score = 34.0 bits (76), Expect = 1.8
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 200 TAQLQIQTDQTPNRSISG-----TTAPIS-GISPQPTQEVNTDTQTNIATDITDNDQPST 253
TA + ++T T S + TTA I+ S T+ +N+ T I T+ T+++ +T
Sbjct: 740 TASINVRTSATTTESTNSSTNATTTASINVRTSATTTKSINSSTNATI-TESTNSNTNAT 798
Query: 254 DNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQ 313
++++ T T N NTS E NS T N ++T +S++
Sbjct: 799 TTESTNSKTSATTTASTNSNTSATTTEST--NSKTSATTTASTNSNTSATTTESTNSNTS 856
Query: 314 S 314
+
Sbjct: 857 A 857
>gi|2120078|pir||S69866 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1
Length = 1755
Score = 36.7 bits (83), Expect = 0.26
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLIT 266
++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTDN + ++T
Sbjct: 367 EKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTDNDSISKST---- 421
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
T P L + D + P E ++T+N T+ +D
Sbjct: 422 -------TEPIQLNNKHDLHLRP--ETTESTVNHTNHSD 451
>gi|627969|pir||A53715 apomucin precursor - rat >gi|476097 (U03407)
apomucin [Rattus norvegicus]
Length = 322
Score = 36.4 bits (82), Expect = 0.35
Identities = 31/113 (27%), Positives = 50/113 (43%), Gaps = 4/113 (3%)
Query: 210 TPNRSISGTTAPIS-GISPQPTQEVNTDTQTNIATD--ITDNDQPSTDNQ-TSDRATDLI 265
T + + + TT P + +P PT + TD+ T T+ TD+ P+ N+ T+D T
Sbjct: 142 TDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAPTNKPTTDSTTPAP 201
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
T +T+P P +S TP + T + T +DS + A T
Sbjct: 202 TTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPT 254
Score = 36.0 bits (81), Expect = 0.45
Identities = 31/113 (27%), Positives = 49/113 (42%), Gaps = 4/113 (3%)
Query: 210 TPNRSISGTTAPIS-GISPQPTQEVNTDTQTNIATD--ITDNDQPS-TDNQTSDRATDLI 265
T + + + TT P + +P PT + TD+ T T+ TD+ P+ T T+D T
Sbjct: 155 TDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAPTNKPTTDSTTPAPTTKPTTDSTTPAP 214
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
T +T+P P +S TP + T + T +DS + A T
Sbjct: 215 TTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPT 267
Score = 35.2 bits (79), Expect = 0.78
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 211 PNRSISGTTAPISGISPQPTQEVNTDTQTNIATD--ITDNDQPS-TDNQTSDRATDLITI 267
PN+ ++ +P T + TD+ T T TD+ P+ T T+D T T
Sbjct: 105 PNKQLTSDKIETKVTTPAQTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTT 164
Query: 268 DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
+T+P P +S TP ++ T + T +DS + A T
Sbjct: 165 KPTTDSTTPAPTNKPTTDSTTPAPTNKPTTDSTTPAPTTKPTTDSTTPAPT 215
Score = 32.5 bits (72), Expect = 5.2
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 226 SPQPTQEVNTDTQTNIATD--ITDNDQPS-TDNQTSDRATDLITIDLENHNTSPFPLEDV 282
+P PT + TD+ T T TD+ P+ T T+D T T +T+P P
Sbjct: 198 TPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKP 257
Query: 283 PDNSVTPPNEHEDNTINKTSTA 304
+S TP + T K ST+
Sbjct: 258 TTDSTTPAPTTKIPTTPKPSTS 279
>gi|3184134|emb|CAA03852| (AJ000007) AAS surface protein
[Staphylococcus saprophyticus]
Length = 1463
Score = 36.4 bits (82), Expect = 0.35
Identities = 29/129 (22%), Positives = 52/129 (39%), Gaps = 11/129 (8%)
Query: 195 NNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTD 254
N +T +Q +T+ T S T+ +S + + + N+ N + ND+ T
Sbjct: 147 NEENNTDSIQSETNST--NEASQTSNDVSSNAEETNTDENSSDVANQNEPVAQNDKAETS 204
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQS 314
N+ D+ + D++ T +D + +T NE E N S+ + SD +
Sbjct: 205 NE------DVASSDVKQDGTHS---DDNASDDLTDQNESETLNDNAVSSNEDVASSDVKQ 255
Query: 315 DADTPPDGA 323
D D A
Sbjct: 256 DGTHSDDNA 264
>gi|2454617 (AF016693) small intestinal mucin MUC3 [Homo sapiens]
Length = 236
Score = 36.4 bits (82), Expect = 0.35
Identities = 30/117 (25%), Positives = 54/117 (45%), Gaps = 7/117 (5%)
Query: 211 PNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPST---DNQTSDRATDLITI 267
PN + S T P++ I T V+++ T AT + D P T + +S + I+I
Sbjct: 41 PNSNPSEGTTPLTSIPVSTTPVVSSEASTLSATPV-DTSTPGTTSAEATSSPTTAEGISI 99
Query: 268 DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADH--YIDSDSQSDADTPPDG 322
+ PL+ +P ++ TP E +T++ T + + S + S + TP +G
Sbjct: 100 PTSTPSEGKTPLKSIPVSN-TPVANSEASTLSTTPADSNSPVVTSTAVSSSPTPAEG 155
>gi|6321668|ref|NP_011745.1|SMI1| 57 kDa nuclear protein; Smi1p
>gi|417781|sp|P32566|SMI1_YEAST SMI1 PROTEIN (KILLER
TOXIN RESISTANT PROTEIN 4) >gi|1078065|pir||A55923 KNR4
protein - yeast (Saccharomyces cerevisiae) >gi|295663
(L15423) MAR inhibitor suppressor [Saccharomyces
cerevisiae] >gi|311113 (L13164) k9 killer toxin
resistant gene [Saccharomyces cerevisiae]
>gi|886922|emb|CAA61178| (X87941) ORF 505 [Saccharomyces
cerevisiae] >gi|1323413|emb|CAA97257| (Z73013) ORF
YGR229c [Saccharomyces cerevisiae]
Length = 505
Score = 36.0 bits (81), Expect = 0.45
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 183 DIGELEPQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQT--N 240
DI E L + + A +I Q S++GT+ G +V TQ N
Sbjct: 120 DITHAEEDLEVSFPNPVKASFKIHDGQEDLESMTGTSGLFYGFQLMTLDQVVAMTQAWRN 179
Query: 241 IATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPN 291
+A ++ Q + TS ++ +E N + F L ++PD PPN
Sbjct: 180 VAKNLNKRSQQGLSHVTSTGSSS----SMERLNGNKFKLPNIPDQKSIPPN 226
>gi|6322737|ref|NP_012810.1|ABF1| transcriptional activator and ARS1
binding protein; Abf1p >gi|320637|pir||S29870
DNA-binding protein BAF1 - yeast (Saccharomyces
cerevisiae) >gi|486187|emb|CAA81951| (Z28111) ORF
YKL112w [Saccharomyces cerevisiae]
>gi|1680183|gb||S93804_2 (S93804) ARS-binding factor I
[Saccharomyces cerevisiae]
Length = 731
Score = 36.0 bits (81), Expect = 0.45
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 30/164 (18%)
Query: 168 GLKRLDELPPLSDLKDIGELEPQLP--LHNNHRH----------TAQLQIQTDQTPNRSI 215
G K+ L D+ + E + + P L N+HR+ ++ N +
Sbjct: 26 GGKKFPTLGAWYDVINEYEFQTRCPIILKNSHRNKHFTFACHLKNCPFKVLLSYAGNAAS 85
Query: 216 SGTTAPISGISPQP--TQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHN 273
S T++P + + P T + N+ + DN+ S + ++D D +T DLE H
Sbjct: 86 SETSSPSANNNTNPPGTPDHIHHHSNNMNNEDNDNNNGSNNKVSNDSKLDFVTDDLEYHL 145
Query: 274 TSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
N H D+T +K + + ++ ++ DAD
Sbjct: 146 A----------------NTHPDDTNDKVESRSNEVNGNNDDDAD 173
>gi|1077300|pir||S51848 hypothetical protein HRD1054 - yeast
(Saccharomyces cerevisiae) >gi|663232|emb|CAA88141|
(Z48148) Similarity with S. cerevisiae hypothetical 137.7
kD protein in subtelomeric Y' repeat region
[Saccharomyces cerevisiae]
Length = 1504
Score = 36.0 bits (81), Expect = 0.45
Identities = 23/110 (20%), Positives = 49/110 (43%), Gaps = 1/110 (0%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
N A T+ T N S + TT + + T + + +T+ T + T++ +T
Sbjct: 908 NASTNATTNASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATT 967
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTA 304
++++ +T+ T + N NTS + + E +++ + T+TA
Sbjct: 968 TESTNSSTNATTTESTNSNTSATTTASINVRTSATTTESTNSSTSATTTA 1017
Score = 33.6 bits (75), Expect = 2.3
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPS-TDNQTSDRATDLI 265
T ++ N + S TT + T +T++ T+ T + N + S T ++ + +T+
Sbjct: 979 TTESTNSNTSATTTASINVRTSATTTESTNSSTSATTTASINVRTSATTTKSINSSTNAT 1038
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTST 303
T + N NT+ E ++ E +++ N T+T
Sbjct: 1039 TTESTNSNTNATTTESTNSSTNATTTESTNSSTNATTT 1076
>gi|6320526|ref|NP_010606.1|YDR320C| Ydr320cp
>gi|2131428|pir||S59786 hypothetical protein YDR320c -
yeast (Saccharomyces cerevisiae) >gi|914999 (U32517)
Ydr320cp [Saccharomyces cerevisiae]
Length = 668
Score = 36.0 bits (81), Expect = 0.45
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 206 QTDQTPNRSISGTTAPISGISP--QPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATD 263
Q + +PNR + + + P P Q++ TD +T I DIT P + +S T
Sbjct: 260 QVNDSPNRILFEDNEVVENLPPADNPDQDLLTDFETKI--DITKRTAPDVSHSSS--PTS 315
Query: 264 LITIDLENHNTSPF---PLEDVPDNSVTPPNEHEDNTI-NKTSTADHYI 308
I I+ + P L D + ++T +ED+T+ N+ S D I
Sbjct: 316 GILIEENSRRNEPLIEDSLLDFSEGNLTNSKSNEDSTLFNENSNTDSTI 364
>gi|6322237|ref|NP_012311.1|YJL225C| Yjl225cp
>gi|1176490|sp|P40889|YJW5_YEAST HYPOTHETICAL 197.6 KD
PROTEIN IN FSP2 5'REGION >gi|1078293|pir||S57015 probable
purine nucleotide-binding protein YJL225c - yeast
(Saccharomyces cerevisiae) >gi|1017444|emb|CAA89522|
(Z49500) ORF YJL225c [Saccharomyces cerevisiae]
Length = 1758
Score = 36.0 bits (81), Expect = 0.45
Identities = 23/110 (20%), Positives = 49/110 (43%), Gaps = 1/110 (0%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
N A T+ T N S + TT + + T + + +T+ T + T++ +T
Sbjct: 1162 NASTNATTNASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATT 1221
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTA 304
++++ +T+ T + N NTS + + E +++ + T+TA
Sbjct: 1222 TESTNSSTNATTTESTNSNTSATTTASINVRTSATTTESTNSSTSATTTA 1271
Score = 33.6 bits (75), Expect = 2.3
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPS-TDNQTSDRATDLI 265
T ++ N + S TT + T +T++ T+ T + N + S T ++ + +T+
Sbjct: 1233 TTESTNSNTSATTTASINVRTSATTTESTNSSTSATTTASINVRTSATTTKSINSSTNAT 1292
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTST 303
T + N NT+ E ++ E +++ N T+T
Sbjct: 1293 TTESTNSNTNATTTESTNSSTNATTTESTNSSTNATTT 1330
>gi|6425393|emb|CAB60506.1| (AL132860) predicted using Genefinder
[Caenorhabditis elegans]
Length = 767
Score = 36.0 bits (81), Expect = 0.45
Identities = 34/131 (25%), Positives = 46/131 (34%), Gaps = 27/131 (20%)
Query: 208 DQTPNRSISGTTA----PISGISPQP--------------TQEVNTDTQTNIATDITDND 249
DQ PN +T P+ S QP T + +TD N+ +D
Sbjct: 358 DQNPNSDNLESTIDVGEPLRNTSDQPSPDPCSDVQIGVNSTTKQSTDPSVNVQLGHKSSD 417
Query: 250 QPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYID 309
QPSTD + D TI P D N N + N+ + +S
Sbjct: 418 QPSTDPSAHAQLEDNCTIQ---------PSTDPSSNDQLGDNTSDQNSTDPSSDVPMEDP 468
Query: 310 SDSQSDADTPP 320
+S S A TPP
Sbjct: 469 GESGSAASTPP 479
>gi|6322017|ref|NP_012092.1|YIL177C| Yil177cp
>gi|731903|sp|P40434|YIR7_YEAST HYPOTHETICAL 197.5 KD
PROTEIN IN SDL1 5'REGION >gi|1077762|pir||S50349 probable
purine nucleotide-binding protein YIL177c - yeast
(Saccharomyces cerevisiae) >gi|600799|emb|CAA87015|
(Z46921) unknown [Saccharomyces cerevisiae]
Length = 1758
Score = 36.0 bits (81), Expect = 0.45
Identities = 23/110 (20%), Positives = 49/110 (43%), Gaps = 1/110 (0%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTD 254
N A T+ T N S + TT + + T + + +T+ T + T++ +T
Sbjct: 1162 NASTNATTNASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATT 1221
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTA 304
++++ +T+ T + N NTS + + E +++ + T+TA
Sbjct: 1222 TESTNSSTNATTTESTNSNTSATTTASINVRTSATTTESTNSSTSATTTA 1271
Score = 33.6 bits (75), Expect = 2.3
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPS-TDNQTSDRATDLI 265
T ++ N + S TT + T +T++ T+ T + N + S T ++ + +T+
Sbjct: 1233 TTESTNSNTSATTTASINVRTSATTTESTNSSTSATTTASINVRTSATTTKSINSSTNAT 1292
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTST 303
T + N NT+ E ++ E +++ N T+T
Sbjct: 1293 TTESTNSNTNATTTESTNSSTNATTTESTNSSTNATTT 1330
>gi|5360963|emb|CAA66706.1| (X98082) RADHA protein [Drosophila
melanogaster] >gi|5420153|emb|CAA66705.1| (X98081) RADHA
protein [Drosophila melanogaster]
Length = 1332
Score = 35.6 bits (80), Expect = 0.60
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 65 SVELVEVASGFRFQLKADVHAWVTPLWTERK-----TKYSRATLETLALIAYRQPITRGE 119
S E E+AS QL D V + + K T R + E+ LI TR
Sbjct: 436 SEETDEIASNVMKQLANDSETEVIEMKSNTKNSKHNTSPQRKSQESKKLIRESSRNTRNS 495
Query: 120 IEQIRGV-AVNSNIIHTLEER--EWIRVVGHRDAPGKPALFGTT-------KAFLDYFG- 168
+E ++ V + S + LEE+ E I + A +L T KA L+ G
Sbjct: 496 LENLQNVDELTSLDLFELEEKRQEKIAELERIKAGQSESLLQTELKVKKHKKADLELQGK 555
Query: 169 ---LKRLDELPPLS----------DLKDIGELEPQLPLHNNHRHTAQLQIQTDQTPNRSI 215
L+ ++E+PP S +L ++ +++ LP+ NN +++Q + + N +
Sbjct: 556 KSQLETINEVPPKSLRKSKPVSQSELNNVPKIQENLPILNNQTKGSRIQKENCEENNEDL 615
Query: 216 SGTTA-------------PISGISPQPTQEVNTDTQTNIA 242
S + P + + +P + V+TD +T+I+
Sbjct: 616 SYALSEEHSSSNEKLDKKPGASKTMRPPEHVDTDLETDIS 655
>gi|1326266 (U58728) C54H2.3 gene product [Caenorhabditis elegans]
Length = 430
Score = 35.6 bits (80), Expect = 0.60
Identities = 29/127 (22%), Positives = 58/127 (44%), Gaps = 11/127 (8%)
Query: 183 DIGELEPQLPLHNNHRHTA--QLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTN 240
DI +P+ P+ + ++I+ +TP +S S T P S + + T+ + D +++
Sbjct: 120 DIASEKPRTPVPEKQEEVSVENVEIEKCETPTKSKSATAKPPS--AKKLTKRTDEDKKSS 177
Query: 241 IATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFP---LEDVPDNSVTPPNEHEDNT 297
+AT + S + S+ T+L+ + N P P + V +S+T + +T
Sbjct: 178 VATKKAKTTEESVPHIESNVNTELV----KEENKKPTPEDSIGPVSSDSLTTNQGEDQST 233
Query: 298 INKTSTA 304
ST+
Sbjct: 234 AQTASTS 240
>gi|6006448|emb|CAB56789.1| (X59800) IgA1 protease [Haemophilus
influenzae]
Length = 1694
Score = 35.6 bits (80), Expect = 0.60
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N+ Q Q+QT T+A +S P P +NT + T I +D+P T+
Sbjct: 1260 NNAEEVQAQLQTQ---------TSATVSTKQPAPENSINTGSATAITETAEKSDKPQTET 1310
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHED 295
S T D H + V DNSV +E D
Sbjct: 1311 AAS-------TEDASQHKAN-----TVADNSVANNSESSD 1338
>gi|1170513|sp|P44969|IGA0_HAEIN IMMUNOGLOBULIN A1 PROTEASE PRECURSOR
(IGA1 PROTEASE) >gi|1074920|pir||H64106 IgA-specific
metalloendopeptidase (EC 3.4.24.13) type 1 - Haemophilus
influenzae >gi|1574019 (U32779) immunoglobin A1 protease
(iga1) [Haemophilus influenzae Rd]
Length = 1694
Score = 35.6 bits (80), Expect = 0.60
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N+ Q Q+QT T+A +S P P +NT + T I +D+P T+
Sbjct: 1260 NNAEEVQAQLQTQ---------TSATVSTKQPAPENSINTGSATAITETAEKSDKPQTET 1310
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHED 295
S T D H + V DNSV +E D
Sbjct: 1311 AAS-------TEDASQHKAN-----TVADNSVANNSESSD 1338
>gi|114814|sp|P14164|BAF1_YEAST TRANSCRIPTION FACTOR BAF1 (ARS
BINDING FACTOR 1) (PROTEIN ABF1) (BIDIRECTIONALLY ACTING
FACTOR) (SFB-B) (DNA REPLICATION ENHANCER-BINDING
PROTEIN OBF1) >gi|58415|emb|CAA35966| (X51654)
ARS-binding protein 1 [Saccharomyces cerevisiae]
>gi|170968 (M29067) ARS binding factor 1 [Saccharomyces
cerevisiae] >gi|172058 (M63578) OBF1 [Saccharomyces
cerevisiae] >gi|226720|prf||1604243A ARS binding factor
I [Saccharomyces cerevisiae]
Length = 731
Score = 35.6 bits (80), Expect = 0.60
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 30/164 (18%)
Query: 168 GLKRLDELPPLSDLKDIGELEPQLP--LHNNHRH----------TAQLQIQTDQTPNRSI 215
G K+ L D+ + E + + P L N+HR+ ++ N +
Sbjct: 26 GGKKFPTLGAWYDVINEYEFQTRCPIILKNSHRNKHFTFACHLKNCPFKVLLSYAGNAAS 85
Query: 216 SGTTAPISGISPQP--TQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHN 273
S T++P + + P T + N+ + DN+ S + ++D D +T DLE H
Sbjct: 86 SETSSPSANNNTNPPGTPDHIHHHSNNMNNEDNDNNNGSNNKASNDSKLDFVTDDLEYHL 145
Query: 274 TSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
N H D+T +K + + ++ ++ DAD
Sbjct: 146 A----------------NIHPDDTNDKVESRSNEVNGNNDDDAD 173
>gi|3413|emb|CAA34421| (X16385) Baf1 protein (AA 1-731)
[Saccharomyces cerevisiae]
Length = 731
Score = 35.6 bits (80), Expect = 0.60
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 30/164 (18%)
Query: 168 GLKRLDELPPLSDLKDIGELEPQLP--LHNNHRH----------TAQLQIQTDQTPNRSI 215
G K+ L D+ + E + + P L N+HR+ ++ N +
Sbjct: 26 GGKKFPTLGAWYDVINEYEFQTRCPIILKNSHRNKHFTFACHLKNCPFKVLLSYAGNAAS 85
Query: 216 SGTTAPISGISPQP--TQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHN 273
S T++P + + P T + N+ + DN+ S + ++D D +T DLE H
Sbjct: 86 SETSSPSANNNTNPPGTPDHIHHHSNNMNNEDNDNNNGSKNKVSNDSKLDFVTDDLEYHL 145
Query: 274 TSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
N H D+T +K + + ++ ++ DAD
Sbjct: 146 A----------------NTHPDDTNDKVESRSNEVNGNNDDDAD 173
>gi|113005|sp|P22620|ABRA_PLAFC 101 KD MALARIA ANTIGEN (P101)
(ACIDIC BASIC REPEAT ANTIGEN) >gi|102315|pir||A29232
101K malaria antigen precursor - Plasmodium falciparum
(strain Camp) >gi|160047 (J03902) p101/acidic basic
repeat antigen [Plasmodium falciparum]
Length = 743
Score = 35.2 bits (79), Expect = 0.78
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 231 QEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPP 290
++ N D TN D D++ + D T+D D EN+N + + L VP N V
Sbjct: 236 EDTNDDEDTNDEEDTNDDEDTNDDEDTNDEEDTNDEEDHENNNATAYELGIVPVNDVLNV 295
Query: 291 N 291
N
Sbjct: 296 N 296
>gi|6319339|ref|NP_009422.1|OSH1| Shows homology to the human
oxysterol binding protein (OSBP); Osh1p
>gi|548437|sp|P35845|OSH1_YEAST OSH1 PROTEIN
>gi|1078479|pir||S53463 SWH1 protein (version 1) - yeast
(Saccharomyces cerevisiae) >gi|456143 (L28920) Osh1p
[Saccharomyces cerevisiae]
Length = 859
Score = 35.2 bits (79), Expect = 0.78
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 234 NTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNS---VTPP 290
N D TN + ++ND +N ++ D D P PL S +TP
Sbjct: 109 NDDDSTNNNNNKSNNDYDDNNNNNNNDDDDYDDDDESRPLIEPLPLISSRSQSLSEITPG 168
Query: 291 NEHEDNTINKTSTADHYIDSDSQSDADTPPDG 322
+T++ T AD D + S+ D+ DG
Sbjct: 169 PHSRKSTVSSTRAADIPSDDEGYSEDDSDDDG 200
>gi|113007|sp|P23745|ABRA_PLAFG 101 KD MALARIA ANTIGEN (P101)
(ACIDIC BASIC REPEAT ANTIGEN)
Length = 600
Score = 35.2 bits (79), Expect = 0.78
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 231 QEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPP 290
++ N D TN D D++ + D T+D D EN+N + + L VP N V
Sbjct: 153 EDTNDDEDTNDEEDTNDDEDTNDDEDTNDEEDTNDEEDHENNNATAYELGIVPVNDVLNV 212
Query: 291 N 291
N
Sbjct: 213 N 213
>gi|6322611|ref|NP_012685.1|YJR151C| Yjr151cp
>gi|1352944|sp|P47179|YJ9P_YEAST HYPOTHETICAL 118.4 KD
PROTEIN IN BAT2-DAL5 INTERGENIC REGION PRECURSOR
>gi|1078284|pir||S57180 probable membrane protein
YJR151c - yeast (Saccharomyces cerevisiae)
>gi|1015903|emb|CAA89684| (Z49651) ORF YJR151c
[Saccharomyces cerevisiae]
Length = 1161
Score = 35.2 bits (79), Expect = 0.78
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
T TP S + TT S S PT + T T T T ++ T+ + T
Sbjct: 149 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPT 208
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
+ + P S TP +T ++TST + S S T
Sbjct: 209 TSTTSTTPTTSTTSTTPTTSTTPTTS-TTSTTSQTSTKSTTPTTSSTSTTPT 259
Score = 33.2 bits (74), Expect = 3.0
Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
T TP S + TT S S PT + T T T T ST +QTS ++T T
Sbjct: 194 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTT--STTSQTSTKSTTPTT 251
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
P S TP T + TSTA + + S T
Sbjct: 252 SSTST----------TPTTSTTP-------TTSTTSTAPTTSTTSTTSTTST 286
Score = 32.8 bits (73), Expect = 3.9
Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
T TP S + TT+ S S PT + T T T T + T+ + T
Sbjct: 227 TSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTTSTTST 286
Query: 267 IDL--------ENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTA--DHYIDSDSQSDA 316
I +TS V + T T TSTA DH S S ++A
Sbjct: 287 ISTAPTTSTTSSTFSTSSASASSVISTTATTSTTFASLTTPATSTASTDHTTSSVSTTNA 346
Query: 317 DT 318
T
Sbjct: 347 FT 348
Score = 32.1 bits (71), Expect = 6.8
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 8/119 (6%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
T TP S + TT S S PT + T T T T ST + T +T T
Sbjct: 158 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTT--STTSTTPTTSTTSTT 215
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDN-----TINKTSTADHYIDSDSQSDADTPP 320
+T+P P S T T + TST + + S T P
Sbjct: 216 PTTSTTSTTP-TTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAP 273
>gi|1762996 (U67259) RING-finger protein [Helicoverpa armigera
nucleopolyhedrovirus]
Length = 348
Score = 35.2 bits (79), Expect = 0.78
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 5/93 (5%)
Query: 225 ISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPD 284
I + T E+NT+T N DND +N D D D ++ + + + D D
Sbjct: 145 IHNEDTAELNTNTVNNDIETTVDNDASVNNNTNVDDQNDDNVDDDDDDDVNDDDVNDNDD 204
Query: 285 NSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
+ N + +N IN T+ D+D+ DA+
Sbjct: 205 VNDVNTNVNSNNQINNTTN-----DNDTNVDAN 232
>gi|1763000 (U67261) RING-finger protein [Helicoverpa armigera
nucleopolyhedrovirus]
Length = 354
Score = 35.2 bits (79), Expect = 0.78
Identities = 26/93 (27%), Positives = 41/93 (43%), Gaps = 8/93 (8%)
Query: 225 ISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPD 284
I + T E+NT+T N DND +N D D D ++ + + + D D
Sbjct: 145 IHNEDTAELNTNTVNNDIETTVDNDASVNNNTNVDNVDD---DDDDDDDVNDDDVNDNDD 201
Query: 285 NSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
+ N + DN IN T+ D+D+ DA+
Sbjct: 202 VNDVNTNVNSDNQINNTTN-----DNDTNVDAN 229
>gi|2135766|pir||S53362 mucin 5AC (clone JER47) - human (fragment)
Length = 477
Score = 35.2 bits (79), Expect = 0.78
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 206 QTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLI 265
QT T + S T+AP + + PT + QT+I++ T + + + T RAT I
Sbjct: 171 QTSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTTSTTSAPTSSTISRATTSI 230
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTST 303
I +T+ FP S T + T + TST
Sbjct: 231 -ISAPTTSTTSFPTTST--TSATTTSTTSAPTTSTTST 265
>gi|4490665|emb|CAB38690.1| (AL035675) hypothetical protein.
[Schizosaccharomyces pombe]
Length = 743
Score = 35.2 bits (79), Expect = 0.78
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 200 TAQLQIQTDQTPNRSISGTTAPISGISPQPT-QEVNTDTQTNIATDITDNDQPSTDNQTS 258
++ L +++ Q P S + + AP +P PT N ++ TN AT + +PS
Sbjct: 601 SSPLDVRSKQKP--SSANSNAP----TPAPTVNTTNPESSTNEATSVGPALEPSQGANVH 654
Query: 259 DRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
++L +N N S + PD S TP E T+ S+ + +D + +D D
Sbjct: 655 KSDSEL-----DNQNQSG---KSNPDTSATPSAPTESTTVATKSSDNQLLDVGNSTDID 705
>gi|548937|sp|Q06852|SLP1_CLOTM CELL SURFACE GLYCOPROTEIN 1 PRECURSOR
(OUTER LAYER PROTEIN B) (S-LAYER PROTEIN 1)
>gi|296881|emb|CAA47841| (X67506) S-layer protein
[Clostridium thermocellum]
Length = 1664
Score = 34.8 bits (78), Expect = 1.0
Identities = 23/116 (19%), Positives = 48/116 (40%), Gaps = 1/116 (0%)
Query: 206 QTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLI 265
+T + P + + + P P P+ E + + + T +D+P+ ++ + T
Sbjct: 939 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 998
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
I + + P P D P S P E ++ + +D SD + ++TP +
Sbjct: 999 PIPTDTPSDEPTP-SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 1053
Score = 34.8 bits (78), Expect = 1.0
Identities = 23/116 (19%), Positives = 48/116 (40%), Gaps = 1/116 (0%)
Query: 206 QTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLI 265
+T + P + + + P P P+ E + + + T +D+P+ ++ + T
Sbjct: 1264 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 1323
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
I + + P P D P S P E ++ + +D SD + ++TP +
Sbjct: 1324 PIPTDTPSDEPTP-SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 1378
Score = 32.5 bits (72), Expect = 5.2
Identities = 25/132 (18%), Positives = 51/132 (37%), Gaps = 12/132 (9%)
Query: 206 QTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLI 265
+T + P + + + P P P+ E + + + T +D+P+ ++ + T
Sbjct: 994 ETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 1053
Query: 266 TIDLENHNTSPFPLED-------VPDNSVTP-----PNEHEDNTINKTSTADHYIDSDSQ 313
I + + P P ++ P + TP P+E + I + +D SD
Sbjct: 1054 PIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1113
Query: 314 SDADTPPDGAYP 325
+ +D P P
Sbjct: 1114 TPSDEPTPSDEP 1125
Score = 31.7 bits (70), Expect = 8.9
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 226 SPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDN 285
S P + + TDT ++ T +D PS + SD T P P D P +
Sbjct: 895 SETPEEPIPTDTPSDEPTP-SDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPT-DTPSD 952
Query: 286 SVTPPNE----HEDNTINKTSTADHYIDSDSQSDADTPPDGAYPHE 327
TP +E E ++ + +D SD + +D P P E
Sbjct: 953 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 998
Score = 31.7 bits (70), Expect = 8.9
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 226 SPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDN 285
S P + + TDT ++ T +D PS + SD T P P D P +
Sbjct: 1220 SETPEEPIPTDTPSDEPTP-SDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPT-DTPSD 1277
Query: 286 SVTPPNE----HEDNTINKTSTADHYIDSDSQSDADTPPDGAYPHE 327
TP +E E ++ + +D SD + +D P P E
Sbjct: 1278 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 1323
>gi|295616 (M24378) IRA1 [Saccharomyces cerevisiae]
Length = 2938
Score = 34.8 bits (78), Expect = 1.0
Identities = 34/137 (24%), Positives = 61/137 (43%), Gaps = 20/137 (14%)
Query: 201 AQLQIQTDQTPNRSISGTTAPISG------ISPQPTQ--EVNTDTQTNIATDITDNDQPS 252
+Q D +P ++ ++P++ +SP + + NT T T AT TD D PS
Sbjct: 259 SQFSTGNDASPTSPMASLSSPLNTNILGYPLSPITSTLGQANTSTSTTAATTKTDADTPS 318
Query: 253 T----DNQTSDRATDLITI--------DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINK 300
T +N ++ + +L I D+ + N+S L NS+ + + + +
Sbjct: 319 TMNTNNNNNNNNSANLNNIPQRIFSLDDISSFNSSRKSLNLDDSNSLFLWDTSQHSNASM 378
Query: 301 TSTADHYIDSDSQSDAD 317
T+T H ++SQS D
Sbjct: 379 TNTNMHAGVNNSQSQND 395
>gi|547576|emb|CAA55537| (X78937) IRA1 [Saccharomyces cerevisiae]
Length = 2777
Score = 34.8 bits (78), Expect = 1.0
Identities = 34/137 (24%), Positives = 61/137 (43%), Gaps = 20/137 (14%)
Query: 201 AQLQIQTDQTPNRSISGTTAPISG------ISPQPTQ--EVNTDTQTNIATDITDNDQPS 252
+Q D +P ++ ++P++ +SP + + NT T T AT TD D PS
Sbjct: 413 SQFSTGNDASPTSPMASLSSPLNTNILGYPLSPITSTLGQANTSTSTTAATTKTDADTPS 472
Query: 253 T----DNQTSDRATDLITI--------DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINK 300
T +N ++ + +L I D+ + N+S L NS+ + + + +
Sbjct: 473 TMNTNNNNNNNNSANLNNIPQRIFSLDDISSFNSSRKSLNLDDSNSLFLWDTSQHSNASM 532
Query: 301 TSTADHYIDSDSQSDAD 317
T+T H ++SQS D
Sbjct: 533 TNTNMHAGVNNSQSQND 549
>gi|2120068|pir||S69983 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.P
Length = 1756
Score = 34.8 bits (78), Expect = 1.0
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLIT 266
++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTDN + ++T
Sbjct: 367 EKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTDNDSISKST---- 421
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
T P L + D + P + ++T+N T+ +D
Sbjct: 422 -------TEPIQLNNKHDLHLRP--KLTESTVNHTNHSD 451
>gi|6322945|ref|NP_013018.1|SRP40| nucleolar protein that is
immunologically and structurally related to rat Nopp140,
a nonribosomal protein of the nucleolus and coiled
bodies.; Srp40p >gi|548976|sp|P32583|SR40_YEAST
SUPPRESSOR PROTEIN SRP40 >gi|539364|pir||S38170 SRP40
protein - yeast (Saccharomyces cerevisiae)
>gi|450552|emb|CAA51946| (X73541) ORF YKR412
[Saccharomyces cerevisiae] >gi|486581|emb|CAA82171|
(Z28317) ORF YKR092c [Saccharomyces cerevisiae]
Length = 406
Score = 34.8 bits (78), Expect = 1.0
Identities = 23/101 (22%), Positives = 51/101 (49%), Gaps = 1/101 (0%)
Query: 219 TAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFP 278
T P S S + + ++ + + + +D+D S+ + +SD +D + + ++S
Sbjct: 146 TEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSD 205
Query: 279 LEDVPDNSVTPPNEHEDNTINKTSTA-DHYIDSDSQSDADT 318
D+S + + D++ + +S++ D DSDS SD+D+
Sbjct: 206 SSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDS 246
>gi|995765 (U33442) mucin [Rattus norvegicus]
Length = 309
Score = 34.8 bits (78), Expect = 1.0
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 211 PNRSISGTTAPISGISPQPTQEVNTDTQTNIATD--ITDNDQPS-TDNQTSDRATDLITI 267
PN+ ++ +P T + TD+ T T TD+ P+ T T+D T T
Sbjct: 105 PNKQLTSDKIETKVTTPAQTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTT 164
Query: 268 DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
+T+P P +S TP ++ T + T +DS + A T
Sbjct: 165 KPTTDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAPTTKPTADSTTPAPT 215
Score = 34.8 bits (78), Expect = 1.0
Identities = 31/113 (27%), Positives = 49/113 (42%), Gaps = 4/113 (3%)
Query: 210 TPNRSISGTTAPIS-GISPQPTQEVNTDTQTNIATD--ITDNDQPSTDNQ-TSDRATDLI 265
T + + + TT P + +P PT + TD+ T T TD+ P+ N+ T+D T
Sbjct: 142 TDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAP 201
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT 318
T +T+P P +S TP + T + T +DS + A T
Sbjct: 202 TTKPTADSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPT 254
Score = 32.5 bits (72), Expect = 5.2
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 210 TPNRSISGTTAPIS-GISPQPTQEVNTDTQTNIATD--ITDNDQPS-TDNQTSDRATDLI 265
T + + + TT P + +P PT + TD+ T T D+ P+ T T+D T
Sbjct: 168 TDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAPTTKPTADSTTPAPTTKPTTDSTTPAP 227
Query: 266 TIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTA 304
T +T+P P +S TP + T K ST+
Sbjct: 228 TTKPTTDSTTPAPTTKPTTDSTTPAPTTKIPTTPKPSTS 266
>gi|295671 (L11275) selected as a weak suppressor of a mutant of the
subunit AC40 of DNA dependant RNA polymerase I and III
[Saccharomyces cerevisiae]
Length = 406
Score = 34.8 bits (78), Expect = 1.0
Identities = 23/101 (22%), Positives = 51/101 (49%), Gaps = 1/101 (0%)
Query: 219 TAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFP 278
T P S S + + ++ + + + +D+D S+ + +SD +D + + ++S
Sbjct: 146 TEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSD 205
Query: 279 LEDVPDNSVTPPNEHEDNTINKTSTA-DHYIDSDSQSDADT 318
D+S + + D++ + +S++ D DSDS SD+D+
Sbjct: 206 SSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDS 246
>gi|3599670|dbj|BAA33143| (AB009080) TRFA [Dictyostelium discoideum]
Length = 1390
Score = 34.8 bits (78), Expect = 1.0
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 6/155 (3%)
Query: 170 KRLDELPPLSDLKDIGELEPQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQP 229
K+L + P + + E + L + + ++ + ++ T + S + PI P
Sbjct: 1133 KKLSSVSPTTTAVEQSRDETK-ELEMDTKEDSEKEKKSSTTTTAAASESVKPIDEEKKSP 1191
Query: 230 TQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTP 289
T T T T + + S ++ T+ T T ++ N+SP ++V V P
Sbjct: 1192 TTTTTTTTNTTTVEPTHKDKESSKNDDTTTTTTTTTTKSAKSPNSSPTRSDEV----VEP 1247
Query: 290 PNEHEDNTINKTSTADHYIDSDSQS-DADTPPDGA 323
+ INK D + S+ D+ P A
Sbjct: 1248 HQDASQEEINKRKLEDDITSTPSKRLKPDSTPSSA 1282
>gi|6319616|ref|NP_009698.1|IRA1| GTPase activating protein; Ira1p
>gi|585325|sp|P18963|IRA1_YEAST INHIBITORY REGULATOR
PROTEIN IRA1 >gi|626168|pir||S46009 GTPase-activating
protein IRA1 - yeast (Saccharomyces cerevisiae)
>gi|536438|emb|CAA85098| (Z36009) ORF YBR140c
[Saccharomyces cerevisiae]
Length = 3092
Score = 34.8 bits (78), Expect = 1.0
Identities = 34/137 (24%), Positives = 61/137 (43%), Gaps = 20/137 (14%)
Query: 201 AQLQIQTDQTPNRSISGTTAPISG------ISPQPTQ--EVNTDTQTNIATDITDNDQPS 252
+Q D +P ++ ++P++ +SP + + NT T T AT TD D PS
Sbjct: 413 SQFSTGNDASPTSPMASLSSPLNTNILGYPLSPITSTLGQANTSTSTTAATTKTDADTPS 472
Query: 253 T----DNQTSDRATDLITI--------DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINK 300
T +N ++ + +L I D+ + N+S L NS+ + + + +
Sbjct: 473 TMNTNNNNNNNNSANLNNIPQRIFSLDDISSFNSSRKSLNLDDSNSLFLWDTSQHSNASM 532
Query: 301 TSTADHYIDSDSQSDAD 317
T+T H ++SQS D
Sbjct: 533 TNTNMHAGVNNSQSQND 549
>gi|484370|pir||JN0598 DNA topoisomerase (ATP-hydrolyzing) (EC
5.99.1.3) - rat >gi|57964|emb|CAA79611| (Z19552) DNA
topoisomerase II [Rattus norvegicus]
Length = 1526
Score = 34.4 bits (77), Expect = 1.3
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 206 QTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRAT--- 262
Q + R+ TT P I Q +D++++++++ ++ D P + + AT
Sbjct: 1262 QKREPGTRAKKQTTLPFKPIKKAQKQNPWSDSESDMSSNESNFDVPPREKEPRIAATKAK 1321
Query: 263 ---------DLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQ 313
D +D ++ + FPL+D P + PP + + S+ ++SD +
Sbjct: 1322 FTADLDSDDDFSGLDEKDEDEDFFPLDDTPPKTKMPPKNTKKALKPQKSSTSVDLESDGK 1381
Query: 314 SDADTPP 320
P
Sbjct: 1382 DSVPASP 1388
>gi|6321952|ref|NP_012028.1|KEL1| involved in cell fusion and
morphology; contains six Kelch repeats; Kel1p
>gi|731732|sp|P38853|YHV8_YEAST HYPOTHETICAL 131.1 KD
PROTEIN IN REC104-SOL3 INTERGENIC REGION
>gi|626671|pir||S46769 hypothetical protein YHR158c -
yeast (Saccharomyces cerevisiae) >gi|500665 (U10397)
Yhr158cp [Saccharomyces cerevisiae]
Length = 1164
Score = 34.4 bits (77), Expect = 1.3
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 9/132 (6%)
Query: 192 PLHNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQP 251
P+++ A+ I T P+ S I+ P T + + D+++ P
Sbjct: 534 PVNSESHLIAEPNILTPYVPSESSQTPVMKITSNKPFDTPTIQKEP------DLSETMDP 587
Query: 252 STDNQT--SDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYID 309
+ NQ S D +T + N SP LE +P N + P I AD ID
Sbjct: 588 TVGNQRIPSSIYGDNLTPANQIKNNSPI-LETLPSNEIKTPQNGNIEEIKHLPDADEKID 646
Query: 310 SDSQSDADTPPD 321
S + D + D
Sbjct: 647 STTTFDQEINGD 658
>gi|1174742|sp|P41516|TP2A_RAT DNA TOPOISOMERASE II, ALPHA
>gi|587515|emb|CAA86496| (Z46372) DNA topoisomerase II
[Rattus norvegicus]
Length = 1526
Score = 34.4 bits (77), Expect = 1.3
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 206 QTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRAT--- 262
Q + R+ TT P I Q +D++++++++ ++ D P + + AT
Sbjct: 1262 QKREPGTRAKKQTTLPFKPIKKAQKQNPWSDSESDMSSNESNFDVPPREKEPRIAATKAK 1321
Query: 263 ---------DLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQ 313
D +D ++ + FPL+D P + PP + + S+ ++SD +
Sbjct: 1322 FTADLDSDDDFSGLDEKDEDEDFFPLDDTPPKTKMPPKNTKKALKPQKSSTSVDLESDGK 1381
Query: 314 SDADTPP 320
P
Sbjct: 1382 DSVPASP 1388
>gi|6320985|ref|NP_011064.1|YER138C| transposon Ty putative peptide
with frame shift; Yer138cp >gi|1072504|pir||S50641 TyB
protein YER138c - yeast (Saccharomyces cerevisiae)
retrotransposon Ty >gi|603378 (U18917) transposon Ty
putative with frame shift at 5704-5706 [Saccharomyces
cerevisiae]
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|729317|sp|P39653|DEXT_STRDO DEXTRANASE PRECURSOR
(ALPHA-1,6-GLUCAN-6-GLUCANOHYDROLASE) >gi|450641 (M96978)
dextranase [Streptococcus sobrinus]
Length = 1337
Score = 34.4 bits (77), Expect = 1.3
Identities = 35/128 (27%), Positives = 50/128 (38%), Gaps = 23/128 (17%)
Query: 207 TDQTPNRS-ISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTD-NQTSDRATDL 264
TD+ P + AP + +P+ N D Q N A D N D N+ + +T
Sbjct: 1106 TDKAPEAGQVDSDKAP----TVKPSTPENNDNQPNNANDADKNKTNEADSNKANQDSTKG 1161
Query: 265 ITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHY-------------IDSD 311
+ D +T+P ED PDNS E + + N T T+D +D
Sbjct: 1162 SSADQSGKSTTP---EDGPDNSSPEDPETKPSDPN-TDTSDQEQVKPSLPVVPNQTVDDP 1217
Query: 312 SQSDADTP 319
D DTP
Sbjct: 1218 KTDDTDTP 1225
Score = 32.8 bits (73), Expect = 3.9
Identities = 23/87 (26%), Positives = 35/87 (39%), Gaps = 5/87 (5%)
Query: 236 DTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHED 295
+T++ + D + P SD+A + EN++ P D N NE +
Sbjct: 1095 ETKSEVTPDSGTDKAPEAGQVDSDKAPTVKPSTPENNDNQPNNANDADKNKT---NEADS 1151
Query: 296 NTINKTSTADHYIDSDSQSDADTPPDG 322
N N+ ST D +S TP DG
Sbjct: 1152 NKANQDSTKGSSADQSGKS--TTPEDG 1176
>gi|6322487|ref|NP_012560.1|YJR027W| Yjr027wp
>gi|1078438|pir||S57045 TyB protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty1.JR
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|2120066|pir||S69838 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.GR1
>gi|1323003|emb|CAA97014| (Z72813) TY1B [Saccharomyces
cerevisiae] >gi|1325964|emb|CAA97012| (Z72812) TY1B
[Saccharomyces cerevisiae]
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|2120065|pir||S69979 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.P
>gi|1370529|emb|CAA97984| (Z73613) TY1B [Saccharomyces
cerevisiae] >gi|1370534|emb|CAA97988| (Z73614) TY1B
[Saccharomyces cerevisiae]
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|2120064|pir||S69975 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.O
>gi|1419960|emb|CAA99118| (Z74845) TY1B [Saccharomyces
cerevisiae] >gi|1419965|emb|CAA99122| (Z74846) TY1B
[Saccharomyces cerevisiae]
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|1762998 (U67260) RING-finger protein [Helicoverpa armigera
nucleopolyhedrovirus]
Length = 357
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 7/95 (7%)
Query: 225 ISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPD 284
I + T E+NT+T N DND +N D + D N N +DV D
Sbjct: 145 IHNEDTAELNTNTVNNDIETTVDNDASVNNNTNVDDQNNDDDDDDVNDNDDVNDNDDVND 204
Query: 285 NSVTP--PNEHEDNTINKTSTADHYIDSDSQSDAD 317
+ V N + DN I T+ D+D+ DA+
Sbjct: 205 DDVNDVNTNVNSDNQITNTTN-----DNDTNVDAN 234
>gi|1763002 (U67262) RING-finger protein [Helicoverpa armigera
nucleopolyhedrovirus]
Length = 352
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 225 ISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPD 284
I + T E+NT+T N DND +N D D T D+++ + +DV D
Sbjct: 145 IHNEDTAELNTNTVNNDIETTVDNDASVNNNTNVD---DQNTDDVDDDDDDDVNDDDVND 201
Query: 285 N---SVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
N + N + +N IN T+ D+D+ DA+
Sbjct: 202 NDDVNDVNTNVNSNNQINNTTN-----DNDTNVDAN 232
>gi|1809295 (U67959) member of var gene family; implicated in
antigenic variation [Plasmodium falciparum]
Length = 2647
Score = 34.4 bits (77), Expect = 1.3
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 211 PNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLE 270
P+ +SG T P SG +DTQ +I T +D P TD++ + D I+ L+
Sbjct: 2255 PSGKLSGNTIPTSG-----NNTTASDTQNDIPT--SDTPPPITDDEWNTLKHDFISNMLQ 2307
Query: 271 NHNTSPFPLEDVPDNSVTPPNEHEDNTINKTS 302
N +DVP N T N + I TS
Sbjct: 2308 NQP------KDVP-NDYTSGNSSTNTNITTTS 2332
>gi|2120055|pir||S69957 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.D
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|2120063|pir||S69960 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.L
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|2120079|pir||S69982 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.P
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|3876064|emb|CAA96634.1| (Z72507) similar to Thrombospondin type
1 domain; cDNA EST EMBL:D34389 comes from this gene;
cDNA EST EMBL:D37437 comes from this gene; cDNA EST
EMBL:D64645 comes from this gene; cDNA EST EMBL:D65908
comes from this gene; cDN... >gi|3877441|emb|CAA96654.1|
(Z72510) similar to Thrombospondin type 1 domain; cDNA
EST EMBL:D34389 comes from this gene; cDNA EST
EMBL:D37437 comes from this gene; cDNA EST EMBL:D64645
comes from this gene; cDNA EST EMBL:D65908 comes from
this gene; cDN...
Length = 2761
Score = 34.4 bits (77), Expect = 1.3
Identities = 26/109 (23%), Positives = 48/109 (43%), Gaps = 8/109 (7%)
Query: 218 TTAPISGISPQPTQEVNTDTQ--TNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTS 275
TT P+ ++ + Q + ++ T + + T ST++ TSD + +D+ S
Sbjct: 258 TTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVSSTESVTSDSSDSTTPLDV-----S 312
Query: 276 PFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDA-DTPPDGA 323
P E S TP + + + +S A +S S +DA + P G+
Sbjct: 313 SSPSESTESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGS 361
>gi|5326779|gb|AAD42044.1|AF097183_1 (AF097183) unknown
[Cryptosporidium parvum]
Length = 984
Score = 34.4 bits (77), Expect = 1.3
Identities = 19/69 (27%), Positives = 27/69 (38%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
T T RS + TT P + P T + T T T +P+T T+ T +T
Sbjct: 802 TSTTTTRSTTTTTRPTTTTRPTTTTTITTRPTTTTTRPTTTTTRPTTTTTTTTTTTRYVT 861
Query: 267 IDLENHNTS 275
L T+
Sbjct: 862 TSLRTSTTT 870
>gi|5596628|gb|AAD45608.1|AF161021_1 (AF161021) glycoprotein G
[Bovine herpesvirus 2]
Length = 602
Score = 34.4 bits (77), Expect = 1.3
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 212 NRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLEN 271
N + + +AP + P + +T T + T T + TS +T ++ +
Sbjct: 327 NATSTSDSAPTTPFPPNSSDLSSTSTSSATQT----RSMTQTPSSTSPVSTTAVSTIFMH 382
Query: 272 HNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTP 319
H++SP E D+S T P E +++TS A ++SD TP
Sbjct: 383 HSSSPLEEEASGDSSSTTPYPSE--VVSRTSIATLEELESTESDVATP 428
>gi|5739567|gb|AAD50514.1|AC006042_1 (AC006042) supported by human
ESTs AI681256.1(NID:g4891438),N32168.1(NID:g1152567),
and genscan [Homo sapiens]
Length = 426
Score = 34.4 bits (77), Expect = 1.3
Identities = 39/151 (25%), Positives = 60/151 (38%), Gaps = 21/151 (13%)
Query: 186 ELEPQLPLHNNH---RHT-------AQLQIQTDQTPNRSISGTTAPISGISPQP----TQ 231
E + Q PLH NH HT + + P S+S + GISP+ +
Sbjct: 132 EKDRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVEGISPELEKVFIK 191
Query: 232 EVNTDTQTNIATDITDNDQ---PSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVT 288
E N + + DI D + P+ +S R+ D T ++ ++S P S
Sbjct: 192 ENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSS--CSSHSPCVSPF 249
Query: 289 PPNEHEDNTINKTSTADHYIDSDSQSDADTP 319
P E +D + ST D D D S + +P
Sbjct: 250 CPPESQDG--SPCSTEDLLYDRDKDSGSSSP 278
>gi|6323601|ref|NP_013672.1|YML039W| TyB Gag-Pol protein.; Yml039wp
Length = 1755
Score = 34.4 bits (77), Expect = 1.3
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
N + ++T T P L + D + E ++T+N T+ +D
Sbjct: 414 NDSISKST-----------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|1170515|sp|P45384|IGA2_HAEIN IMMUNOGLOBULIN A1 PROTEASE PRECURSOR
(IGA1 PROTEASE) >gi|282108|pir||A41859 IgA-specific
metalloendopeptidase (EC 3.4.24.13) type 1 precursor -
Haemophilus influenzae >gi|248810|bbs|97282 type 1
immunoglobulin A1 protease, IgA1 protease [Haemophilus
influenzae, strain HK715, Peptide, 1702 aa] >gi|148907
(M87489) IgA1 protease [Haemophilus influenzae]
Length = 1702
Score = 34.0 bits (76), Expect = 1.8
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
N+ Q Q+QT T+A +S P P +NT + T I +D+P T+
Sbjct: 1268 NNAEEVQAQLQTQ---------TSATVSTKQPAPENSINTGSATAITETAEKSDKPQTET 1318
Query: 256 QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHED 295
S T D H + V DNSV +E +
Sbjct: 1319 AAS-------TEDASQHKAN-----TVADNSVANNSESSE 1346
>gi|485429|pir||S22415 membrane protein TGN38 long form precursor -
rat >gi|57351|emb|CAA45884| (X64600) trans golgi network
(TGN) specific integral membrane protein TGN38 [Rattus
norvegicus]
Length = 380
Score = 34.0 bits (76), Expect = 1.8
Identities = 32/141 (22%), Positives = 60/141 (41%), Gaps = 32/141 (22%)
Query: 216 SGTTAPISGISPQPTQEVNTDTQT-------------------------NIATDITDNDQ 250
S P G S +PT +V ++T+T +A D + +
Sbjct: 168 SDNDKPTGGDSNKPTSKVPSNTETPKIDKVQLTEKGQKPTLISKTESGEKLAGDSDFSLK 227
Query: 251 PSTDNQTSDRATDLITIDLENHNTSP---FPLEDVPDNSVTP-PNEHEDNTIN---KTST 303
P +++S+ D+ T ++E +T P PLE+ + + P +E+++ T+ K
Sbjct: 228 PEKGDKSSEPTEDVETKEIEEGDTEPEEGSPLEEENEKVLGPSSSENQEGTLTDSMKDEK 287
Query: 304 ADHYIDSDSQSDADTPPDGAY 324
DHY D+ + A++ AY
Sbjct: 288 DDHYKDNSGNTSAESSHFFAY 308
>gi|135698|sp|P19814|TGN3_RAT TRANS-GOLGI NETWORK INTEGRAL MEMBRANE
PROTEIN TGN38 PRECURSOR >gi|57347|emb|CAA37637| (X53565)
TGN38 precursor [Rattus norvegicus]
Length = 357
Score = 34.0 bits (76), Expect = 1.8
Identities = 32/141 (22%), Positives = 60/141 (41%), Gaps = 32/141 (22%)
Query: 216 SGTTAPISGISPQPTQEVNTDTQT-------------------------NIATDITDNDQ 250
S P G S +PT +V ++T+T +A D + +
Sbjct: 168 SDNDKPTGGDSNKPTSKVPSNTETPKIDKVQLTEKGQKPTLISKTESGEKLAGDSDFSLK 227
Query: 251 PSTDNQTSDRATDLITIDLENHNTSP---FPLEDVPDNSVTP-PNEHEDNTIN---KTST 303
P +++S+ D+ T ++E +T P PLE+ + + P +E+++ T+ K
Sbjct: 228 PEKGDKSSEPTEDVETKEIEEGDTEPEEGSPLEEENEKVLGPSSSENQEGTLTDSMKDEK 287
Query: 304 ADHYIDSDSQSDADTPPDGAY 324
DHY D+ + A++ AY
Sbjct: 288 DDHYKDNSGNTSAESSHFFAY 308
>gi|2078309 (U67264) HOAR [Helicoverpa zea nuclear polyhedrosis
virus]
Length = 712
Score = 34.0 bits (76), Expect = 1.8
Identities = 29/113 (25%), Positives = 49/113 (42%), Gaps = 16/113 (14%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
+D N + T + T VN D +TN D + N+ + D+Q +D D +
Sbjct: 316 SDDDNNSNCDDATIHNEDTAELNTNTVNNDIETN--NDASVNNNTNVDDQNNDDDDDDVN 373
Query: 267 IDLENHNTSPFPLEDVPDNSVTP--PNEHEDNTINKTSTADHYIDSDSQSDAD 317
D+ ++ +DV D+ V N + DN I T+ D+D+ DA+
Sbjct: 374 DDVNDN-------DDVNDDDVNDVNTNVNSDNQITNTTN-----DNDTNVDAN 414
>gi|93165|pir||S25530 glycoprotein B - bovine herpesvirus 4
>gi|58690|emb|CAA78761| (Z15044) glycoprotein B [Bovine
herpesvirus 4]
Length = 874
Score = 33.6 bits (75), Expect = 2.3
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 210 TPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQ-TSDRATDLITID 268
T + SIS TT+ + + +P+ +T++ + T +PSTDNQ TS +T D
Sbjct: 26 TTSPSISSTTSSTTTSTSKPSNTTSTNSSLAASPQNTSTSKPSTDNQGTSTPTIPTVTDD 85
Query: 269 LENHN 273
+ N
Sbjct: 86 TASKN 90
>gi|684940 (U20661) unknown [Dictyostelium discoideum]
Length = 460
Score = 33.6 bits (75), Expect = 2.3
Identities = 26/121 (21%), Positives = 45/121 (36%), Gaps = 2/121 (1%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITI 267
+++P + + T P +P PT E T T+T T+ T +T
Sbjct: 192 EESPTPTPTETETPTPTETPTPT-ETPTPTETPTPTETPTETPTETPTETPTPTPTETPT 250
Query: 268 DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTST-ADHYIDSDSQSDADTPPDGAYPH 326
+ T+P P E + P E T +T T + +++ +TP + P
Sbjct: 251 ETPTETTTPTPTETPTETPTETPTETPTETPTETETPTPTETPTPTETPTETPTETPTPT 310
Query: 327 E 327
E
Sbjct: 311 E 311
>gi|1052834 (M93360) ORF UL119 [Macaca mulatta cytomegalovirus]
Length = 238
Score = 33.6 bits (75), Expect = 2.3
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 19/130 (14%)
Query: 210 TPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT----------------DITDNDQPST 253
T + S TTAP + V T ++ AT +T + ST
Sbjct: 28 TAANTTSTTTAPSTSTVTSSPTSVTTSVASSSATASSVTSSSAAASTTSGTVTSTSKSST 87
Query: 254 DNQTSDRATDLITIDL--ENHNTSPFPLEDVPDNS-VTPPNEHEDNTINKTSTADHYIDS 310
D+ T +++ T E+ TS E+ +NS T N DN TST I +
Sbjct: 88 DSSTQTTSSNTTTAPATTESATTSSNASENTTENSTATTNNTTSDNVTTDTSTVATSIST 147
Query: 311 DSQSDADTPP 320
+ TPP
Sbjct: 148 TVTAATTTPP 157
>gi|2081630 (U20661) unknown [Dictyostelium discoideum]
Length = 877
Score = 33.6 bits (75), Expect = 2.3
Identities = 26/121 (21%), Positives = 45/121 (36%), Gaps = 2/121 (1%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITI 267
+++P + + T P +P PT E T T+T T+ T +T
Sbjct: 609 EESPTPTPTETETPTPTETPTPT-ETPTPTETPTPTETPTETPTETPTETPTPTPTETPT 667
Query: 268 DLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTST-ADHYIDSDSQSDADTPPDGAYPH 326
+ T+P P E + P E T +T T + +++ +TP + P
Sbjct: 668 ETPTETTTPTPTETPTETPTETPTETPTETPTETETPTPTETPTPTETPTETPTETPTPT 727
Query: 327 E 327
E
Sbjct: 728 E 728
>gi|2842414|emb|CAA65748| (X97021) putative transcription factor
(forkhead/winged-helix class) [Fugu rubripes]
Length = 358
Score = 33.6 bits (75), Expect = 2.3
Identities = 33/118 (27%), Positives = 47/118 (38%), Gaps = 16/118 (13%)
Query: 189 PQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAPI--------SGISPQPTQ------EVN 234
P LP+H +H+ AQLQ Q P T P+ S ++ QP++ V+
Sbjct: 196 PCLPMHQHHQLQAQLQAQARLGPMSPAPAQTPPLHTVPDLWHSPLTQQPSKPPDDFYSVH 255
Query: 235 TDTQTNI-ATDITDNDQPSTDNQTSDRATDLITID-LENHNTSPFPLEDVPDNSVTPP 290
DT T + A D + D N + D +D L + SP L D T P
Sbjct: 256 GDTHTEVDALDPSIMDFALQGNLWEEMKDDSFNLDALGTLSNSPLRLSDCDLGGATLP 313
>gi|3201550|emb|CAA76638| (Y17116) fibrinogen-binding protein
[Staphylococcus epidermidis]
Length = 1092
Score = 33.6 bits (75), Expect = 2.3
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 223 SGISPQPTQEVNTDTQT----NIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFP 278
SG++ T + D Q + ITD+D S DN D +D + D ++ + S
Sbjct: 782 SGMTQTTTDSGDDDEQDADGEEVHVTITDHDDFSIDNGYYDDESDSDS-DSDSDSDSD-- 838
Query: 279 LEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
D +S + + D+ + S +D DSDS SD+D+ D
Sbjct: 839 -SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 880
>gi|3550596|emb|CAA06652| (AJ005647) sdr E [Staphylococcus aureus]
Length = 1166
Score = 33.6 bits (75), Expect = 2.3
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 223 SGISPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLED 281
+G + T + ++D+ ++ +D +D+D S + SD +D + + ++ D
Sbjct: 933 NGYFEEDTSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 992
Query: 282 VPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
+S + + D+ + S +D DSDS SD+D+ D
Sbjct: 993 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 1032
Score = 32.1 bits (71), Expect = 6.8
Identities = 28/104 (26%), Positives = 45/104 (42%), Gaps = 12/104 (11%)
Query: 230 TQEVNTDTQTNIATD-------ITDNDQPSTDN-----QTSDRATDLITIDLENHNTSPF 277
TQ V T+ + D ITD+D + DN TSD +D + + ++
Sbjct: 901 TQTVTNTTEDDKDADGGEVDVTITDHDDFTLDNGYFEEDTSDSDSDSDSDSDSDSDSDSD 960
Query: 278 PLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
D +S + + D+ + S +D DSDS SD+D+ D
Sbjct: 961 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 1004
>gi|3877947|emb|CAB03155.1| (Z81094) predicted using Genefinder;
similar to EGF-like domains; cDNA EST EMBL:D65072 comes
from this gene; cDNA EST EMBL:D68385 comes from this
gene; cDNA EST yk408b10.3 comes from this gene; cDNA EST
yk408b10.5 comes from ... >gi|3879260|emb|CAB03261.1|
(Z81110) predicted using Genefinder; similar to EGF-like
domains; cDNA EST EMBL:D65072 comes from this gene; cDNA
EST EMBL:D68385 comes from this gene; cDNA EST yk408b10.3
comes from this gene; cDNA EST yk408b10.5 comes from ...
Length = 3191
Score = 33.6 bits (75), Expect = 2.3
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 28/143 (19%)
Query: 210 TPNRSISGTTAPISGISPQPTQ---------------EVNTDT------QTNIATDITDN 248
TP + TT P S ++P T+ E +T T +T+ T +
Sbjct: 2774 TPRTFLFTTTQPTSRVTPDTTRITDFYTRTTSSGTTSETSTSTSSQTVSETDGTTSMFQT 2833
Query: 249 DQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYI 308
+PST +++ ++ T+ LE + SVTP E T + T+T ++
Sbjct: 2834 SEPSTWQTSNEPTSEPTTVPLETSTWQNTDGTSMEPTSVTP---EEGQTTSPTATTLTFV 2890
Query: 309 DSD----SQSDADTPPDGAYPHE 327
DS + ++A T +G E
Sbjct: 2891 DSTLETVTTTEATTTSEGTTSQE 2913
>gi|5834649|emb|CAB55329.1| (Y09927) Mrp protein [Staphylococcus
aureus]
Length = 2478
Score = 33.6 bits (75), Expect = 2.3
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTN--IATDITD--NDQPSTDNQTS-DRAT 262
+ T ++S TTA PT N+D T AT TD ND+P +N +S D +T
Sbjct: 2093 ENTGQPNVSETTAN-GKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDAST 2151
Query: 263 DLITIDLE----------NHNTSPFPL---------EDVPDNSVTPPNEHEDNTINKTST 303
+ T+D + N+ T+ P+ E +N+ T +E+ T+T
Sbjct: 2152 NSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTAT 2211
Query: 304 ADHYIDSDSQSDADT 318
A +++ S AD+
Sbjct: 2212 APTTASTEAASSADS 2226
>gi|1888529 (U89243) replicase [garlic virus B]
Length = 1543
Score = 33.2 bits (74), Expect = 3.0
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 190 QLPLHNNHRHTAQL------QIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNI-- 241
Q P N R T + + T T ++ ++ T P P T + TD + +
Sbjct: 471 QNPQQNRERVTPEKLAHSSDESHTQITSSQGVNDHTWPTEQSQPTNTCKEITDDENMMDG 530
Query: 242 -ATDITDNDQPSTDN----QTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDN 296
TD TD+D +D Q + I DL + LE V D + ++ D+
Sbjct: 531 HVTDWTDSDSDHSDEDIETQPETNLSQSIHDDLLPDESDLPDLESVADEQ-SDAEDNGDS 589
Query: 297 TINKTSTADHYIDSDSQSDADTPPD 321
TI++ + + D+++ A TP +
Sbjct: 590 TIDQANLCNTTCDAETDKSAQTPAE 614
>gi|1945315|emb|CAA97027| (Z72823) TY1B [Saccharomyces cerevisiae]
>gi|1945316|emb|CAA97035| (Z72824) TY1B [Saccharomyces
cerevisiae]
Length = 1756
Score = 33.2 bits (74), Expect = 3.0
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLIT 266
++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTDN + ++T
Sbjct: 368 EKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTDNDSISKST---- 422
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
T P L + D + E ++T+N T+ +D
Sbjct: 423 -------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 452
>gi|2078016|emb|CAB08447| (Z95207) hypothetical protein Rv2843
[Mycobacterium tuberculosis]
Length = 181
Score = 33.2 bits (74), Expect = 3.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 40 PNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRFQLKADVHAWVTPLWT 92
P DP PP ++ I+ L+ + E S LV SG+R L A + A T +T
Sbjct: 120 PTDPAAPPPAVSDVIDSLRTSAGEAS-RLVATTSGYRAGLLASIAASCTASYT 171
>gi|2120053|pir||S69839 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.GR2
Length = 1755
Score = 33.2 bits (74), Expect = 3.0
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLIT 266
++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTDN + ++T
Sbjct: 367 EKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTDNDSISKST---- 421
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
T P L + D + E ++T+N T+ +D
Sbjct: 422 -------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|2120080|pir||S69949 TyB protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.DR
Length = 1755
Score = 33.2 bits (74), Expect = 3.0
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 208 DQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLIT 266
++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTDN + ++T
Sbjct: 367 EKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTDNDSISKST---- 421
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTAD 305
T P L + D + E ++T+N T+ +D
Sbjct: 422 -------TEPIQLNNKHDLHL--GQELTESTVNHTNHSD 451
>gi|3550592|emb|CAA06650| (AJ005645) sdrc [Staphylococcus aureus]
Length = 947
Score = 33.2 bits (74), Expect = 3.0
Identities = 24/106 (22%), Positives = 48/106 (44%), Gaps = 7/106 (6%)
Query: 223 SGISPQPTQEVNTDTQTNIATDI-------TDNDQPSTDNQTSDRATDLITIDLENHNTS 275
+G + T + ++D+ ++ +D +D+D S + SD +D + + N+
Sbjct: 710 NGYYEEETSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSNSD 769
Query: 276 PFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
D +S + + D+ + S +D DSDS SD+D+ D
Sbjct: 770 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 815
Score = 32.8 bits (73), Expect = 3.9
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 234 NTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEH 293
++D+ ++ +D +D+D S + SD +D + N ++ D +S + +
Sbjct: 731 DSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSNSDSDSDSDSDSDSDSDSDSDSD 789
Query: 294 EDNTINKTSTADHYIDSDSQSDADTPPD 321
D+ + S +D DSDS SD+D+ D
Sbjct: 790 SDSDSDSDSDSDSDSDSDSDSDSDSDSD 817
Score = 32.8 bits (73), Expect = 3.9
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 234 NTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEH 293
++D+ +N +D +D+D S + SD +D + + ++ D +S + +
Sbjct: 761 DSDSDSNSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 819
Query: 294 EDNTINKTSTADHYIDSDSQSDADTPPD 321
D+ + S +D DSDS SD+D+ D
Sbjct: 820 SDSDSDSDSDSDSDSDSDSDSDSDSDSD 847
>gi|3834294 (U80846) No definition line found [Caenorhabditis elegans]
Length = 2232
Score = 33.2 bits (74), Expect = 3.0
Identities = 26/109 (23%), Positives = 42/109 (37%), Gaps = 14/109 (12%)
Query: 207 TDQTPNRSISGTTAP-----------ISGISPQPTQEVNTDTQTNIATDITDNDQPSTDN 255
T Q+PN S SG++ P +S + + T +T T + I + +T S N
Sbjct: 1261 TSQSPNPSTSGSSTPTPNPSQSTSPVVSTTTGEMTSHGSTQTPSTIGSTVTQPSTVSGSN 1320
Query: 256 QTSDRAT---DLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKT 301
+ T + + TSP + VP +S P +T T
Sbjct: 1321 SSGSTVTIGSSEASTSGSSFKTSPSSISPVPTSSPIPSTTFASSTSGST 1369
>gi|6226547|sp|P03949|ABL1_CAEEL TYROSINE-PROTEIN KINASE ABL-1
>gi|3878702|emb|CAA90691.1| (Z50806) Tyrosine-protein
kinase ABL-1, [991027 dl] : EST data indicates there are
multiple splice variants for this gene, hence M79.1 was
renamed M79.1a; cDNA EST EMBL:D27530 comes from this
gene; cDNA EST EMBL:D34787 comes ...
Length = 1196
Score = 33.2 bits (74), Expect = 3.0
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 182 KDIGELEPQLPLHNNHRHTAQLQI-QTDQTPNRSISGTT-APISGISPQPTQEVNTDTQT 239
KD+G P+ H T +++I + D PN + G A I + P +E NT +Q
Sbjct: 877 KDVGMWGPK------HAVTRKIEIVKNDSYPN--VEGELKAKIRNLRHVPKEESNTSSQE 928
Query: 240 NIATDITDNDQPS---TDNQTSDRATDLIT---IDLENHNTSPFPLEDVPDNSVTPPNEH 293
++ D TDN S + L+T L++H PF L+ P+NS + H
Sbjct: 929 DLPLDATDNTNDSIIVIPRDEKAKVRQLVTQKVSPLQHHR--PFSLQ-CPNNSTSSAISH 985
Query: 294 EDN 296
++
Sbjct: 986 SEH 988
>gi|6425196|emb|CAB60296.1| (Z50806) cDNA EST yk569a3.5 comes from
this gene [Caenorhabditis elegans]
Length = 1186
Score = 33.2 bits (74), Expect = 3.0
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 182 KDIGELEPQLPLHNNHRHTAQLQI-QTDQTPNRSISGTT-APISGISPQPTQEVNTDTQT 239
KD+G P+ H T +++I + D PN + G A I + P +E NT +Q
Sbjct: 867 KDVGMWGPK------HAVTRKIEIVKNDSYPN--VEGELKAKIRNLRHVPKEESNTSSQE 918
Query: 240 NIATDITDNDQPS---TDNQTSDRATDLIT---IDLENHNTSPFPLEDVPDNSVTPPNEH 293
++ D TDN S + L+T L++H PF L+ P+NS + H
Sbjct: 919 DLPLDATDNTNDSIIVIPRDEKAKVRQLVTQKVSPLQHHR--PFSLQ-CPNNSTSSAISH 975
Query: 294 EDN 296
++
Sbjct: 976 SEH 978
>gi|6425197|emb|CAB60297.1| (Z50806) M79.1c [Caenorhabditis elegans]
Length = 1181
Score = 33.2 bits (74), Expect = 3.0
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 182 KDIGELEPQLPLHNNHRHTAQLQI-QTDQTPNRSISGTT-APISGISPQPTQEVNTDTQT 239
KD+G P+ H T +++I + D PN + G A I + P +E NT +Q
Sbjct: 862 KDVGMWGPK------HAVTRKIEIVKNDSYPN--VEGELKAKIRNLRHVPKEESNTSSQE 913
Query: 240 NIATDITDNDQPS---TDNQTSDRATDLIT---IDLENHNTSPFPLEDVPDNSVTPPNEH 293
++ D TDN S + L+T L++H PF L+ P+NS + H
Sbjct: 914 DLPLDATDNTNDSIIVIPRDEKAKVRQLVTQKVSPLQHHR--PFSLQ-CPNNSTSSAISH 970
Query: 294 EDN 296
++
Sbjct: 971 SEH 973
>gi|2494158|sp|P75354|DNJM_MYCPN DNAJ-LIKE PROTEIN MG200 HOMOLOG
>gi|2146116|pir||S73361 DnaJ homolog protein C09_orf910
- Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1673683
(AE000004) Mycoplasma pneumoniae, DnaJ homolog protein,
from M. capricolum [Mycoplasma pneumoniae]
Length = 910
Score = 33.2 bits (74), Expect = 3.0
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 206 QTDQTPNRSISGTTAPISGISPQPTQEVNTDT--QTNIATDITDNDQPSTDNQTSDRATD 263
+TD I+ TTA + T ++ D + N + + D +TD ++AT+
Sbjct: 378 ETDAAALEEINHTTADLEPAEVSATNDLEQDVVEKVNFSEPESTVDTAATD-PVVEQATE 436
Query: 264 LITIDLENHNTSPFPLEDVPDNSVTPPNEHED-----NTINKT---STADHYIDSDSQSD 315
T + N S F L D N TP + ED T+++T STA ++S +
Sbjct: 437 TSTNGFKFFNFSSFVLSDQNPNPQTPTHHEEDAAAPEPTVDETSGESTAPEVTIAESTVE 496
Query: 316 ADT 318
+T
Sbjct: 497 LET 499
>gi|6691800|emb|CAB65843.1| (AL133504)
/prediction=(method:""genefinder"", version:""084"");
/prediction=(method:""genscan"", version:""1.0"")
[Drosophila melanogaster]
Length = 632
Score = 33.2 bits (74), Expect = 3.0
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 214 SISGTTAPISGISPQPTQEVNTDTQTN--IATDITDNDQPSTDNQTSDRATDLITIDLEN 271
S++ P ISP +Q N+D +N +AT T P+ + DL+ +DL+
Sbjct: 510 SLTTPETPTPNISPTTSQPCNSDAFSNDFVATSTTGKG-PNIPLAEFGGSWDLLELDLQL 568
Query: 272 HNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPDGAY 324
H + P D + ED + T H D DS D D +
Sbjct: 569 HEVNLDPSYDTDVEECIFLGDEED----REGTEGHGHDEDSDEDDSVVVDDPF 617
>gi|541336|pir||S41539 fibrinogen-binding protein - Staphylococcus
aureus >gi|397526|emb|CAA79304| (Z18852) clumping factor
[Staphylococcus aureus]
Length = 933
Score = 33.2 bits (74), Expect = 3.0
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 225 ISPQPTQEVNTDTQTNIATDI-TDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVP 283
I P P ++ ++D ++ +D +D+ S + TSD +D + ++ D
Sbjct: 554 IEPIP-EDSDSDPGSDSGSDSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSA 612
Query: 284 DNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
+S + + DN + S +D DSDS SD+D+ D
Sbjct: 613 SDSDSASDSDSDNDSDSDSDSDSDSDSDSDSDSDSDSD 650
Score = 32.8 bits (73), Expect = 3.9
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 234 NTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEH 293
++D+ ++ +D +D+D S + SD +D + + ++ D +S + +
Sbjct: 750 DSDSDSDSDSD-SDSDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSE 808
Query: 294 EDNTINKTSTADHYIDSDSQSDADTPPDGA 323
D+ S +D DSDS SD+D+ D A
Sbjct: 809 SDSDSESDSDSDSDSDSDSDSDSDSDSDSA 838
Score = 32.5 bits (72), Expect = 5.2
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 234 NTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEH 293
++D+ ++ +D +D+D S + SD +D + + ++ D +S + +
Sbjct: 680 DSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 738
Query: 294 EDNTINKTSTADHYIDSDSQSDADTPPDGA 323
D+ + S +D DSDS SD+D+ D A
Sbjct: 739 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSA 768
Score = 32.5 bits (72), Expect = 5.2
Identities = 23/110 (20%), Positives = 46/110 (40%)
Query: 212 NRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLEN 271
+ S SG+ + S + + + + +D+D S + SD +D + +
Sbjct: 573 SNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSDNDSDSDSD 632
Query: 272 HNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPD 321
++ D +S + + D+ + S +D DSDS SD+D+ D
Sbjct: 633 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 682
Score = 32.1 bits (71), Expect = 6.8
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 234 NTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEH 293
++D+ ++ +D +D+D S + SD +D + + ++ D +S + +
Sbjct: 724 DSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSASDSDSDSDSDSDSD 782
Query: 294 EDNTINKTSTADHYIDSDSQSDADTPPD 321
D+ + S +D DSDS SD+D+ D
Sbjct: 783 SDSDSDSDSDSDSDSDSDSDSDSDSESD 810
>gi|6324768|ref|NP_014837.1|TOA1| Transcription factor IIA, large
chain; Toa1p >gi|418108|sp|P32773|TOA1_YEAST
TRANSCRIPTION INITIATION FACTOR IIA LARGE CHAIN (TFIIA
32 KD SUBUNIT) >gi|285446|pir||B41810 transcription
factor IIA large chain - yeast (Saccharomyces
cerevisiae) >gi|172893 (M85248) transcription factor IIA
[Saccharomyces cerevisiae] >gi|1420463|emb|CAA99407|
(Z75102) ORF YOR194c [Saccharomyces cerevisiae]
Length = 286
Score = 33.2 bits (74), Expect = 3.0
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 185 GELEPQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATD 244
G + P + +NN H+ + I T+ + SG T +NT+T N D
Sbjct: 97 GLILPNINSNNNIPHSGETNINTNTVEATNNSGAT-------------LNTNTSGNTNAD 143
Query: 245 ITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTA 304
+T QP + + I+L +N + +E++ D S +E ++ + KT
Sbjct: 144 VT--SQPKIEVKPE--------IELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKE 193
Query: 305 DHYID 309
I+
Sbjct: 194 KEQIE 198
>gi|6093441|sp|Q29435|MUC1_HYLLA MUCIN 1 PRECURSOR >gi|897612
(L41589) epithelial mucin [Hylobates lar] >gi|899125
(L41625) mucin [Hylobates lar]
Length = 475
Score = 33.2 bits (74), Expect = 3.0
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 176 PPLSDLKDIGELEPQL-----PLHN--NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQ 228
PP+ + + P L P+HN + +A T S TT P S +P
Sbjct: 153 PPVHGVTSAPDTRPTLGSTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPF 212
Query: 229 PTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSP 276
++DT T + + T D ST + T T NH+TSP
Sbjct: 213 SIPSHHSDTPTTLTSHSTKTDASSTHHSTVSPLTS------SNHSTSP 254
>gi|3152593 (AC002986) Contains similarity to thyroid receptor
interactor gb|L40410 from Homo sapiens. [Arabidopsis
thaliana]
Length = 699
Score = 32.8 bits (73), Expect = 3.9
Identities = 17/74 (22%), Positives = 33/74 (43%), Gaps = 1/74 (1%)
Query: 242 ATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKT 301
AT TD D T+ + ++ T+ ++ + N + P+E+ P + T P E E +
Sbjct: 421 ATTTTDGDNEETEAENAEEKTEEY-VEAQQDNEADEPVEESPTETETIPTEEESRDQTEE 479
Query: 302 STADHYIDSDSQSD 315
+ D +S +
Sbjct: 480 ENQEPLTDMESDKE 493
>gi|5163172|gb|AAD40569.1| (AF100791) variant-specific surface
protein [Plasmodium falciparum]
Length = 438
Score = 32.8 bits (73), Expect = 3.9
Identities = 26/97 (26%), Positives = 42/97 (42%), Gaps = 10/97 (10%)
Query: 227 PQPTQEVNTDTQTNIATDI--TDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPD 284
P +NTD I D T N+ + D TD I DLE +N P+ + D
Sbjct: 319 PSHNHVLNTDVSIQIDMDNPKTKNEITNMDTNPDKSTTDTILDDLEKYN-EPYYYDFYED 377
Query: 285 NSVTPPNEHEDNTINKTSTADHYIDSD--SQSDADTP 319
+ + + D + K+S D Y+D + + ++ D P
Sbjct: 378 DII-----YHDVDVEKSSMDDIYVDHNNVTSNNMDVP 409
>gi|5163174|gb|AAD40570.1| (AF100792) variant-specific surface
protein [Plasmodium falciparum]
Length = 455
Score = 32.8 bits (73), Expect = 3.9
Identities = 26/97 (26%), Positives = 42/97 (42%), Gaps = 10/97 (10%)
Query: 227 PQPTQEVNTDTQTNIATDI--TDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPD 284
P +NTD I D T N+ + D TD I DLE +N P+ + D
Sbjct: 336 PSHNHVLNTDVSIQIDMDNPKTKNEITNMDTNPDKSTTDTILDDLEKYN-EPYYYDFYED 394
Query: 285 NSVTPPNEHEDNTINKTSTADHYIDSD--SQSDADTP 319
+ + + D + K+S D Y+D + + ++ D P
Sbjct: 395 DII-----YHDVDVEKSSMDDIYVDHNNVTSNNMDVP 426
>gi|129757|sp|P11073|PELC_ERWCH PECTATE LYASE C PRECURSOR
>gi|68347|pir||WZWC6C pectate lyase (EC 4.2.2.2) C
precursor - Erwinia chrysanthemi (strain EC16)
>gi|148460 (M19411) pectate lyase C (EC 4.2.2.2)
[Erwinia chrysanthemi]
Length = 375
Score = 32.5 bits (72), Expect = 5.2
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 239 TNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTI 298
T ++ N Q +N ++A + +T + N + L+ N++T P + +I
Sbjct: 260 TGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKG---NNITKPADFSTYSI 316
Query: 299 NKTSTADHYIDSDSQSDADTPPDGAY 324
T+ Y+++DS + T P AY
Sbjct: 317 TWTADTKPYVNADSWTSTGTFPTVAY 342
>gi|6324467|ref|NP_014536.1|WSC3| Putative integral membrane protein
containing novel cysteine motif. Similarity to SLG1
(WSC1), WSC2 and WSC4; Wsc3p >gi|1077307|pir||S51892
probable membrane protein YOL105c - yeast (Saccharomyces
cerevisiae) >gi|663247|emb|CAA88155| (Z48149) similarity
with H. polymorpha hypothetical protein in LEU2 region
[Saccharomyces cerevisiae] >gi|1419967|emb|CAA99123|
(Z74847) ORF YOL105c [Saccharomyces cerevisiae]
Length = 556
Score = 32.5 bits (72), Expect = 5.2
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 2/117 (1%)
Query: 205 IQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIAT-DITDNDQPSTDNQTSDRATD 263
+ T T + S S TT+ + + T T + T+ T T + ST + T+ T
Sbjct: 186 VSTTSTTSSSTSSTTSSTTSSTTSSTTSSTTSSSTSSTTSSTTSSTTSSTTSSTTSSTTS 245
Query: 264 LITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYID-SDSQSDADTP 319
T + TS F + + +EH +S + + S S S TP
Sbjct: 246 STTSSTTSSTTSIFSVTSSSSSITLSSSEHTTVDSRTSSPSSTLVPVSSSSSTLSTP 302
>gi|999880|pdb|2PEC| Pectate Lyase C (Plc) (E.C.4.2.2.2)
>gi|2392145|pdb|1AIR| Pectate Lyase C From Erwinia
Chrysanthemi (Ec16) To A Resolution Of 2.2 Angstroms
With 128 Waters >gi|5822222|pdb|1PLU|A Chain A, Pectate
Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The
Putative Calcium Binding Site
Length = 353
Score = 32.5 bits (72), Expect = 5.2
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 239 TNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTI 298
T ++ N Q +N ++A + +T + N + L+ N++T P + +I
Sbjct: 238 TGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKG---NNITKPADFSTYSI 294
Query: 299 NKTSTADHYIDSDSQSDADTPPDGAY 324
T+ Y+++DS + T P AY
Sbjct: 295 TWTADTKPYVNADSWTSTGTFPTVAY 320
>gi|2072425 (U83115) non-lens beta gamma-crystallin like protein
[Homo sapiens]
Length = 1637
Score = 32.5 bits (72), Expect = 5.2
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 213 RSISGTTAPISGISPQPTQEVNTDTQTN---IATDITDNDQPSTDNQTSDRATDLITIDL 269
R ++G ++ + PQP Q+ D QT+ ++ + P D++ ++ D
Sbjct: 271 RGMNGDSSENQALGPQPNQDDKADVQTDAGCLSEPVASALIPVKDHKLLEKE------DS 324
Query: 270 ENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTS-TADHYIDSDSQSDADTPP 320
E ++ LE+V D + P + + T+ + SDSQS A++ P
Sbjct: 325 EAADSKSLVLENVTDTAQDIPTTVDTKDLPPTAMPKPQHTFSDSQSPAESSP 376
>gi|3328843|gb|AAC68011.1| (AE001315) Putative outer membrane
protein C [Chlamydia trachomatis]
Length = 1770
Score = 32.5 bits (72), Expect = 5.2
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 221 PISGISPQPTQEVNTDTQTNIATDITDNDQPST-DNQTSDRATDLITIDLENHNTSPFPL 279
P+ G T++ N++T+ + A + Q T D T D + + S L
Sbjct: 622 PVEGEESTATEDPNSNTEGSSANTNLEGSQGDTADTGTGDVNNESQDTSDTGNAESEEQL 681
Query: 280 ED---------VPDNSVTPPNEHEDNTINKTST--ADHYIDSDSQSDADTPPDG 322
+D +P++++ NE+ D + + + D + S S+S + TP DG
Sbjct: 682 QDSTQSNEENTLPNSNIDQSNENTDESSDSHTEEITDESVSSSSESGSSTPQDG 735
>gi|3758871|emb|CAA09005| (AJ010115) TspB protein [Neisseria
meningitidis]
Length = 504
Score = 32.5 bits (72), Expect = 5.2
Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 10/128 (7%)
Query: 203 LQIQTDQTPNRSISGTTAP--ISGISPQPTQEVN----TDTQTNIATDITDNDQPSTDNQ 256
L ++ D P++ I T P + P +VN TD N + + S N
Sbjct: 247 LSLKVDANPDKYIKETGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNT 306
Query: 257 TSDRAT----DLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDS 312
T D DL E N P P +N PN +E+ + D ++ D+
Sbjct: 307 TVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDA 366
Query: 313 QSDADTPP 320
D D P
Sbjct: 367 NPDTDGQP 374
>gi|4063766|dbj|BAA36223| (D87895) chitinase [Emericella nidulans]
Length = 961
Score = 32.5 bits (72), Expect = 5.2
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 207 TDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLIT 266
T T S + TT+ S S T + T T T T + PST S T+ +T
Sbjct: 364 TSTTSTTSATSTTSTTSTTSTTSTTPTTSTTSTTSTTTPTPSPSPST---ASSSTTETVT 420
Query: 267 IDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPDGAYP 325
P P ++S T E +++ TST + S++ S+ TP + P
Sbjct: 421 ---------PSPKPSPSESSTT----SETSSLPSTSTP---VVSETPSETKTPTSSSAP 463
>gi|6006395|emb|CAB56768.1| (AJ132096) squamosa promoter binding
protein-like 12 [Arabidopsis thaliana]
>gi|6006403|emb|CAB56769.1| (AJ132097) squamosa promoter
binding protein-like 12 [Arabidopsis thaliana]
Length = 927
Score = 32.5 bits (72), Expect = 5.2
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 268 DLENHNTSPFPLEDVPDNS----VTPPNEHEDNTINKTSTADHYIDSDSQSDAD--TPP 320
D+++H+ S P ++V NS V P + +N D YIDSD +D + +PP
Sbjct: 297 DIKHHSVSETPWQEVYANSAQERVAPDRSEKQVKVNDFDLNDIYIDSDDTTDIERSSPP 355
>gi|532113 (U13646) homeotic region most like HMPB_DROME: homeotic
proboscipedia protein [Caenorhabditis elegans]
Length = 3507
Score = 32.5 bits (72), Expect = 5.2
Identities = 28/122 (22%), Positives = 48/122 (38%), Gaps = 15/122 (12%)
Query: 199 HTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTS 258
H +L I T P+ S+ T+ + P+ T++ + T PS + T
Sbjct: 2229 HVTKLSI-TSSNPSSSVPVTSPKSTPTVPESTEQPTSTT-------------PSGQSLTP 2274
Query: 259 DRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHY-IDSDSQSDAD 317
+ + E H S DV +S TP N E +T+ T+ ++S+ S +
Sbjct: 2275 MNSNSEVLTTSEPHVLSSSLSPDVSQSSTTPNNLSESSTVETPKTSSEVSLNSEEPSTTE 2334
Query: 318 TP 319
P
Sbjct: 2335 AP 2336
>gi|6716567|gb|AAF26681.1|AF174417_1 (AF174417) voltage-dependent
calcium channel beta2A subunit [Bos taurus]
Length = 603
Score = 32.5 bits (72), Expect = 5.2
Identities = 27/113 (23%), Positives = 43/113 (37%), Gaps = 5/113 (4%)
Query: 219 TAPISGISPQPTQEVNTDTQT-NIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPF 277
T P S P P T T ++ + N Q S +Q +DR + P
Sbjct: 409 THPPSSSLPNPLLSRTLATSTLPVSPTLASNSQGSQGDQRTDRGAPGRSASQAEEEHCPE 468
Query: 278 PLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT---PPDGAYPHE 327
P++ S T + H T ++ + +DS++Q D+ P Y HE
Sbjct: 469 PVKKAQHRSSTQHHNHRSGT-SRGLSRQETLDSETQESRDSAYAEPKEEYSHE 520
>gi|6716569|gb|AAF26682.1|AF174418_1 (AF174418) voltage-dependent
calcium channel beta2B subunit [Bos taurus]
Length = 618
Score = 32.5 bits (72), Expect = 5.2
Identities = 27/113 (23%), Positives = 43/113 (37%), Gaps = 5/113 (4%)
Query: 219 TAPISGISPQPTQEVNTDTQT-NIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPF 277
T P S P P T T ++ + N Q S +Q +DR + P
Sbjct: 424 THPPSSSLPNPLLSRTLATSTLPVSPTLASNSQGSQGDQRTDRGAPGRSASQAEEEHCPE 483
Query: 278 PLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADT---PPDGAYPHE 327
P++ S T + H T ++ + +DS++Q D+ P Y HE
Sbjct: 484 PVKKAQHRSSTQHHNHRSGT-SRGLSRQETLDSETQESRDSAYAEPKEEYSHE 535
>gi|1078436|pir||S51894 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.OL
>gi|663249|emb|CAA88157| (Z48149) TyA protein - yeast
transposon Ty1-H3 [Saccharomyces cerevisiae]
>gi|1419959|emb|CAA99117| (Z74845) TY1A [Saccharomyces
cerevisiae] >gi|1419964|emb|CAA99121| (Z74846) TY1A
[Saccharomyces cerevisiae]
Length = 440
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRAT 262
N + ++T
Sbjct: 414 NDSISKST 421
>gi|6322486|ref|NP_012561.1|YJR026W| Yjr026wp
>gi|6323602|ref|NP_013673.1|YML040W| TyA Gag protein.;
Yml040wp >gi|1353061|sp|P47097|YJZ6_YEAST TRANSPOSON TY1
PROTEIN A >gi|1077238|pir||S52480 TyA protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty1
>gi|1078432|pir||S57044 TyA protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty1.JR
>gi|2120105|pir||S69962 TyA protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty1.L
>gi|683667|emb|CAA88329| (Z48430) YM8054.03, TYA orf,
len: 440, CAI: 0.15 [Saccharomyces cerevisiae]
>gi|1015667|emb|CAA89552| (Z49526) TY1A [Saccharomyces
cerevisiae] >gi|1129162|emb|CAA60721| (X87297) Ty1A
[Saccharomyces cerevisiae]
Length = 440
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRAT 262
N + ++T
Sbjct: 414 NDSISKST 421
>gi|2822106|sp|P13942|CA2B_HUMAN COLLAGEN ALPHA 2(XI) CHAIN
PRECURSOR >gi|1000746 (U32169) Pro-a2(XI) [Homo sapiens]
>gi|1584719|prf||2123363A
collagen:SUBUNIT=alpha2:ISOTYPE=XI [Homo sapiens]
Length = 1736
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/80 (23%), Positives = 33/80 (40%), Gaps = 7/80 (8%)
Query: 247 DNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADH 306
D + P D T+ D + +P E++ ++S+ PP E E + TAD
Sbjct: 274 DYEPPYYDVMTTGTTPDY-------QDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADR 326
Query: 307 YIDSDSQSDADTPPDGAYPH 326
+ + PP+G Y +
Sbjct: 327 FQAEEYGEGGTDPPEGPYDY 346
>gi|6016107|sp|Q27913|GBP_PSESE GROWTH-BLOCKING PEPTIDE PRECURSOR
(GBP) >gi|2133612|pir||S68226 growth-blocking peptide
precursor - armyworm (Pseudaletia separata)
>gi|1245958|bbs|174567 (S80564) growth-blocking peptide,
GBP [Pseudaletia separata=armyworms, larvae, Peptide,
143 aa] [Pseudaletia separata] >gi|3551188|dbj|BAA32793|
(AB012294) growth-blocking peptide precursor
[Pseudaletia separata]
Length = 143
Score = 32.1 bits (71), Expect = 6.8
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 272 HNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPDGAYP 325
H T+ ED+ NS+ PN+ N S+ H+ DS+ +DA PD P
Sbjct: 36 HGTADKVKEDL--NSLFHPNDKNQQGNNDASSNIHFADSEENTDAAKKPDEVTP 87
>gi|2120106|pir||S69837 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.GR1
>gi|1323002|emb|CAA97013| (Z72813) TY1A [Saccharomyces
cerevisiae] >gi|1325963|emb|CAA97011| (Z72812) TY1A
[Saccharomyces cerevisiae]
Length = 440
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRAT 262
N + ++T
Sbjct: 414 NDSISKST 421
>gi|1519696 (U67956) coded for by C. elegans cDNA yk126f9.5; coded
for by C. elegans cDNA yk159h6.3; coded for by C.
elegans cDNA yk126f9.3; coded for by C. elegans cDNA
yk159h6.5 [Caenorhabditis elegans]
Length = 1229
Score = 32.1 bits (71), Expect = 6.8
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 200 TAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATD-ITDNDQPSTDNQTS 258
T + TD+ + S TT + T E T T+ I T+ T ++P+T +
Sbjct: 611 TTEEPTTTDEPTTTTESSTTGKATTPELSTTSEETTTTELKITTEGSTTTEEPTTTAIFA 670
Query: 259 DRATDLITIDLENHNTS 275
+ +T +IT D E +T+
Sbjct: 671 EASTGIITTDEETTSTT 687
>gi|1588315|prf||2208331A collagen:SUBUNIT=alpha2:ISOTYPE=XI [Homo
sapiens]
Length = 555
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/80 (23%), Positives = 33/80 (40%), Gaps = 7/80 (8%)
Query: 247 DNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADH 306
D + P D T+ D + +P E++ ++S+ PP E E + TAD
Sbjct: 274 DYEPPYYDVMTTGTTPDY-------QDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADR 326
Query: 307 YIDSDSQSDADTPPDGAYPH 326
+ + PP+G Y +
Sbjct: 327 FQAEEYGEGGTDPPEGPYDY 346
>gi|1724041 (U41068) collagen alpha2(XI) [Homo sapiens]
Length = 537
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/80 (23%), Positives = 33/80 (40%), Gaps = 7/80 (8%)
Query: 247 DNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADH 306
D + P D T+ D + +P E++ ++S+ PP E E + TAD
Sbjct: 274 DYEPPYYDVMTTGTTPDY-------QDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADR 326
Query: 307 YIDSDSQSDADTPPDGAYPH 326
+ + PP+G Y +
Sbjct: 327 FQAEEYGEGGTDPPEGPYDY 346
>gi|2120108|pir||S69985 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.P
Length = 440
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRAT 262
N + ++T
Sbjct: 414 NDSISKST 421
>gi|1084591|pir||S53553 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty2 >gi|2120122|pir||S69956
TyA protein - yeast (Saccharomyces cerevisiae)
retrotransposon Ty1.D >gi|2120125|pir||S69978 TyA
protein - yeast (Saccharomyces cerevisiae)
retrotransposon Ty1.P >gi|2120126|pir||S69961 TyA
protein - yeast (Saccharomyces cerevisiae)
retrotransposon Ty1.L >gi|1370528|emb|CAA97983| (Z73613)
TY1A [Saccharomyces cerevisiae]
>gi|1370533|emb|CAA97987| (Z73614) TY1A [Saccharomyces
cerevisiae]
Length = 440
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRAT 262
N + ++T
Sbjct: 414 NDSISKST 421
>gi|2120110|pir||S69964 TyA protein - yeast (Saccharomyces
cerevisiae) retrotransposon Ty1.L
Length = 440
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRAT 262
N + ++T
Sbjct: 414 NDSISKST 421
>gi|3282686 (AF039527) limonene hydroxylase [Bacillus
stearothermophilus]
Length = 543
Score = 32.1 bits (71), Expect = 6.8
Identities = 28/84 (33%), Positives = 38/84 (44%), Gaps = 16/84 (19%)
Query: 131 NIIHTLEEREWIRVVGHRDAPGKPALFGTT----KAFLDYFGLKRLD----------ELP 176
N++ LEER+ IR+ H++ P + T K + Y G R D +P
Sbjct: 344 NLLRVLEERKVIRIGDHKERPINVRVIAATNRNLKEEIAYRGSFRSDLYYRLNVFTIHIP 403
Query: 177 PLSDLK-DIGELEPQLPLHNNHRH 199
PL D K DI L Q L N H+H
Sbjct: 404 PLRDRKEDIETLSLQF-LKNFHQH 426
>gi|3327208|dbj|BAA31672| (AB014597) KIAA0697 protein [Homo sapiens]
Length = 968
Score = 32.1 bits (71), Expect = 6.8
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 177 PLSDLKDIGELEPQL-PLHNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNT 235
PLS + +P + P H+N + Q + + + S TT S S P T
Sbjct: 296 PLSPARATNSPKPHMVPRHSNQNSSGS---QVNSAGSLTSSPTTTTSSSASTVP----GT 348
Query: 236 DTQTNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSP----FPL----EDVPDNSV 287
T + ++ T +TS+ T +T N+NT+P +P+ E P +S
Sbjct: 349 STNGSPSSPSVRRQLFVTVVKTSNATTTTVTTTASNNNTAPTNATYPMPTAKEHYPVSSP 408
Query: 288 TPPNE-------HEDNTINKTSTADHYIDSDSQSDADTPP 320
+ P+ ++ ++ S + + + S S+ +A +PP
Sbjct: 409 SSPSPPAQPGGVSRNSPLDCGSASPNKVASSSEQEAGSPP 448
>gi|83586|pir||A22671 TyA protein - yeast (Saccharomyces cerevisiae)
transposon Ty912 >gi|209601 (M11351) Tya protein
[Artificial gene]
Length = 440
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 196 NHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDI-TDNDQPSTD 254
N + + + ++ +RS + TT P I+ P + N+ ++T A ++ T N+ PSTD
Sbjct: 355 NSKPNYRRNLSDEKNDSRSYTNTTKP-KVIARNPQKTNNSKSKTARAHNVSTSNNSPSTD 413
Query: 255 NQTSDRAT 262
N + ++T
Sbjct: 414 NDSISKST 421
>gi|3820987|emb|CAA20240.1| (AL031228) dJ1033B10.12 (collagen, type
XI, alpha 2 (COL11A2)) [Homo sapiens]
Length = 1736
Score = 32.1 bits (71), Expect = 6.8
Identities = 19/80 (23%), Positives = 33/80 (40%), Gaps = 7/80 (8%)
Query: 247 DNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADH 306
D + P D T+ D + +P E++ ++S+ PP E E + TAD
Sbjct: 274 DYEPPYYDVMTTGTTPDY-------QDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADR 326
Query: 307 YIDSDSQSDADTPPDGAYPH 326
+ + PP+G Y +
Sbjct: 327 FQAEEYGEGGTDPPEGPYDY 346
>gi|112945|sp|P14196|AAC2_DICDI AAC-RICH MRNA CLONE AAC11 PROTEIN
>gi|84120|pir||S05355 hypothetical protein (clone AAC11)
- slime mold (Dictyostelium discoideum) (fragment)
>gi|7174|emb|CAA34529| (X16522) coding region (AA 448)
[Dictyostelium discoideum]
Length = 448
Score = 31.7 bits (70), Expect = 8.9
Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 194 HNNHRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPST 253
+NN+ + + + + N S + + + + + NT+ N + T+N+ +
Sbjct: 273 NNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNI 332
Query: 254 DNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTP-PNEHEDNTINKTSTADHYIDSDS 312
+N ++ T+ + N NT+ + + +N+ P N H++N N TS +S++
Sbjct: 333 NNNNNN--TNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNNNNNTSN-----NSNT 385
Query: 313 QSDADTPPDG 322
+ T P G
Sbjct: 386 TTATTTAPGG 395
>gi|644840 (U19969) ZEB [Homo sapiens]
Length = 1154
Score = 31.7 bits (70), Expect = 8.9
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 11/153 (7%)
Query: 178 LSDLKDIGELEPQLPLHNN----HRHTAQLQIQTDQTPNRSISGTTAPISGISPQPTQEV 233
LS K GEL ++PL T +L + + S + P+ + P +
Sbjct: 771 LSLPKQQGELLERIPLPEQCLFCPGRTLELVLAKKEPQKDSCVTDSEPVVNVIPPSANPI 830
Query: 234 NTDTQT------NIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSV 287
N T I N P +++ T LI ++T+ P P V
Sbjct: 831 NIAIPTVTAQLPTIVAIADQNSVPCLRALAANKQTILIPQVAYTYSTTVSPAVQEPPLKV 890
Query: 288 TPPNEHEDNTINKTSTADHYIDSDSQSDADTPP 320
PN ++D + +S ++ + SD+ TPP
Sbjct: 891 IQPNGNQDERQDTSSEGVSNVEDQNDSDS-TPP 922
>gi|1834361|emb|CAB06616| (Z84818) GP80 [Bovine herpesvirus 4]
Length = 273
Score = 31.7 bits (70), Expect = 8.9
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 210 TPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDLITIDL 269
+P+ S +TA S SP T T T T+ + T + +T + T+ ++T L T
Sbjct: 66 SPSSSSVPSTATSSSSSPTSTPTATTTTATSSTSTNTTSSVSTTVSSTASQSTTL-TSTS 124
Query: 270 ENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPP 320
N T+ P N+ T + STA +S + + T P
Sbjct: 125 TNQTTNTTTTSSTPSNTTT----------SSVSTAVSSTESPNTTLTSTAP 165
>gi|2144179|pir||JC4991 detergent sensitivity rescuer -
Brevibacterium lactofermentum >gi|3767579|dbj|BAA33848|
(AB018530) dtsR [Corynebacterium glutamicum]
>gi|3767581|dbj|BAA33849| (AB018531) dtsR1
[Corynebacterium glutamicum]
Length = 543
Score = 31.7 bits (70), Expect = 8.9
Identities = 28/123 (22%), Positives = 50/123 (39%), Gaps = 15/123 (12%)
Query: 205 IQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATDL 264
+ D+T ++G + + TQE T++ T + +TD + D DL
Sbjct: 200 VMVDKTSKMFVTGPDVIKTVTGEEITQEELGGATTHMVTAGNSHYTAATDEEALDWVQDL 259
Query: 265 ITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTPPDGAY 324
++ L ++N S PLED + E+ + + TAD D + D P
Sbjct: 260 VSF-LPSNNRSYTPLEDF---------DEEEGGVEENITAD-----DLKLDEIIPDSATV 304
Query: 325 PHE 327
P++
Sbjct: 305 PYD 307
>gi|3860185|gb|AAC72981.1| (AF101438) Polycomb homolog Pc1 [Xenopus
laevis]
Length = 471
Score = 31.7 bits (70), Expect = 8.9
Identities = 48/219 (21%), Positives = 78/219 (34%), Gaps = 28/219 (12%)
Query: 104 ETLALIAYRQPITRGEIEQIRGVAVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAF 163
E L+ IA P T+ R ++ S+I+H + R+ + PG+ T A
Sbjct: 219 ELLSSIAKNSP-TQPNGSSPRSLSWQSSIVHYMN-----RINQNSSQPGRKPASSTFNAK 272
Query: 164 LDYFGLKRLDELPPLSDLKDIGELEPQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAPIS 223
K L P S+ E+ P +P T++L +QT + ++ +
Sbjct: 273 RSCLDAKSL--FKPRSE----AEISPAMP------KTSKLHENEEQTHSHTVQPAPTVAA 320
Query: 224 GISPQPTQEVNTDTQTN--IATDITDNDQPSTDNQTSDRATDLITI---DLENHNTSPFP 278
G + P+Q T+T A +T +T A + T D T
Sbjct: 321 GSNENPSQNAPVQTKTQGMRAVVVTSPTSQNTQKSNGSHAVGVATSCKGDKIGKKTGV-- 378
Query: 279 LEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDAD 317
V + + P E T + AD DS D+D
Sbjct: 379 ---VTEPTAHPATERAQPTEGQRDVADLSTGDDSSLDSD 414
>gi|3878644|emb|CAB03208.1| (Z81103) predicted using Genefinder;
cDNA EST yk303g11.5 comes from this gene; cDNA EST
yk303g11.3 comes from this gene [Caenorhabditis elegans]
Length = 430
Score = 31.7 bits (70), Expect = 8.9
Identities = 37/163 (22%), Positives = 67/163 (40%), Gaps = 21/163 (12%)
Query: 172 LDELPPLSDLKDIGELEPQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAP-ISGISPQ-- 228
L+E L+ +G +PQ N + + + T Q P +++ T+A I ISPQ
Sbjct: 116 LEETRQQKKLQGVGISDPQ-----NAKTSLRDITLTQQQPLQTLPVTSANGIGRISPQRT 170
Query: 229 ------PTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATD------LITIDLENHNTSP 276
PT + T N+ +T + + Q + RA D L ++ +H +P
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVLT-HQRLLQMTQANPRAVDDLIQQSLRSLGPNSHLLAP 229
Query: 277 FPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTP 319
F + +P + + P + E + K D+Q+ +P
Sbjct: 230 FMMSMLPSTTYSNPRKRESDEEQKPEIYGKVQRGDAQTTTASP 272
>gi|42341|emb|CAA47821| (X67475) pectate lyase [Erwinia
chrysanthemi]
Length = 375
Score = 31.7 bits (70), Expect = 8.9
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 239 TNIATDITDNDQPSTDNQTSDRATDLITIDLENHNTSPFPLEDVPDNSVTPPNEHEDNTI 298
T+ ++ N Q ++ + A + +T + N + L++ N++T P + +I
Sbjct: 260 TSSGLNVRQNGQALIESNWFENAVNPVTSRYDGKNFGTWVLKN---NNITKPADFSTYSI 316
Query: 299 NKTSTADHYIDSDSQSDADTPPDGAYPH 326
T+ Y+++DS + T P AY +
Sbjct: 317 TWTADTKAYVNADSWTSTGTFPTVAYSY 344
>gi|4008381|emb|CAB03213.1| (Z81103) cDNA EST yk274b6.5 comes from
this gene; cDNA EST yk283a12.5 comes from this gene;
cDNA EST yk345c2.5 comes from this gene; cDNA EST
yk361h6.5 comes from this gene; cDNA EST yk476a9.5 comes
from this gene; cDNA EST y...
Length = 403
Score = 31.7 bits (70), Expect = 8.9
Identities = 37/163 (22%), Positives = 67/163 (40%), Gaps = 21/163 (12%)
Query: 172 LDELPPLSDLKDIGELEPQLPLHNNHRHTAQLQIQTDQTPNRSISGTTAP-ISGISPQ-- 228
L+E L+ +G +PQ N + + + T Q P +++ T+A I ISPQ
Sbjct: 89 LEETRQQKKLQGVGISDPQ-----NAKTSLRDITLTQQQPLQTLPVTSANGIGRISPQRT 143
Query: 229 ------PTQEVNTDTQTNIATDITDNDQPSTDNQTSDRATD------LITIDLENHNTSP 276
PT + T N+ +T + + Q + RA D L ++ +H +P
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVLT-HQRLLQMTQANPRAVDDLIQQSLRSLGPNSHLLAP 202
Query: 277 FPLEDVPDNSVTPPNEHEDNTINKTSTADHYIDSDSQSDADTP 319
F + +P + + P + E + K D+Q+ +P
Sbjct: 203 FMMSMLPSTTYSNPRKRESDEEQKPEIYGKVQRGDAQTTTASP 245
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.313 0.132 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95830618
Number of Sequences: 449381
Number of extensions: 4101693
Number of successful extensions: 12303
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 11247
Number of HSP's gapped (non-prelim): 523
length of query: 327
length of database: 138,416,789
effective HSP length: 57
effective length of query: 270
effective length of database: 112,802,072
effective search space: 30456559440
effective search space used: 30456559440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 70 (31.7 bits)