BLASTP 2.0.10 [Aug-26-1999] 

Query= XF-11A05-GL17
         (105 letters)

Database: nr
           457,798 sequences; 140,871,481 total letters

                                                                Score     E
Sequences producing significant alignments:                     (bits)  Value

gi|1177194 (U44462) nef [Human immunodeficiency virus type 1]         30    6.4
gi|4160656 (AF103869) blood-stage membrane protein Ag-1 [Plasmo...    30    6.4

>gi|1177194 (U44462) nef [Human immunodeficiency virus type 1]
           Length = 204
           
 Score = 30.1 bits (66), Expect = 6.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 30  NPVPCCWSMDLYTATLDQPVAQGVPLVVGVPLLWRRPVDYFFWLTDESGLE--MDPMRQQ 87
           N   C W        +  PV   VPL    P+ ++ PVD   +L +E GLE  +   R+Q
Sbjct: 49  NNAACVWLEAQEEEEVGFPVRPQVPLR---PMTYKAPVDLSHFLKEEGGLEGLIHSQRRQ 105

Query: 88  DL 89
           D+
Sbjct: 106 DI 107


>gi|4160656 (AF103869) blood-stage membrane protein Ag-1 [Plasmodium
           yoelii]
           Length = 549
           
 Score = 30.1 bits (66), Expect = 6.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 34  CCWSMDLYTATLDQPVAQGVPLVVGVPLLWRRPVDYFFWLTDESGLEMDPMRQQDL 89
           C W+MD +T   D  + + + L       W+   D FF   DE  +E+ P  +Q L
Sbjct: 204 CKWTMDAWTQWKDSQIKEWITLD------WKYEEDTFFSKIDELTVEVLPAEEQRL 253


  Database: nr
    Posted date:  Feb 20, 2000 12:20 AM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.326    0.143    0.478 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31655581
Number of Sequences: 457798
Number of extensions: 1261167
Number of successful extensions: 2501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2501
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 140,871,481
effective HSP length: 43
effective length of query: 62
effective length of database: 121,186,167
effective search space: 7513542354
effective search space used: 7513542354
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 65 (29.7 bits)