BLASTP 2.0.10 [Aug-26-1999]
Query= XF-0.4-GL1761
(132 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1173281|sp|P44377|RS8_HAEIN 30S RIBOSOMAL PROTEIN S8 >gi|107... 152 1e-36
gi|1173280|sp|P02361|RS8_ECOLI 30S RIBOSOMAL PROTEIN S8 >gi|606... 146 5e-35
gi|70908|pir||R3EC8 ribosomal protein S8 - Escherichia coli >gi... 145 1e-34
gi|1173278|sp|P46180|RS8_ACYKS 30S RIBOSOMAL PROTEIN S8 >gi|632... 143 4e-34
gi|4512418|dbj|BAA75285.1| (AB017508) rpsH homologue (identity ... 124 3e-28
gi|3122821|sp|O24702|RS8_SYNP6 30S RIBOSOMAL PROTEIN S8 >gi|244... 122 1e-27
gi|2829478|sp|P56209|RS8_BACST 30S RIBOSOMAL PROTEIN S8 (BS8) 119 8e-27
gi|243179|bbs|78254 ribosomal protein S8 [Bacillus stearothermo... 118 2e-26
gi|1173279|sp|P12879|RS8_BACSU 30S RIBOSOMAL PROTEIN S8 (BS8) >... 115 1e-25
gi|1710709|sp|P51301|RR8_PORPU CHLOROPLAST 30S RIBOSOMAL PROTEI... 115 2e-25
gi|6226111|sp|P95066|RS8_MYCTU 30S RIBOSOMAL PROTEIN S8 >gi|180... 114 4e-25
gi|2500421|sp|P73307|RS8_SYNY3 30S RIBOSOMAL PROTEIN S8 >gi|165... 114 4e-25
gi|1644197|dbj|BAA10980| (D64125) ribosomal protein S8 [Bacillu... 113 6e-25
gi|134021|sp|P04446|RS8_MYCCA 30S RIBOSOMAL PROTEIN S8 >gi|7090... 112 1e-24
gi|3122829|sp|O32997|RS8_MYCLE 30S RIBOSOMAL PROTEIN S8 >gi|234... 111 2e-24
gi|3914871|sp|O46907|RR8_GUITH CHLOROPLAST 30S RIBOSOMAL PROTEI... 111 2e-24
gi|1350901|sp|P49496|RR8_ODOSI CHLOROPLAST 30S RIBOSOMAL PROTEI... 108 2e-23
gi|70911|pir||R3KT8 ribosomal protein S8 - Cyanophora paradoxa ... 108 2e-23
gi|4982050|gb|AAD36552.1|AE001798_17 (AE001798) ribosomal prote... 108 2e-23
gi|1334346|emb|CAA34549| (X16548) ribosomal protein S8 (AA 1-13... 108 2e-23
gi|6459906|gb|AAF11659.1|AE002046_5 (AE002046) ribosomal protei... 106 6e-23
gi|1350900|sp|P14826|RR8_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S... 105 1e-22
gi|417724|sp|P33106|RS8_MICLU 30S RIBOSOMAL PROTEIN S8 >gi|3220... 105 2e-22
gi|134024|sp|P24319|RS8_THETH 30S RIBOSOMAL PROTEIN S8 >gi|9473... 103 5e-22
gi|625664|pir||A53870 ribosomal protein S8 - Thermus aquaticus ... 102 1e-21
gi|6466338|gb|AAF12920.1|AF022186_42 (AF022186) unknown; 30S ri... 102 2e-21
gi|3318726|pdb|1AN7|A Chain A, Ribosomal Protein S8 From Thermu... 101 2e-21
gi|5880699|gb|AAD54792.1|AF137379_15 (AF137379) ribosomal prote... 100 6e-21
gi|3024575|sp|P56361|RR8_CHLVU CHLOROPLAST 30S RIBOSOMAL PROTEI... 99 2e-20
gi|6647797|sp|Q9Z7S0|RS8_CHLPN 30S RIBOSOMAL PROTEIN S8 >gi|437... 98 3e-20
gi|3914926|sp|O52346|RS8_MYCGA 30S RIBOSOMAL PROTEIN S8 >gi|276... 97 7e-20
gi|3980236|emb|CAA79791| (Z21677) ribosomal protein S8 [Thermot... 96 9e-20
gi|6094197|sp|O83233|RS8_TREPA 30S RIBOSOMAL PROTEIN S8 >gi|332... 95 2e-19
gi|2500420|sp|Q50304|RS8_MYCPN 30S RIBOSOMAL PROTEIN S8 >gi|212... 94 3e-19
gi|134019|sp|P06362|RR8_MARPO CHLOROPLAST 30S RIBOSOMAL PROTEIN... 93 8e-19
gi|5163218|gb|AAD40597.1|AF115283_16 (AF115283) ribosomal prote... 93 1e-18
gi|6226112|sp|Q9ZCR9|RS8_RICPR 30S RIBOSOMAL PROTEIN S8 >gi|386... 92 2e-18
gi|1351015|sp|P49399|RS8_STRCO 30S RIBOSOMAL PROTEIN S8 >gi|107... 90 7e-18
gi|6606536|gb|AAF19197.1|AF206521_1 (AF206521) ribosomal protei... 90 7e-18
gi|6723785|emb|CAB67195.1| (AJ271079) ribosomal protein S8 [Oen... 90 9e-18
gi|1351013|sp|P47411|RS8_MYCGE 30S RIBOSOMAL PROTEIN S8 >gi|136... 89 1e-17
gi|134012|sp|P28544|RS8_CHLTR 30S RIBOSOMAL PROTEIN S8 >gi|2821... 88 3e-17
gi|3328952|gb|AAC68116.1| (AE001323) S8 Ribosomal Protein [Chla... 88 3e-17
gi|229581|prf||763059A protein S8 [Escherichia coli] 87 4e-17
gi|1173283|sp|P41634|RR8_PINTH CHLOROPLAST 30S RIBOSOMAL PROTEI... 87 8e-17
gi|6685916|sp|P56801|RR8_ARATH CHLOROPLAST 30S RIBOSOMAL PROTEI... 86 1e-16
gi|134025|sp|P06363|RR8_TOBAC CHLOROPLAST 30S RIBOSOMAL PROTEIN... 85 2e-16
gi|134022|sp|P12148|RR8_ORYSA CHLOROPLAST 30S RIBOSOMAL PROTEIN... 85 2e-16
gi|4007874 (AF050665) ribosomal protein S8 [Spirogyra maxima] 85 2e-16
gi|134018|sp|P08530|RR8_MAIZE CHLOROPLAST 30S RIBOSOMAL PROTEIN... 84 4e-16
gi|3914925|sp|O51445|RS8_BORBU 30S RIBOSOMAL PROTEIN S8 >gi|268... 83 1e-15
gi|134015|sp|P21508|RR8_EUGGR CHLOROPLAST 30S RIBOSOMAL PROTEIN... 82 2e-15
gi|266980|sp|P30058|RR8_EPIVI CHLOROPLAST 30S RIBOSOMAL PROTEIN... 80 1e-14
gi|4165878 (AF040101) ribosomal protein S8 [Aquifex pyrophilus] 78 2e-14
gi|6647795|sp|O67566|RS8_AQUAE 30S RIBOSOMAL PROTEIN S8 >gi|298... 77 7e-14
gi|134010|sp|P24353|RR8_ASTLO CHLOROPLAST 30S RIBOSOMAL PROTEIN... 76 9e-14
gi|2500419|sp|P56015|RS8_HELPY 30S RIBOSOMAL PROTEIN S8 >gi|231... 76 1e-13
gi|6692660|gb|AAF24803.1|U17009_36 (U17009) ribosomal protein S... 70 6e-12
gi|1514659|emb|CAA62287.1| (X90765) ribosomal protein S8 [Therm... 70 8e-12
gi|1491728|emb|CAA67852.1| (X99495) homologous to rice rps8 gen... 62 2e-09
gi|417732|sp|P26868|RT08_MARPO MITOCHONDRIAL RIBOSOMAL PROTEIN ... 59 1e-08
gi|6066164|gb|AAF03182.1|AF110138_14 (AF110138) ribosomal prote... 53 9e-07
gi|134020|sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8P >gi|709... 52 3e-06
gi|1710778|sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P >gi|21... 51 5e-06
gi|5457758|emb|CAB49248.1| (AJ248284) SSU ribosomal protein S8P... 50 8e-06
gi|6647792|sp|O59432|RS8_PYRHO 30S RIBOSOMAL PROTEIN S8P >gi|32... 49 1e-05
gi|1173308|sp|P46757|RT08_ACACA MITOCHONDRIAL RIBOSOMAL PROTEIN... 49 2e-05
gi|2258347|gb|AAD11881.1| (AF007261) ribosomal protein S8 [Recl... 48 2e-05
gi|3122823|sp|O26126|RS8_METTH 30S RIBOSOMAL PROTEIN S8P >gi|26... 46 9e-05
gi|6322271|ref|NP_012345.1|RPS22A| Ribosomal protein S22A (S24A... 45 3e-04
gi|6323399|ref|NP_013471.1|RPS22B| Ribosomal protein S22B (S24B... 45 3e-04
gi|464711|sp|P33953|RS22_KLUMA 40S RIBOSOMAL PROTEIN S22 (S15A)... 45 4e-04
gi|2429452|gb|AAB70989.1| (AF025460) contains similarity to Pfa... 44 5e-04
gi|134016|sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8P (HMAS8)... 43 8e-04
gi|1173220|sp|P39027|RS1A_HUMAN 40S RIBOSOMAL PROTEIN S15A >gi|... 43 0.001
gi|3169080|emb|CAA19274.1| (AL023705) hypothetical protein [Sch... 43 0.001
gi|3758866|emb|CAB11151.1| (Z98551) predicted using hexExon; MA... 42 0.002
gi|1350954|sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A >gi|... 42 0.002
gi|4506689|ref|NP_001010.1|| ribosomal protein S15a >gi|1082767... 42 0.002
gi|1173217|sp|P46792|RS22_AGABI 40S RIBOSOMAL PROTEIN S22 (S15A... 41 0.003
gi|6015773|emb|CAB57600.1| (Y18930) ribosomal protein S8 (HMAS8... 41 0.003
gi|6683481|dbj|BAA89231.1| (AB018560) wrp15a [Citrullus lanatus] 41 0.003
gi|3355488|gb|AAC27850.1| (AC004218) 40S ribosomal protein S15A... 41 0.004
gi|2811038|sp|O05636|RS8_SULAC 30S RIBOSOMAL PROTEIN S8P >gi|20... 40 0.007
gi|6685937|sp|Q9YF89|RS8_AERPE 30S RIBOSOMAL PROTEIN S8P >gi|51... 40 0.007
gi|1173218|sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A >gi|... 40 0.009
gi|6094170|sp|O14469|RS22_SCHPO 40S RIBOSOMAL PROTEIN S22 >gi|2... 40 0.009
gi|133793|sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB... 39 0.012
gi|5931793|emb|CAB56626.1| (AJ249788) ribosomal protein 22 of t... 39 0.012
gi|2130985|emb|CAA42600| (X59984) r-protein BnS15a [Brassica na... 39 0.020
gi|3914919|sp|O28369|RS8_ARCFU 30S RIBOSOMAL PROTEIN S8P >gi|26... 38 0.027
gi|107615|pir||S22051 ribosomal protein S15a.e - human >gi|3614... 38 0.046
gi|417715|sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24)... 37 0.060
gi|6323808|ref|NP_013879.1|YMR158W| Ymr158wp >gi|2497166|sp|Q03... 36 0.18
gi|1071975|pir||S05996 ribosomal protein S8 - Bacillus subtilis... 33 1.2
gi|2119072|pir||JC4713 ribosomal protein S24 - sea urchin (Para... 33 1.2
gi|1710747|sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24... 32 2.0
gi|1173219|sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24... 31 3.5
gi|134023|sp|P09597|RR8_SPIOL CHLOROPLAST 30S RIBOSOMAL PROTEIN... 31 4.5
gi|1173282|sp|P42343|RR8_OENAM CHLOROPLAST 30S RIBOSOMAL PROTEI... 31 4.5
gi|40154|emb|CAA33705| (X15664) S8 protein (AA 1-23) [Bacillus ... 30 7.8
>gi|1173281|sp|P44377|RS8_HAEIN 30S RIBOSOMAL PROTEIN S8
>gi|1075278|pir||A64094 ribosomal protein S8 (rpS8)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573802 (U32762) ribosomal protein S8 (rpS8)
[Haemophilus influenzae Rd]
Length = 130
Score = 152 bits (380), Expect = 1e-36
Identities = 74/132 (56%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MSM DPIADML RI N + K + P S++K+AIA VL EGYI KV++G +K +
Sbjct: 1 MSMQDPIADMLTRIRNGQAANKVAINMPSSKLKVAIANVLAAEGYIESVKVLEG--AKPE 58
Query: 61 IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
+EI LKYF+G+PV+ ++RVSR GLR Y K ELPKV+GGLG+++ISTSKG+M D AR+
Sbjct: 59 LEITLKYFQGKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGVAVISTSKGVMTDRAARQ 118
Query: 121 SGVGGEVLCFVA 132
+G+GGE++C+VA
Sbjct: 119 AGLGGEIICYVA 130
>gi|1173280|sp|P02361|RS8_ECOLI 30S RIBOSOMAL PROTEIN S8
>gi|606240|gb|AAA58103.1| (U18997) 30S ribosomal subunit
protein S8 [Escherichia coli] >gi|1789702 (AE000408) 30S
ribosomal subunit protein S8, and regulator [Escherichia
coli]
Length = 130
Score = 146 bits (366), Expect = 5e-35
Identities = 74/132 (56%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MSM DPIADML RI N + K V P S++K+AIA VLK EG+I D KV +GD +K +
Sbjct: 1 MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKV-EGD-TKPE 58
Query: 61 IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
+E+ LKYF+G+ V+ ++RVSR GLR Y K ELPKV+ GLGI+++STSKG+M D AR+
Sbjct: 59 LELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQ 118
Query: 121 SGVGGEVLCFVA 132
+G+GGE++C+VA
Sbjct: 119 AGLGGEIICYVA 130
>gi|70908|pir||R3EC8 ribosomal protein S8 - Escherichia coli
>gi|42983|emb|CAA25719| (X01563) S8 (rpSH) (aa 1-130)
[Escherichia coli]
Length = 130
Score = 145 bits (363), Expect = 1e-34
Identities = 73/132 (55%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MSM DPIADML RI N + K V P S++K+AIA VLK EG+I D KV +GD +K +
Sbjct: 1 MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKV-EGD-TKPE 58
Query: 61 IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
+E+ LKYF+G+ V+ ++RVSR GLR Y K +LPKV+ GLGI+++STSKG+M D AR+
Sbjct: 59 LELTLKYFQGKAVVESIQRVSRPGLRIYKRKDQLPKVMAGLGIAVVSTSKGVMTDRAARQ 118
Query: 121 SGVGGEVLCFVA 132
+G+GGE++C+VA
Sbjct: 119 AGLGGEIICYVA 130
>gi|1173278|sp|P46180|RS8_ACYKS 30S RIBOSOMAL PROTEIN S8
>gi|632239|pir||JC2280 ribosomal protein S8 - Pea aphid
symbiont bacterium >gi|710619|dbj|BAA06589| (D31786)
ribosomal protein S8 [Acyrthosiphon kondoi endosymbiont]
Length = 130
Score = 143 bits (358), Expect = 4e-34
Identities = 72/132 (54%), Positives = 97/132 (72%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MSM DPIADML RI N + K V P S++K+AIA VLK EG+I D K+ G +K
Sbjct: 1 MSMQDPIADMLTRIRNGQAANKVAVTMPSSKLKVAIANVLKEEGFIEDFKIEGG--TKPV 58
Query: 61 IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
+E+VLKYF+G V+ ++R+SR GLR Y K ELPKV+ GLGI+++STSKG+M D AR+
Sbjct: 59 LELVLKYFQGNAVVESIQRISRPGLRIYKKKDELPKVMAGLGIAVVSTSKGVMTDRAARQ 118
Query: 121 SGVGGEVLCFVA 132
+G+GGE++C+VA
Sbjct: 119 AGLGGEIICYVA 130
>gi|4512418|dbj|BAA75285.1| (AB017508) rpsH homologue (identity of
82% to B. subtilis ) [Bacillus halodurans]
Length = 132
Score = 124 bits (308), Expect = 3e-28
Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M MTDPI+DML RI NA +V + P S++K IA +LK EG+I D + I+ D+ +
Sbjct: 1 MVMTDPISDMLTRIRNANTVRHEKLELPASKIKKEIAEILKREGFIRDYEYIE-DSKQGV 59
Query: 61 IEIVLKYFEGRP-VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I I LKY VI LKR+S+ GLR Y ELP+VLGGLGI+I+STSKG+M D +AR
Sbjct: 60 IRIFLKYGSSNERVITGLKRISKPGLRVYAKAGELPRVLGGLGIAIVSTSKGVMTDKEAR 119
Query: 120 ESGVGGEVLCFV 131
+ VGGEVL +V
Sbjct: 120 QQQVGGEVLAYV 131
>gi|3122821|sp|O24702|RS8_SYNP6 30S RIBOSOMAL PROTEIN S8
>gi|2446903|dbj|BAA22462| (AB000111) 30S ribosomal
protein S8 [Synechococcus sp.]
Length = 133
Score = 122 bits (303), Expect = 1e-27
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 3/133 (2%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M++ DPIADML RI NA+ P SR+ +IA VLK EG+I D + G+ +
Sbjct: 1 MAVNDPIADMLTRIRNASEARHATTVVPASRLARSIAEVLKREGFIADFEE-SGEGVQRH 59
Query: 61 IEIVLKYF--EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKA 118
+ + LKY +P+I+ LKRVS+ GLR Y + +LP+VLGG+GI+IISTS+GIM D A
Sbjct: 60 LVLSLKYKGKNQQPIIKALKRVSKPGLRVYSNRRDLPRVLGGIGIAIISTSQGIMTDRDA 119
Query: 119 RESGVGGEVLCFV 131
R GVGGEVLC+V
Sbjct: 120 RRQGVGGEVLCYV 132
>gi|2829478|sp|P56209|RS8_BACST 30S RIBOSOMAL PROTEIN S8 (BS8)
Length = 131
Score = 119 bits (296), Expect = 8e-27
Identities = 63/131 (48%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M MTDPIADML I NA V + P S++K IA +LK EG+I D + I+ DN +
Sbjct: 1 MVMTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIE-DNKQGI 59
Query: 61 IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
+ I LKY VI LKR+S+ GLR Y E+P+VL GLGI+I+STS+G++ D +AR+
Sbjct: 60 LRIFLKYGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQ 119
Query: 121 SGVGGEVLCFV 131
G GGE++ +V
Sbjct: 120 KGTGGEIIAYV 130
>gi|243179|bbs|78254 ribosomal protein S8 [Bacillus
stearothermophilus, Peptide, 130 aa]
>gi|1942032|pdb|1SEI|A Chain A, Structure Of 30s
Ribosomal Protein S8 >gi|1942033|pdb|1SEI|B Chain B,
Structure Of 30s Ribosomal Protein S8
Length = 130
Score = 118 bits (293), Expect = 2e-26
Identities = 62/129 (48%), Positives = 85/129 (65%), Gaps = 1/129 (0%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
MTDPIADML I NA V + P S++K IA +LK EG+I D + I+ DN + +
Sbjct: 2 MTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIE-DNKQGILR 60
Query: 63 IVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESG 122
I LKY VI LKR+S+ GLR Y E+P+VL GLGI+I+STS+G++ D +AR+ G
Sbjct: 61 IFLKYGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKG 120
Query: 123 VGGEVLCFV 131
GGE++ +V
Sbjct: 121 TGGEIIAYV 129
>gi|1173279|sp|P12879|RS8_BACSU 30S RIBOSOMAL PROTEIN S8 (BS8)
>gi|1044978 (L47971) ribosomal protein S8 [Bacillus
subtilis]
Length = 132
Score = 115 bits (286), Expect = 1e-25
Identities = 64/132 (48%), Positives = 86/132 (64%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M MTDPIADML RI NA V + P S++K IA +LK EG+I D + ++ D+ +
Sbjct: 1 MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVE-DSKQGI 59
Query: 61 IEIVLKYFEGRP-VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I + LKY + VI LKR+S+ GLR Y E+P+VL GLGI+IISTS+G++ D +AR
Sbjct: 60 IRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEAR 119
Query: 120 ESGVGGEVLCFV 131
GGEVL +V
Sbjct: 120 AKQAGGEVLAYV 131
>gi|1710709|sp|P51301|RR8_PORPU CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|2147039|pir||S73222 30S ribosomal protein S8 -
Porphyra purpurea chloroplast >gi|1276767 (U38804) 30S
ribosomal protein S8 [Porphyra purpurea]
Length = 133
Score = 115 bits (285), Expect = 2e-25
Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 3/133 (2%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M + D +ADML RI NA V+ P ++V +ALVLK EG++ + + + G+ ++
Sbjct: 1 MVVNDTVADMLTRIRNANLARHQIVQVPATKVTRNMALVLKEEGFVHNFEQM-GEGIETH 59
Query: 61 IEIVLKYF--EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKA 118
+ I LKY +PVI LKR+S+ GLR Y ELP+VLGGLGI+IISTS+G+M D +A
Sbjct: 60 LMISLKYNGKNRQPVITALKRISKPGLRVYANHKELPRVLGGLGIAIISTSQGVMTDRQA 119
Query: 119 RESGVGGEVLCFV 131
R G+GGE+LC++
Sbjct: 120 RHDGLGGEILCYI 132
>gi|6226111|sp|P95066|RS8_MYCTU 30S RIBOSOMAL PROTEIN S8
>gi|1806186|emb|CAB06442| (Z84395) rpsH [Mycobacterium
tuberculosis]
Length = 132
Score = 114 bits (282), Expect = 4e-25
Identities = 66/132 (50%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M+MTDPIAD L R+ NA S V P S++K IA +LK+EGYI D + KS
Sbjct: 1 MTMTDPIADFLTRLRNANSAYHDEVSLPHSKLKANIAQILKNEGYISDFRTEDARVGKS- 59
Query: 61 IEIVLKYFEGRP-VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
+ I LKY R I L+RVS+ GLR Y LP+VLGGLG++IISTS G++ D +A
Sbjct: 60 LVIQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAA 119
Query: 120 ESGVGGEVLCFV 131
GVGGEVL +V
Sbjct: 120 RQGVGGEVLAYV 131
>gi|2500421|sp|P73307|RS8_SYNY3 30S RIBOSOMAL PROTEIN S8
>gi|1652414|dbj|BAA17336| (D90905) 30S ribosomal protein
S8 [Synechocystis sp.]
Length = 133
Score = 114 bits (282), Expect = 4e-25
Identities = 59/132 (44%), Positives = 88/132 (65%), Gaps = 1/132 (0%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFD-AKVIQGDNSKS 59
M+ TD I+DML RI NA +V + P +++ L+IA VLK EG+I D ++ +G N
Sbjct: 1 MASTDTISDMLTRIRNACAVRHSTTQVPTTKMTLSIAKVLKSEGFIEDYSETGEGINKML 60
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
+ + K +P+I L+RVS+ GLR Y ++P+VLGG+GI+I+STS GIM D +AR
Sbjct: 61 VLTLKYKGKTRQPLINTLQRVSKPGLRVYSPSKKIPRVLGGIGIAIVSTSHGIMTDREAR 120
Query: 120 ESGVGGEVLCFV 131
G+GGE+LC++
Sbjct: 121 RQGIGGEILCYI 132
>gi|1644197|dbj|BAA10980| (D64125) ribosomal protein S8 [Bacillus
subtilis] >gi|2632397|emb|CAB11906| (Z99104) ribosomal
protein S8 (BS8) [Bacillus subtilis]
Length = 132
Score = 113 bits (280), Expect = 6e-25
Identities = 63/132 (47%), Positives = 85/132 (63%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M MTDPIADML RI NA V + P S++K I +LK EG+I D + ++ D+ +
Sbjct: 1 MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIPEILKREGFIRDVEFVE-DSKQGI 59
Query: 61 IEIVLKYFEGRP-VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I + LKY + VI LKR+S+ GLR Y E+P+VL GLGI+IISTS+G++ D +AR
Sbjct: 60 IRVSLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEAR 119
Query: 120 ESGVGGEVLCFV 131
GGEVL +V
Sbjct: 120 AKQAGGEVLAYV 131
>gi|134021|sp|P04446|RS8_MYCCA 30S RIBOSOMAL PROTEIN S8
>gi|70909|pir||R3YM8 ribosomal protein S8 - Mycoplasma
capricolum (SGC3) >gi|44223|emb|CAA29718| (X06414)
ribosomal protein S8 (AA 1-129) [Mycoplasma capricolum]
>gi|4379153|emb|CAA25590| (X01121) ribosomal protein S8
(aa 1-128) [Mycoplasma capricolum]
Length = 129
Score = 112 bits (277), Expect = 1e-24
Identities = 68/128 (53%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 4 TDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEI 63
TD IADML RI NA V P S+VKL IA +LK EG+I D V +GD K+ I I
Sbjct: 3 TDVIADMLTRIRNANQRYLKTVSVPSSKVKLEIARILKEEGFISDFTV-EGDVKKT-INI 60
Query: 64 VLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGV 123
LKY VI+ LK++S+ GLR Y E+P+VL GLGISI+STS+GIM KAR +
Sbjct: 61 ELKYQGKTRVIQGLKKISKPGLRVYAQANEIPQVLNGLGISIVSTSQGIMTGKKARLANA 120
Query: 124 GGEVLCFV 131
GGEVL F+
Sbjct: 121 GGEVLAFI 128
>gi|3122829|sp|O32997|RS8_MYCLE 30S RIBOSOMAL PROTEIN S8
>gi|2344848|emb|CAB11450| (Z98756) ribosomal protein S8
[Mycobacterium leprae]
Length = 132
Score = 111 bits (276), Expect = 2e-24
Identities = 67/132 (50%), Positives = 81/132 (60%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M+MTDPIAD L R+ NA S V P S +K IA +LK+EGYI D + KS
Sbjct: 1 MTMTDPIADFLTRLRNANSAYHDEVTVPHSNIKANIAQILKNEGYIRDFRTEDARVGKSL 60
Query: 61 IEIVLKYFEGRP-VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I I LKY R I L+RVS+ GLR Y LP+VLGGLG+ IISTS G++ D +A
Sbjct: 61 I-IQLKYGPSRERSIAGLRRVSKPGLRVYAKSINLPRVLGGLGVVIISTSSGLLTDRQAA 119
Query: 120 ESGVGGEVLCFV 131
GVGGEVL +V
Sbjct: 120 RQGVGGEVLAYV 131
>gi|3914871|sp|O46907|RR8_GUITH CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|3603055|gb|AAC35716| (AF041468) ribosomal protein S8
[Guillardia theta]
Length = 132
Score = 111 bits (275), Expect = 2e-24
Identities = 59/128 (46%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGD-NSKSDIEI 63
D ++DML R+ NA V+ P +++ +IA VL EG+I + + D N + + +
Sbjct: 4 DTVSDMLTRVRNANLAKHQVVQVPATKMTKSIAHVLLEEGFIESIEEVGLDINRQLLLSL 63
Query: 64 VLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGV 123
K E PVI LKR+SR GLR Y + ELP+VLGGLGI++ISTSKG++ D+KAR G+
Sbjct: 64 KYKGREREPVINALKRISRPGLRVYANRKELPRVLGGLGIAVISTSKGVLTDTKARTQGL 123
Query: 124 GGEVLCFV 131
GGEVLC++
Sbjct: 124 GGEVLCYI 131
>gi|1350901|sp|P49496|RR8_ODOSI CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|1185152|emb|CAA91635| (Z67753) 30S ribosomal protein
S8 [Odontella sinensis]
Length = 132
Score = 108 bits (268), Expect = 2e-23
Identities = 63/132 (47%), Positives = 88/132 (65%), Gaps = 5/132 (3%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+TD I+DML RI NA + V+ P +++ AI +LK EG+I D ++ +NS +
Sbjct: 2 VTDTISDMLTRIRNANMIKHQIVQIPATKMSKAITNILKEEGFIEDYEIYM-ENSYQFLL 60
Query: 63 IVLKYFEGR---PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I LKY +G+ PVI + RVS+ GLR Y +LPKVL LGI+IISTSKG+M + KA+
Sbjct: 61 ISLKY-KGKSREPVICKMVRVSKPGLRVYSKSKKLPKVLDNLGIAIISTSKGVMTNLKAK 119
Query: 120 ESGVGGEVLCFV 131
E G+GGEVLC++
Sbjct: 120 ELGIGGEVLCYI 131
>gi|70911|pir||R3KT8 ribosomal protein S8 - Cyanophora paradoxa
cyanelle
Length = 132
Score = 108 bits (267), Expect = 2e-23
Identities = 61/131 (46%), Positives = 84/131 (63%), Gaps = 3/131 (2%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+ D IADML RI NA R +++ +A VLK EG I + + I+ +N ++++
Sbjct: 2 VNDTIADMLTRIRNANLAKHKVARVKATKITRCLANVLKEEGLIQNFEEIE-NNLQNELL 60
Query: 63 IVLKYF--EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
I LKY + +P+I LKR+S+ GLR Y ELP+VLGGLGI+I+STS GIM D AR
Sbjct: 61 ISLKYKGKKRQPIITALKRISKPGLRVYANHKELPRVLGGLGIAILSTSSGIMTDQTARH 120
Query: 121 SGVGGEVLCFV 131
G GGEVLC++
Sbjct: 121 KGCGGEVLCYI 131
>gi|4982050|gb|AAD36552.1|AE001798_17 (AE001798) ribosomal protein
S8 [Thermotoga maritima]
Length = 134
Score = 108 bits (267), Expect = 2e-23
Identities = 62/132 (46%), Positives = 82/132 (61%), Gaps = 5/132 (3%)
Query: 4 TDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEI 63
+DPIADML RI NA V K P S +K I +LK EG+I D K I+ D + + +
Sbjct: 3 SDPIADMLTRIRNANMVFKEYTDIPASNLKKKICEILKREGFIADYKYIE-DGKQGILRV 61
Query: 64 VLKYFEGRP----VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
LKY GR VI + RVS +G R Y K +PKV GLGI+I++TSKG++ D +AR
Sbjct: 62 YLKYKGGRKNRERVIHGIVRVSHAGRRIYVDKDHIPKVKNGLGIAILTTSKGVLTDKEAR 121
Query: 120 ESGVGGEVLCFV 131
+ GVGGEV+ +V
Sbjct: 122 QLGVGGEVIAYV 133
>gi|1334346|emb|CAA34549| (X16548) ribosomal protein S8 (AA 1-132)
[Cyanophora paradoxa]
Length = 132
Score = 108 bits (267), Expect = 2e-23
Identities = 61/131 (46%), Positives = 84/131 (63%), Gaps = 3/131 (2%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+ D IADML RI NA R +++ +A VLK EG I + + I+ +N ++++
Sbjct: 2 VNDTIADMLTRIRNANLAKHKVARVKATKITRCLANVLKEEGLIQNFEEIE-NNLQNELL 60
Query: 63 IVLKYF--EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
I LKY + +P+I LKR+S+ GLR Y ELP+VLGGLGI+I+STS GIM D AR
Sbjct: 61 ISLKYKGKKRQPIITALKRISKPGLRVYANHKELPRVLGGLGIAILSTSSGIMTDQTARH 120
Query: 121 SGVGGEVLCFV 131
G GGEVLC++
Sbjct: 121 KGCGGEVLCYI 131
>gi|6459906|gb|AAF11659.1|AE002046_5 (AE002046) ribosomal protein S8
[Deinococcus radiodurans]
Length = 133
Score = 106 bits (263), Expect = 6e-23
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDI- 61
++DPIADML RI NA K V P S+ K +A +L EGY+ + + + K D+
Sbjct: 2 LSDPIADMLTRIRNATRTHKETVDIPASKFKEELAKLLVREGYVQGVERTRPEGQKFDVL 61
Query: 62 EIVLKYFEGRP-VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
+ LKY E R VI+ ++RVSR G R Y LP+V GLG++++STS+G++ D +AR+
Sbjct: 62 RVTLKYGEKREQVIKHIERVSRPGRRAYVSAENLPRVQRGLGVAVVSTSRGLLPDREARQ 121
Query: 121 SGVGGEVLC 129
GVGGEV+C
Sbjct: 122 QGVGGEVVC 130
>gi|1350900|sp|P14826|RR8_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S8
>gi|336652 (M30487) ribosomal protein s8 [Cyanophora
paradoxa] >gi|1016135 (U30821) ribosomal protein S8
[Cyanophora paradoxa]
Length = 132
Score = 105 bits (260), Expect = 1e-22
Identities = 60/131 (45%), Positives = 83/131 (62%), Gaps = 3/131 (2%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+ D IADML I NA R +++ +A VLK EG I + + I+ +N ++++
Sbjct: 2 VNDTIADMLTGIRNANLAKHKVARVKATKITRCLANVLKEEGLIQNFEEIE-NNLQNELL 60
Query: 63 IVLKYF--EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
I LKY + +P+I LKR+S+ GLR Y ELP+VLGGLGI+I+STS GIM D AR
Sbjct: 61 ISLKYKGKKRQPIITALKRISKPGLRGYANHKELPRVLGGLGIAILSTSSGIMTDQTARH 120
Query: 121 SGVGGEVLCFV 131
G GGEVLC++
Sbjct: 121 KGCGGEVLCYI 131
>gi|417724|sp|P33106|RS8_MICLU 30S RIBOSOMAL PROTEIN S8
>gi|322078|pir||S29885 Ribosomal protein S8 -
Micrococcus luteus >gi|44429|emb|CAA35561| (X17524) S8
protein [Micrococcus luteus]
Length = 133
Score = 105 bits (259), Expect = 2e-22
Identities = 61/133 (45%), Positives = 86/133 (63%), Gaps = 3/133 (2%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M+MTDP+ADML R+ NA S V P S++K +A +LK EGYI D + + + K
Sbjct: 1 MTMTDPVADMLTRLRNANSAYHDTVSMPSSKLKTRVAEILKAEGYIQDWREEEAEVGKK- 59
Query: 61 IEIVLKYFEGRP-VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSK-A 118
+ I LK+ R I L+R+S+ GLR Y LP VLGGLGI+I+STS G++ + + A
Sbjct: 60 LTIDLKFGPQRERAIAGLRRISKPGLRVYAKSTNLPHVLGGLGIAILSTSSGLLTNQQAA 119
Query: 119 RESGVGGEVLCFV 131
+++GVGGEVL +V
Sbjct: 120 KKAGVGGEVLAYV 132
>gi|134024|sp|P24319|RS8_THETH 30S RIBOSOMAL PROTEIN S8
>gi|94730|pir||S15441 Ribosomal protein S8 - Thermus
aquaticus >gi|48108|emb|CAA39898| (X56552) ribosomal
protein S8 [Thermus aquaticus]
Length = 138
Score = 103 bits (255), Expect = 5e-22
Identities = 61/137 (44%), Positives = 83/137 (60%), Gaps = 9/137 (6%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+TDPIADML RI NA V K + P SR K I +L EG+I + ++ D K +
Sbjct: 2 LTDPIADMLTRIRNATRVYKESTEVPASRFKEEILKILAREGFIKGYERVEVDG-KPYLR 60
Query: 63 IVLKYFEGRP--------VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMI 114
I LKY R VI+ ++R+SR G R Y G E+P+V GLGI+I+ST KG++
Sbjct: 61 IHLKYGPRRQGPDPRPEQVIKHIRRISRPGRRVYVGVKEIPRVRRGLGIAILSTPKGVLT 120
Query: 115 DSKARESGVGGEVLCFV 131
D +AR+ GVGGE++C V
Sbjct: 121 DREARKLGVGGELICEV 137
>gi|625664|pir||A53870 ribosomal protein S8 - Thermus aquaticus
>gi|265052|bbs|124612 ribosomal protein S8 [Thermus
thermophilus, Peptide, 138 aa] >gi|498771|emb|CAA56094|
(X79551) ribosomal S8 protein [Thermus thermophilus]
Length = 138
Score = 102 bits (252), Expect = 1e-21
Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 9/137 (6%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+TDPIADML RI NA V K + P SR K I +L EG+I + + D K +
Sbjct: 2 LTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDG-KPYLR 60
Query: 63 IVLKYFEGRP--------VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMI 114
+ LKY R VI ++R+S+ G R Y G E+P+V GLGI+I+STSKG++
Sbjct: 61 VYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLT 120
Query: 115 DSKARESGVGGEVLCFV 131
D +AR+ GVGGE++C V
Sbjct: 121 DREARKLGVGGELICEV 137
>gi|6466338|gb|AAF12920.1|AF022186_42 (AF022186) unknown; 30S
ribosomal protein S8 [Cyanidium caldarium]
Length = 133
Score = 102 bits (251), Expect = 2e-21
Identities = 54/132 (40%), Positives = 82/132 (61%), Gaps = 4/132 (3%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+ D I+DML R+ NA V+ P + + I VL+ EGYI + +++ + +
Sbjct: 2 VNDSISDMLTRLRNAICAQHKVVQVPLTNINKNILKVLQKEGYIKNFEILF-ERKSGYLL 60
Query: 63 IVLKYF---EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
+ LKY + +P + +LK++SR GLR Y ++PKVLGG GI+IISTSKG+M S AR
Sbjct: 61 VSLKYNSLNQDKPCLSVLKKISRPGLRMYVRTKKIPKVLGGTGIAIISTSKGVMTGSIAR 120
Query: 120 ESGVGGEVLCFV 131
G+GGE+LC++
Sbjct: 121 NLGIGGEILCYI 132
>gi|3318726|pdb|1AN7|A Chain A, Ribosomal Protein S8 From Thermus
Thermophilus >gi|3318727|pdb|1AN7|B Chain B, Ribosomal
Protein S8 From Thermus Thermophilus
>gi|6137691|pdb|1QD7|G Chain G, Partial Model For 30s
Ribosomal Subunit
Length = 136
Score = 101 bits (250), Expect = 2e-21
Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 4 TDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEI 63
TDPIADML RI NA V K + P SR K I +L EG+I + + D K + +
Sbjct: 1 TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDG-KPYLRV 59
Query: 64 VLKYFEGRP--------VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMID 115
LKY R VI ++R+S+ G R Y G E+P+V GLGI+I+STSKG++ D
Sbjct: 60 YLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTD 119
Query: 116 SKARESGVGGEVLCFV 131
+AR+ GVGGE++C V
Sbjct: 120 REARKLGVGGELICEV 135
>gi|5880699|gb|AAD54792.1|AF137379_15 (AF137379) ribosomal protein
S8 [Nephroselmis olivacea]
Length = 129
Score = 100 bits (246), Expect = 6e-21
Identities = 59/129 (45%), Positives = 82/129 (62%), Gaps = 6/129 (4%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IADML RI NA ++ V P + V IA++L+ EG+I K + S + + +
Sbjct: 4 DTIADMLTRIRNANAMRIYTVCMPMTSVAREIAVILETEGWIDSWK----EASVNSLILR 59
Query: 65 LKY--FEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESG 122
LKY + +P++ L+RVSRSG R Y E+PKVLGG+G +IISTSKGIM D +AR
Sbjct: 60 LKYRGAKQQPILTGLRRVSRSGCRVYVSAKEVPKVLGGMGTAIISTSKGIMTDREARNHR 119
Query: 123 VGGEVLCFV 131
+GGEV+C +
Sbjct: 120 LGGEVICLI 128
>gi|3024575|sp|P56361|RR8_CHLVU CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|2224517|dbj|BAA58001| (AB001684) 30S ribosomal
protein S8 [Chlorella vulgaris]
Length = 138
Score = 98.7 bits (242), Expect = 2e-20
Identities = 56/138 (40%), Positives = 83/138 (59%), Gaps = 11/138 (7%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+ D I+DML RI NA K +V P ++V + +L+ EG+I + + +++
Sbjct: 2 VNDTISDMLTRIRNANLAKKTSVSLPKTKVHEKMCQILEQEGFIKTFSF--SETNTNELI 59
Query: 63 IVLKYFE---------GRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIM 113
+ LKY + G+P I LKR+S+ GLR Y E+PKVLGG+GI I+STSKG+M
Sbjct: 60 VDLKYQDFASFGNYGVGKPCITNLKRISKPGLRIYTNSREIPKVLGGMGILILSTSKGLM 119
Query: 114 IDSKARESGVGGEVLCFV 131
D +AR+ +GGE+LC V
Sbjct: 120 TDRQARKLCLGGEILCSV 137
>gi|6647797|sp|Q9Z7S0|RS8_CHLPN 30S RIBOSOMAL PROTEIN S8
>gi|4376932|gb|AAD18773| (AE001647) S8 Ribosomal Protein
[Chlamydia pneumoniae]
Length = 133
Score = 97.9 bits (240), Expect = 3e-20
Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 1 MSMT-DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M MT D IAD+L RI NA V S+++ AI +LKH+G++ +++ +N K
Sbjct: 1 MGMTSDSIADLLTRIRNALMAEHLYVDVEHSKMREAIVKILKHKGFVAHY-LVKEENRKR 59
Query: 60 DIEIVLKYFEGR-PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKA 118
+ + L+Y + R PVI LKRVS+ R Y A++P V G +GIS++STS+G+M S A
Sbjct: 60 AMRVFLQYSDDRKPVIHQLKRVSKPSRRVYVSAAKIPYVFGNMGISVLSTSQGVMEGSLA 119
Query: 119 RESGVGGEVLCFV 131
R +GGE+LC V
Sbjct: 120 RSKNIGGELLCLV 132
>gi|3914926|sp|O52346|RS8_MYCGA 30S RIBOSOMAL PROTEIN S8 >gi|2766517
(AF036708) ribosomal protein S8 [Mycoplasma
gallisepticum]
Length = 133
Score = 96.7 bits (237), Expect = 7e-20
Identities = 53/129 (41%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQG-DNSKSDIEI 63
DP+AD++ +INNA ++ S++K+AI +L +EGYI ++ + +KS ++I
Sbjct: 4 DPVADIITKINNANRAKIVELQTEASKLKVAILNILLNEGYIRGYEIYDNKEKTKSILKI 63
Query: 64 VLKYFEGR-PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESG 122
LK+ E R + +K++S+ GLR Y +LPKVL GLGI+I+ST++G+M D AR
Sbjct: 64 KLKFDENRVSSLNGIKQISKPGLRIYVSAEKLPKVLNGLGIAIVSTNEGLMTDKLARAKK 123
Query: 123 VGGEVLCFV 131
+GGEVL +V
Sbjct: 124 IGGEVLAYV 132
>gi|3980236|emb|CAA79791| (Z21677) ribosomal protein S8 [Thermotoga
maritima]
Length = 126
Score = 96.3 bits (236), Expect = 9e-20
Identities = 57/126 (45%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 10 MLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKYFE 69
ML RI NA V K P S +K I +LK EG+I D K I+ D + + + LKY
Sbjct: 1 MLTRIRNANMVFKEYTDIPASNLKKKICEILKREGFIADYKYIE-DGKQGILRVYLKYKG 59
Query: 70 GRP----VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGVGG 125
GR VI + RVS +G R Y K +PKV GLGI+I++TSKG++ D +AR GVGG
Sbjct: 60 GRKNRERVIHGIVRVSHAGRRIYVDKDHIPKVKNGLGIAILTTSKGVLTDKEARPVGVGG 119
Query: 126 EVLCFV 131
EV+ +V
Sbjct: 120 EVIAYV 125
>gi|6094197|sp|O83233|RS8_TREPA 30S RIBOSOMAL PROTEIN S8 >gi|3322466
(AE001202) ribosomal protein S8 (rpsH) [Treponema
pallidum]
Length = 132
Score = 95.2 bits (233), Expect = 2e-19
Identities = 54/132 (40%), Positives = 77/132 (57%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M ++DP+ADML +I NAA G V P S++K+ + +LK EGYI + + ++ D S
Sbjct: 1 MGVSDPVADMLTKIRNAARAGHEKVDVPSSKLKVEVVKILKTEGYIRNFRKVEEDGS-GC 59
Query: 61 IEIVLKYFEGR-PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I + LKY + VI ++R+S G R Y G L +V G G I+STS G+ AR
Sbjct: 60 IRVFLKYDDNETSVIHGIERISTPGRRVYSGYKTLRRVYNGYGTLIVSTSLGVTTGRHAR 119
Query: 120 ESGVGGEVLCFV 131
E VGGE++C V
Sbjct: 120 EQRVGGELICKV 131
>gi|2500420|sp|Q50304|RS8_MYCPN 30S RIBOSOMAL PROTEIN S8
>gi|2127658|pir||S62828 ribosomal protein S8 -
Mycoplasma pneumoniae (SGC3) >gi|2146638|pir||S73978
ribosomal protein S8 - Mycoplasma pneumoniae (SGC3)
(ATCC 29342) >gi|1215709 (U34795) RpsH [Mycoplasma
pneumoniae] >gi|1674357 (AE000061) Mycoplasma
pneumoniae, ribosomal protein S8; similar to Swiss-Prot
Accession Number P04446, from M. capricolum [Mycoplasma
pneumoniae]
Length = 142
Score = 94.4 bits (231), Expect = 3e-19
Identities = 55/129 (42%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDN-SKSDIEI 63
DP+AD+L +INNA V S++K+AI +L EGY+ + +V++ + +K +
Sbjct: 13 DPVADLLTKINNARKAKLMTVTTIASKLKIAILEILVKEGYLANFQVLENKSKTKRIVTF 72
Query: 64 VLKYFEGR-PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESG 122
LKY + R P I +K++S+ GLR Y +LP VL GLGI+IISTS G+M D AR
Sbjct: 73 NLKYTQRRIPSINGVKQISKPGLRIYRPFEKLPLVLNGLGIAIISTSDGVMTDKVARLKK 132
Query: 123 VGGEVLCFV 131
+GGE+L +V
Sbjct: 133 IGGEILAYV 141
>gi|134019|sp|P06362|RR8_MARPO CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|70912|pir||R3LV8 ribosomal protein S8 - liverwort
(Marchantia polymorpha) chloroplast
>gi|11710|emb|CAA28121| (X04465) rps8 [Marchantia
polymorpha]
Length = 132
Score = 93.2 bits (228), Expect = 8e-19
Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 5/130 (3%)
Query: 5 DPIADMLVRINNAASVGK-PNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEI 63
D IA+M+ I NA ++GK V+ P + + IA +L EG+I D + N+K + +
Sbjct: 4 DTIANMITSIRNA-NLGKIKTVQVPATNITRNIAKILFQEGFI-DNFIDNKQNTKDILIL 61
Query: 64 VLKYF--EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARES 121
LKY + + I L+R+S+ GLR Y E+PKVLGG+GI I+STS+GIM D +AR+
Sbjct: 62 NLKYQGKKKKSYITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSRGIMTDREARQK 121
Query: 122 GVGGEVLCFV 131
+GGE+LC+V
Sbjct: 122 KIGGELLCYV 131
>gi|5163218|gb|AAD40597.1|AF115283_16 (AF115283) ribosomal protein
S8 [Leptospira interrogans]
Length = 133
Score = 92.8 bits (227), Expect = 1e-18
Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MSM+DPI DML RI NA P S++K +I ++K EG+I D + ++ + + D
Sbjct: 1 MSMSDPIGDMLTRIRNAGRAKHETCLVPGSKIKKSILDLMKEEGFIKDYESVKVNETFED 60
Query: 61 IEIVLKY-FEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
++ LKY RP+IR L RVS G R Y AE+ +G I+STSKGI+ AR
Sbjct: 61 YKVFLKYDHTKRPIIRELVRVSTPGRRVYIKSAEIRPYKNNIGTLIVSTSKGILTGKNAR 120
Query: 120 ESGVGGEVL 128
+ +GGEV+
Sbjct: 121 KLKLGGEVI 129
>gi|6226112|sp|Q9ZCR9|RS8_RICPR 30S RIBOSOMAL PROTEIN S8
>gi|3861185|emb|CAA15085| (AJ235272) 30S RIBOSOMAL
PROTEIN S8 (rpsH) [Rickettsia prowazekii]
Length = 132
Score = 92.1 bits (225), Expect = 2e-18
Identities = 59/132 (44%), Positives = 74/132 (55%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MSMTD +ADML RI NA NV FP S++K +I VL+ EGYI D Q N+ S
Sbjct: 1 MSMTDNVADMLTRIRNAYKSKLINVSFPSSKIKTSILDVLQKEGYIKDYVTTQ-KNNISY 59
Query: 61 IEIVLKY-FEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
E+ LKY G I + RVS+ G R Y +L +GI I+ST G+M D +A
Sbjct: 60 TEVALKYSVNGEASICEIHRVSKPGKRVYSAIKDLKGYYNNMGIYILSTPYGVMSDREAH 119
Query: 120 ESGVGGEVLCFV 131
VGGEV+C V
Sbjct: 120 IKNVGGEVICKV 131
>gi|1351015|sp|P49399|RS8_STRCO 30S RIBOSOMAL PROTEIN S8
>gi|1076079|pir||S50000 ribosomal protein S8 -
Streptomyces coelicolor (fragment)
Length = 121
Score = 90.1 bits (220), Expect = 7e-18
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 13 RINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKYFEGRP 72
R+ NA S +V P S++K IA +L+ EG+I K + K+ + + LK+ R
Sbjct: 2 RLRNANSAYHDSVTMPASKIKSHIAEILQQEGFITGWKTEDAEVGKN-LTLELKFGPNRE 60
Query: 73 -VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGVGGEVLCFV 131
I +KR+S+ GLR Y LPKVLGGLG++IISTS G++ D +A + GVGGEVL +V
Sbjct: 61 RSIAGIKRISKPGLRVYAKSTNLPKVLGGLGVAIISTSHGLLTDKQAGKKGVGGEVLAYV 120
>gi|6606536|gb|AAF19197.1|AF206521_1 (AF206521) ribosomal protein S8
[Spinacia oleracea]
Length = 134
Score = 90.1 bits (220), Expect = 7e-18
Identities = 52/131 (39%), Positives = 80/131 (60%), Gaps = 5/131 (3%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD++ I NA K VR + + I +L EG+I +A+ Q + +K + +
Sbjct: 4 DTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQ-ERNKYFLVLT 62
Query: 65 LKYFEGR--PVIRI--LKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
L++ + P + LKRVSR GLR Y +P++LGG+GI+I+STS+GIM D +AR
Sbjct: 63 LRHRRNKKGPYLNTFHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARL 122
Query: 121 SGVGGEVLCFV 131
G+GGE+LC++
Sbjct: 123 EGIGGEILCYI 133
>gi|6723785|emb|CAB67195.1| (AJ271079) ribosomal protein S8
[Oenothera elata subsp. hookeri]
Length = 138
Score = 89.7 bits (219), Expect = 9e-18
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 9/135 (6%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD++ I N K VR + + I +L EG+I + + Q +N KS + +
Sbjct: 4 DTIADIITSIRNVDMNRKGTVRIESTNMPKEIVKILLREGFIENVRKHQ-ENKKSFLVLT 62
Query: 65 LKYFEGRP--------VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDS 116
L++ R + LKR+SR GLR Y ++P++LGG+GI I+STS+GIM D
Sbjct: 63 LRHRRNRKGPSPSRTSLNLNLKRISRPGLRVYSNYQKIPRILGGMGIVILSTSRGIMTDR 122
Query: 117 KARESGVGGEVLCFV 131
+AR G+GGE+LC++
Sbjct: 123 EARLEGIGGEILCYI 137
>gi|1351013|sp|P47411|RS8_MYCGE 30S RIBOSOMAL PROTEIN S8
>gi|1361839|pir||C64218 ribosomal protein S8 -
Mycoplasma genitalium (SGC3) >gi|3844759 (U39696)
ribosomal protein S8 (rpS8) [Mycoplasma genitalium]
Length = 141
Score = 89.3 bits (218), Expect = 1e-17
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDN-SKSDIEI 63
DP++D+ +INNA V S++K+AI +L EGY+ + +V++ +K +
Sbjct: 12 DPVSDLFTKINNARKAKLLTVTTIASKLKIAILEILIKEGYLANYQVLENKTKTKKLVSF 71
Query: 64 VLKYFEGRPV-IRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESG 122
LKY + R I +K++S+ GLR Y +LP VL GLGI+IISTS G+M D AR
Sbjct: 72 TLKYTQRRICSINGVKQISKPGLRIYRSFEKLPLVLNGLGIAIISTSDGVMTDKVARLKK 131
Query: 123 VGGEVLCFV 131
+GGE+L +V
Sbjct: 132 IGGEILAYV 140
>gi|134012|sp|P28544|RS8_CHLTR 30S RIBOSOMAL PROTEIN S8
>gi|282143|pir||G42645 ribosomal protein S8 - Chlamydia
trachomatis >gi|144624 (M80325) ribosomal protein CtrS8e
[Chlamydia trachomatis]
Length = 133
Score = 88.2 bits (215), Expect = 3e-17
Identities = 53/133 (39%), Positives = 78/133 (57%), Gaps = 3/133 (2%)
Query: 1 MSMT-DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M MT D IA++L RI NA + S++ AI +LK G+I +++ +N K
Sbjct: 1 MGMTSDSIANLLTRIRNALMAEHLYIDIEHSKMLEAIVRILKQHGFIAHF-LVKEENRKR 59
Query: 60 DIEIVLKYFEGR-PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKA 118
+ + L+Y E R PVI LKRVS+ R Y A++P V G +GI+++ST +G++ S A
Sbjct: 60 LMRVFLRYGEDRRPVIHALKRVSKPSRRVYVSAAKIPYVFGNMGIAVLSTPQGVLEGSVA 119
Query: 119 RESGVGGEVLCFV 131
R VGGE+LC V
Sbjct: 120 RAKNVGGELLCLV 132
>gi|3328952|gb|AAC68116.1| (AE001323) S8 Ribosomal Protein
[Chlamydia trachomatis]
Length = 133
Score = 88.2 bits (215), Expect = 3e-17
Identities = 53/133 (39%), Positives = 78/133 (57%), Gaps = 3/133 (2%)
Query: 1 MSMT-DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M MT D IA++L RI NA V S++ AI +LK G++ +++ +N K
Sbjct: 1 MGMTSDSIANLLTRIRNALMAEHLYVDIEHSKMLEAIVRILKQHGFVAHF-LVKEENRKR 59
Query: 60 DIEIVLKYFEGR-PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKA 118
+ + L+Y E R PVI LKRVS+ R Y A++P V G +GI+++ST +G++ S A
Sbjct: 60 LMRVFLRYGEDRRPVIHALKRVSKPSRRVYVSAAKIPYVFGNMGIAVLSTPQGVLEGSVA 119
Query: 119 RESGVGGEVLCFV 131
R VGGE+LC V
Sbjct: 120 RAKNVGGELLCLV 132
>gi|229581|prf||763059A protein S8 [Escherichia coli]
Length = 109
Score = 87.4 bits (213), Expect = 4e-17
Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 2 SMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDI 61
SM DPIADML RI N + K V P S++K+AIA VLK EG+I D KV +GD +K ++
Sbjct: 1 SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKV-EGD-TKPEL 58
Query: 62 EIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLG 99
E+ LKYF+G+ V I +RVSR GLR Y + + +V+G
Sbjct: 59 ELTLKYFQGKVVAEISQRVSRPGLRIYKLQDKPKRVMG 96
>gi|1173283|sp|P41634|RR8_PINTH CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|1262682|dbj|BAA04399.1| (D17510) ribosomal protein
S8 [Pinus thunbergii]
Length = 132
Score = 86.6 bits (211), Expect = 8e-17
Identities = 51/129 (39%), Positives = 74/129 (56%), Gaps = 3/129 (2%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D I +++ I NA V K VR + + I +L EG+I D + Q + K +
Sbjct: 4 DTITNLITSIRNADMVEKGTVRVTATNITKNIGRILLREGFIEDVREHQ-EGQKYFLIST 62
Query: 65 LKYF--EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESG 122
KY + R + KR S+ GLR Y E+PKVLGG+GI I+STS+GI+ D +AR+
Sbjct: 63 SKYRRRKKRTYMTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKK 122
Query: 123 VGGEVLCFV 131
+GGE+LC+V
Sbjct: 123 IGGEILCYV 131
>gi|6685916|sp|P56801|RR8_ARATH CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|5881729|dbj|BAA84420.1| (AP000423) ribosomal protein
S8 [Arabidopsis thaliana]
Length = 134
Score = 86.2 bits (210), Expect = 1e-16
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD++ I NA K VR + + +I +L EG+I + + + +N++ + +
Sbjct: 4 DTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHR-ENNQYFLILT 62
Query: 65 LKYF----EGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
L++ E I LKR+SR GLR Y +P++LGG+GI I+STS+GIM D +AR
Sbjct: 63 LRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARL 122
Query: 121 SGVGGEVLCFV 131
+GGE+LC++
Sbjct: 123 KRIGGEILCYI 133
>gi|134025|sp|P06363|RR8_TOBAC CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|70913|pir||R3NT8 ribosomal protein S8 - common
tobacco chloroplast >gi|11863|emb|CAA77378| (Z00044)
ribosomal protein S8 [Nicotiana tabacum]
>gi|225232|prf||1211235BP ribosomal protein S8
[Nicotiana tabacum]
Length = 134
Score = 85.0 bits (207), Expect = 2e-16
Identities = 51/131 (38%), Positives = 77/131 (57%), Gaps = 5/131 (3%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IA+++ I NA K VR + + I +L EG+I + + + N K + +
Sbjct: 4 DTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRKHREKN-KYFLVLT 62
Query: 65 LKYFEGR--PVIRIL--KRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
L++ R P IL KR+SR GLR Y +P++LGG+GI I+STS+GIM D +AR
Sbjct: 63 LRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARL 122
Query: 121 SGVGGEVLCFV 131
G+GGE+LC++
Sbjct: 123 EGIGGEILCYI 133
>gi|134022|sp|P12148|RR8_ORYSA CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|70914|pir||R3RZ8 ribosomal protein S8 - rice
chloroplast >gi|12022|emb|CAA33931| (X15901) ribosomal
protein S8 [Oryza sativa] >gi|226643|prf||1603356BT
ribosomal protein S8 [Oryza sativa]
Length = 136
Score = 85.0 bits (207), Expect = 2e-16
Identities = 53/132 (40%), Positives = 74/132 (55%), Gaps = 5/132 (3%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD+L I NA K VR + + I +L EG+I + Q N + +
Sbjct: 4 DTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTL 63
Query: 65 L--KYFEGRPVIR---ILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
K + + R LKR+SR GLR Y +PKVLGG+GI+I+STS+GIM D +AR
Sbjct: 64 RHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREAR 123
Query: 120 ESGVGGEVLCFV 131
+ +GGEVLC++
Sbjct: 124 LNRIGGEVLCYI 135
>gi|4007874 (AF050665) ribosomal protein S8 [Spirogyra maxima]
Length = 132
Score = 85.0 bits (207), Expect = 2e-16
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 3/130 (2%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D I++M+ I NA V + +IA +L EG+I + Q +N + + +
Sbjct: 4 DIISNMITSIRNAILSKTKTVDILATTTTRSIAKILLQEGFIDGLRERQ-ENGRRLLLLT 62
Query: 65 LKYFEGRP--VIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESG 122
L Y + L+R+S+ GLR Y E+PKVLGG+GI I+STSKGIM+D +AR
Sbjct: 63 LHYERKNKSKITTSLRRISKPGLRVYSNHQEIPKVLGGIGIVILSTSKGIMVDREARHKK 122
Query: 123 VGGEVLCFVA 132
+GGE++C+V+
Sbjct: 123 IGGEIICYVS 132
>gi|134018|sp|P08530|RR8_MAIZE CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|70915|pir||R3ZMBC ribosomal protein S8 - maize
chloroplast >gi|12454|emb|CAA29913| (X06734) ribosomal
protein S8 (AA 1-136) [Zea mays]
>gi|902257|emb|CAA60321| (X86563) ribosomal protein S8
[Zea mays]
Length = 136
Score = 84.3 bits (205), Expect = 4e-16
Identities = 54/132 (40%), Positives = 74/132 (55%), Gaps = 5/132 (3%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD+L I NA K VR + + I +L EG+I + Q N + +
Sbjct: 4 DTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTL 63
Query: 65 L----KYFEGRPVIR-ILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
K +G R LKR+SR GLR Y +PKVLGG+GI+I+STS+GIM D +AR
Sbjct: 64 RHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREAR 123
Query: 120 ESGVGGEVLCFV 131
+ +GGEVLC++
Sbjct: 124 LNRIGGEVLCYI 135
>gi|3914925|sp|O51445|RS8_BORBU 30S RIBOSOMAL PROTEIN S8 >gi|2688399
(AE001152) ribosomal protein S8 (rpsH) [Borrelia
burgdorferi]
Length = 132
Score = 82.7 bits (201), Expect = 1e-15
Identities = 46/132 (34%), Positives = 76/132 (56%), Gaps = 2/132 (1%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M++T I DML ++ NA+ VG +V S + +I +LK EGYI D ++ +
Sbjct: 1 MAITYSIGDMLTKLRNASRVGHGSVDLKMSNMNKSILNILKEEGYIKDFNFLE-KKGIAF 59
Query: 61 IEIVLKYFEGR-PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I ++LKY R PVI + +S G + Y +P++ G GI IIS+S+G++ +A+
Sbjct: 60 IRVLLKYDNKRNPVINKIDAISTPGRKIYSSYRNMPRIKNGYGILIISSSQGVITGKEAK 119
Query: 120 ESGVGGEVLCFV 131
+ +GGE++C V
Sbjct: 120 DKKIGGELICSV 131
>gi|134015|sp|P21508|RR8_EUGGR CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|279642|pir||R3EG8 ribosomal protein S8 - Euglena
gracilis chloroplast >gi|14375|emb|CAA77925| (Z11874)
ribosomal protein S8 [Euglena gracilis]
>gi|415764|emb|CAA50108| (X70810) 30S ribosomal protein
S8 [Euglena gracilis]
Length = 140
Score = 81.9 bits (199), Expect = 2e-15
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 8/139 (5%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQG----DN 56
M+ D I+DML RI N+ + V +++ + IA +LK EG+I ++ +N
Sbjct: 1 MTNIDVISDMLTRIRNSLLIKARKVNVINTKLTVNIAEILKKEGFIDSFELADATCLTEN 60
Query: 57 S--KSDIEIVLKYFEGRPVIRI--LKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGI 112
K I I LKY + V I +KRVS+ GLR Y L V GG+G++++STSKG+
Sbjct: 61 GVIKKYITIFLKYKGPKQVSYITKIKRVSKPGLRTYSSYKRLQSVAGGVGLTVLSTSKGL 120
Query: 113 MIDSKARESGVGGEVLCFV 131
M D AR + +GGE+L ++
Sbjct: 121 MTDRLARSNKIGGEILFYI 139
>gi|266980|sp|P30058|RR8_EPIVI CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|336935 (M81884) ribosomal protein S8 [Epifagus
virginiana]
Length = 134
Score = 79.6 bits (193), Expect = 1e-14
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D I +++ I NA K VR + + +L EG+I +A+ + N K +
Sbjct: 4 DTILEIINSIRNADRGRKRVVRITSTNITENFVKILFIEGFIENARKHREKN-KYYFTLT 62
Query: 65 LKYFEG--RPVIRIL--KRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
L++ RP I IL KR+SR GLR Y ++P +LGG+GI I+ TS+GIM D +AR
Sbjct: 63 LRHRRNSKRPYINILNLKRISRPGLRIYSNSQQIPLILGGIGIVILYTSRGIMTDREARL 122
Query: 121 SGVGGEVLCFV 131
G+GGE+LC++
Sbjct: 123 KGIGGELLCYI 133
>gi|4165878 (AF040101) ribosomal protein S8 [Aquifex pyrophilus]
Length = 168
Score = 78.4 bits (190), Expect = 2e-14
Identities = 55/167 (32%), Positives = 78/167 (45%), Gaps = 36/167 (21%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MS DPIADM I NA + P S++K I VLK EG+I D + ++G+ + +
Sbjct: 1 MSAVDPIADMFSAIKNAIMRRDAFLYVPSSKMKERILEVLKREGFIQDWEALKGEKYEEE 60
Query: 61 ---------------------------------IEIVLKYFEG---RPVIRILKRVSRSG 84
++I LKY + R + + RVS+ G
Sbjct: 61 FKKMKELAEKSPNPKMRRYLQQLIDYNKGTQYPLKIYLKYLDPKKRRSALTNIVRVSKGG 120
Query: 85 LRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGVGGEVLCFV 131
R Y G +P V GLGI+I+ST G+M D +AR+ GGEV+ FV
Sbjct: 121 RRVYAGVRTMPYVKRGLGIAIVSTDAGVMTDHEARKLRKGGEVIAFV 167
>gi|6647795|sp|O67566|RS8_AQUAE 30S RIBOSOMAL PROTEIN S8 >gi|2983992
(AE000749) ribosomal protein S08 [Aquifex aeolicus]
Length = 168
Score = 76.9 bits (186), Expect = 7e-14
Identities = 55/167 (32%), Positives = 77/167 (45%), Gaps = 36/167 (21%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
MS DPIADM I NA + P S++K I VLK EG+I D + ++G+ + +
Sbjct: 1 MSAVDPIADMFSAIKNAIMRRDDFLYVPSSKLKERILDVLKKEGFIQDWEALKGEKYEEE 60
Query: 61 ---------------------------------IEIVLKYFEGRP---VIRILKRVSRSG 84
I+I LKY + + I + +VS+ G
Sbjct: 61 YKKMKELAEKSPNPKMKRYLKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGG 120
Query: 85 LRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGVGGEVLCFV 131
R Y G +P V GLGI+I+ST G+M D +AR GGEV+ FV
Sbjct: 121 RRVYAGVRTMPYVKRGLGIAIVSTDAGVMTDHEARRMRKGGEVIAFV 167
>gi|134010|sp|P24353|RR8_ASTLO CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
>gi|70910|pir||R3IT8 ribosomal protein S8 - euglenid
(Astasia longa) plastid >gi|16009|emb|CAA34139| (X16004)
ribosomal protein S8 [Astasia longa]
>gi|414857|emb|CAA53310| (X75651) 30s ribosomal protein
S8 [Astasia longa]
Length = 142
Score = 76.5 bits (185), Expect = 9e-14
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFD-AKVIQGDNSKS 59
M+ D I+D++ RI NA + V ++V + I +LK G+I + + + S
Sbjct: 1 MTTIDTISDVITRIRNANILKLDRVELINTKVAIGICHILKDRGFINSFGEFLNSSDRMS 60
Query: 60 DIEIVLKY------FEGR---PVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSK 110
+ + KY ++G P I+ L+R+S+ G R Y G L K GG+ + ++STSK
Sbjct: 61 NRRFIQKYIIVNLKYKGERRSPCIKELRRISKPGRRVYVGYKNLHKTKGGIELFVLSTSK 120
Query: 111 GIMIDSKARESGVGGEVL 128
G++ D ARE G+GGE+L
Sbjct: 121 GLITDYTAREKGIGGELL 138
>gi|2500419|sp|P56015|RS8_HELPY 30S RIBOSOMAL PROTEIN S8
>gi|2314469|gb|AAD08346.1| (AE000633) ribosomal protein
S8 (rps8) [Helicobacter pylori 26695] >gi|4155835
(AE001547) putative 30S RIBOSOMAL PROTEIN S8
[Helicobacter pylori J99]
Length = 131
Score = 76.1 bits (184), Expect = 1e-13
Identities = 45/130 (34%), Positives = 73/130 (55%), Gaps = 2/130 (1%)
Query: 3 MTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIE 62
+ D IAD L R+ NA+ + ++++ ++I + K +G+I D V D +S +
Sbjct: 2 VNDIIADSLTRLRNASMRRLEFTQLYYAKIVVSILEIFKEKGFIKDFNVKDKDKKQS-VY 60
Query: 63 IVLKYFE-GRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARES 121
+ L Y E G I +KR+S+ G R Y K EL + G G+ ++STSKG++ + +A
Sbjct: 61 VQLAYDEKGHSKISEVKRLSKPGRRVYKQKNELKRFKNGYGVIVVSTSKGVITNEEAYRQ 120
Query: 122 GVGGEVLCFV 131
VGGEVLC +
Sbjct: 121 NVGGEVLCSI 130
>gi|6692660|gb|AAF24803.1|U17009_36 (U17009) ribosomal protein S8
[Phytophthora infestans]
Length = 126
Score = 70.2 bits (169), Expect = 6e-12
Identities = 45/129 (34%), Positives = 72/129 (54%), Gaps = 6/129 (4%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M +TD ++++ +I N K + S+ + I +L EG+I K+ NSK+
Sbjct: 1 MIITDTLSNLFSKIKNGYLAKKSKIIQHKSKQSINILNILVKEGFIKSYKI----NSKNQ 56
Query: 61 IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
++I LKY + + VI +KR+S+ G R Y +L K G IISTS GI+ D +A++
Sbjct: 57 LDIYLKYKKNKAVITGIKRLSKPGKRLYITNKDLYK--KKTGFYIISTSIGILTDLQAKK 114
Query: 121 SGVGGEVLC 129
VGGE++C
Sbjct: 115 LNVGGELIC 123
>gi|1514659|emb|CAA62287.1| (X90765) ribosomal protein S8 [Thermus
aquaticus]
Length = 101
Score = 69.9 bits (168), Expect = 8e-12
Identities = 40/101 (39%), Positives = 60/101 (58%), Gaps = 9/101 (8%)
Query: 39 VLKHEGYIFDAKVIQGDNSKSDIEIVLKYFEGRP--------VIRILKRVSRSGLRKYCG 90
+L EG+I + + D K + + L Y R VI ++R+S+ G R Y G
Sbjct: 1 ILAREGFIKGYERVDVDG-KPYLRVYLNYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVG 59
Query: 91 KAELPKVLGGLGISIISTSKGIMIDSKARESGVGGEVLCFV 131
E+P+V GLGI+I+STSKG++ D +AR+ GVGGE++C V
Sbjct: 60 VKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEV 100
>gi|1491728|emb|CAA67852.1| (X99495) homologous to rice rps8 gene
[Musa acuminata]
Length = 116
Score = 61.7 bits (147), Expect = 2e-09
Identities = 41/106 (38%), Positives = 59/106 (54%), Gaps = 3/106 (2%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD++ I NA K VR + + I +L EG+I + + Q N K +
Sbjct: 4 DTIADIITSIRNADMNKKGTVRIASTNITENIVKILLREGFIENVRKHQEGN-KYFLVST 62
Query: 65 LKYFEGRPVIR--ILKRVSRSGLRKYCGKAELPKVLGGLGISIIST 108
L++ + R I ILKR+SR GLR Y ++PK+LGG+GI I+ST
Sbjct: 63 LRHRKTRKRIHRTILKRISRPGLRIYSDYQQIPKILGGIGIVILST 108
>gi|417732|sp|P26868|RT08_MARPO MITOCHONDRIAL RIBOSOMAL PROTEIN S8
>gi|282812|pir||S25980 ribosomal protein S8 - liverwort
(Marchantia polymorpha) mitochondrion
>gi|250824|bbs|107823 ribosomal protein S8 [Marchantia
polymorpha=liverwort, Peptide Mitochondrial, 152 aa]
>gi|786208 (M68929) rps8 [Marchantia polymorpha]
Length = 152
Score = 59.3 bits (141), Expect = 1e-08
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 11/107 (10%)
Query: 30 SRVKLAIALVLKHEGYIFDAKVIQGDNSKSD--IEIVLKYFE-GRPVIRILKRVSRSGLR 86
SR+ +L +EGYI G + ++D + IVLKY G VI+ +K +S+ G R
Sbjct: 51 SRLCWDFCRILYNEGYI------HGFSQEADGSLRIVLKYHSSGIGVIKKMKTISKPGFR 104
Query: 87 KYCGKAELPKVLGGLGISIISTSKGIMI-DSKARESGV-GGEVLCFV 131
Y K L K GLGI+I+STSKG +I D +A+++ GGE+LC V
Sbjct: 105 IYSSKNRLSKKREGLGITILSTSKGNLICDREAQKTNFGGGEILCQV 151
>gi|6066164|gb|AAF03182.1|AF110138_14 (AF110138) ribosomal protein
S8 [Nephroselmis olivacea]
Length = 125
Score = 53.1 bits (125), Expect = 9e-07
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D + + + N S K +R P ++ + + E YI D I IV
Sbjct: 2 DRLTCLFSALQNGQSAKKTLIRVPCTKNTKKLLNIFLQEKYIQDFY-----EENCQIVIV 56
Query: 65 LKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGVG 124
LKY P+ + ++R+SR G R YC + SI STSKGIM A +G
Sbjct: 57 LKYEGNSPMFQRIQRISRPGRRVYCSYDRISPE----KFSIFSTSKGIMSGRDALNLRIG 112
Query: 125 GEVLCFVA 132
GE +C ++
Sbjct: 113 GEFICEIS 120
>gi|134020|sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8P
>gi|70917|pir||R3MX8 ribosomal protein S8 -
Methanococcus vannielii >gi|44763|emb|CAA34695| (X16720)
rpS8 (AA 1-130) [Methanococcus vannielii]
Length = 130
Score = 51.5 bits (121), Expect = 3e-06
Identities = 39/133 (29%), Positives = 68/133 (50%), Gaps = 6/133 (4%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF--PFSRVKLAIALVLKHEGYIFDAKVIQGDNSK 58
MS+ DP+A+ L ++N VGK NV + P S++ + V++ +GYI + + I+ +
Sbjct: 1 MSLMDPLANALNHVSNCEGVGK-NVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAG 59
Query: 59 SDIEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKA 118
++ ++ V K+ K LP G G+ I+ST KG+M +A
Sbjct: 60 VYKVDLIGQINKCGAVKPRYAVKYQEFEKF-EKRYLPAK--GFGLLIVSTPKGLMTHDEA 116
Query: 119 RESGVGGEVLCFV 131
R +GVGG ++ +V
Sbjct: 117 RTAGVGGRLISYV 129
>gi|1710778|sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P
>gi|2119073|pir||F64358 ribosomal protein S8 -
Methanococcus jannaschii >gi|1591172 (U67497) SSU
ribosomal protein S8P (rpsH) [Methanococcus jannaschii]
Length = 130
Score = 50.8 bits (119), Expect = 5e-06
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQ-GDNSK 58
MS+ DP+A+ L I+N VGK V P S++ + V++ GYI + + I+ G
Sbjct: 1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGI 60
Query: 59 SDIEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKA 118
+E++ K I+ V + G K+ K LP GI I+ST++G+M +A
Sbjct: 61 FKVELIGK-INKCGAIKPRFPVKKFGYEKF-EKRYLPA--RDFGILIVSTTQGVMSHEEA 116
Query: 119 RESGVGGEVLCFV 131
++ G+GG +L +V
Sbjct: 117 KKRGLGGRLLAYV 129
>gi|5457758|emb|CAB49248.1| (AJ248284) SSU ribosomal protein S8P
(rps8E) [Pyrococcus abyssi]
Length = 130
Score = 50.0 bits (117), Expect = 8e-06
Identities = 41/143 (28%), Positives = 72/143 (49%), Gaps = 26/143 (18%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M++ DP+A+ L I N+ VGK V P S++ + V++ GYI + + I D+ ++
Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFI--DDGRA 58
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGLRK-----------YCGKAELPKVLGGLGISIIST 108
+ V ++L +++++G K K LP GI I+ST
Sbjct: 59 GVYRV----------QLLGKINKAGAIKPRFPVKARDYERWEKRFLPAF--EFGILIVST 106
Query: 109 SKGIMIDSKARESGVGGEVLCFV 131
S+G+M +ARE G+GG ++ +V
Sbjct: 107 SQGVMSHKEAREKGIGGRLIAYV 129
>gi|6647792|sp|O59432|RS8_PYRHO 30S RIBOSOMAL PROTEIN S8P
>gi|3258195|dbj|BAA30878.1| (AP000007) 130aa long
hypothetical 30S ribosomal protein S8 [Pyrococcus
horikoshii]
Length = 130
Score = 49.2 bits (115), Expect = 1e-05
Identities = 40/143 (27%), Positives = 72/143 (49%), Gaps = 26/143 (18%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M++ DP+A+ L I N+ VGK + P S++ + V++ GYI + + I D+ ++
Sbjct: 1 MTLLDPLANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFI--DDGRA 58
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGLRK-----------YCGKAELPKVLGGLGISIIST 108
+ V ++L R++++G K K LP GI I+ST
Sbjct: 59 GVYRV----------QLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAF--EFGILIVST 106
Query: 109 SKGIMIDSKARESGVGGEVLCFV 131
S+G+M +AR+ G+GG ++ +V
Sbjct: 107 SQGVMSHKEARDRGIGGRLIAYV 129
>gi|1173308|sp|P46757|RT08_ACACA MITOCHONDRIAL RIBOSOMAL PROTEIN S8
>gi|1078763|pir||S53854 ribosomal protein S8 -
Acanthamoeba castellanii mitochondrion (SGC6) >gi|562058
(U12386) ribosomal protein S8 [Acanthamoeba castellanii]
Length = 127
Score = 48.8 bits (114), Expect = 2e-05
Identities = 33/101 (32%), Positives = 51/101 (49%), Gaps = 6/101 (5%)
Query: 30 SRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKYFEGRPVIRILKRVSRSGLRKYC 89
S++ + + VL GYI + + +I I+LKY +P +R + +S G R Y
Sbjct: 27 SKLCINVLSVLYKLGYIRGFII----KDQKNITILLKYINNKPAVRNIAVISTPGRRTYL 82
Query: 90 GKAELPKVL--GGLGISIISTSKGIMIDSKARESGVGGEVL 128
+L K L G I+STSKGI+ D ++ +GGE L
Sbjct: 83 KHKKLEKFLTKKDSGFLILSTSKGILTDEESNMFKIGGEAL 123
>gi|2258347|gb|AAD11881.1| (AF007261) ribosomal protein S8
[Reclinomonas americana]
Length = 128
Score = 48.4 bits (113), Expect = 2e-05
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD 60
M+ I ++ I +V +S++ I VL EGYI D + ++
Sbjct: 1 MTQIQSIQSLMSNIKQGQKNNLLSVDIIYSKLNFDILNVLYEEGYIRDFEKKTNKKNQDI 60
Query: 61 IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARE 120
I + LKY+ I+ ++RV + ++ L ++ GL I+STSKGI +A+
Sbjct: 61 INVRLKYYNNTSAIKNIQRV----INQHISLKLLNQIDLGLVTYILSTSKGIFSGKEAKR 116
Query: 121 SGVGGEVLCFV 131
+GG VL +
Sbjct: 117 LNLGGTVLLII 127
>gi|3122823|sp|O26126|RS8_METTH 30S RIBOSOMAL PROTEIN S8P
>gi|2621046 (AE000795) ribosomal protein S15a (E.coli
S8) [Methanobacterium thermoautotrophicum]
Length = 133
Score = 46.5 bits (108), Expect = 9e-05
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
+++ DP+A+ L I N G R P S++ + ++ EGYI + + + +
Sbjct: 4 VTLMDPLANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGK 63
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKAR 119
I + VI+ V + K+ K LP GI I+ST +GIM +A+
Sbjct: 64 FIVELEGNINHCGVIKPRHAVKKDEFEKF-EKRYLPAK--NFGIIIVSTPEGIMTHKEAK 120
Query: 120 ESGVGGEVLCFV 131
+ G+GG +L +V
Sbjct: 121 DRGIGGRLLAYV 132
>gi|6322271|ref|NP_012345.1|RPS22A| Ribosomal protein S22A (S24A)
(rp50) (YS22); Rps22ap >gi|133884|sp|P04648|RS22_YEAST
40S RIBOSOMAL PROTEIN S22 (S24) (YS22) (RP50) (YP58)
>gi|70916|pir||R4BY24 ribosomal protein S15a.e.c10 -
yeast (Saccharomyces cerevisiae) >gi|4407|emb|CAA25998|
(X01962) ribosomal protein S24 [Saccharomyces
cerevisiae] >gi|547605|emb|CAA54770| (X77688) ribosomal
protein S24 [Saccharomyces cerevisiae]
>gi|1008400|emb|CAA89485| (Z49465) ORF YJL190c
[Saccharomyces cerevisiae]
Length = 130
Score = 44.9 bits (104), Expect = 3e-04
Identities = 40/141 (28%), Positives = 65/141 (45%), Gaps = 22/141 (15%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M+ + +AD L INNA GK V P S+V + V++ GYI
Sbjct: 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYI------------G 48
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSK 110
+ E + + G+ V+++ R+++ G+ R ++ K L G I++TS
Sbjct: 49 EFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSA 108
Query: 111 GIMIDSKARESGVGGEVLCFV 131
GIM +AR V G++L FV
Sbjct: 109 GIMDHEEARRKHVSGKILGFV 129
>gi|6323399|ref|NP_013471.1|RPS22B| Ribosomal protein S22B (S24B)
(rp50) (YS22); Rps22bp >gi|1071974|pir||S51385 ribosomal
protein S15a.e.c12 - yeast (Saccharomyces cerevisiae)
>gi|609410 (U19103) Rps24bp: 40S ribosomal protein S22
[Saccharomyces cerevisiae]
Length = 130
Score = 44.9 bits (104), Expect = 3e-04
Identities = 40/141 (28%), Positives = 65/141 (45%), Gaps = 22/141 (15%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M+ + +AD L INNA GK V P S+V + V++ GYI
Sbjct: 1 MTRSSVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYI------------G 48
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSK 110
+ E + + G+ V+++ R+++ G+ R ++ K L G I++TS
Sbjct: 49 EFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSA 108
Query: 111 GIMIDSKARESGVGGEVLCFV 131
GIM +AR V G++L FV
Sbjct: 109 GIMDHEEARRKHVSGKILGFV 129
>gi|464711|sp|P33953|RS22_KLUMA 40S RIBOSOMAL PROTEIN S22 (S15A)
(YS24) >gi|320167|pir||S30003 ribosomal protein S15a.e -
yeast (Kluyveromyces marxianus) >gi|263484|bbs|122433
(S53434) S24-1=ribosomal protein [Kluyveromyces
marxianus, Peptide, 130 aa] [Kluyveromyces marxianus]
Length = 130
Score = 44.5 bits (103), Expect = 4e-04
Identities = 40/141 (28%), Positives = 65/141 (45%), Gaps = 22/141 (15%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M+ T +AD L INNA GK V P S+V + V++ GYI
Sbjct: 1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYI------------G 48
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSK 110
+ E + + G+ V+++ R+++ G+ R +++ K L G I++TS
Sbjct: 49 EFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSA 108
Query: 111 GIMIDSKARESGVGGEVLCFV 131
GIM +A V G++L FV
Sbjct: 109 GIMDHEEAHRKHVSGKILGFV 129
>gi|2429452|gb|AAB70989.1| (AF025460) contains similarity to Pfam
domain PF00410 (S8), Score=169.7, E-value=1.9e-51, N=1
[Caenorhabditis elegans]
Length = 130
Score = 44.1 bits (102), Expect = 5e-04
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 7 IADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVL 65
+AD L INNA GK V P S+V + V+ GYI + +++ + + +
Sbjct: 7 LADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 66
Query: 66 KYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGVGG 125
VI + + L KY + G L I++TS GIM +AR +GG
Sbjct: 67 GRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYL---ILTTSAGIMDHEEARRKHLGG 123
Query: 126 EVLCF 130
++L F
Sbjct: 124 KILGF 128
>gi|134016|sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8P (HMAS8)
(HS16) >gi|81010|pir||S16537 ribosomal protein S8 -
Haloarcula marismortui >gi|48863|emb|CAA41286| (X58395)
ribosomal protein [Haloarcula marismortui]
>gi|228186|prf||1718307C ribosomal protein S8
[Haloarcula marismortui]
Length = 130
Score = 43.4 bits (100), Expect = 8e-04
Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 1 MSMTDPIADMLVRINNAASVGK-PNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M+ DP A+ L +NNA SVG P S ++ V GYI D D
Sbjct: 1 MTGNDPFANALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYI-DGFSFVDDGKAG 59
Query: 60 DIEIVLK--YFEGRPVIRILKRVSRSGLRKY--CGKAELPKVLGGLGISIISTSKGIMID 115
+ E+ LK E PV K +G ++ K LP G +++TS GIM
Sbjct: 60 EFEVELKGAINECGPV----KPRYSAGADEFEKWEKRFLPA--RDYGTLVVTTSHGIMSH 113
Query: 116 SKARESGVGGEVLCFV 131
+ARE GVGG+V+ +V
Sbjct: 114 YEAREQGVGGQVIAYV 129
>gi|1173220|sp|P39027|RS1A_HUMAN 40S RIBOSOMAL PROTEIN S15A
>gi|627959|pir||JC2234 ribosomal protein S15a - rat
>gi|495273|emb|CAA54918| (X77953) ribosomal protein S15a
[Rattus norvegicus]
Length = 130
Score = 43.0 bits (99), Expect = 0.001
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 7 IADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVL 65
+AD L INNA GK V P S+V + V+ GYI + EI+
Sbjct: 7 LADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYI------------GEFEIID 54
Query: 66 KYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDS 116
+ G+ V+ + R+++ G+ R +L K L G +++TS GIM
Sbjct: 55 DHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHE 114
Query: 117 KARESGVGGEVLCF 130
+AR GG++L F
Sbjct: 115 EARRKHTGGKILGF 128
>gi|3169080|emb|CAA19274.1| (AL023705) hypothetical protein
[Schizosaccharomyces pombe]
Length = 152
Score = 43.0 bits (99), Expect = 0.001
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 14 INNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSD------------- 60
+ N+ K P L + VL H+G++ + + +GD D
Sbjct: 10 LQNSFRARKSLASVPNCNSVLELCAVLYHQGFL--SSIQRGDIHGPDALPTITTRQNVAT 67
Query: 61 --IEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGIS-----------IIS 107
+ + LKYFEG+PV+ ++ VS+ + +EL + G +S I+
Sbjct: 68 RRLWLGLKYFEGKPVLHYIRAVSKPSRKVNLTPSELLQFAKGRKVSFVNGLEPAEVGIVE 127
Query: 108 TSKGIMIDSKARESGVGGEVLCFV 131
T GIM A ++ +GG V+C V
Sbjct: 128 TKHGIMSIDDAIKNNLGGNVICRV 151
>gi|3758866|emb|CAB11151.1| (Z98551) predicted using hexExon;
MAL3P6.30 (PFC0735w), 40S Ribosomal protein S15A, len:
131 aa; Similarity to 40S ribosomal protein S15A.
H.sapiens 40S ribosomal protein S15A (SW:RS1A_HUMAN)
BLAST Score: 505, sum P(1) = 1.3e...
Length = 130
Score = 42.2 bits (97), Expect = 0.002
Identities = 39/134 (29%), Positives = 63/134 (46%), Gaps = 22/134 (16%)
Query: 7 IADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVL 65
+AD L INNA G+ V P S+V + ++ +GYI EIV
Sbjct: 7 LADCLKTINNAEKRGRRQVLIRPSSKVVIKFLQYMQKKGYI------------GSFEIVD 54
Query: 66 KYFEGRPVIRILKRVSRSGL--RKYCGKA-ELPKVLGGL------GISIISTSKGIMIDS 116
+ G+ V+ +L R+++ + +Y K E+ K++ + G I++T GIM
Sbjct: 55 DHRSGKIVVNLLGRINKCAVISPRYDVKLDEIEKIITSILPSRLFGHLILTTPYGIMDHE 114
Query: 117 KARESGVGGEVLCF 130
+AR GG+VL F
Sbjct: 115 EARRKHTGGKVLGF 128
>gi|1350954|sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A
>gi|422493|pir||S33498 ribosomal protein DS15a - fruit
fly (Drosophila melanogaster) >gi|311606|emb|CAA79771|
(Z21673) ribosomal protein 15a (40S subunit) [Drosophila
melanogaster]
Length = 130
Score = 41.8 bits (96), Expect = 0.002
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 7 IADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVL 65
+AD L INNA GK V P S+V + V+ GYI + EIV
Sbjct: 7 LADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYI------------GEFEIVD 54
Query: 66 KYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDS 116
+ G+ V+ + R+++ G+ R ++ K L G +++TS GIM
Sbjct: 55 DHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHE 114
Query: 117 KARESGVGGEVLCF 130
+AR +GG++L F
Sbjct: 115 EARRKHLGGKILGF 128
>gi|4506689|ref|NP_001010.1|| ribosomal protein S15a
>gi|1082767|pir||S52339 ribosomal protein S15a - human
>gi|666047|emb|CAA59127| (X84407) ribosomal protein S15a
[Homo sapiens]
Length = 130
Score = 41.8 bits (96), Expect = 0.002
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 7 IADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVL 65
+AD L INNA GK V P S+V + ++ GYI + EI+
Sbjct: 7 LADALKSINNAEKRGKRQVLIRPCSKVIVRFLTLMMKHGYI------------GEFEIID 54
Query: 66 KYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDS 116
+ G+ V+ + R+++ G+ R +L K L G +++TS GIM
Sbjct: 55 DHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHE 114
Query: 117 KARESGVGGEVLCF 130
+AR GG++L F
Sbjct: 115 EARRKHTGGKILGF 128
>gi|1173217|sp|P46792|RS22_AGABI 40S RIBOSOMAL PROTEIN S22 (S15A)
>gi|895693|emb|CAA55942| (X79405) ribosomal protein S15a
[Agaricus bisporus] >gi|1580937|prf||2116270A ribosomal
protein S15a [Agaricus bisporus]
Length = 130
Score = 41.4 bits (95), Expect = 0.003
Identities = 34/133 (25%), Positives = 64/133 (47%), Gaps = 22/133 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D L I NA+ GK V P S+V + V++ GYI + EI+ +
Sbjct: 9 DCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYI------------GEFEIIDDH 56
Query: 68 FEGRPVIRILKRVSRSGLRKYCGKAELPKV---------LGGLGISIISTSKGIMIDSKA 118
G+ ++++ R++++G+ + ++ G+GI +++TS GI+ +A
Sbjct: 57 RGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEA 116
Query: 119 RESGVGGEVLCFV 131
R VGG++L +V
Sbjct: 117 RRKNVGGKLLGYV 129
>gi|6015773|emb|CAB57600.1| (Y18930) ribosomal protein S8 (HMAS8)
[Sulfolobus solfataricus]
Length = 133
Score = 41.4 bits (95), Expect = 0.003
Identities = 37/151 (24%), Positives = 64/151 (41%), Gaps = 39/151 (25%)
Query: 1 MSMTDPIADMLVRI-NNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M +P+A+ L I NN K + P S++ + + V++ EGY+ + + I
Sbjct: 1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRW-- 58
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSG-------------------LRKYCGKAELPKVLGG 100
G+ +++L RV++ G +R+Y E+
Sbjct: 59 ----------GKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEI------ 102
Query: 101 LGISIISTSKGIMIDSKARESGVGGEVLCFV 131
GI I+STSKG+M +A +GG L +V
Sbjct: 103 -GIIIVSTSKGVMSHKEAARLRIGGVALGYV 132
>gi|6683481|dbj|BAA89231.1| (AB018560) wrp15a [Citrullus lanatus]
Length = 130
Score = 41.4 bits (95), Expect = 0.003
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D L + NA GK V P S+V + LV++ GYI + E V +
Sbjct: 9 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYI------------GEFEFVDDH 56
Query: 68 FEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDSKA 118
G+ V+ + R+++ G+ R G E+ L G +++TS GIM +A
Sbjct: 57 RSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEA 116
Query: 119 RESGVGGEVLCF 130
R VGG+VL F
Sbjct: 117 RRKNVGGKVLGF 128
>gi|3355488|gb|AAC27850.1| (AC004218) 40S ribosomal protein S15A
[Arabidopsis thaliana]
Length = 136
Score = 41.0 bits (94), Expect = 0.004
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D L ++NA GK V P S+V + V++ GYI ++ E V +
Sbjct: 15 DCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYI------------AEFEYVDDH 62
Query: 68 FEGRPVIRILKRVSRSGL---RKYCGKAELP----KVLGG--LGISIISTSKGIMIDSKA 118
G+ V+ + R++ G+ R G E+ K+L G +++TS GIM +A
Sbjct: 63 RSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEA 122
Query: 119 RESGVGGEVLCF 130
R+ VGG+VL F
Sbjct: 123 RKKNVGGKVLGF 134
>gi|2811038|sp|O05636|RS8_SULAC 30S RIBOSOMAL PROTEIN S8P
>gi|2052261|emb|CAA69092.1| (Y07778) ribosomal protein
S8 [Sulfolobus acidocaldarius]
Length = 133
Score = 40.2 bits (92), Expect = 0.007
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1 MSMTDPIADMLVRI-NNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M +P+A+ L + NN K + P S++ +++ V++ EGYI + + I +
Sbjct: 1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRA-- 58
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGLRK------YCGKAELPKVLGG------LGISIIS 107
G+ ++++L R+++ G Y G LP + +GI IIS
Sbjct: 59 ----------GKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIIS 108
Query: 108 TSKGIMIDSKARESGVGGEVLCFV 131
T KG+M +GG L +V
Sbjct: 109 TPKGVMSHRDGIREKIGGVTLGYV 132
>gi|6685937|sp|Q9YF89|RS8_AERPE 30S RIBOSOMAL PROTEIN S8P
>gi|5103991|dbj|BAA79307.1| (AP000059) 135aa long
hypothetical 30S ribosomal protein S8 [Aeropyrum pernix]
Length = 135
Score = 40.2 bits (92), Expect = 0.007
Identities = 37/144 (25%), Positives = 67/144 (45%), Gaps = 25/144 (17%)
Query: 1 MSMTDPIADMLVRINNAASVGKPN-VRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKS 59
M M D +A+ + I NA GK + P S++ + +L+ EGYI + I
Sbjct: 3 MVMLDTLANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRW-- 60
Query: 60 DIEIVLKYFEGRPVIRILKRVSRSGLRK------YCGKAELPKVLG------GLGISIIS 107
G+ +++L R++ G+ K Y A++P+ L +G+ I+S
Sbjct: 61 ----------GKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILS 110
Query: 108 TSKGIMIDSKARESGVGGEVLCFV 131
T +G+M +A + +GG V+ +V
Sbjct: 111 TPQGVMTHREALKRKIGGIVIAYV 134
>gi|1173218|sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A
>gi|440824 (L27461) ribosomal protein S15 [Arabidopsis
thaliana] >gi|2150130 (AF001412) cytoplasmic ribosomal
protein S15a [Arabidopsis thaliana]
Length = 130
Score = 39.9 bits (91), Expect = 0.009
Identities = 38/132 (28%), Positives = 59/132 (43%), Gaps = 22/132 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D L + NA GK V P S+V + +V++ GYI + E V +
Sbjct: 9 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYI------------GEFEYVDDH 56
Query: 68 FEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDSKA 118
G+ V+ + R+++ G+ R G E+ L G +++TS GIM +A
Sbjct: 57 RSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116
Query: 119 RESGVGGEVLCF 130
R VGG+VL F
Sbjct: 117 RRKNVGGKVLGF 128
>gi|6094170|sp|O14469|RS22_SCHPO 40S RIBOSOMAL PROTEIN S22
>gi|2281972|emb|CAB10850.1| (Z98056) 40s ribosomal
protein s15 or s22 [Schizosaccharomyces pombe]
>gi|2414597|emb|CAB16574| (Z99295) 40s ribosomal protein
s15a [Schizosaccharomyces pombe]
>gi|3219307|dbj|BAA28848| (AB015353) ribosomal protein
S22 homolog [Schizosaccharomyces pombe]
Length = 130
Score = 39.9 bits (91), Expect = 0.009
Identities = 37/134 (27%), Positives = 63/134 (46%), Gaps = 22/134 (16%)
Query: 7 IADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVL 65
+AD L I NA G+ V P S+V + V++ GYI + I S
Sbjct: 7 LADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRS-------- 58
Query: 66 KYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDS 116
G+ VI++ R+++ G+ R ++ K + L G+ +++TS+GIM +
Sbjct: 59 ----GKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHN 114
Query: 117 KARESGVGGEVLCF 130
+AR GG++L F
Sbjct: 115 EARAKDAGGKILGF 128
>gi|133793|sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB8)
>gi|99825|pir||S20945 ribosomal protein S15a - rape
>gi|17863|emb|CAA42599| (X59983) r-protein BnS15a
[Brassica napus]
Length = 130
Score = 39.5 bits (90), Expect = 0.012
Identities = 38/132 (28%), Positives = 59/132 (43%), Gaps = 22/132 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D L + NA GK V P S+V + +V++ GYI + E V +
Sbjct: 9 DALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYI------------GEFEYVDDH 56
Query: 68 FEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDSKA 118
G+ V+ + R+++ G+ R G E+ L G +++TS GIM +A
Sbjct: 57 RSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116
Query: 119 RESGVGGEVLCF 130
R VGG+VL F
Sbjct: 117 RRKNVGGKVLGF 128
>gi|5931793|emb|CAB56626.1| (AJ249788) ribosomal protein 22 of the
small subunit [Xanthophyllomyces dendrorhous]
Length = 130
Score = 39.5 bits (90), Expect = 0.012
Identities = 37/133 (27%), Positives = 60/133 (44%), Gaps = 22/133 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D L I NA GK V P S+V + V++ GYI EIV +
Sbjct: 9 DCLNNIVNAERRGKRQVLIRPSSKVVVRFLSVMQQHGYI------------GAFEIVDDH 56
Query: 68 FEGRPVIRILKRVSRSGLRKYCGKAELPKVLG---------GLGISIISTSKGIMIDSKA 118
G+ VI + R++++G+ ++ ++ G+ I++TS GIM +A
Sbjct: 57 RAGKIVIELNGRLNKTGVISPRFNVQVDEIESWVNLLLPARSFGLIILTTSAGIMDHEEA 116
Query: 119 RESGVGGEVLCFV 131
R VGG++L +V
Sbjct: 117 RRKHVGGKLLGYV 129
>gi|2130985|emb|CAA42600| (X59984) r-protein BnS15a [Brassica napus]
Length = 130
Score = 38.7 bits (88), Expect = 0.020
Identities = 38/132 (28%), Positives = 59/132 (43%), Gaps = 22/132 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D + + NA GK V P S+V + +V++ GYI + E V +
Sbjct: 9 DAVKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYI------------GEFEYVDDH 56
Query: 68 FEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDSKA 118
G+ V+ R+++SG+ R G E+ L G +++TS GIM +A
Sbjct: 57 RSGKIVVESNGRLNKSGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116
Query: 119 RESGVGGEVLCF 130
R VGG+VL F
Sbjct: 117 RRKNVGGKVLGF 128
>gi|3914919|sp|O28369|RS8_ARCFU 30S RIBOSOMAL PROTEIN S8P
>gi|2648631 (AE000971) SSU ribosomal protein S8P (rps8E)
[Archaeoglobus fulgidus]
Length = 131
Score = 38.3 bits (87), Expect = 0.027
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 5 DPIADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEI 63
D +++ ++ I NA VG+ P S++ + V+K GYI + ++ I
Sbjct: 6 DTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVE 65
Query: 64 VLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGISIISTSKGIMIDSKARESGV 123
+ IR S + Y K LP GI I+ST+KG+M AR+ +
Sbjct: 66 LSGNINDCGAIRPRFSSSVTEYEMY-EKRYLPA--RDFGILIVSTTKGVMSQKDARKQRL 122
Query: 124 GGEVLCFV 131
GG +L +V
Sbjct: 123 GGVLLAYV 130
>gi|107615|pir||S22051 ribosomal protein S15a.e - human
>gi|36142|emb|CAA44568| (X62691) ribosomal protein
homologous to yeast S24 [Homo sapiens]
Length = 129
Score = 37.5 bits (85), Expect = 0.046
Identities = 35/133 (26%), Positives = 56/133 (41%), Gaps = 21/133 (15%)
Query: 7 IADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLK 66
+AD L INNA GK + + V+ GYI + EI+
Sbjct: 7 LADALKSINNAEKRGKRRCLLGRLQSHRPVLTVMMKHGYI------------GEFEIIDD 54
Query: 67 YFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDSK 117
+ G+ V+ + R+++ G+ R +L K L G +++TS GIM +
Sbjct: 55 HRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEE 114
Query: 118 ARESGVGGEVLCF 130
AR GG++L F
Sbjct: 115 ARRKHTGGKILGF 127
>gi|417715|sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24)
>gi|283751|pir||A43907 ribosomal protein S15a.e - sea
urchin (Strongylocentrotus purpuratus)
>gi|241027|bbs|72598 (S72597) SpS24=ribosomal protein
S24 [Strongylocentrotus purpuratus=sea urchins, Peptide,
130 aa] [Strongylocentrotus purpuratus]
Length = 130
Score = 37.1 bits (84), Expect = 0.060
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 7 IADMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVL 65
+AD L I NA K V P S+V + +V+ GYI + EIV
Sbjct: 7 LADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYI------------GEFEIVD 54
Query: 66 KYFEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDS 116
+ G+ ++ + R+++ G+ R E+ K L G +++TS GIM
Sbjct: 55 DHRGGKIIVNLNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHE 114
Query: 117 KARESGVGGEVLCF 130
+AR VGG++L F
Sbjct: 115 EARRKHVGGKILGF 128
>gi|6323808|ref|NP_013879.1|YMR158W| Ymr158wp
>gi|2497166|sp|Q03799|YM33_YEAST HYPOTHETICAL 17.5 KD
PROTEIN IN IMP1-HLJ1 INTERGENIC REGION
>gi|1078566|pir||S54516 hypothetical protein YMR158w -
yeast (Saccharomyces cerevisiae)
>gi|825563|emb|CAA89794| (Z49705) unknown [Saccharomyces
cerevisiae]
Length = 155
Score = 35.6 bits (80), Expect = 0.18
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 7 IADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIF------------DAKVIQG 54
+A+ + N + V P+++++L A L +G++ D +
Sbjct: 6 LANTCAHLQNCSKVRVALTSIPYTKLQLQFAYNLYQQGFLSSLQKGSTMGPDKDFVEVTP 65
Query: 55 DN-SKSDIEIVLKYFEGRPVIRILKRVSRSGLRKYCGKAELPKVLGGLGIS--------- 104
DN S + + LKY + +PV+ K +S+ R + ++ K+ G+ I
Sbjct: 66 DNISTRRLWVGLKYRDNKPVLSSCKLISKPNSRIHLPMEDMKKLCSGVTIRNIKPLQPGE 125
Query: 105 --IISTSKGIMIDSKARESGVGGEVLCFV 131
++ IM ++A + GEVLC V
Sbjct: 126 LILVRAHNNIMDINEAISKKLDGEVLCRV 154
>gi|1071975|pir||S05996 ribosomal protein S8 - Bacillus subtilis
(fragment)
Length = 31
Score = 32.8 bits (73), Expect = 1.2
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 1 MSMTDPIADMLVRINNAASVGKPNVRFP 28
M MTDPIADML RI NA V + P
Sbjct: 1 MVMTDPIADMLTRIRNANMVRHEKLEIP 28
>gi|2119072|pir||JC4713 ribosomal protein S24 - sea urchin
(Paracentrotus lividus)
Length = 130
Score = 32.8 bits (73), Expect = 1.2
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 28 PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKYFEGRPVIRILKRVSRSGL-- 85
P S+V + +V+ GYI + E+V + G+ ++ + R+++ G+
Sbjct: 29 PCSKVTIKFLMVMMKHGYI------------GEFEVVDDHRGGKIIVNLNGRLNKCGVIS 76
Query: 86 -RKYCGKAELPKVLGGL------GISIISTSKGIMIDSKARESGVGGEVLCF 130
R ++ K L G +++TS GIM +AR VGG++L F
Sbjct: 77 PRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGF 128
>gi|1710747|sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24)
>gi|1166457|emb|CAA64564| (X95268) ribosomal protein S24
[Paracentrotus lividus]
Length = 130
Score = 32.1 bits (71), Expect = 2.0
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 28 PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKYFEGRPVIRILKRVSRSGL-- 85
P S+V + +V+ GYI + E+V + G+ ++ + R+++ G+
Sbjct: 29 PCSKVTIKFLMVMIKHGYI------------GEFEVVDDHRGGKIIVNLNGRLNKCGVIS 76
Query: 86 -RKYCGKAELPKVLGGL------GISIISTSKGIMIDSKARESGVGGEVLCF 130
R ++ K L G +++TS GIM +AR VGG++L F
Sbjct: 77 PRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGF 128
>gi|1173219|sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24)
>gi|881426 (U27539) 40S ribosomal protein S24
[Dictyostelium discoideum]
Length = 130
Score = 31.3 bits (69), Expect = 3.5
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 9 DMLVRINNAASVGKPNVRF-PFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIVLKY 67
D L I NA GK V P S+V + V+ + YI + EIV +
Sbjct: 9 DCLYSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYI------------GEFEIVDDH 56
Query: 68 FEGRPVIRILKRVSRSGL---RKYCGKAELPKVLGGL------GISIISTSKGIMIDSKA 118
G+ VI ++ R+++ G+ R E+ K L G +++TS GIM ++A
Sbjct: 57 RSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEA 116
Query: 119 RESGVGGEVLCF 130
+ GG++L F
Sbjct: 117 KTRHTGGKLLGF 128
>gi|134023|sp|P09597|RR8_SPIOL CHLOROPLAST 30S RIBOSOMAL PROTEIN
S8 >gi|81527|pir||S01981 ribosomal protein S8 - spinach
chloroplast (fragment) >gi|12313|emb|CAA31718| (X13336)
ribosomal protein S8 [Spinacia oleracea]
Length = 84
Score = 30.9 bits (68), Expect = 4.5
Identities = 26/82 (31%), Positives = 42/82 (50%), Gaps = 5/82 (6%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD++ I NA K VR + + I +L EG+I +A+ Q + +K + +
Sbjct: 4 DTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQ-ERNKYFLVLT 62
Query: 65 LKYFEGR--PVIRI--LKRVSR 82
L++ + P + LKRVSR
Sbjct: 63 LRHRRNKKGPYLNTFHLKRVSR 84
>gi|1173282|sp|P42343|RR8_OENAM CHLOROPLAST 30S RIBOSOMAL PROTEIN
S8
Length = 74
Score = 30.9 bits (68), Expect = 4.5
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 1/67 (1%)
Query: 5 DPIADMLVRINNAASVGKPNVRFPFSRVKLAIALVLKHEGYIFDAKVIQGDNSKSDIEIV 64
D IAD++ I N K VR + + I +L EG+I + + Q +N KS + +
Sbjct: 4 DTIADIITSIRNVDMNRKGTVRIESTNMAEKIVKILLREGFIENVRKHQ-ENKKSFLVLT 62
Query: 65 LKYFEGR 71
L++ R
Sbjct: 63 LRHRRNR 69
>gi|40154|emb|CAA33705| (X15664) S8 protein (AA 1-23) [Bacillus
subtilis]
Length = 23
Score = 30.1 bits (66), Expect = 7.8
Identities = 14/18 (77%), Positives = 14/18 (77%)
Query: 3 MTDPIADMLVRINNAASV 20
MTDPIADML RI NA V
Sbjct: 1 MTDPIADMLTRIRNANMV 18
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.322 0.141 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31621232
Number of Sequences: 449381
Number of extensions: 1138811
Number of successful extensions: 2474
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2324
Number of HSP's gapped (non-prelim): 103
length of query: 132
length of database: 138,416,789
effective HSP length: 53
effective length of query: 79
effective length of database: 114,599,596
effective search space: 9053368084
effective search space used: 9053368084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 66 (30.1 bits)