BLASTP 2.0.10 [Aug-26-1999]
Query= XF-0.3-GL3306
(819 letters)
Database: nr
449,381 sequences; 138,416,789 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|6599326|emb|CAB63672.1| (AJ251789) hypothetical protein [Lac... 258 1e-67
gi|4126648|dbj|BAA36668.1| (AB016282) ORF11 [bacteriophage phi-... 254 2e-66
gi|2117255|emb|CAB09087.1| (Z95586) hypothetical protein Rv1582... 232 8e-60
gi|5730280|emb|CAB52501.1| (AJ131519) putative DNA-polymerase o... 229 7e-59
gi|4336104|gb|AAD17635| (AF068845) gp70; similar to fc31 gp9a [... 225 1e-57
gi|3947483|emb|CAA07134.1| (AJ006589) gp9a [Bacteriophage phi-C31] 213 3e-54
gi|6466120|gb|AAF12794.1|AF195093_1 (AF195093) putative DNA-pri... 172 9e-42
gi|3192005|emb|CAA19404| (AL023797) putative ATP binding protei... 153 7e-36
gi|481605|pir||S38922 hypothetical protein 10 - phage phi-C31 >... 120 4e-26
gi|481604|pir||S38921 hypothetical protein 9 - phage phi-C31 >g... 98 2e-19
gi|2738452 (AF003534) hypothetical protein 103R [Chilo iridesce... 67 5e-10
gi|1345114 (U36383) ORF904; Method: conceptual translation sup... 52 2e-05
gi|780441 (U18466) pC962R [African swine fever virus] >gi|10974... 47 5e-04
gi|4530172|gb|AAD21912.1| (AF085222) putative primase [Streptoc... 45 0.003
gi|1930088 (U93082) helicase-like protein; ORF980 [Sulfolobus i... 45 0.003
gi|2352442 (AF004379) orf382 [Streptococcus thermophilus bacter... 43 0.008
gi|2444093 (U88974) ORF13 [Streptococcus thermophilus temperate... 43 0.008
gi|4049997 (AF077306) putative primase; gp506 [Streptococcus th... 43 0.008
gi|6739647|gb|AAF27348.1|AF198256_2 (AF198256) phage phi-R73 pr... 43 0.010
gi|5420103|emb|CAB46558.1| (AJ242479) putative DNA primase [Str... 41 0.029
gi|93819|pir||C41830 DNA primase - phage phi-R73 41 0.039
gi|130905|sp|P10277|PRIM_BPP4 PUTATIVE P4-SPECIFIC DNA PRIMASE ... 41 0.051
gi|6681622|dbj|BAA88797.1| (AB015885) similar to vaccinia D5R [... 39 0.11
gi|3059074|emb|CAA12526.1| (AJ225333) primase [Acidianus ambiva... 38 0.26
gi|6578610|gb|AAF17964.1|AF170722_82 (AF170722) gp080R [Rabbit ... 37 0.75
gi|1055056 (U39850) coded for by C. elegans cDNA yk34g10.5; cod... 36 1.7
gi|134807|sp|P16936|SPEB_ECOLI AGMATINASE (AGMATINE UREOHYDROLA... 35 2.2
gi|320288|pir||G41700 C5 protein - rabbit fibroma virus 34 5.0
gi|1228093|emb|CAA87011| (Z46913) polyketide synthase [Streptom... 34 5.0
gi|5689405|dbj|BAA82986.1| (AB028957) KIAA1034 protein [Homo sa... 33 8.5
>gi|6599326|emb|CAB63672.1| (AJ251789) hypothetical protein
[Lactobacillus casei bacteriophage A2]
Length = 770
Score = 258 bits (652), Expect = 1e-67
Identities = 159/458 (34%), Positives = 238/458 (51%), Gaps = 44/458 (9%)
Query: 344 DMANAVRIAKHYGKRLMVS--GDRWFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQWRT 401
D NA R H+G S W+V+ G++W D KL ++ V+ +
Sbjct: 324 DTGNAQRFVDHFGDAARYSYVDKAWYVYNGSYWELDKQG------KLGSMVDIVVDDMKR 377
Query: 402 KRA------DTEKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCMIAVKPKQLDTDP 455
++ D E+ K K +K K+S S +AM + +AV P++ D D
Sbjct: 378 EKIVIADGMDPEEAKKKWSKFL-------KQSRSNSAKKAMTEQLRHRLAVMPEEFDRDK 430
Query: 456 WLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEEGQAQQP 515
LLN NG VDL G L H + ++ V YT +P +R+ L++I + +
Sbjct: 431 ILLNTINGYVDLSDGELHDHDVKKMFSKETGVEYTDTVDSPEWRQFLDQIFDHD----EE 486
Query: 516 LSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYA-GVAAPGLLMDA 574
L D+LQ+ GY TGS E + ++YG GRNGKS +D + + G YA ++A +++
Sbjct: 487 LIDYLQKAIGYSLTGSTEEQVMFILYGNGRNGKSVFMDTLKHVAGSYAKSMSAKSIMIKQ 546
Query: 575 GHDRHPTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHK 634
++IA L G R+VT +E +EG L EG VK+ TGGDM+ AR++ F+++P K
Sbjct: 547 SDSAANSDIARLKGARLVTASEPNEGVRLDEGLVKELTGGDMVTARFLYGSEFEYKPEFK 606
Query: 635 LQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREG 694
L L TNHKP+I+G D GIW RLMLIPF + I + +D ++ KL E G
Sbjct: 607 LWLATNHKPIIRGTDDGIWRRLMLIPFNVQ----------IPENKVDKRLAYKLERESVG 656
Query: 695 VLAWLVAGAVEWYREGLNPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMG 754
+L W V GA++W REGL P V+ ASK Y+ E D + F+ D C L +++ AP
Sbjct: 657 ILNWAVDGALKWQREGLKAPASVQAASKSYRAEMDTLELFVRDCCDLRPDYQ----AP-A 711
Query: 755 GGLYPAYTQWCKDSGVYALSKVRFLGELERCVPKFRKK 792
G L+ AY W + +G Y + K +F E+++ KF K
Sbjct: 712 GELFKAYQSWAESNGEYKMRKQKFGAEMKQ---KFMSK 746
>gi|4126648|dbj|BAA36668.1| (AB016282) ORF11 [bacteriophage phi-105]
Length = 806
Score = 254 bits (643), Expect = 2e-66
Identities = 156/488 (31%), Positives = 240/488 (48%), Gaps = 37/488 (7%)
Query: 312 EEMLAMFEDLTDAPATLAVERH----DVPEALYLTTDMANAVRIAKHYGKRLMVSGD-RW 366
E+ +E P T VE D P +LT ++ NA RI ++GK + + W
Sbjct: 296 EQQEKPYEVYFSQPPTAQVEDTEEIIDTPPTFHLT-ELGNAERIVYYHGKNIRYCNELEW 354
Query: 367 FVWEGTHWAHDTDAA-RLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGK 425
+W G W D+ + + + I GE + D +EK N W K
Sbjct: 355 LIWNGKMWQEDSKRKIEAITAQTLRAIYGEAQATE----DGYREKQLND--------WAK 402
Query: 426 RSEMRSTVEAMMALAKCMIAVKPKQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVV 485
+ E R+ + A+ M++V+ ++LD+ +L NC NG +DL+TG L H + T++
Sbjct: 403 KCERRNIRMNTILDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKIS 462
Query: 486 PVNYTPDAAAPVFRKTLERITC-EEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMG 544
PV Y DA P ++ +E I EEG + +FLQ+ GY TG E + ++G G
Sbjct: 463 PVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGNG 522
Query: 545 RNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRH-PTEIADLVGRRMVTVNETSEGGLL 603
RNGKST ++ + +LG Y + +D +IA L G R V+ E+ EG L
Sbjct: 523 RNGKSTFINTVQQLLGDYGRQTNSDTFIKKKNDSSINNDIARLDGARFVSAVESEEGQQL 582
Query: 604 REGFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKA 663
E VKQ TGG+ + AR++R ++F+F P K+ TNHKP++KG D GIW R+ L+PF
Sbjct: 583 SESLVKQITGGEKMSARFLRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTV 642
Query: 664 RFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLNPPEIVRDASKD 723
I + +D ++ +KLAAE G+L W V G + W +EGL PE +R A++
Sbjct: 643 T----------IPKEKVDKQLPQKLAAEMPGILRWAVEGCLMWQKEGLTEPEDIRKATEG 692
Query: 724 YQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYALSKVRFLGELE 783
Y+ + D + ++ + C+L T LY Y WC ++ L F +LE
Sbjct: 693 YREDMDILGPYMEERCIL-----HPTTKVEAKELYKDYKDWCFENDEIELKNRAFYRQLE 747
Query: 784 -RCVPKFR 790
R K+R
Sbjct: 748 IRGFKKYR 755
>gi|2117255|emb|CAB09087.1| (Z95586) hypothetical protein Rv1582c
[Mycobacterium tuberculosis]
Length = 471
Score = 232 bits (586), Expect = 8e-60
Identities = 157/474 (33%), Positives = 235/474 (49%), Gaps = 50/474 (10%)
Query: 348 AVRIAKHYGKRLM-VSGDRWFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQWRTKRADT 406
A R+A+ Y +L+ V+G W W+G WA D + R + + R +D+
Sbjct: 41 AYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRG---------EAKRAVLAELRQALSDS 91
Query: 407 EKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCMI--AVKPKQLDTDPWLLNCANGT 464
+K A + ++ E S V ++ LA ++ A LD+DP LLN ANGT
Sbjct: 92 LNDKELRADV--------RKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGT 143
Query: 465 VDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEEGQAQQPLSDFLQRWF 524
+DL T L+ H P D +T++ Y D +P+++ L R+ +EG + F+QR
Sbjct: 144 LDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEG-----VRGFVQRLA 198
Query: 525 GYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIA 584
G G+VREH LA++ G+G NGKS I LG YA A P L M + HPT
Sbjct: 199 GVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHR-ENAHPTGEM 257
Query: 585 DLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPV 644
DL G R V V+E+ + L E +K+ TGGD ++AR MR DF +F P+H L+TNH P
Sbjct: 258 DLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPR 317
Query: 645 IKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAV 704
+ G D IW R+ ++PF+ E+ D ++ +L E + +L+W VAG
Sbjct: 318 VPGDDTAIWRRIRVVPFEVVIPADEQ----------DRELDARLQLEADSILSWAVAGWS 367
Query: 705 EWYREGLNPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQW 764
++ R GL+ P+ V A+ +Y+ + D + +FI DECV + T L+ A+ +W
Sbjct: 368 DYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTT----HLFEAWQRW 423
Query: 765 CKDSGVYALSKVRFLGELERCVPKFRKKHVYETPEGGKRRMFLVIQGIALTGAD 818
GV +S+ F L+ H Y P K R GIA+ GAD
Sbjct: 424 RVQEGVPEISRKAFGQSLD--------THGY--PVTDKARDGRWRAGIAVRGAD 467
>gi|5730280|emb|CAB52501.1| (AJ131519) putative DNA-polymerase or
DNA-primase [Lactobacillus bacteriophage phi adh]
Length = 771
Score = 229 bits (578), Expect = 7e-59
Identities = 147/457 (32%), Positives = 228/457 (49%), Gaps = 35/457 (7%)
Query: 344 DMANAVRIAKHYGKRLMVS--GDRWFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQWRT 401
DM A R + ++ S + W+V+ G++W D L+ K+I +
Sbjct: 323 DMGMAQRFLDMFPHSIIYSMVDETWYVYNGSYWKQDNQG--LIEKAADKVINNLKNEKHV 380
Query: 402 KRADTEKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCMIAVKPKQLDTDPWLLNCA 461
D +++ K A + + KR RS+ M+ K ++ V Q D + LLN
Sbjct: 381 IPEDVDEDDYKKA-----WKKFEKRERSRSSKVNMVNEIKHLVPVLHNQWDQEHMLLNTP 435
Query: 462 NGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEEGQAQQPLSDFLQ 521
+G +DL GTL H+ T+ V+++ + P++ K L + Q Q L F+Q
Sbjct: 436 SGYIDLTNGTLHNHKYNKMFTQETGVDFSENVDCPLWIKFLNQTF----QNDQELIHFVQ 491
Query: 522 RWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDA--GHDRH 579
+ GY TGS E K+ ++YG GRNGKS LL+++ I G YA +M G +
Sbjct: 492 KIIGYSLTGSNAEQKMFILYGNGRNGKSVLLNIVKYIFGSYAKTMNATTIMQKRIGSSQG 551
Query: 580 PT-EIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKLQLL 638
T +IA L G R+V +E +EG L E VKQ TGGD L ARY F+F P KL +
Sbjct: 552 ATSDIARLEGARLVVSSEANEGDRLDESLVKQMTGGDTLVARYQYGKDFEFDPVFKLFMA 611
Query: 639 TNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAW 698
TNHKP I G D GIW RL++IPF + + +D K+ +KL AE G+L W
Sbjct: 612 TNHKPKIYGTDEGIWRRLVIIPFTHT----------VKKENVDKKLEDKLKAESMGILKW 661
Query: 699 LVAGAVEWYREGLNPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLY 758
+ GA+ W EGLNPP+++++A +Y+ E D + FI + CV ++ KL +
Sbjct: 662 AIEGAMMWQSEGLNPPDVIQNAGNEYRKEMDVIEAFIDECCVTNDSYKVKLPTYL----- 716
Query: 759 PAYTQWCKDSGVY-ALSKVRFLGELERCVPKFRKKHV 794
AY W ++ + ++ +F E+ + +F +K +
Sbjct: 717 DAYKNWANETNNWEGMNNTKFGKEITK---RFERKRL 750
>gi|4336104|gb|AAD17635| (AF068845) gp70; similar to fc31 gp9a
[Mycobacteriophage TM4]
Length = 867
Score = 225 bits (567), Expect = 1e-57
Identities = 150/445 (33%), Positives = 216/445 (47%), Gaps = 42/445 (9%)
Query: 343 TDMANAVRIAKHYGKRLM--VSGDRWFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQWR 400
TD NA + + RL +W VW+GT W D + + + +VE
Sbjct: 410 TDTGNADLLVRACSDRLRWCPESGKWLVWKGTRWQPSPDGGEAIMAAIEVVQSIKVE--- 466
Query: 401 TKRADTEKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCM--IAVKPKQLDTDPWLL 458
D +K ++ RS R +++ M+ALAKC + V LD DP+ L
Sbjct: 467 ----DGDKAGGQHKM----------RSLQRRSLDNMVALAKCRPGMRVSLADLDADPYAL 512
Query: 459 NCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEEGQAQQPLSD 518
N +G V+L+TG L HRPE + TRV Y D AAP + L R + + +
Sbjct: 513 NTPSGVVNLKTGELTPHRPEGWHTRVTGAGYERDGAAPRWWAFLHRTF----GGDKSMVE 568
Query: 519 FLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDR 578
++QR GY A G V H L ++G G NGKS L+D++S +LG YA + APG + AG +R
Sbjct: 569 YVQRLAGYAAIGEVTHHVLPFLFGAGSNGKSVLMDVLSAVLGDYA-ITAPGNFLLAGRER 627
Query: 579 HPTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKLQLL 638
H TEIA L G R+V +E + E VK TGGD+L R+MR DFFDF P+H L L+
Sbjct: 628 HETEIARLHGARLVVCSEVNADSKFDEAKVKLLTGGDVLSGRFMRQDFFDFVPSHTLFLM 687
Query: 639 TNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAW 698
NH+P +K + R LIPF+ E VE G+A + +A E + +LAW
Sbjct: 688 GNHQPDVKAGGTSFFRRFRLIPFEHIVPERERVE-GLAH--------QLVAEEGDAILAW 738
Query: 699 LVAGAVEWYREGLNPPEIVRDASKDYQTE-QDRVTQFISDECVLGMEHEEKLTAPMGGGL 757
+ GA + G+ P V A+ YQ + + V +F+ + C +G E G +
Sbjct: 739 IADGARQVLDGGMREPASVLAATAQYQDDTRTGVARFLDECCTIGEGEAEV------GAV 792
Query: 758 YPAYTQWCKDSGVYALSKVRFLGEL 782
+ Y W G + +F EL
Sbjct: 793 HQCYIAWAIAHGEPLVDTAKFGREL 817
>gi|3947483|emb|CAA07134.1| (AJ006589) gp9a [Bacteriophage phi-C31]
Length = 720
Score = 213 bits (538), Expect = 3e-54
Identities = 140/451 (31%), Positives = 215/451 (47%), Gaps = 48/451 (10%)
Query: 340 YLTTDMANA-VRIAKHYGKRLMVSGDRWFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQ 398
Y +D NA +A G+ SG +FVW+G W +K + +R E+
Sbjct: 275 YGESDAMNAHALVAWTDGRIKYASGLGYFVWDGVTW-----------VKSATRVRQEIHA 323
Query: 399 WRTKRADTEKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCM--IAVKPKQLDTDPW 456
A + A + M + ++A+M + + + V+ ++ D +
Sbjct: 324 MGA------------ALVLAGCLPESRGFTMTTRIDALMTELRSVPSVHVEAEEFDANAH 371
Query: 457 LLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEEGQAQQPL 516
LL+ ANG VDLRTG L+AH D +T +P+ Y P+A AP + + L+ I L
Sbjct: 372 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNAD----L 427
Query: 517 SDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGH 576
+++R GY TG+ E AV++G G NGKS + ++ + GR D G+
Sbjct: 428 VGYMRRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGN 487
Query: 577 DRH-PTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKL 635
P ++A L G R+V +E G + E +K+ TG D + AR++R +FF F PT +
Sbjct: 488 GGGIPNDLAALRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFLRQEFFTFAPTFLI 547
Query: 636 QLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGV 695
L TNHKP K QD G+W R+ LIPF F E D+ + KL AE G+
Sbjct: 548 MLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEER----------DYDLDRKLRAESAGI 597
Query: 696 LAWLVAGAVEWYREGLNPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGG 755
+AW V GAVEWY GL PE + A+++Y+ D + F VL + + + G
Sbjct: 598 VAWAVRGAVEWYANGLGDPESISTATREYRATSDALAGFFPG--VLDAADDSAIVS--GA 653
Query: 756 GLYPAYTQWCKDSGVYAL---SKVRFLGELE 783
Y +Y WC+ G+ + S+ F G +E
Sbjct: 654 DAYNSYRDWCEAEGLKSTEVWSRKAFYGAME 684
>gi|6466120|gb|AAF12794.1|AF195093_1 (AF195093) putative
DNA-primase/helicase [Streptomyces coelicolor A3(2)]
Length = 411
Score = 172 bits (432), Expect = 9e-42
Identities = 105/275 (38%), Positives = 137/275 (49%), Gaps = 16/275 (5%)
Query: 514 QPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMD 573
Q + D+L GY TG V L ++G G+NGKS LLD++ +LG YA A PG LM
Sbjct: 119 QQMIDYLHLLLGYSITGDVGAQILPFLWGTGKNGKSVLLDVMMKLLGDYADAAPPGFLMA 178
Query: 574 AGHDRHPTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTH 633
+ HPT++A+L GRR+ +E G E VK TGGD +KAR MR D F F+PTH
Sbjct: 179 KPFEGHPTDLAELHGRRVYVCSEIKPGDKFDEARVKLLTGGDRIKARRMRQDPFSFEPTH 238
Query: 634 KLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAERE 693
KL LL NHKP + W R+ LIPF+ + ID+ + E
Sbjct: 239 KLWLLGNHKPEVGTGGFAFWRRMRLIPFERVVPDDRK---------IDNLADLLVMEEGP 289
Query: 694 GVLAWLVAGAVEWY--REGLNPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTA 751
G+LAWL+ GA + L PE VR A+ Y +D +F + C LG E + TA
Sbjct: 290 GILAWLIDGARRYLGGDRDLTGPERVRIATTAYAETEDHTGRFYEECCRLGPELRAEQTA 349
Query: 752 PMGGGLYPAYTQWCKDSGVYALSKVRFLGELERCV 786
LY AYT WC + G +S F V
Sbjct: 350 -----LYAAYTAWCHNEGAQIISSRAFASRTRELV 379
>gi|3192005|emb|CAA19404| (AL023797) putative ATP binding protein
[Streptomyces coelicolor]
Length = 756
Score = 153 bits (382), Expect = 7e-36
Identities = 142/534 (26%), Positives = 226/534 (41%), Gaps = 54/534 (10%)
Query: 263 HTQASNPTATVYYPAHTGGYANGAF--VCQHAHCRGLPQTAFLHEIGIYSDEEMLAMFED 320
H++A+ P G NG V H ++LHE+ E + +D
Sbjct: 213 HSRAATLAELRALPPDDPGRGNGWLTQVAGHLARNHTDHDSYLHELRAIDSESEVPHDKD 272
Query: 321 LTDAPATLAVERH-----------DVPEAL---YLTTDMANAVRIAKHYGKRLM-VSGDR 365
A ER D P+++ + TD+ N R+ +G+ + G
Sbjct: 273 RFMKTADSIWEREQAKERPKAAAPDKPKSILWHHEHTDLGNGRRLRDLHGEDMRHAPGWG 332
Query: 366 WFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGK 425
W W+G WA AR ++ I +E EK++S + L W
Sbjct: 333 WLTWDGRRWARGDGQARRFMHSVADAISEAIESME------EKQRSDD------LMRWFG 380
Query: 426 RSEMRSTVEAMMALAKCMIAVKPK--QLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTR 483
RS + A + A M+ ++ + D DP L NG VDLRTG L + +TR
Sbjct: 381 RSCSGPGISAALNEASVMLPIETEISDFDADPHKLLVGNGVVDLRTGELLPVDRKYLLTR 440
Query: 484 VVPVNYTPDAAAPVFRKTLERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGM 543
V Y P+A P++ L Q + +++QR FG C G+ +YG
Sbjct: 441 GTTVEYDPNADCPMWMDFLGWAF----QGDIEMIEYIQRMFGMCLIGNNAHQVAFFLYGP 496
Query: 544 GRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTVNETSEGGLL 603
GR+GK+TL ++S +LG YA +A + + H +A L G R+V +ET +G +
Sbjct: 497 GRSGKTTLTRVLSRLLGDYA-TSADLSVFNESSSGHNEPLARLAGARLVVFSETRQGQRI 555
Query: 604 REGFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKA 663
E K+ TG D L A Y +F+F P + N +P I D G+ R+ +IP +A
Sbjct: 556 NEAQFKKFTGEDTLTASYKNKSWFEFLPAFTPVMFGNAQPSI-AFDSGVERRMKVIPMRA 614
Query: 664 RFGTAEEVEAGIAQYPIDHKITEKLAA-EREGVLAWLVAGAVEWYREGLNP-PEIVRDAS 721
+ ++ + K+ E++ E ++AW V GA E P P V A
Sbjct: 615 QISDGQK----------NPKLVEQMMLNEGPAIMAWAVEGARLTAAESFVPDPPQVAQAV 664
Query: 722 KDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYALSK 775
K+Y+ E D + FI +EC++ E + + G Y++W + GV + K
Sbjct: 665 KEYKRENDHIGDFI-EECLVFDEGATVASDVVWG----RYSKWIEAGGVDFVKK 713
>gi|481605|pir||S38922 hypothetical protein 10 - phage phi-C31
>gi|579075|emb|CAA53906| (X76288) ORF 10 [Bacteriophage
phi-C31]
Length = 202
Score = 120 bits (299), Expect = 4e-26
Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 17/179 (9%)
Query: 608 VKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGT 667
+K+ TG D + AR++R +FF F PT + L TNHKP K QD G+W R+ LIPF F
Sbjct: 2 LKRVTGKDKVTARFLRQEFFTFAPTFLIMLATNHKPKFKSQDEGLWRRVKLIPFVRYFAP 61
Query: 668 AEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLNPPEIVRDASKDYQTE 727
E D+ + KL AE G++AW V GAVEWY GL PE + A+++Y+
Sbjct: 62 EER----------DYDLDRKLRAESAGIVAWAVRGAVEWYANGLGDPESISTATREYRAT 111
Query: 728 QDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYAL---SKVRFLGELE 783
D + F VL + + + G Y +Y WC+ G+ + S+ F G +E
Sbjct: 112 SDALAGFFPG--VLDAADDSAIVS--GADAYNSYRDWCEAEGLKSTEVWSRKAFYGAME 166
>gi|481604|pir||S38921 hypothetical protein 9 - phage phi-C31
>gi|432620|emb|CAA53920| (X76288) ORF 9 [Bacteriophage
phi-C31]
Length = 519
Score = 98.3 bits (241), Expect = 2e-19
Identities = 75/270 (27%), Positives = 122/270 (44%), Gaps = 31/270 (11%)
Query: 340 YLTTDMANA-VRIAKHYGKRLMVSGDRWFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQ 398
Y +D NA +A G+ SG +FVW+G W +K + +R E+
Sbjct: 275 YGESDAMNAHALVAWTDGRIKYASGLGYFVWDGVTW-----------VKSATRVRQEIHA 323
Query: 399 WRTKRADTEKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCM--IAVKPKQLDTDPW 456
A + A + M + ++A+M + + + V+ ++ D +
Sbjct: 324 MGA------------ALVLAGCLPESRGFTMTTRIDALMTELRSVPSVHVEAEEFDANAH 371
Query: 457 LLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEEGQAQQPL 516
LL+ ANG VDLRTG L+AH D +T +P+ Y P+A AP + + L+ I L
Sbjct: 372 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNAD----L 427
Query: 517 SDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGH 576
+++R GY TG+ E AV++G G NGKS + ++ + GR D G+
Sbjct: 428 VGYMRRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGN 487
Query: 577 DRH-PTEIADLVGRRMVTVNETSEGGLLRE 605
P ++A L G R+V +E S R+
Sbjct: 488 GGGIPNDLAALRGSRLVMASEASRASPCRK 517
>gi|2738452 (AF003534) hypothetical protein 103R [Chilo iridescent
virus]
Length = 971
Score = 67.1 bits (161), Expect = 5e-10
Identities = 84/352 (23%), Positives = 141/352 (39%), Gaps = 38/352 (10%)
Query: 329 AVERHDVPEALYLTTDMANAVRIAKHYGKRLMVSGDRWFVWEGTHWAHDTDAARLLALKL 388
+V RH P + L+ N + K+ K L + + + D D+A K
Sbjct: 470 SVGRHMRPSLVSLSRSYLNLIPALKYITKTLQNDDEGYEPSDSGFGFDDDDSASTSGGKT 529
Query: 389 SKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCMIAVKP 448
+ E K N+KI + K+ + ++M + + MI +
Sbjct: 530 T----------------AEITKLVNSKIKL-INDLAKKCQNNGPQMSLMKVIEDMIGIDN 572
Query: 449 --KQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTR--VVPVNYTPDAAAPVFRKTL-- 502
++D + L+ NG DL T + PEDY+TR +P + T P K L
Sbjct: 573 LNDKMDQNKQLIAFTNGVYDLSLFTFRQGLPEDYITRQMTIPYDITLTMENPKVIKMLNF 632
Query: 503 -ERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGR 561
++I +E + + + + + G R+ L + G G NGKS +I G+
Sbjct: 633 FKKIFPDEELFEYFMLENCEMYIG-----GNRDKILQIWTGEGDNGKSVTNKIIENKFGK 687
Query: 562 YAGVAAPGLLMDAGHDRHPTEIADLV----GRRMVTVNETSEGGLLREGFVKQATGG-DM 616
+ V P ++ + +L G R V+E + + G +K TGG D
Sbjct: 688 LS-VKFPKGMVTGDPPKAGACFPELTRAQRGVRWAVVDEFAPDETVNAGVIKNLTGGIDN 746
Query: 617 LKARYMRA---DFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARF 665
L AR ++ D D P KL + N P I+ D W+R+ +IPF++ F
Sbjct: 747 LYARDIQQKGKDVIDIDPFFKLIFICNTIPNIRNPDNATWNRIRVIPFESTF 798
>gi|1345114 (U36383) ORF904; Method: conceptual translation
supplied by author [Sulfolobus islandicus]
Length = 904
Score = 51.9 bits (122), Expect = 2e-05
Identities = 63/251 (25%), Positives = 103/251 (40%), Gaps = 30/251 (11%)
Query: 535 HKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTV 594
+K ++ G G NGKST L+L+ ILG+ V+A L DR + +L +
Sbjct: 573 NKAILLTGAGANGKSTFLNLLLKILGQ-KNVSAMPLKRIMESDRFAS--IELFHKLANVS 629
Query: 595 NETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWS 654
+E + K+ TG D ++ + D F KL TN PV+ Q G W
Sbjct: 630 SELFAFKITNTDLFKKLTGEDYIEGQKKFRDPIYFINYAKLFNATNELPVVSDQSYGFWR 689
Query: 655 RLMLIPFKARFGTAEEVEAGIAQYPIDHKITEK--LAAEREGVL-AWLVAGAVEWYREGL 711
R ++I F Q+P D +K E EGV+ ++A A ++
Sbjct: 690 RWIVIEFP-------------HQFPPDPNFFDKTFTVEEVEGVITVAVIAFARVLQQKKF 736
Query: 712 NPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGL-------YPAYTQW 764
+ + + + ++ + D V F+ + +E E P G L Y AY +W
Sbjct: 737 DFEDSSANVKELWERKTDSVYAFVKEL----LETERAEYDPANGDLFMPTEDFYQAYLEW 792
Query: 765 CKDSGVYALSK 775
+++ A SK
Sbjct: 793 SEENDTKAESK 803
>gi|780441 (U18466) pC962R [African swine fever virus]
>gi|1097461|prf||2113434BY C962R gene [African swine
fever virus]
Length = 962
Score = 47.3 bits (110), Expect = 5e-04
Identities = 59/223 (26%), Positives = 88/223 (39%), Gaps = 12/223 (5%)
Query: 451 LDTDPWLLNCANGTVDLRTGTLKA--HRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCE 508
LDT+P LL NG + + T K H E + + + Y P + K L
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNAL-- 601
Query: 509 EGQAQQPLSDFLQRWFGYCATGSVREHKLAVMY---GMGRNGKSTLLDLISGILG-RYAG 564
Q P D Y +T R K A+M G G NGK+ L+ L++ +LG YA
Sbjct: 602 --QDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYAS 659
Query: 565 VAAPGLLMDAGH--DRHPTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYM 622
LL ++ + L GR ET++ +L +K+ + AR +
Sbjct: 660 KLNISLLTSCRETAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTAREL 719
Query: 623 RADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARF 665
FQ T + +N+ +I D G W RL K +F
Sbjct: 720 NQKQESFQMTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKF 762
>gi|4530172|gb|AAD21912.1| (AF085222) putative primase
[Streptococcus thermophilus bacteriophage DT1]
Length = 504
Score = 44.9 bits (104), Expect = 0.003
Identities = 56/251 (22%), Positives = 107/251 (42%), Gaps = 26/251 (10%)
Query: 540 MYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTVNETSE 599
+ G G +GK T LIS ++G AP L ++ +R I + G+ ++ ++
Sbjct: 230 LVGNGNDGKGTFQQLISNLVGLKN--VAP-LKINQFSERFGLAIIE--GKTVIIGDDVQA 284
Query: 600 GGLLREG--FVKQATGGDM-LKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRL 656
G + E F TG + ++ + F+ T + TN PV K + G + R+
Sbjct: 285 GIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKT--VIQSTNAMPVFKNKSNGTYRRI 342
Query: 657 MLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLNPPEI 716
++IPFK FG ++ A Y R+ VL +++ A+ + N P+
Sbjct: 343 VIIPFKKTFGINDDNWAIKDDY-----------INRKEVLEYVLWKAINLDFDKFNEPKA 391
Query: 717 VRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYALSKV 776
++ ++++ E + V +F+++ + P+ L+ Y WC + K
Sbjct: 392 TQERMQEFKEENNTVYKFLNEY----LSDVVSTRIPV-RFLWDVYRSWCHEGNHTIPKKS 446
Query: 777 RFLGELERCVP 787
F EL + +P
Sbjct: 447 NFEKELAQNLP 457
>gi|1930088 (U93082) helicase-like protein; ORF980 [Sulfolobus
islandicus]
Length = 979
Score = 44.5 bits (103), Expect = 0.003
Identities = 73/287 (25%), Positives = 112/287 (38%), Gaps = 30/287 (10%)
Query: 536 KLAVMY-GMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTV 594
KLA M G +GKST L L+ ILG+ V+ + + D + +A + ++V +
Sbjct: 563 KLAFMLLGPRDSGKSTFLQLLKRILGKQNTVS---IRLRELFDPNNRFVAGFLFHKLVNL 619
Query: 595 N-ETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQ-DVGI 652
ET E + K TGGD + + F P KL + +N P I+ + D
Sbjct: 620 TAETKEYTIEDIDRFKTLTGGDQITSDVKFKGPITFTPYAKLIIASNKLPDIRDKNDTAF 679
Query: 653 WSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREG-- 710
W R ++I F +F + TE+ E EG+L + G
Sbjct: 680 WRRWLIIEFPNQFPNDDNW--------FRQTFTEE---EIEGILTVSILAFARVMSRGQF 728
Query: 711 --LNPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGG---GLYPAYTQWC 765
PE VRD + D V F+ G + A + LY Y +C
Sbjct: 729 DYQQTPEEVRDL---WLYNIDSVWSFVRTYEKKGFITVDPRNADLWVPRIELYKLYKDYC 785
Query: 766 KDSGVYALSKVRFLGELERCVP-KFRKKHVYETPEGG--KRRMFLVI 809
D+G +S F +L + KK+ + P G +RR F+ I
Sbjct: 786 MDNGFPGVSLKTFANKLNKYFGITSMKKYFGKDPNGKEIRRRCFVGI 832
>gi|2352442 (AF004379) orf382 [Streptococcus thermophilus
bacteriophage Sfi21]
>gi|5524055|gb|AAD44107.1|AF115103_37 (AF115103) orf382
gp [Streptococcus thermophilus bacteriophage Sfi21]
Length = 382
Score = 43.4 bits (100), Expect = 0.008
Identities = 55/251 (21%), Positives = 107/251 (41%), Gaps = 26/251 (10%)
Query: 540 MYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTVNETSE 599
+ G G +GK T LIS ++G AP L ++ +R I + G+ ++ ++
Sbjct: 108 LVGNGNDGKGTFQQLISNLVGLKN--VAP-LKLNQFSERFGLAIIE--GKTVIIGDDVQA 162
Query: 600 GGLLREG--FVKQATGGDM-LKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRL 656
G + E F TG + ++ + F+ T + TN PV K + G + R+
Sbjct: 163 GIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKT--VIQSTNAMPVFKNKSNGTYRRI 220
Query: 657 MLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLNPPEI 716
++IPFK FG ++ A Y R+ VL +++ A+ + + P+
Sbjct: 221 VIIPFKKTFGINDDNWAIKDDY-----------INRKEVLEYVLWKAINLDFDKFSEPKA 269
Query: 717 VRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYALSKV 776
++ ++++ E + V +F+++ + P+ L+ Y WC + K
Sbjct: 270 TQERMQEFKEENNTVYKFLNEY----LSDVVSTRIPV-RFLWDVYRSWCHEGNHTIPKKS 324
Query: 777 RFLGELERCVP 787
F EL + +P
Sbjct: 325 NFEKELAQNLP 335
>gi|2444093 (U88974) ORF13 [Streptococcus thermophilus temperate
bacteriophage O1205]
Length = 504
Score = 43.4 bits (100), Expect = 0.008
Identities = 55/251 (21%), Positives = 107/251 (41%), Gaps = 26/251 (10%)
Query: 540 MYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTVNETSE 599
+ G G +GK T LIS ++G AP L ++ +R I + G+ ++ ++
Sbjct: 230 LVGNGNDGKGTFQQLISNLVGLKN--VAP-LKLNQFSERFGLAIIE--GKTVIIGDDVQA 284
Query: 600 GGLLREG--FVKQATGGDM-LKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRL 656
G + E F TG + ++ + F+ T + TN PV K + G + R+
Sbjct: 285 GIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKT--VIQSTNAMPVFKNKSNGTYRRI 342
Query: 657 MLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLNPPEI 716
++IPFK FG ++ A Y R+ VL +++ A+ + + P+
Sbjct: 343 VIIPFKKTFGINDDNWAIKDDY-----------INRKEVLEYVLWKAINLDFDKFSEPKA 391
Query: 717 VRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYALSKV 776
++ ++++ E + V +F+++ + P+ L+ Y WC + K
Sbjct: 392 TQERMQEFKEENNTVYKFLNEY----LSDVVSTRIPV-RFLWDVYRSWCHEGNHTIPKKS 446
Query: 777 RFLGELERCVP 787
F EL + +P
Sbjct: 447 NFEKELAQNLP 457
>gi|4049997 (AF077306) putative primase; gp506 [Streptococcus
thermophilus bacteriophage Sfi19]
>gi|5524021|gb|AAD44074.1|AF115102_33 (AF115102) orf508
gp [Streptococcus thermophilus bacteriophage Sfi19]
Length = 506
Score = 43.4 bits (100), Expect = 0.008
Identities = 55/251 (21%), Positives = 107/251 (41%), Gaps = 26/251 (10%)
Query: 540 MYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTVNETSE 599
+ G G +GK T LIS ++G AP L ++ +R I + G+ ++ ++
Sbjct: 232 LVGNGNDGKGTFQQLISNLVGLKN--VAP-LKLNQFSERFGLAIIE--GKTVIIGDDVQA 286
Query: 600 GGLLREG--FVKQATGGDM-LKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRL 656
G + E F TG + ++ + F+ T + TN PV K + G + R+
Sbjct: 287 GIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKT--VIQSTNAMPVFKNKSNGTYRRI 344
Query: 657 MLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLNPPEI 716
++IPFK FG ++ A Y R+ VL +++ A+ + + P+
Sbjct: 345 VIIPFKKTFGINDDNWAIKDDY-----------INRKEVLEYVLWKAINLDFDKFSEPKA 393
Query: 717 VRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYALSKV 776
++ ++++ E + V +F+++ + P+ L+ Y WC + K
Sbjct: 394 TQERMQEFKEENNTVYKFLNEY----LSDVVSTRIPV-RFLWDVYRSWCHEGNHTIPKKS 448
Query: 777 RFLGELERCVP 787
F EL + +P
Sbjct: 449 NFEKELAQNLP 459
>gi|6739647|gb|AAF27348.1|AF198256_2 (AF198256) phage phi-R73
primase-like protein [Haemophilus influenzae]
Length = 589
Score = 43.0 bits (99), Expect = 0.010
Identities = 51/235 (21%), Positives = 95/235 (39%), Gaps = 18/235 (7%)
Query: 431 STVEAMMALAKCMIAVKPKQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYT 490
ST+E ++ K + P+ + L+ NG ++ T ++H ++++T +P Y
Sbjct: 213 STIERLIKTLKAQL---PRMGEMSNDLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYD 269
Query: 491 PDAA-APVFRKTLERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKS 549
A P+F K L ++ + + L T + G G +GKS
Sbjct: 270 KQATDTPLFDKWLSFVSDGNKDKARNILAVLYA----ILTNRYNWQMFFEITGKGGSGKS 325
Query: 550 TLLDLISGILGRYAGVAAPGLLMDAGHDRHPTE--IADLVGRRMVTVNETSEGGLLREGF 607
I+ +L A+ L ++ E ++ L + ++ E S+ G
Sbjct: 326 VFAS-IATLLAGVKNTASSNL------EKFDDERGLSGLENKTLILCPEQSKYAGDGSG- 377
Query: 608 VKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFK 662
+K TGGD ++ RY D FD + T + L+ N + G+ R ++ FK
Sbjct: 378 LKSITGGDTVRVRYNYQDPFDVKITALVMLINNRPCSFTERSGGVDRRRVIFDFK 432
>gi|5420103|emb|CAB46558.1| (AJ242479) putative DNA primase
[Streptococcus thermophilus]
Length = 556
Score = 41.4 bits (95), Expect = 0.029
Identities = 70/334 (20%), Positives = 128/334 (37%), Gaps = 34/334 (10%)
Query: 469 TGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEE-GQAQQPLSDFLQRWFGYC 527
TG P +TR V + Y PDA P+ + + + D +
Sbjct: 201 TGEFTQFDPRIIVTRKVRMGYNPDATEPIIDGWKPTVWLKGLFNGDRDSYDLAIQIIRAT 260
Query: 528 ATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLV 587
TG E+ + +YG G GK T L+ ++G VA+ +D + T I L+
Sbjct: 261 ITGKTLEN-IFWLYGEGGTGKGTFQTLLENLVGS-ENVAS--FKIDGASGKFDTSI--LI 314
Query: 588 GRRMVTVNETSEGGLLRE-GFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIK 646
G+ +V ++ + ++++ V GD ++ + + + +N P +
Sbjct: 315 GKTVVIGDDIQKDVVIKDTSVVFSLATGDPIRIEDKGKRPYTTRKRMTVVQSSNGFPRMN 374
Query: 647 GQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEW 706
I R ++ F G A D +I +E VL + V A+E
Sbjct: 375 ADQKAINRRFRVLTFSELKGKA------------DKRIKNDYVGRKE-VLEYFVKLAIET 421
Query: 707 YREGLNPP---EIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQ 763
+NP E + +A K+ D V +F +DE + K G ++ +
Sbjct: 422 PFRDVNPQKSIEFLDEAYKEMNPVADFVDRFFNDEVI-------KCNYVPNGYVFECFKA 474
Query: 764 WCK--DSGVYALSKVRFLGELERCVPK-FRKKHV 794
+C+ + Y L+ ++++ +PK FR K V
Sbjct: 475 YCEKNQNRNYFLNSRTLHKQIKKILPKTFRPKEV 508
>gi|93819|pir||C41830 DNA primase - phage phi-R73
Length = 777
Score = 41.0 bits (94), Expect = 0.039
Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 23/249 (9%)
Query: 448 PKQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTP-------DAAAPVFRK 500
P+Q L+ NG +D + GT H P +M + V++TP + AP F +
Sbjct: 404 PQQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWR 463
Query: 501 TLERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILG 560
L+R G + L F A + L V G G +GKS + ++ + + G
Sbjct: 464 WLDRAA---GGCAEKRDVILAALFMVLANRYDWQLFLEVT-GPGGSGKSIMAEIATLLAG 519
Query: 561 RYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKAR 620
+A +++ P E A L G ++ + + + G +K TGGD +
Sbjct: 520 EDNATSATIETLES-----PRERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVD 573
Query: 621 YMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPI 680
D + + + N+ + G+ R ++I F + E +
Sbjct: 574 PKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQER------DPQL 627
Query: 681 DHKITEKLA 689
KIT +LA
Sbjct: 628 KDKITRELA 636
>gi|130905|sp|P10277|PRIM_BPP4 PUTATIVE P4-SPECIFIC DNA PRIMASE
>gi|75895|pir||RPBPP4 DNA primase - satellite phage P4
>gi|15152|emb|CAA29111| (X05623) alpha gene
(pot.P4-specific DNA primase ) (AA 1-777) [Bacteriophage
P4] >gi|15158|emb|CAA35898| (X51522) alpha gene product
(AA 1-777) [Bacteriophage P4]
Length = 777
Score = 40.6 bits (93), Expect = 0.051
Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 23/249 (9%)
Query: 448 PKQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTP-------DAAAPVFRK 500
P+Q L+ NG +D + GT H P +M + V++TP + AP F +
Sbjct: 404 PQQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWR 463
Query: 501 TLERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILG 560
L+R G + L F A + L V G G +GKS + ++ + + G
Sbjct: 464 WLDRAA---GGRAEKRDVILAALFMVLANRYDWQLFLEVT-GPGGSGKSIMAEIATLLAG 519
Query: 561 RYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKAR 620
+A +++ P E A L G ++ + + + G +K TGGD +
Sbjct: 520 EDNATSATIETLES-----PRERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVD 573
Query: 621 YMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPI 680
D + + + N+ + G+ R ++I F + E +
Sbjct: 574 PKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQER------DPQL 627
Query: 681 DHKITEKLA 689
KIT +LA
Sbjct: 628 KDKITRELA 636
>gi|6681622|dbj|BAA88797.1| (AB015885) similar to vaccinia D5R [Yaba
monkey tumor virus]
Length = 786
Score = 39.5 bits (90), Expect = 0.11
Identities = 62/282 (21%), Positives = 112/282 (38%), Gaps = 29/282 (10%)
Query: 450 QLDTDPWLLNCANGTVDLRTGTLK-AHRPEDYMTRV-VPVNYTPDAAAPVFRKTLERITC 507
+ DT P +L NG +D+ +G+ + ++ V N+ D ++ +TC
Sbjct: 405 ETDTYPHILPFKNGVLDITSGSFYYGEESKKFICTVSTDFNFEMDKFLDNDSNEIKELTC 464
Query: 508 EEGQAQQPLSDFL------QRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGR 561
Q + L +R C GS ++ + +G GKST L+ +G
Sbjct: 465 IIDDIQPKTCENLKNRELYERTLSSCLCGSTKQC-ITFFFGETATGKSTTKRLLQSAIGD 523
Query: 562 YAGVAAPGLLMDAGHDRHPTE-IADLVGRRMVTVNET-----SEGGLLREGFVKQATGGD 615
+L D D+ P I+++ +R V +E S +R VK+ T
Sbjct: 524 LFIETGQTILTDL-MDKGPNPFISNMHLKRSVFCSELPDFACSGSKKIRADNVKKLTE-P 581
Query: 616 MLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGI 675
+ R ++ + + + + TN+KP+ D + R+ LI F+ F VEA
Sbjct: 582 CIVGRSCFSNKINNRNHASIIIDTNYKPIFDRVDCALMRRVSLIKFRTHFSQPTNVEAAK 641
Query: 676 AQ------YPIDHKITEKLAAE--REGVLAWLVAGAVEWYRE 709
+ P+D + K+ + R L L V+WY++
Sbjct: 642 SNSAYDDVKPLDENLDMKIQKKCYRFAFLNML----VKWYQK 679
>gi|3059074|emb|CAA12526.1| (AJ225333) primase [Acidianus
ambivalens]
Length = 909
Score = 38.3 bits (87), Expect = 0.26
Identities = 65/283 (22%), Positives = 113/283 (38%), Gaps = 22/283 (7%)
Query: 536 KLAVMY-GMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPTEIADLVGRRMVTV 594
KLA M G +GKST L L+ ILG++ V+ + + D + + + ++ +
Sbjct: 567 KLAFMLLGPRDSGKSTFLQLLKKILGKHNTVS---IRVKELFDSNNRFVMGYLFHKLANL 623
Query: 595 N-ETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQ-DVGI 652
ET E + K TGGD + + F P K+ + +N P + + D+
Sbjct: 624 TAETKEYTINDIDRFKTLTGGDQVTSDVKFNGPITFTPYAKIIIASNKLPNVSDKNDMAF 683
Query: 653 WSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLN 712
W R ++I F F + Q + +I L ++ G ++ +
Sbjct: 684 WRRWLIIEFPNTFPNDDN---WFRQTFTEEEIEGILTVSILAFARVIINGKFDYQQ---- 736
Query: 713 PPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPM---GGGLYPAYTQWCKDSG 769
PE VR + D V FI G+ + A + LY Y ++C D+G
Sbjct: 737 TPEEVRGL---WLNNIDSVWSFIKTYVEKGIITLDPRNADLWVPRKELYNLYKEYCLDNG 793
Query: 770 VYALSKVRFLGELERCVP-KFRKKHVYETPEG--GKRRMFLVI 809
+S F +L + KK+ + P+G ++R F+ I
Sbjct: 794 FPGVSLRTFANKLNKYFGITSMKKNFGKKPDGTDDRKRCFVGI 836
>gi|6578610|gb|AAF17964.1|AF170722_82 (AF170722) gp080R [Rabbit
fibroma virus]
Length = 786
Score = 36.7 bits (83), Expect = 0.75
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 37/240 (15%)
Query: 450 QLDTDPWLLNCANGTVDLRTGTL-KAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCE 508
+ D P +L NG +D+ GT H +D++ V + F +E+ +
Sbjct: 405 ETDVYPCILPFKNGVLDISNGTFYSGHESKDFICTV----------STGFNLNMEKFLDD 454
Query: 509 EGQAQ----------QPLSD-------FLQRWFGYCATGSVREHKLAVMYGMGRNGKSTL 551
+ + QPL++ +R C G+ ++ + +G GKST
Sbjct: 455 DSEEMKELVSIINDIQPLTEENKQNRELYERTLSSCLCGTTKQC-ITFFFGETATGKSTT 513
Query: 552 LDLISGILGRYAGVAAPGLLMDAGHDRHPTE-IADLVGRRMVTVNET-----SEGGLLRE 605
L+ +G +L +A D+ P IA++ +R V +E S +R
Sbjct: 514 KKLLHSAIGNLFIETGQTILTEA-MDKGPNPFIANMHLKRSVFCSELPDFACSTSRRIRA 572
Query: 606 GFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARF 665
+K+ T + R ++ + + + + TN+KPV D I R+ L+ F+ F
Sbjct: 573 DNIKKLTE-PCIVGRQCFSNRINNKNHASIIIDTNYKPVFDRVDNAIMRRISLVRFRTHF 631
>gi|1055056 (U39850) coded for by C. elegans cDNA yk34g10.5; coded for
by C. elegans cDNA yk7g11.5; coded for by C. elegans cDNA
yk19a9.5 [Caenorhabditis elegans]
Length = 1165
Score = 35.6 bits (80), Expect = 1.7
Identities = 17/42 (40%), Positives = 29/42 (68%)
Query: 393 RGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKRSEMRSTVE 434
R E+E+ R K+ TE+EK K A++ AL+ GK + +++TV+
Sbjct: 1097 RDELERLRNKKHTTEEEKIKMARLQNALKVVGKAAGLKATVK 1138
>gi|134807|sp|P16936|SPEB_ECOLI AGMATINASE (AGMATINE UREOHYDROLASE)
(AUH) >gi|281810|pir||C42604 agmatinase (EC 3.5.3.11) -
Escherichia coli >gi|147859 (M32363) agmatine
ureohydrolase [Escherichia coli] >gi|882466 (U28377)
agmatine ureohydrolase [Escherichia coli] >gi|1789306
(AE000377) agmatinase [Escherichia coli]
Length = 306
Score = 35.2 bits (79), Expect = 2.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 244 ILSSGK-----AGELFIECPLAKQHTQASNPTATVYYPAHTGGYANGAFVCQHAH 293
+L++GK G+ F+ PL + H + A V++ AHT YANG C+ H
Sbjct: 112 LLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANG---CEFDH 163
>gi|320288|pir||G41700 C5 protein - rabbit fibroma virus
Length = 786
Score = 34.0 bits (76), Expect = 5.0
Identities = 49/240 (20%), Positives = 94/240 (38%), Gaps = 37/240 (15%)
Query: 450 QLDTDPWLLNCANGTVDLRTGTL-KAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCE 508
+ D P +L NG +D+ GT H +D++ V + F +E+ +
Sbjct: 405 ETDVYPCILPFKNGVLDISNGTFYSGHESKDFICTV----------STGFNLNMEKFLDD 454
Query: 509 EGQAQ----------QPLSD-------FLQRWFGYCATGSVREHKLAVMYGMGRNGKSTL 551
+ + QPL++ +R C G+ ++ + +G GKST
Sbjct: 455 DSEEMKELVSIINDIQPLTEENKQNRELYERTLASCLCGTTKQC-ITFFFGETATGKSTT 513
Query: 552 LDLISGILGRYAGVAAPGLLMDAGHDRHPTE-IADLVGRRMVTVNET-----SEGGLLRE 605
L+ +G +L + D+ P IA++ +R V +E S +R
Sbjct: 514 KKLLHSAIGSLFIETGQTILTEV-MDKGPNPFIANMHLKRSVFCSELPDFACSTSKRIRA 572
Query: 606 GFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARF 665
+K+ T + R ++ + + + + TN+KPV D + R+ L+ F+ F
Sbjct: 573 DNIKKLTE-PCIVGRQCFSNRINNKNHASIIIDTNYKPVFDRVDNALMRRISLVRFRTHF 631
>gi|1228093|emb|CAA87011| (Z46913) polyketide synthase [Streptomyces
ambofaciens]
Length = 1198
Score = 34.0 bits (76), Expect = 5.0
Identities = 36/135 (26%), Positives = 57/135 (41%), Gaps = 13/135 (9%)
Query: 575 GHDRHP--TEIADLVGRRMVTVNETSEGGLLR-----EGFVKQATGGDMLKARYMRADFF 627
GHDR TE++DL +TV +++E G L +G + G ++ A + AD F
Sbjct: 144 GHDREALLTELSDLADAGHLTVRDSAESGRLALLFSGQGSQRLGMGRELYGAFPVFADAF 203
Query: 628 DFQPTHKLQLLTNHKPVIKGQDVGIWSRLM-----LIPFKARFGTAEEVEAGIAQYPIDH 682
D ++ L + V+ G+D G+ R + L + E + H
Sbjct: 204 D-AVCARVDLERPLREVVFGEDAGLLERTVYAQAGLFALEVALFRLVESWGVTPDVLVGH 262
Query: 683 KITEKLAAEREGVLA 697
I E AA GVL+
Sbjct: 263 SIGELAAAHVAGVLS 277
>gi|5689405|dbj|BAA82986.1| (AB028957) KIAA1034 protein [Homo
sapiens]
Length = 761
Score = 33.2 bits (74), Expect = 8.5
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 301 AFLHEIGIYSDEEMLAMFEDLTDAPATLAV-----ERHDVPEALYLTTDMANAVRIAKHY 355
+F+H++G+Y D+E + D P + +R+ V L + +AV +A++
Sbjct: 659 SFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYK 718
Query: 356 GKRLMVSGDRWFVWEGTHWAHDTDAARLLALKLSKIIRGEVEQ 398
+ L+ + EG+ + +A A K SK E++Q
Sbjct: 719 DEELLTESEENDSEEGSEEMYKVEAEEENADK-SKAAPAEIDQ 760
Database: nr
Posted date: Jan 29, 2000 11:59 PM
Number of letters in database: 138,416,789
Number of sequences in database: 449,381
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229661993
Number of Sequences: 449381
Number of extensions: 9864503
Number of successful extensions: 19984
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 19917
Number of HSP's gapped (non-prelim): 39
length of query: 819
length of database: 138,416,789
effective HSP length: 56
effective length of query: 763
effective length of database: 113,251,453
effective search space: 86410858639
effective search space used: 86410858639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 74 (33.2 bits)