BLASTP 2.0.10 [Aug-26-1999]
Query= XF-11A04-GL62
(368 letters)
Database: nr
457,798 sequences; 140,871,481 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1707644|emb|CAA67866| (X99514) mexE [Pseudomonas aeruginosa] 96 6e-19
gi|2983278 (AE000702) acriflavin resistance protein AcrE [Aquif... 94 2e-18
gi|6912014|emb|CAB72258.1| (Y19106) periplasmic linker protein ... 79 5e-14
gi|1399757 (U57969) membrane fusion protein MexC [Pseudomonas a... 78 1e-13
gi|6502951|gb|AAF14522.1|AF147719_2 (AF147719) putative membran... 76 4e-13
gi|2983757 (AE000735) cation efflux system (czcB-like) [Aquifex... 75 7e-13
gi|3347916 (AF072887) putative membrane fusion protein AmrA [Bu... 74 2e-12
gi|1788389 (AE000297) putative membrane protein [Escherichia coli] 72 6e-12
gi|3219976|sp|P76397|YEGM_ECOLI HYPOTHETICAL 44.5 KD PROTEIN IN... 72 6e-12
gi|5764624|gb|AAD51344.1|AF173226_1 (AF173226) SmeA [Stenotroph... 72 6e-12
gi|1736780|dbj|BAA15928| (D90845) Membrane fusion protein MtrC ... 72 6e-12
gi|1709008|sp|P52477|MEXA_PSEAE MULTIDRUG RESISTANCE PROTEIN ME... 71 1e-11
gi|2961294|emb|CAA12354.1| (AJ225023) RagD [Bradyrhizobium japo... 71 1e-11
gi|399000|sp|P31223|ACRA_ECOLI ACRIFLAVIN RESISTANCE PROTEIN A ... 71 1e-11
gi|2605916|gb|AAD12178| (AF029405) periplasmic linker protein [... 70 3e-11
gi|5091480|gb|AAD39553.1| (AF031417) TtgA [Pseudomonas putida] 69 4e-11
gi|1171060|sp|P43505|MTRC_NEIGO MEMBRANE FUSION PROTEIN MTRC PR... 69 6e-11
gi|541019|pir||S40252 MtrC protein - Neisseria gonorrhoeae >gi|... 69 7e-11
gi|1787104 (AE000189) putative membrane protein [Escherichia coli] 69 7e-11
gi|6226416|sp|P75830|YBJY_ECOLI HYPOTHETICAL 41.7 KD PROTEIN IN... 69 7e-11
gi|3868983|dbj|BAA34299| (AB015853) MexX [Pseudomonas aeruginosa] 69 7e-11
gi|6968073|emb|CAB75242.1| (AL139075) putative periplasmic prot... 66 5e-10
gi|2494627|sp|Q57500|Y894_HAEIN HYPOTHETICAL PROTEIN HI0894 >gi... 64 2e-09
gi|1075004|pir||G64100 membrane fusion protein (mtrC) homolog -... 64 2e-09
gi|399428|sp|P24180|ACRE_ECOLI ACRIFLAVIN RESISTANCE PROTEIN E ... 62 7e-09
gi|586677|sp|P37636|YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN... 62 1e-08
gi|6967841|emb|CAB74203.1| (AL139075) putative membrane fusion ... 60 4e-08
gi|3769483 (AF073776) MexG [Pseudomonas aeruginosa] 59 5e-08
gi|586667|sp|P37626|YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN ... 59 6e-08
gi|1176207|sp|P46482|YHCQ_ECOLI HYPOTHETICAL 34.8 KD PROTEIN IN... 55 9e-07
gi|5081697|gb|AAD39494.1|AF145798_1 (AF145798) immunoreactive 3... 54 2e-06
gi|1787013 (AE000181) putative membrane protein [Escherichia co... 52 6e-06
gi|95799|pir||S18536 envelope protein - Escherichia coli >gi|22... 52 6e-06
gi|418560|sp|P32716|YJCR_ECOLI HYPOTHETICAL 36.9 KD PROTEIN IN ... 52 8e-06
gi|1001690|dbj|BAA10427| (D64002) hypothetical protein [Synecho... 52 8e-06
gi|3914125|sp|Q44585|NCCB_ALCXX NICKEL-COBALT-CADMIUM RESISTANC... 50 4e-05
gi|1742709|dbj|BAA15404| (D90807) Fusaric acid resistance prote... 50 4e-05
gi|3183279|sp|P76185|YDHJ_ECOLI HYPOTHETICAL 33.0 KD PROTEIN IN... 50 4e-05
gi|584963|sp|P37973|CNRB_ALCEU NICKEL AND COBALT RESISTANCE PRO... 48 9e-05
gi|2982989 (AE000682) putative protein [Aquifex aeolicus] 46 4e-04
gi|2109270 (U97042) CeoA [Burkholderia cepacia] 46 6e-04
gi|3378278 (AF079317) putative aromatic efflux pump membrane pr... 46 6e-04
gi|3860901|emb|CAA14801| (AJ235271) unknown [Rickettsia prowaze... 46 6e-04
gi|1651721|dbj|BAA16649| (D90899) hypothetical protein [Synecho... 45 8e-04
gi|2983499 (AE000717) putative protein [Aquifex aeolicus] 45 0.001
gi|1653814|dbj|BAA18725| (D90916) hypothetical protein [Synecho... 43 0.003
gi|2983555 (AE000721) putative protein [Aquifex aeolicus] 43 0.003
gi|6458444|gb|AAF10314.1|AE001929_7 (AE001929) conserved hypoth... 42 0.007
gi|3248942 (AF064947) unknown [Coxiella burnetii] 42 0.007
gi|3414725 (AF047693) multidrug resistance efflux pump homolog ... 41 0.016
gi|1653651|dbj|BAA18563| (D90915) hypothetical protein [Synecho... 39 0.046
gi|4155990 (AE001560) putative [Helicobacter pylori J99] 39 0.046
gi|1652466|dbj|BAA17388| (D90905) hypothetical protein [Synecho... 39 0.079
gi|5852499|gb|AAD54073.1| (AF132909) efflux pump protein FarA [... 38 0.10
gi|120622|sp|P24130|FUSE_BURCE FUSARIC ACID RESISTANCE PROTEIN ... 38 0.14
gi|1840154|gb|AAB81283.1| (U86610) 36 kDa protein [Helicobacter... 37 0.23
gi|2498107|sp|P94851|AN36_HELPY 36 KD ANTIGEN >gi|2314660|gb|AA... 37 0.23
gi|2822198 (U96166) ATP-binding cassette transporter-like prote... 37 0.30
gi|3798624 (AF082100) FK506 polyketide synthase [Streptomyces s... 36 0.40
gi|1314576 (U51197) unknown [Sphingomonas S88] 36 0.52
gi|6468250|emb|CAB61548.1| (AL133171) putative ABC transporter ... 36 0.52
gi|2239176|emb|CAA72331| (Y11592) melanogenic peroxidase [Sepia... 36 0.68
gi|6459396|gb|AAF11189.1|AE002006_2 (AE002006) c-di-GMP phospho... 36 0.68
gi|586725|sp|P37683|YIAV_ECOLI HYPOTHETICAL 41.8 KD PROTEIN IN ... 36 0.68
gi|321804|pir||JC1344 multidrug resistant protein emrA - Escher... 36 0.68
gi|543652|pir||PN0667 peroxidase-like protein (clone pL07) - sq... 35 0.89
gi|2506508|sp|P27303|EMRA_ECOLI MULTIDRUG RESISTANCE PROTEIN A ... 35 0.89
gi|3249003 (AF067776) extracellular matrix binding protein [Abi... 35 0.89
gi|128505|sp|P25196|NOLF_RHIME NODULATION PROTEIN NOLF >gi|9521... 35 1.2
gi|6460726|gb|AAF12431.1|AE001863_56 (AE001863) methyl-acceptin... 35 1.2
gi|4206629 (AF067954) putative membrane fusion protein SilB [Sa... 34 1.5
gi|6460727|gb|AAF12432.1|AE001863_57 (AE001863) methyl-acceptin... 34 2.0
gi|6714655|emb|CAB66177.1| (AL136500) putative TetR-family tran... 34 2.0
gi|117798|sp|P11091|CYAD_BORPE CYAD PROTEIN >gi|69562|pir||BVBR... 34 2.6
gi|100855|pir||S11860 b-32 protein - maize >gi|22190|emb|CAA497... 34 2.6
gi|6136182|sp|O64204|VG11_BPMD2 GENE 11 PROTEIN (GP11) >gi|3172... 34 2.6
gi|6562784|emb|CAB62715.1| (AL133423) putative secreted protein... 34 2.6
gi|1170699|sp|P30614|KPYK_YARLI PYRUVATE KINASE >gi|424047 (M86... 33 3.5
gi|132584|sp|P25891|RIP3_MAIZE RIBOSOME-INACTIVATING PROTEIN 3 ... 33 3.5
gi|132600|sp|P28522|RIPX_MAIZE RIBOSOME-INACTIVATING PROTEIN PR... 33 3.5
gi|101735|pir||JC1267 pyruvate kinase (EC 2.7.1.40) - yeast (Ya... 33 3.5
gi|4115626|dbj|BAA36464.1| (AB015053) Membrane fusion protein (... 33 3.5
gi|135978|sp|P19934|TOLA_ECOLI TOLA PROTEIN >gi|78890|pir||JV00... 33 4.5
gi|1169365|sp|P46388|DNAA_MYCLE CHROMOSOMAL REPLICATION INITIAT... 33 4.5
gi|1262352|emb|CAA94708| (Z70722) DnaA [Mycobacterium leprae] 33 4.5
gi|2688026 (AE001125) membrane fusion protein (mtrC) [Borrelia ... 33 4.5
gi|4958991|gb|AAD34204.1|AF068743_3 (AF068743) lipoate acetyl-t... 33 4.5
gi|6458125|gb|AAF10021.1|AE001903_9 (AE001903) pyrimidine-nucle... 33 4.5
gi|6900373|emb|CAB71985.1| (AJ391256) hypothetical protein [Nei... 33 4.5
gi|1781106|emb|CAB06216| (Z83864) hypothetical protein Rv3850 [... 32 5.9
gi|6689246|emb|CAB65411.1| (AJ243529) M-like protein [Streptoco... 32 5.9
gi|4501841|ref|NP_001596.1|| alanyl-tRNA synthetase >gi|1351144... 32 7.8
gi|1731058|sp|P54527|YQIK_BACSU HYPOTHETICAL 27.0 KD PROTEIN IN... 32 7.8
gi|3122010|sp|P94317|DNAK_BRAJA DNAK PROTEIN (HEAT SHOCK PROTEI... 32 7.8
gi|2983606 (AE000725) cation efflux system (czcB-like) [Aquifex... 32 7.8
gi|4972055|emb|CAB43923.1| (AL078470) putative protein [Arabido... 32 7.8
>gi|1707644|emb|CAA67866| (X99514) mexE [Pseudomonas aeruginosa]
Length = 414
Score = 95.6 bits (234), Expect = 6e-19
Identities = 101/358 (28%), Positives = 153/358 (42%), Gaps = 23/358 (6%)
Query: 16 LALTACGNNHAPDPRTEAPLVRVVAV-QGAFATSRSFTGVVAARVQSDLGFRVSGKVLKR 74
L L+ACG AP V V V + FTG + A +L RVSG + +
Sbjct: 19 LVLSACGKAPETTQGMAAPKVSVAEVIEQPLNEWDEFTGRLEAPESVELRPRVSGYIDRV 78
Query: 75 FVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVS 134
G +VK+G L IDP + + E + ARA ++VN+ +R L A +S
Sbjct: 79 AFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAIS 138
Query: 135 TSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQ 194
D AA A A + A +AQ D AR LS+ + A DG V G +V++G+
Sbjct: 139 AELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSGE 198
Query: 195 ----PVVRLAR------TGEREAIVYLP-------ETLRPAIGSLGQATLYGNPQAAVSA 237
P+V + ER + Y+ +T + LG ++ GNP
Sbjct: 199 TCSPPLVSTDKVYAYFDADERVFLKYVELARQAGRDTRSESPVYLGLSSEDGNPHL---G 255
Query: 238 RLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPG 297
RL L N + T T R V + A G V++++ S ++L D G
Sbjct: 256 RLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLG 315
Query: 298 KGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVRP 355
K V V+DG K V+R++++ + + V+ L GD++V G +R G V P
Sbjct: 316 K-KFVLVLDG-DNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQVDP 371
>gi|2983278 (AE000702) acriflavin resistance protein AcrE [Aquifex
aeolicus]
Length = 374
Score = 93.6 bits (229), Expect = 2e-18
Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 27/346 (7%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSR---SFTGVVAARVQSDLGFRVSGKVLKRFVDTGQI 81
HA + + E V + V+ + G + A ++++ RV G V+ V G
Sbjct: 31 HAEEVKRETKTVSGLVVEPVKVVKEVPVEYPGTIVAGDRAEISTRVMGYVVDVKVKEGDF 90
Query: 82 VKRGQPLMSIDPIDLGLQAQAQEETVA-------AARARAKQAVNDERRYRDLVAKGVVS 134
VK+GQ L IDP D+ Q ++ +A AA+A + R++ L+ +G ++
Sbjct: 91 VKKGQTLFVIDPRDVKAQINIMKQRIAQAQKNYEAAKAHYEAVKKTYERFKKLLKEGAIT 150
Query: 135 TSAYDQIKAAADSALAQLKAAEAQADVARNT-------LSYAILLADADGVVVETLAEPG 187
+DQ++A +A A+L+AA+A+ VAR LSYA + A DG V++ + + G
Sbjct: 151 QHEFDQVEAQYLAAKAKLQAAKAEIRVAREAYNSAKAQLSYAEVKAPFDGYVIQKMVDRG 210
Query: 188 QVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAV-SARLRVLSNAA 246
+ + G P+ L T + V PE I +Y V A++ + A
Sbjct: 211 DIANPGMPLAVL-ETRPYKVEVSFPEKYFGEINIGDTLEVYVEKLGRVFPAKVVEVEPAV 269
Query: 247 DRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVI- 305
D V+RT++ + +++ + G VKV + E + L +P A++ GVWV+
Sbjct: 270 DPVSRTFKVKALIDDN--NVKSGLFVKVFKLEKIEEPTVL-IPEKAIYKRWDFTGVWVVK 326
Query: 306 -DGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREG 350
DG + R + LG + +V L G+++V G EG
Sbjct: 327 PDGTLQLRLIRLGRKLG---NYYEVLAGLSPGERIVVEGIERACEG 369
>gi|6912014|emb|CAB72258.1| (Y19106) periplasmic linker protein
[Pseudomonas putida]
Length = 382
Score = 79.2 bits (192), Expect = 5e-14
Identities = 97/376 (25%), Positives = 156/376 (40%), Gaps = 57/376 (15%)
Query: 13 LLPLA----LTACGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRV 67
L+PLA L CG + P V V V+ A + G +A S++ +
Sbjct: 12 LIPLAAIWLLVGCGKQETVESTAVPPEVGVYTVKAQALTLTTDLPGRTSAYRVSEVRPQA 71
Query: 68 SGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDL 127
SG + KR G VK+G+ L IDP + E +A A A A N RRY L
Sbjct: 72 SGILQKRMFVEGAEVKQGEQLYQIDP-------RTYEALLARAEASLLTAQNLARRYERL 124
Query: 128 VAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPG 187
+ +S Y D A+A K A+A+A +AR + Y +LA G + + G
Sbjct: 125 LDTNAISQQQY-------DDAMATWKQAQAEAQMARINMQYTKVLAPITGRIGRSAVTEG 177
Query: 188 QVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAAD 247
+V+ GQ LA + + I + +P L G +A S RL+ + +
Sbjct: 178 ALVTNGQ-AQELATVTQLDPIYV--DVNQPI------TRLLGLKRALESGRLQRVGDNQA 228
Query: 248 RVTRTYE--ARYVLEGALLHAPL-------GATVKVEIP----------------DSTES 282
+V+ T + Y L+G L + + T++ E P + E
Sbjct: 229 QVSLTLDDGTPYPLKGVLKFSEVSVAPSTGSVTLRAEFPNPDHKLLPGMFVHALLNEGEQ 288
Query: 283 ISSLQVPIGALFDPGKG-PGVWVIDGKPAKAV-WRSIKVLGLTDDVAQVKGNLKVGDQVV 340
+++ VP A+ +G P VWV+ KP V R ++ L + + + G++V+
Sbjct: 289 QAAILVPHQAVGRDARGVPTVWVV--KPDNTVESREVQTLQTVGNAWLLGAGINDGERVI 346
Query: 341 SLGAHLLREGEIVRPI 356
+ G L R G V+P+
Sbjct: 347 TEGVQLARSGIKVKPV 362
>gi|1399757 (U57969) membrane fusion protein MexC [Pseudomonas
aeruginosa]
Length = 387
Score = 78.0 bits (189), Expect = 1e-13
Identities = 95/372 (25%), Positives = 154/372 (40%), Gaps = 27/372 (7%)
Query: 10 RIYLLPLALTACGNNHAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQ----SDLGF 65
RI L +A+ G A + + A +V V V A + + + R++ +++
Sbjct: 9 RIGALAMAIALAGCGPAEERQEAAEMVLPVEVLTVQAEPLALSSELPGRIEPVRVAEVRA 68
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYR 125
RV+G V+++ + G VK G L IDP L E +A RA +A RRY
Sbjct: 69 RVAGIVVRKRFEEGADVKAGDLLFQIDPAPLKAAVSRAEGELARNRAVLFEAQARVRRYE 128
Query: 126 DLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAE 185
LV VS +D A SA A ++A+A + AR L YA + A G + L
Sbjct: 129 PLVKIQAVSQQDFDTATADLRSAEAATRSAQADLETARLNLGYASVTAPISGRIGRALVT 188
Query: 186 PGQVVSAGQPVVRLARTGEREAI-VYLPETLRPAI---GSLGQATLYGNPQAAVSAR--- 238
G +V G+ + +AR + + I +T A+ +L + TL A++ R
Sbjct: 189 EGALVGQGEATL-MARIQQLDPIYADFTQTAAEALRLRDALKKGTLAAGDSQALTLRVEG 247
Query: 239 --------LRVLSNAADRVTRTYEARYVL---EGALLHAPLGATVKVEIPDSTESISSLQ 287
L+ A DR T R +G LL G V+V P ++ ++
Sbjct: 248 TPYERQGALQFADVAVDRGTGQIALRGKFANPDGVLLP---GMYVRVRTPQGIDN-QAIL 303
Query: 288 VPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 347
VP A+ G ++ G +A RS+ + Q+ L+ GD+V+ G +
Sbjct: 304 VPQRAVHRSSDGSAQVMVVGADERAESRSVGTGVMQGSRWQITEGLEPGDRVIVGGLAAV 363
Query: 348 REGEIVRPIGQG 359
+ G + P G
Sbjct: 364 QPGVKIVPKPDG 375
>gi|6502951|gb|AAF14522.1|AF147719_2 (AF147719) putative membrane
fusion protein; AmrA [Pseudomonas aeruginosa]
Length = 396
Score = 76.1 bits (184), Expect = 4e-13
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 2/185 (1%)
Query: 13 LLPLALTACGNNHAPDPRTEAP--LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGK 70
L+ L L C EAP + +VA + G + A Q+++ RV+G
Sbjct: 16 LVALFLLGCEEAADAGKTAEAPAEVGVIVARPAPIGITSELPGRLEAYRQAEVRARVAGI 75
Query: 71 VLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAK 130
V +R + GQ V+ G L IDP L +A A A A + +RY DL+
Sbjct: 76 VTRRLYEEGQDVRAGTVLFQIDPAPLKAALDISRGALARAEASHAAAADKLKRYADLIKD 135
Query: 131 GVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVV 190
+S Y + + A ALAQ+ +A+A+ + AR L YA + A DG L G +V
Sbjct: 136 RAISEREYTEAQTDARQALAQIASAKAELEQARLRLGYATVTAPIDGRARRALVTEGALV 195
Query: 191 SAGQP 195
P
Sbjct: 196 GEDSP 200
>gi|2983757 (AE000735) cation efflux system (czcB-like) [Aquifex
aeolicus]
Length = 348
Score = 75.3 bits (182), Expect = 7e-13
Identities = 76/350 (21%), Positives = 146/350 (41%), Gaps = 13/350 (3%)
Query: 5 QLASYRIYLLPLALTACGNNHAPDPRTEAPLVRVVAVQGA-FATSRSFTGVVAARVQSDL 63
Q Y ++LL L + P+ V VV V+ S F GV+ A +++L
Sbjct: 2 QTLLYILFLLFL-FSCSKTEEKKTPQARKIQVSVVEVKREKVVVSVPFKGVLKAVKEAEL 60
Query: 64 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERR 123
+ G + + + G+ VK+G+ L ++ L ++ + + + KQ ++
Sbjct: 61 SSQEPGVLTRLYKREGEYVKKGEVLAQVES---NLAKESYRKVLNQLKEVEKQVELQKKI 117
Query: 124 Y---RDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVV 180
Y + L + ++S Y++ K + + + KA E++ + + + A DG +
Sbjct: 118 YERRKKLFERELISKEEYEREKYKLEELIQRKKALESELKYFKEKVRRHYVRAPFDGYIT 177
Query: 181 ETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLR 240
E G V+ PV RL GE E +P + + + V R+
Sbjct: 178 ERYKNMGDYVTPQTPVFRLINLGELEFSFKVPARYVSLLKKGKELNVELENGKNVKGRVY 237
Query: 241 VLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGP 300
+S D + + ++ G E+P + + +VP A+ G
Sbjct: 238 FISERGDE-NNQFLVKLLINNEEGKLKAGTFGFAEVP--VREVYAFKVPEDAVILQGNKK 294
Query: 301 GVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREG 350
+WV++G ++ R ++V+ + A V+G+LK GD+VV+ LL+EG
Sbjct: 295 IIWVLEGNRVRS--REVEVIFINGGYAYVEGDLKDGDKVVTENTFLLKEG 342
>gi|3347916 (AF072887) putative membrane fusion protein AmrA
[Burkholderia pseudomallei]
Length = 399
Score = 73.7 bits (178), Expect = 2e-12
Identities = 99/371 (26%), Positives = 149/371 (39%), Gaps = 44/371 (11%)
Query: 21 CGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTG 79
CG + + VV V+ + S G + A Q+++ RV+G V R + G
Sbjct: 25 CGKHESEHDAAAPREASVVTVKKTSVPLSVELPGRLDAYRQAEVRARVAGIVTARTYEEG 84
Query: 80 QIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYD 139
Q VKRG L IDP A + A+A A++ RRY +LV VS D
Sbjct: 85 QEVKRGAVLFRIDPAPFKAARDAAAGALEKAQAAHLAALDKRRRYDELVRDRAVSER--D 142
Query: 140 QIKAAADSALAQLKAAEAQADVARN--TLSYAILLADADGVVVETLAEPGQVVSAGQPVV 197
+A AD A+ A A+A++AR L YA + A DG L G +V GQ
Sbjct: 143 HTEALADERQAKAAVASARAELARAQLQLDYATVTAPIDGRARRALVTEGALV--GQDQA 200
Query: 198 RLARTGEREAIVYL--------PETLRPAIGSLGQATLYGNPQAAVS------------A 237
T E+ +Y+ E+LR A+ S G+A V+
Sbjct: 201 TPLTTVEQLDPIYVNFSQPAADVESLRRAVKS-GRAAGIAQQDVEVTLVRPDGSTYARKG 259
Query: 238 RLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPG 297
+L A D T T R + GA V++ + D + ++ VP AL
Sbjct: 260 KLLFADLAVDPSTDTVAMRALFPNPERELLPGAYVRIAL-DRAVARDAILVPRDAL---- 314
Query: 298 KGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKG-------NLKVGDQVVSLGAHLLREG 350
+ D K V ++ K+ +T + AQ+KG L G++VV + A G
Sbjct: 315 ----LRTADSATVKVVGQNGKIRDVTVEAAQMKGRDWIVTRGLAGGERVVVVDAAQFEAG 370
Query: 351 EIVRPIGQGEA 361
V+ + +G A
Sbjct: 371 TTVKALERGAA 381
>gi|1788389 (AE000297) putative membrane protein [Escherichia coli]
Length = 464
Score = 72.2 bits (174), Expect = 6e-12
Identities = 84/340 (24%), Positives = 137/340 (39%), Gaps = 24/340 (7%)
Query: 33 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 92
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 109 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 168
Query: 93 PIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQL 152
P + + +A +A A D RY+ L +VS D +A +
Sbjct: 169 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 228
Query: 153 KAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 210
KA EA A+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 229 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 288
Query: 211 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 257
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 289 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 345
Query: 258 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 317
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 346 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 400
Query: 318 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 356
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 401 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 440
>gi|3219976|sp|P76397|YEGM_ECOLI HYPOTHETICAL 44.5 KD PROTEIN IN
ALKA-BAES INTERGENIC REGION PRECURSOR
Length = 415
Score = 72.2 bits (174), Expect = 6e-12
Identities = 84/340 (24%), Positives = 137/340 (39%), Gaps = 24/340 (7%)
Query: 33 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 92
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 60 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 119
Query: 93 PIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQL 152
P + + +A +A A D RY+ L +VS D +A +
Sbjct: 120 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 179
Query: 153 KAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 210
KA EA A+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 180 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 239
Query: 211 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 257
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 240 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 296
Query: 258 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 317
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 297 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 351
Query: 318 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 356
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 352 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 391
>gi|5764624|gb|AAD51344.1|AF173226_1 (AF173226) SmeA
[Stenotrophomonas maltophilia]
Length = 398
Score = 72.2 bits (174), Expect = 6e-12
Identities = 101/384 (26%), Positives = 154/384 (39%), Gaps = 40/384 (10%)
Query: 8 SYRIYLLPL--ALTACGNNHAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQ----S 61
S R LLPL AL AC + RT+AP + V V A A + + R S
Sbjct: 10 SPRPLLLPLLLALAACSAD-----RTDAPAMPEVGVIIASAQPLALQQTLPGRAVPFEIS 64
Query: 62 DLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDE 121
++ ++ G + +R GQ VK GQ L +DP +A A A A
Sbjct: 65 EVRPQIGGLIRQRLFTEGQQVKAGQLLYQVDPAPYQAAFDTARGQLAQAEATVLSAQPKA 124
Query: 122 RRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVE 181
R R LV+ S D +A A A + AA A AR L Y + A DG +
Sbjct: 125 ERTRALVSMDAASKQDADDATSALKQAQANVIAARAALQAARINLDYTRVTAPIDGRIGT 184
Query: 182 TLAEPGQVVSAGQPVVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQA 233
+ G +V+AGQ T +R VYL T LR + + + G Q
Sbjct: 185 SSVTAGALVAAGQDTA--LTTIQRLDPVYLDVTQSSTQMLALRKRLDAGLVKAIDGKAQV 242
Query: 234 AV----------SARLRVLSNAADRVTRTYEARYVL---EGALLHAPLGATVKVEIPDST 280
V L + +A D T + R V+ +G LL G +K +P +T
Sbjct: 243 KVLLEDGSTYAHEGTLEFVGSAVDPGTGNVKLRAVIPNPDGLLLP---GMYLKAVLPMAT 299
Query: 281 ESISSLQVPIGALFDPGKG-PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQV 339
++ +L VP A+ +G P + ++D K V R + + + Q+ LK G++V
Sbjct: 300 DA-RALLVPQKAVVRNERGEPLLRLLDAKD-HVVERRVSTGQVVGNQWQITSGLKAGERV 357
Query: 340 VSLGAHLLREGEIVRPIGQGEAMV 363
+ + G+ V+ + A +
Sbjct: 358 IVSNGSAVSLGQQVKAVAPTTAQL 381
>gi|1736780|dbj|BAA15928| (D90845) Membrane fusion protein MtrC
precursor. [Escherichia coli]
Length = 455
Score = 72.2 bits (174), Expect = 6e-12
Identities = 84/340 (24%), Positives = 137/340 (39%), Gaps = 24/340 (7%)
Query: 33 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID 92
AP+ AV+ A + G + A + RV G+++ GQ VK G L ID
Sbjct: 100 APVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEID 159
Query: 93 PIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQL 152
P + + +A +A A D RY+ L +VS D +A +
Sbjct: 160 PSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTI 219
Query: 153 KAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQP--VVRLARTGEREAIVY 210
KA EA A+ L ++ + A DG V + G +S+G +V + +T + +
Sbjct: 220 KADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFT 279
Query: 211 LPETLRPAIGSLGQATLYGNP-----------QAAVSARLRVLSNAADRVTRT--YEARY 257
LPE+ I ++ QA G P + L L N D T T +AR+
Sbjct: 280 LPES---DIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARF 336
Query: 258 VLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSI 317
+ L V + TE +++ +P AL +G VWV++ + V + +
Sbjct: 337 NNQDDALFP--NQFVNARMLVDTEQ-NAVVIPTAALQMGNEGHFVWVLNSE--NKVSKHL 391
Query: 318 KVLGLTD-DVAQVKGNLKVGDQVVSLGAHLLREGEIVRPI 356
G+ D ++ + GD+VV+ G L EG V +
Sbjct: 392 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVV 431
>gi|1709008|sp|P52477|MEXA_PSEAE MULTIDRUG RESISTANCE PROTEIN MEXA
PRECURSOR >gi|481839|pir||S39629 hypothetical protein A
- Pseudomonas aeruginosa >gi|438853 (L11616) envC
homologue; ORFA [Pseudomonas aeruginosa]
Length = 383
Score = 71.4 bits (172), Expect = 1e-11
Identities = 96/369 (26%), Positives = 149/369 (40%), Gaps = 56/369 (15%)
Query: 17 ALTACGNNHAPDPRTEAPLVRVVAVQGAFAT-SRSFTGVVAARVQSDLGFRVSGKVLKRF 75
AL+ CG + AP P + P V +V ++ T + G A +++ +V+G +LKR
Sbjct: 20 ALSGCGKSEAPPP-AQTPEVGIVTLEAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRL 78
Query: 76 VDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVST 135
G VK GQ L IDP Q+ + +A+ + +A +RY+ LVA VS
Sbjct: 79 FKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQA-------QRYKLLVADQAVSK 131
Query: 136 SAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQP 195
Y A A++A Q KAA Q AR L Y +L+ G + + G +V+ GQ
Sbjct: 132 QQY----ADANAAYLQSKAAVEQ---ARINLRYTKVLSPISGRIGRSAVTEGALVTNGQ- 183
Query: 196 VVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQAAVS----------- 236
T ++ +Y+ T LR + S GQ G+ A VS
Sbjct: 184 -ANAMATVQQLDPIYVDVTQPSTALLRLRRELAS-GQLERAGDNAAKVSLKLEDGSQYPL 241
Query: 237 -ARLRVLSNAADRVTRTYEARYV--------LEGALLHAPLGATVKVEIPDSTESISSLQ 287
RL + D T + R V L G +HA L VK + ++
Sbjct: 242 EGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQLQEGVKQK---------AIL 292
Query: 288 VPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 347
P + KG ++ K R IK + D V L GD++++ G +
Sbjct: 293 APQQGVTRDLKGQATALVVNAQNKVELRVIKADRVIGDKWLVTEGLNAGDKIITEGLQFV 352
Query: 348 REGEIVRPI 356
+ G V+ +
Sbjct: 353 QPGVEVKTV 361
>gi|2961294|emb|CAA12354.1| (AJ225023) RagD [Bradyrhizobium
japonicum]
Length = 423
Score = 71.0 bits (171), Expect = 1e-11
Identities = 92/349 (26%), Positives = 147/349 (41%), Gaps = 27/349 (7%)
Query: 26 APDPRTEAPLVRVVAVQGAFATSR-SFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
A RT P VRV VQ + + + A +++ R SG + KR+VD G VK+
Sbjct: 73 AEQVRTNVPEVRVATVQASGDLMKVTLPATTTAFEAANIFARTSGYIEKRYVDIGDRVKK 132
Query: 85 GQPLMSIDPIDLGLQ-AQAQ----EETVAAARARAKQAVNDERRYRD--LVAKGVVSTSA 137
G L+ I +L Q AQAQ ++ A +A+A + + D RD LV +G ++
Sbjct: 133 GDLLVEITAPELDQQIAQAQATLAQDQAALQQAQASRELADVTNSRDSNLVKQGWLTAQQ 192
Query: 138 YDQIK-------AAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVV 190
D + A A + + A EAQ V + SY ++A DGVV + + G +V
Sbjct: 193 GDNDRLTLRAQQGAVGVAQSNIAAQEAQIRVLQQEKSYQRVVAPFDGVVTQRNVDNGSLV 252
Query: 191 SAGQP-VVRLARTGEREAIVYLPET----LRPAIGS-LGQATLYGNPQAAVSARLRVLSN 244
AG + + + V++P+ + P + S + + G A R+
Sbjct: 253 QAGSTFMFTMMHSNVIRTQVFVPQDEAFGVAPGVDSDIRVPEIPGRTFAGKVTRIATALQ 312
Query: 245 AADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWV 304
R T E LL + TV++ IP T S + +P AL G V V
Sbjct: 313 PGSRTLLT-EIDVPNPDGLLSPGIYCTVELSIPRRTPSTT---IPSDALVFDQNGLHVAV 368
Query: 305 IDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIV 353
+ + ++ + + +V+ ++ GDQVV A L EG V
Sbjct: 369 V--RNGTVHFQQVSISRDFGTTVEVRDGVQPGDQVVLNPAVNLAEGSKV 415
>gi|399000|sp|P31223|ACRA_ECOLI ACRIFLAVIN RESISTANCE PROTEIN A
PRECURSOR >gi|625730|pir||A36938 lipoprotein acrA
precursor - Escherichia coli >gi|290405 (M94248)
acriflavine resistance protein [Escherichia coli]
>gi|532310 (U00734) 42 kDa protein [Escherichia coli]
>gi|1773145 (U82664) lipoprotein AcrA precursor
[Escherichia coli] >gi|1786668 (AE000152) acridine
efflux pump [Escherichia coli]
Length = 397
Score = 71.0 bits (171), Expect = 1e-11
Identities = 90/361 (24%), Positives = 140/361 (37%), Gaps = 28/361 (7%)
Query: 16 LALTACGNNHAPDPRTEAPLVRVVAVQGA-FATSRSFTGVVAARVQSDLGFRVSGKVLKR 74
LALT C + A + P V VV V+ + G +A +++ +VSG +LKR
Sbjct: 20 LALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKR 79
Query: 75 FVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVS 134
G ++ G L IDP + + +A A+A A A RY+ L+ +S
Sbjct: 80 NFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYIS 139
Query: 135 TSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQ 194
YDQ A A A A + AA+A + AR L+Y + + G + ++ G +V GQ
Sbjct: 140 KQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQ 199
Query: 195 PVVRLARTGEREAIV---------YLPETLRPAIGSLGQATLYGNPQAAVS--------- 236
LA + + I +L A G+L Q N +A VS
Sbjct: 200 -ATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQE----NGKAKVSLITSDGIKF 254
Query: 237 ---ARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGAL 293
L D+ T + R + G V+ + + +++ VP +
Sbjct: 255 PQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNP-NAILVPQQGV 313
Query: 294 FDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIV 353
+G ++ G K R I D V LK GD+VV G +R G V
Sbjct: 314 TRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQV 373
Query: 354 R 354
+
Sbjct: 374 K 374
>gi|2605916|gb|AAD12178| (AF029405) periplasmic linker protein
[Pseudomonas putida]
Length = 382
Score = 70.2 bits (169), Expect = 3e-11
Identities = 95/385 (24%), Positives = 151/385 (38%), Gaps = 56/385 (14%)
Query: 4 RQLASYR-IYLLPLA----LTACGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAA 57
RQ+ S R + ++PL ++ CG T P V V V+ A + G +A
Sbjct: 2 RQIRSPRALRVIPLTALMLISGCGEKEQVSSATPPPDVGVYTVRAQALTLTTDLPGRTSA 61
Query: 58 RVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQA 117
+++ +VSG + KR G VK GQ L IDP + E + A A A
Sbjct: 62 FRVAEVRPQVSGILQKRSFVEGAEVKLGQQLYQIDP-------RTYEAQLRRAEANRTSA 114
Query: 118 VNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADG 177
N RRY L+ VS YD ALA K AEA VAR + Y +L+ G
Sbjct: 115 QNLARRYETLLKTKAVSKQQYDD-------ALAAWKQAEADYQVARIDVQYTRVLSPISG 167
Query: 178 VVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSA 237
+ + G +V+ GQ LA + + I + +P L G +A S
Sbjct: 168 RIGRSTVTEGALVTNGQ-AQSLATVTQLDPIYV--DVTQPI------TKLLGLQKALESG 218
Query: 238 RLRVLSNAADRVTRTYE--ARYVLEGALLHAPL-------GATVKVEIPDSTESI----- 283
RL+ V+ T + + Y L G L + + T++ E P+ +
Sbjct: 219 RLQKTGENQAEVSLTLDDGSAYPLPGTLKFSEVSVDPTTGSVTLRAEFPNPNRKLLPGMF 278
Query: 284 -----------SSLQVPIGALFDPGKG-PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKG 331
+++ VP A+ +G P VWV+ R I+ L + +
Sbjct: 279 VHALLKEGVQNAAILVPQQAISRDTRGVPSVWVVKADNT-VESREIQTLRTVGNAWLISN 337
Query: 332 NLKVGDQVVSLGAHLLREGEIVRPI 356
+ G+++++ G +R G V +
Sbjct: 338 GVTEGERIITEGVQRVRSGIAVNAV 362
>gi|5091480|gb|AAD39553.1| (AF031417) TtgA [Pseudomonas putida]
Length = 384
Score = 69.5 bits (167), Expect = 4e-11
Identities = 95/370 (25%), Positives = 144/370 (38%), Gaps = 56/370 (15%)
Query: 14 LPLALTACGNNHAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRVSGKVL 72
L L+ C A P +AP V VV +Q AF + G +A +++ +V+G +L
Sbjct: 16 LATLLSGCKKEEAA-PAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIIL 74
Query: 73 KRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGV 132
KR G VK GQ L IDP E T+A A+A + RY+ L+ +
Sbjct: 75 KRLFKEGSEVKEGQQLYQIDP-------AVYEATLANAKANLLATRSLAERYKQLIDEQA 127
Query: 133 VSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSA 192
VS YD A A A LK+A+ L Y +LA G + + G +VS
Sbjct: 128 VSKQEYDDANAKRLQAEASLKSAQID-------LRYTKVLAPISGRIGRSSFTEGALVSN 180
Query: 193 GQPVVRLARTGEREAIVYLPET--------LRPAIGSLGQATLYGNPQAAV--------- 235
GQ T ++ +Y+ T LR + S GQ GN A+V
Sbjct: 181 GQ--TDAMATIQQLDPIYVDVTQSTAELLKLRRDLES-GQLQKAGNNAASVQLVLEDGSL 237
Query: 236 ---SARLRVLSNAADRVTRTYEAR--------YVLEGALLHAPLGATVKVEIPDSTESIS 284
RL A D T + R +L G +HA L A V + +
Sbjct: 238 FKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGV---------NAN 288
Query: 285 SLQVPIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGA 344
++ P + KG ++ + K R +K ++ L GD++++ G
Sbjct: 289 AILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGL 348
Query: 345 HLLREGEIVR 354
+R G V+
Sbjct: 349 QYVRPGVEVK 358
>gi|1171060|sp|P43505|MTRC_NEIGO MEMBRANE FUSION PROTEIN MTRC
PRECURSOR >gi|550460 (U14993) membrane fusion protein
[Neisseria gonorrhoeae]
Length = 412
Score = 69.1 bits (166), Expect = 6e-11
Identities = 54/190 (28%), Positives = 84/190 (43%), Gaps = 8/190 (4%)
Query: 16 LALTACGNN-------HAPDPRTEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRV 67
LAL++CG AP+V VV V A + G + + +D+ +V
Sbjct: 20 LALSSCGKGGDAAQGGQPAGREAPAPVVGVVTVHPQTVALTVELPGRLESLRTADVRAQV 79
Query: 68 SGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDL 127
G + KR G V+ GQPL ID ++ +A A+A +A D RY+ L
Sbjct: 80 GGIIQKRLFQEGSYVRAGQPLYQIDSSTYEAGLESARAQLATAQATLAKADADLARYKPL 139
Query: 128 VAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPG 187
V+ +S YD A SA A +KAA+A A L+ + + A G + ++ G
Sbjct: 140 VSADAISKQEYDAAVTAKRSAEASVKAAQAAIKSAGINLNRSRITAPISGFIGQSKVSEG 199
Query: 188 QVVSAGQPVV 197
+++AG V
Sbjct: 200 TLLNAGDTTV 209
>gi|541019|pir||S40252 MtrC protein - Neisseria gonorrhoeae
>gi|438192|emb|CAA81046| (Z25796) MtrC protein
[Neisseria gonorrhoeae]
Length = 271
Score = 68.7 bits (165), Expect = 7e-11
Identities = 56/190 (29%), Positives = 86/190 (44%), Gaps = 8/190 (4%)
Query: 16 LALTACGNNH------APDPR-TEAPLVRVVAVQG-AFATSRSFTGVVAARVQSDLGFRV 67
LAL++CG P R AP+V VV V A + G + + +D+ +V
Sbjct: 20 LALSSCGKGRDAAQGGQPAGREAPAPVVGVVTVHPQTVALTVELPGRLESLRTADVRAQV 79
Query: 68 SGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDL 127
G + KR G V+ GQPL ID ++ +A A+A +A D RY+ L
Sbjct: 80 GGIIQKRLFQEGSYVRAGQPLYQIDSSTYEAGLESARAQLATAQATLAKADADLARYKPL 139
Query: 128 VAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPG 187
V+ +S YD A SA A +KAA+A A L+ + + A G + ++ G
Sbjct: 140 VSADAISKQEYDAAVTAKRSAEAGVKAAQAAIKSAGINLNRSRITAPISGFIGQSKVSEG 199
Query: 188 QVVSAGQPVV 197
+++AG V
Sbjct: 200 TLLNAGDTTV 209
>gi|1787104 (AE000189) putative membrane protein [Escherichia coli]
Length = 380
Score = 68.7 bits (165), Expect = 7e-11
Identities = 87/344 (25%), Positives = 142/344 (40%), Gaps = 40/344 (11%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
+AP P + +VR G S TG + A + D+G +VSG++ V G VK+
Sbjct: 39 NAPVPTYQTLIVR----PGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKK 94
Query: 85 GQPLMSIDPIDLGLQAQAQEETVAAARARAKQA--------VNDERRYRDLVAKGVVSTS 136
Q L IDP Q + E T+ RA+ +QA V R+ R K V S
Sbjct: 95 DQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAV---S 151
Query: 137 AYDQIKAAADSAL---------AQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPG 187
D AA + A+ AQ+K +A D A+ L Y ++A G V + G
Sbjct: 152 QQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQG 211
Query: 188 QVVSAGQPVVRLARTGEREAIVYLPET-------LRPAIGSLGQATLYGNPQAAVSARLR 240
Q V A Q + + A++ + L+P G T+ G+P +++
Sbjct: 212 QTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKP--GQKAWFTVLGDPLTRYEGQIK 269
Query: 241 VLSNAADRVTRT--YEARYVL--EGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDP 296
+ ++V Y AR+ + LL + A V +++ T+ + L +P+ AL DP
Sbjct: 270 DVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL---TDVKNVLTIPLSALGDP 326
Query: 297 GKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVV 340
V + + R + + D ++ L+ GD+VV
Sbjct: 327 VGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVV 370
>gi|6226416|sp|P75830|YBJY_ECOLI HYPOTHETICAL 41.7 KD PROTEIN IN
AQPZ-CSPD INTERGENIC REGION >gi|4062462|dbj|BAA35597|
(D90725) MtrC protein [Escherichia coli]
Length = 371
Score = 68.7 bits (165), Expect = 7e-11
Identities = 87/344 (25%), Positives = 142/344 (40%), Gaps = 40/344 (11%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
+AP P + +VR G S TG + A + D+G +VSG++ V G VK+
Sbjct: 30 NAPVPTYQTLIVR----PGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKK 85
Query: 85 GQPLMSIDPIDLGLQAQAQEETVAAARARAKQA--------VNDERRYRDLVAKGVVSTS 136
Q L IDP Q + E T+ RA+ +QA V R+ R K V S
Sbjct: 86 DQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAV---S 142
Query: 137 AYDQIKAAADSAL---------AQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPG 187
D AA + A+ AQ+K +A D A+ L Y ++A G V + G
Sbjct: 143 QQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQG 202
Query: 188 QVVSAGQPVVRLARTGEREAIVYLPET-------LRPAIGSLGQATLYGNPQAAVSARLR 240
Q V A Q + + A++ + L+P G T+ G+P +++
Sbjct: 203 QTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKP--GQKAWFTVLGDPLTRYEGQIK 260
Query: 241 VLSNAADRVTRT--YEARYVL--EGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDP 296
+ ++V Y AR+ + LL + A V +++ T+ + L +P+ AL DP
Sbjct: 261 DVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL---TDVKNVLTIPLSALGDP 317
Query: 297 GKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVV 340
V + + R + + D ++ L+ GD+VV
Sbjct: 318 VGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVV 361
>gi|3868983|dbj|BAA34299| (AB015853) MexX [Pseudomonas aeruginosa]
Length = 389
Score = 68.7 bits (165), Expect = 7e-11
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 3/185 (1%)
Query: 13 LLPLALTACGNNHAPDPRTEAP--LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGK 70
L+ L L C EAP + +VA + G + A Q+++ RV+G
Sbjct: 12 LVALFLLGCEEAADAGKTAEAPAEVGVIVARPAPIGITSELPGRLEAYRQAEVRARVAGI 71
Query: 71 VLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAK 130
V +R + GQ V+ G L IDP L + R + + A + + Y DL+
Sbjct: 72 VTRRLYEEGQDVRAGTVLFQIDPAPLKAALDISRGALPG-RGQPRAAADKLKAYADLIKD 130
Query: 131 GVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVV 190
+S Y + + A ALAQ+ +A+A+ + AR L YA + A DG L G +V
Sbjct: 131 RAISEREYTEAQTDARQALAQIASAKAELEQARLRLGYATVTAPIDGRARRALVTEGALV 190
Query: 191 SAGQP 195
P
Sbjct: 191 GEDSP 195
>gi|6968073|emb|CAB75242.1| (AL139075) putative periplasmic protein
[Campylobacter jejuni]
Length = 390
Score = 66.0 bits (158), Expect = 5e-10
Identities = 78/314 (24%), Positives = 135/314 (42%), Gaps = 44/314 (14%)
Query: 53 GVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID----PIDLGL------QAQA 102
G V A+ Q D+G +VSG+++K +VD G VK+G + ID DL + A+A
Sbjct: 50 GKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKAQLESAKA 109
Query: 103 QEETVAAARARAKQAVNDERRYRDLVAKGV----VSTSAYDQIKAAADSALAQLKAAEAQ 158
E+ A A + E++ A + + Y +KA AQ+ E
Sbjct: 110 NLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELNAQVVQLEIT 169
Query: 159 ADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQ---PVVRLARTGEREAIVYLPE-- 213
A+ L Y + A DGVV+ + GQ V+A Q +VR+A E E + + E
Sbjct: 170 LKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDEMEVRMEIAEAD 229
Query: 214 TLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTRT--------------------- 252
+ +G+ +L +PQ A++ + A V+ +
Sbjct: 230 VSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSSSSSSSSSSSNAIY 289
Query: 253 YEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVIDGKPAKA 312
Y A++ + +G +++ EI ++ + L VP A+ KG V +++ + KA
Sbjct: 290 YYAKFYVANKDDFLRIGMSIQNEIVVASAK-AVLAVPTYAIKSDPKGYYVEILENQ--KA 346
Query: 313 VWRSIKVLGLTDDV 326
V + +K LG+ D +
Sbjct: 347 VKKYVK-LGIKDSI 359
>gi|2494627|sp|Q57500|Y894_HAEIN HYPOTHETICAL PROTEIN HI0894
>gi|1573913 (U32771) lipoprotein, putative [Haemophilus
influenzae Rd]
Length = 382
Score = 63.6 bits (152), Expect = 2e-09
Identities = 82/362 (22%), Positives = 152/362 (41%), Gaps = 46/362 (12%)
Query: 29 PRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPL 88
P + +P+ + + + TG+V + L + +G V + V GQ VK+G+ L
Sbjct: 34 PESSSPVTALEVQPREWTPVINTTGLVRPNQGAMLSTQNAGAVSQVLVQNGQNVKKGEVL 93
Query: 89 MSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSA 148
+ +D + + + AA+A+ +RY L+ VS D KAA D+
Sbjct: 94 VELD-------SSVERANLQAAQAQLSALRQTYQRYVGLLNSNAVSRQEMDNAKAAYDAQ 146
Query: 149 LAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAI 208
+A +++ +A + + ++A DG GQ V+ G +VR+ T +
Sbjct: 147 VASIESLKAAIERRK-------IVAPFDGKAGIVKINVGQYVNVGTEIVRVEDTSSMKVD 199
Query: 209 VYLPET--LRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTRTYEARYVL---EGAL 263
L + + IG AT SAR+ + A + T + + +G
Sbjct: 200 FALSQNDLDKLHIGQRVTATTDARLGETFSARITAIEPAINSSTGLVDVQATFDPEDGHK 259
Query: 264 LHAPLGATVKVEIPDSTESISSLQV--------PIGALFDP------GKGPGVWVIDGKP 309
L + + + +++ +P T + QV I L +P GK G +D
Sbjct: 260 LLSGMFSRLRIALPTETNQVVVPQVAISYNMYGEIAYLLEPLSEEEKGKMSGNEKLD--- 316
Query: 310 AKAVWRSIKVLGLTDD----VAQVKGN-LKVGDQVVSLGAHLLREGEIVRPIGQGEAMVV 364
++R+ ++ T D AQ++GN +KVGD++++ G + G +V I + +V
Sbjct: 317 --RLYRAKQITVFTKDRQGVYAQLQGNEVKVGDKIITGGQQGIGNGSLVEWIKKD---IV 371
Query: 365 GA 366
GA
Sbjct: 372 GA 373
>gi|1075004|pir||G64100 membrane fusion protein (mtrC) homolog -
Haemophilus influenzae (strain Rd KW20)
Length = 414
Score = 63.6 bits (152), Expect = 2e-09
Identities = 82/362 (22%), Positives = 152/362 (41%), Gaps = 46/362 (12%)
Query: 29 PRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPL 88
P + +P+ + + + TG+V + L + +G V + V GQ VK+G+ L
Sbjct: 66 PESSSPVTALEVQPREWTPVINTTGLVRPNQGAMLSTQNAGAVSQVLVQNGQNVKKGEVL 125
Query: 89 MSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSA 148
+ +D + + + AA+A+ +RY L+ VS D KAA D+
Sbjct: 126 VELD-------SSVERANLQAAQAQLSALRQTYQRYVGLLNSNAVSRQEMDNAKAAYDAQ 178
Query: 149 LAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAI 208
+A +++ +A + + ++A DG GQ V+ G +VR+ T +
Sbjct: 179 VASIESLKAAIERRK-------IVAPFDGKAGIVKINVGQYVNVGTEIVRVEDTSSMKVD 231
Query: 209 VYLPET--LRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTRTYEARYVL---EGAL 263
L + + IG AT SAR+ + A + T + + +G
Sbjct: 232 FALSQNDLDKLHIGQRVTATTDARLGETFSARITAIEPAINSSTGLVDVQATFDPEDGHK 291
Query: 264 LHAPLGATVKVEIPDSTESISSLQV--------PIGALFDP------GKGPGVWVIDGKP 309
L + + + +++ +P T + QV I L +P GK G +D
Sbjct: 292 LLSGMFSRLRIALPTETNQVVVPQVAISYNMYGEIAYLLEPLSEEEKGKMSGNEKLD--- 348
Query: 310 AKAVWRSIKVLGLTDD----VAQVKGN-LKVGDQVVSLGAHLLREGEIVRPIGQGEAMVV 364
++R+ ++ T D AQ++GN +KVGD++++ G + G +V I + +V
Sbjct: 349 --RLYRAKQITVFTKDRQGVYAQLQGNEVKVGDKIITGGQQGIGNGSLVEWIKKD---IV 403
Query: 365 GA 366
GA
Sbjct: 404 GA 405
>gi|399428|sp|P24180|ACRE_ECOLI ACRIFLAVIN RESISTANCE PROTEIN E
PRECURSOR (ENVC PROTEIN) >gi|290408 (M96848) acriflavine
resistance protein [Escherichia coli]
>gi|510829|emb|CAA41016| (X57948) envelope protein
[Escherichia coli] >gi|606206|gb|AAA58069.1| (U18997)
alternate name envC [Escherichia coli] >gi|1789665
(AE000405) transmembrane protein affects septum
formation and cell membrane permeability [Escherichia
coli]
Length = 385
Score = 62.1 bits (148), Expect = 7e-09
Identities = 81/348 (23%), Positives = 135/348 (38%), Gaps = 25/348 (7%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
H +P+ +V+ ++ G A +++ +VSG VL R G V+
Sbjct: 33 HVGEPQVTVHIVKTAPLE----VKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQA 88
Query: 85 GQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAA 144
GQ L IDP + + +A + A A A +RY LV +S YDQ A
Sbjct: 89 GQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIAD 148
Query: 145 ADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGE 204
A A A + AA+A + AR L+Y + A G + ++ G +V+ GQ LA +
Sbjct: 149 ARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQ-TTELATVQQ 207
Query: 205 REAIVYLPET--------LRPAI--GSLGQATLYGNPQAA--------VSARLRVLSNAA 246
+ I Y+ T L+ ++ G+L + N + + L+
Sbjct: 208 LDPI-YVDVTQSSNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTV 266
Query: 247 DRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWVID 306
D T + R V G V+ I + + ++ +P + +G +I
Sbjct: 267 DESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQP-DAILIPQQGVSRTPRGDATVLIV 325
Query: 307 GKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVR 354
++ R + D + LK GDQV+ G R GE V+
Sbjct: 326 NDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVK 373
>gi|586677|sp|P37636|YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN IN
HDED-GADA INTERGENIC REGION PRECURSOR
>gi|1073514|pir||S47733 hypothetical protein o385 -
Escherichia coli >gi|466650 (U00039) No definition line
found [Escherichia coli] >gi|1789929 (AE000427) putative
membrane protein [Escherichia coli]
Length = 385
Score = 61.7 bits (147), Expect = 1e-08
Identities = 89/389 (22%), Positives = 149/389 (37%), Gaps = 55/389 (14%)
Query: 10 RIYLLPLA-----LTACGNNHAPDPRTEAPLVRVVAVQ-GAFATSRSFTGVVAARVQSDL 63
R L+PL LTAC + A + P V VV + G+ G +++
Sbjct: 5 RKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEI 64
Query: 64 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERR 123
+V G ++KR G V +G L IDP L + + + ++A A + A A R
Sbjct: 65 RPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNR 124
Query: 124 YRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETL 183
L+ VS YD + + A A + A+A + A L YA + + GV ++
Sbjct: 125 QASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSS 184
Query: 184 AEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLS 243
G +V+A Q +++V + + L P L Q+ Q + + V S
Sbjct: 185 VTVGALVTANQ----------ADSLVTV-QRLDPIYVDLTQSV-----QDFLRMKEEVAS 228
Query: 244 NAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVP-------------- 289
+V + + LE ++ G T+K P E+ S+ +
Sbjct: 229 GQIKQVQGSTPVQLNLENGKRYSQTG-TLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGM 287
Query: 290 -IGALFDPGKGPGVWVI--DGKPAKAVWRSIKVLGLTDDVAQ---------------VKG 331
+ AL D G V ++ +G A ++ ++ DDV Q V
Sbjct: 288 YVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTS 347
Query: 332 NLKVGDQVVSLGAHLLREGEIVRPIGQGE 360
L+ GD+V+ G +R G R I +
Sbjct: 348 GLQAGDRVIVSGLQRIRPGIKARAISSSQ 376
>gi|6967841|emb|CAB74203.1| (AL139075) putative membrane fusion
component of efflux system [Campylobacter jejuni]
Length = 367
Score = 59.7 bits (142), Expect = 4e-08
Identities = 76/353 (21%), Positives = 140/353 (39%), Gaps = 14/353 (3%)
Query: 16 LALTACGNNHAPDPRTEA-PLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKR 74
L LTAC AP + P+ + A S ++ + + + +VSG + +
Sbjct: 16 LLLTACSKEEAPKIQMPPQPVTTMSAKSEDLPLSFTYPAKLVSDYDVIIKPQVSGVIENK 75
Query: 75 FVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVS 134
G VK+GQ L I+ + A+A + A D R + L +K +S
Sbjct: 76 LFKAGDKVKKGQTLFIIEQDKFKASVDSAYGQALMAKATFENASKDFNRSKALFSKSAIS 135
Query: 135 TSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAG- 193
YD A +++ A L +A AQ AR L + + A DG + + L G VSA
Sbjct: 136 QKEYDSSLATFNNSKASLASARAQLANARIDLDHTEIKAPFDGTIGDALVNIGDYVSAST 195
Query: 194 QPVVRLARTGEREAIVYLPETLRPAI------GSLGQATLYGNPQ---AAVSARLRVLSN 244
+VR+ A ++ +T + + G +++ N V +L + +
Sbjct: 196 TELVRVTNLNPIYADFFISDTDKLNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDS 255
Query: 245 AADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPGVWV 304
D + T +A+ + + GA + + + +VP A+ V+V
Sbjct: 256 VIDANSGTVKAKAIFDNNNSTLLPGAFATITSEGFIQK-NGFKVPQIAV--KQNQNDVYV 312
Query: 305 IDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVRPIG 357
+ K K S+ + ++ A + L+ GD+++ ++ G V+ IG
Sbjct: 313 LLVKNGKVEKSSVHISYQNNEYAIIDKGLQNGDKIILDNFKKIQVGSEVKEIG 365
>gi|3769483 (AF073776) MexG [Pseudomonas aeruginosa]
Length = 396
Score = 59.3 bits (141), Expect = 5e-08
Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 2/185 (1%)
Query: 13 LLPLALTACGNNHAPDPRTEAP--LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGK 70
L+ L L C EAP + +VA + G + A Q+++ RV+G
Sbjct: 16 LVALFLLGCEEAADAGKTAEAPAEVGVIVARPAPIGITSELPGRLEAYRQAEVRARVAGI 75
Query: 71 VLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAK 130
V +R + GQ V+ G L +DP L +A A A +RY +L+
Sbjct: 76 VTRRLYEEGQDVRAGTVLFQMDPCALKAALDISRGALARAEGNQPAAAEKFKRYAELIQD 135
Query: 131 GVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVV 190
+S Y + + A LAQ+ + + + YA + A DG L G +V
Sbjct: 136 RAISEREYTEAQTDARQPLAQIASGQGRTGAGPPAPWYATVTAPIDGRARRALVTEGALV 195
Query: 191 SAGQP 195
P
Sbjct: 196 GEDSP 200
>gi|586667|sp|P37626|YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN
RHSB-PIT INTERGENIC REGION PRECURSOR (F355)
>gi|1073452|pir||S47707 hypothetical protein f355 -
Escherichia coli >gi|466624 (U00039) No definition line
found [Escherichia coli] >gi|1789900 (AE000424) putative
membrane protein [Escherichia coli]
Length = 355
Score = 58.9 bits (140), Expect = 6e-08
Identities = 70/278 (25%), Positives = 116/278 (41%), Gaps = 62/278 (22%)
Query: 35 LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPI 94
L+R V FA S G + A + D+ +++G++ V G+ V+ G+ L +D
Sbjct: 26 LLRPAGVPEGFAVSN---GRIEA-TEVDIASKIAGRIDTILVKEGKFVREGEVLAKMDTR 81
Query: 95 DLG---LQAQAQ----EETVAAARA---------RAKQAVNDER------------RYRD 126
L L+A AQ + VAAA+A RA Q++ ++R R R
Sbjct: 82 VLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRS 141
Query: 127 LVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAI---------------- 170
L +G +S D +AAA+SA A L++A+AQ ++ + A
Sbjct: 142 LAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQAT 201
Query: 171 ------------LLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPA 218
L A DG V +AEPG+V++AG V+ + + +LP
Sbjct: 202 ERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGT 261
Query: 219 IGSLGQATLY--GNPQAAVSARLRVLSNAADRVTRTYE 254
+ G+A L P + A + +++ A +T E
Sbjct: 262 LKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVE 299
>gi|1176207|sp|P46482|YHCQ_ECOLI HYPOTHETICAL 34.8 KD PROTEIN IN
ARGR-CAFA INTERGENIC REGION >gi|606180|gb|AAA58043.1|
(U18997) ORF_f310 [Escherichia coli] >gi|1789637
(AE000403) putative membrane protein [Escherichia coli]
Length = 310
Score = 55.0 bits (130), Expect = 9e-07
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 67 VSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRD 126
VSG + + V Q+VK+GQ L +ID + + VA + A++ + R R+
Sbjct: 54 VSGLITQVNVHDNQLVKKGQILFTIDQPRYQKALEEAQADVAYYQVLAQEKRQEAGR-RN 112
Query: 127 LVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEP 186
+ +S DQ + L QL A+A D+A+ L ++ A ADG V
Sbjct: 113 RLGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYT 172
Query: 187 GQVVSAGQPVVRLARTGEREAIVYLPET 214
G+ ++ G V L + + Y+ ET
Sbjct: 173 GEFITRGSTAVALVKQNSFYVLAYMEET 200
>gi|5081697|gb|AAD39494.1|AF145798_1 (AF145798) immunoreactive 36
kDa antigen PG14 [Porphyromonas gingivalis]
Length = 331
Score = 53.9 bits (127), Expect = 2e-06
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 58/226 (25%)
Query: 35 LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRF----VDTGQIVKRGQPLMS 90
++ VV + G F R ++ +++ +RVS KV R V GQ V+ G L
Sbjct: 20 VIAVVTIVGFFML-RPAEEIIQGQIEVT-EYRVSSKVPGRIKELRVSEGQQVQAGDTLAV 77
Query: 91 IDPIDLGL---QAQAQEETVAAARARAKQAVNDER-----------------------RY 124
I+ D+ QA+A E A A+A + E+ R
Sbjct: 78 IEAPDVAAKMEQAKAAEAAAQAQNAKALKGARSEQIQAAYEMWQKAQAGVAIATKTHQRV 137
Query: 125 RDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARN-------------------- 164
++L +GVV D+ A D+A+A KAAEAQ ++ARN
Sbjct: 138 QNLYDQGVVPAQKLDEATAQRDAAIATQKAAEAQYNMARNGAEREDKLAASALVDRARGA 197
Query: 165 ------TLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGE 204
++ L+A G V E + G++V G P++ +A G+
Sbjct: 198 VAEVESYINETYLIAPRAGEVSEIFPKAGELVGTGAPIMNIAEMGD 243
>gi|1787013 (AE000181) putative membrane protein [Escherichia coli]
>gi|4062353|dbj|BAA35455| (D90716) Hypothetical protein
f355 [Escherichia coli] >gi|4062358|dbj|BAA35461|
(D90717) Hypothetical protein f355 [Escherichia coli]
Length = 332
Score = 52.3 bits (123), Expect = 6e-06
Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 54/247 (21%)
Query: 62 DLGFRVSGKVLKRFVDTGQIVKRGQPLMSID--PIDLGLQ--------AQAQ-------- 103
+L FRV G+V VD G +K GQ L +D P ++ L AQAQ
Sbjct: 46 NLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLMLAGY 105
Query: 104 -EETVAAARARAKQAV-------NDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAA 155
E +A A A KQA N R + L +S + + +++ D A A LK+A
Sbjct: 106 RNEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSA 165
Query: 156 E------------------------AQADVARNTLSY--AILLADADGVVVETLAEPGQV 189
+ AQA +A+ L+ + L+A +DG ++ EPG V
Sbjct: 166 QDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTV 225
Query: 190 VSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLY--GNPQAAVSARLRVLSNAAD 247
++ G V ++ T Y+ E + LY G P ++ +S A+
Sbjct: 226 LNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAE 285
Query: 248 RVTRTYE 254
+T E
Sbjct: 286 FTPKTVE 292
>gi|95799|pir||S18536 envelope protein - Escherichia coli
>gi|228462|prf||1804337A envC gene [Escherichia coli]
Length = 384
Score = 52.3 bits (123), Expect = 6e-06
Identities = 44/153 (28%), Positives = 66/153 (42%), Gaps = 4/153 (2%)
Query: 25 HAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKR 84
H +P+ +V+ ++ G A +++ +VSG VL R G V+
Sbjct: 33 HVGEPQVTVHIVKTAPLE----VKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQA 88
Query: 85 GQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAA 144
GQ L IDP + + +A + A A A +RY LV +S YDQ A
Sbjct: 89 GQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIAD 148
Query: 145 ADSALAQLKAAEAQADVARNTLSYAILLADADG 177
A A A + AA+A + AR L+Y + A G
Sbjct: 149 ARQADAAVIAAKATVESARINLAYTKVTAPISG 181
>gi|418560|sp|P32716|YJCR_ECOLI HYPOTHETICAL 36.9 KD PROTEIN IN
FDHF-ALSK INTERGENIC REGION >gi|396417 (U00006) similar
to E. coli multidrug resistance protein A [Escherichia
coli] >gi|1790519 (AE000481) putative membrane protein
[Escherichia coli]
Length = 343
Score = 51.9 bits (122), Expect = 8e-06
Identities = 64/245 (26%), Positives = 91/245 (37%), Gaps = 52/245 (21%)
Query: 35 LVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDP- 93
LV +V V ++ S A+ D+ VSG++++ V Q VK+G L IDP
Sbjct: 23 LVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPR 82
Query: 94 ---------------IDLGLQ------------AQAQEETVAAARARAKQAVNDERRYRD 126
+D + A + TV ARA AKQA + RR
Sbjct: 83 PYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEP 142
Query: 127 LVAKGVVSTSAYDQIKAA------------------------ADSALAQLKAAEAQADVA 162
L+ +G VS D+ + A D+ +AQ A EA +
Sbjct: 143 LLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAASAVSGVDALVAQRAAVEADIALT 202
Query: 163 RNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSL 222
+ L A + A DG V+ GQ SA +P+ L T I ET I S
Sbjct: 203 KLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSG 262
Query: 223 GQATL 227
AT+
Sbjct: 263 TPATI 267
>gi|1001690|dbj|BAA10427| (D64002) hypothetical protein
[Synechocystis sp.]
Length = 501
Score = 51.9 bits (122), Expect = 8e-06
Identities = 69/272 (25%), Positives = 110/272 (40%), Gaps = 36/272 (13%)
Query: 14 LPLALTACGNNHAPDPRTEAPLVRVVAVQ----GAFATSRSFTGVVAARVQSDLGFRVSG 69
L L TACG + P AP V +Q + S F G + A +L ++ G
Sbjct: 17 LALLNTACGGDK---PGANAPRAIPVQLQTLEPSSVVDSNEFVGNLVATNFVELAPKIDG 73
Query: 70 KVLKRFVDTGQIVKRGQPLMSIDPIDL---------GLQAQAQEETVAAARARAKQAVND 120
++L+ + GQ V G P++ ++P L Q V+ A R ++ D
Sbjct: 74 RILRIYAQWGQQVNEGDPILLLEPTQQQENVNAAVGNLNIQRSNFQVSEANLRTSESERD 133
Query: 121 ERRYRDLVAKGVVSTSAYDQIKAAADSALAQ--LKAAEAQADVARNTLSYAILLADADGV 178
A+ V+T + +A AD A +Q LK EA A+ L+ A +
Sbjct: 134 -------AAQSFVTTQEANLARAIADLANSQEVLKTREADLKRAQANLNLAQINFKRAQF 186
Query: 179 VVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSAR 238
+VET +P Q + + AR A +T++ A +AT+ N Q++VSA
Sbjct: 187 LVETGVQPQQDLDNRTTELEDARANTEAA----QKTVQAA-----KATVQAN-QSSVSAS 236
Query: 239 LRVLSNAADRVTRTYEARYVLEGALLHAPLGA 270
+ A D + R A ++A GA
Sbjct: 237 RSAVQQAKDNYQAAVQ-RVSASRATINAQKGA 267
Score = 38.3 bits (87), Expect = 0.10
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 101 QAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQAD 160
QA + +V+A+R+ +QA ++ Y+ V + S + + K A + A QL A +
Sbjct: 227 QANQSSVSASRSAVQQAKDN---YQAAVQRVSASRATINAQKGAIEQAQGQLGATSQE-- 281
Query: 161 VARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLP-ETLRPAI 219
L Y +LA GVV + G V GQ + E E + +P E
Sbjct: 282 -----LIYNRVLAPVSGVVGNLPLQIGDFVRTGQSFTTITNNNEFELDINVPVERYNDLR 336
Query: 220 GSLGQATLYGNPQAAVSARLRVLSNAADRVTRTYEARYVLE 260
L + + QA R+ +S A+R ++ A+ + +
Sbjct: 337 LGLPVEVVRSDGQAGEVGRISFISPTANRNDQSILAKVIFK 377
>gi|3914125|sp|Q44585|NCCB_ALCXX NICKEL-COBALT-CADMIUM RESISTANCE
PROTEIN NCCB >gi|2120931|pir||I39579 nccB protein -
Alcaligenes denitrificans >gi|773675 (L31363) nccB
[Alcaligenes xylosoxidans]
Length = 397
Score = 49.6 bits (116), Expect = 4e-05
Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 14/288 (4%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYR 125
R +G VL+ G V+ G L +D + A A E VA +ARA A R
Sbjct: 108 RAAGAVLRIQRKLGDAVRAGDVLALVDSPEAA--AMAAERKVA--QARADLARKTYERES 163
Query: 126 DLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVAR---NTLSYAILLADADGVVVET 182
L +GV + + A D A A+++ A A A+ + S A++ A + ++
Sbjct: 164 SLFQQGVTPRQEMESARIALDVAQAEVQRAATVAQAAKVSSDGRSVAVVSPIAGRITAQS 223
Query: 183 LAEPGQVVSAGQPVVRLARTG--EREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLR 240
+ G V+ + R+A +G + EA V +T R A GS AT+ A ++ R++
Sbjct: 224 VT-LGAYVAPQAELFRVAGSGAVQVEAYVTAADTSRIAAGS--DATIVLANGAPLAGRVQ 280
Query: 241 VLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGP 300
++ R A +G V+V + +++ VP A+ +
Sbjct: 281 AVTPTVSGSARAATVVVTPVDANSGLIVGEGVQVRLHTKAADANAMSVPEDAVQNLDGRD 340
Query: 301 GVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLR 348
V+V + + +S+ V + VAQ+ +K G+QV + A L++
Sbjct: 341 VVFVRTQQGFRP--KSVLVGSRSGGVAQILSGVKPGEQVATRNAFLIK 386
Score = 36.0 bits (81), Expect = 0.52
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 31/242 (12%)
Query: 129 AKGVVSTSAYD--QIKAAADSALAQLKAAE-AQADVARNTLSYAILLAD---ADGVVVET 182
A+G+ S S + ++ AA + A A AAE A+ + L+ A + + A GV
Sbjct: 30 ARGLGSPSGAEVSKLAAAPEKAAASAPAAEPAEVRIPGEYLAAANIAVEPVSAGGVGSVL 89
Query: 183 LAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVL 242
LA G V +R A++ + L A+ + L +P+AA A R +
Sbjct: 90 LAPASVAAVPGSEAVIASRAAG--AVLRIQRKLGDAVRAGDVLALVDSPEAAAMAAERKV 147
Query: 243 SNA-ADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGPG 301
+ A AD +TYE E +L G T + E+ + ++ Q +
Sbjct: 148 AQARADLARKTYER----ESSLFQQ--GVTPRQEMESARIALDVAQAEVQR--------A 193
Query: 302 VWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLLREGEIVRPIGQGEA 361
V + RS+ V V+ + G + Q V+LGA++ + E+ R G G
Sbjct: 194 ATVAQAAKVSSDGRSVAV------VSPIAGRITA--QSVTLGAYVAPQAELFRVAGSGAV 245
Query: 362 MV 363
V
Sbjct: 246 QV 247
>gi|1742709|dbj|BAA15404| (D90807) Fusaric acid resistance protein
FusE. [Escherichia coli]
Length = 329
Score = 49.6 bits (116), Expect = 4e-05
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSID--PIDLG-LQAQAQEETVAAARARAKQAVNDER 122
+VSG++++ + Q+V G L++ID P + L AQAQ +A A++ +A N+
Sbjct: 50 QVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQ---LAKAQSDLAKANNEAN 106
Query: 123 RYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVET 182
R R L ++ +S D + A + AA+A A+ L+ + A G V
Sbjct: 107 RRRHL-SQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNL 165
Query: 183 LAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAI--GSLGQATLYGN 230
G G+P+ L + I Y ET I G+ Q TLY +
Sbjct: 166 TTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSD 215
>gi|3183279|sp|P76185|YDHJ_ECOLI HYPOTHETICAL 33.0 KD PROTEIN IN
SLYA-SODC INTERGENIC REGION >gi|1787932 (AE000259)
putative membrane protein [Escherichia coli]
Length = 299
Score = 49.6 bits (116), Expect = 4e-05
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSID--PIDLG-LQAQAQEETVAAARARAKQAVNDER 122
+VSG++++ + Q+V G L++ID P + L AQAQ +A A++ +A N+
Sbjct: 64 QVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQ---LAKAQSDLAKANNEAN 120
Query: 123 RYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVET 182
R R L ++ +S D + A + AA+A A+ L+ + A G V
Sbjct: 121 RRRHL-SQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNL 179
Query: 183 LAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAI--GSLGQATLYGN 230
G G+P+ L + I Y ET I G+ Q TLY +
Sbjct: 180 TTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSD 229
>gi|584963|sp|P37973|CNRB_ALCEU NICKEL AND COBALT RESISTANCE PROTEIN
CNRB >gi|420933|pir||F47056 nickel-cobalt resistance
determinant structural protein CnrB - Alcaligenes
eutrophus >gi|141923 (M91650) cnrB [Alcaligenes
eutrophus]
Length = 395
Score = 48.4 bits (113), Expect = 9e-05
Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 30/296 (10%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSID-PIDLGLQAQAQEETVAAARARAKQAVNDERRY 124
R +G V + G +VK G L +D P G+ A+ + A+A+A A R
Sbjct: 106 RAAGAVQRVQRRLGDVVKAGDVLALVDSPEAAGMAAERK-----VAQAKADLARKTYERE 160
Query: 125 RDLVAKGVVSTSAYDQIKAAADSALAQ-LKAAEA--QADVARNTLSYAILLADADGVVVE 181
L +GV + KAA D A A+ L+AA A +A + S A++ A + +
Sbjct: 161 ASLFQQGVTPRQEMEAAKAALDVAQAEALRAATVAQSAHLASDGRSVAVVSPIAGKITAQ 220
Query: 182 TLAEPGQVVSAGQPVVRLARTG--EREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARL 239
++ G V+ + R+A TG + EA V +T R GS +AT+ + +SAR+
Sbjct: 221 SVT-LGAFVAPQAELFRVAGTGAVQVEAAVTAADTSRIVAGS--EATILLANGSPLSARV 277
Query: 240 RVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKG 299
+ ++ R V +G V+V + + ++L VP A
Sbjct: 278 QAVTPTVTGSARVATVVVVPAQPTDRLVVGEGVQVRLRTAVADAAALSVPEDA------- 330
Query: 300 PGVWVIDGKPAKAV-----WRSIKVLGLT--DDVAQVKGNLKVGDQVVSLGAHLLR 348
V +DG+ V +R + VL T AQ+ ++ G+QV + A L++
Sbjct: 331 --VQNLDGRDVLFVRTQEGFRPMPVLVGTRSGGSAQILSGVQAGEQVATRNAFLVK 384
>gi|2982989 (AE000682) putative protein [Aquifex aeolicus]
Length = 371
Score = 46.5 bits (108), Expect = 4e-04
Identities = 48/196 (24%), Positives = 79/196 (39%), Gaps = 39/196 (19%)
Query: 52 TGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSID--PID-----LGLQAQ--- 101
TG V A + ++ +V+G V + + D GQ VK+G+PL I P++ L +Q Q
Sbjct: 44 TGYVKALNEVEVKAKVAGYVSEVYKDVGQKVKKGEPLARIQNKPLEEKVKILEIQLQNLK 103
Query: 102 -----------AQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALA 150
A E + A R K+ +R + L K ++S Y+ +K + L
Sbjct: 104 EKIREDSPFIRAYELKIKALREEVKELEEKLKRRKRLYEKELISKEEYESLKRKYRAKLE 163
Query: 151 QLKAAE------------------AQADVARNTLSYAILLADADGVVVETLAEPGQVVSA 192
LKA E A + A+ L + + DGV+++ E G+ V+
Sbjct: 164 SLKALESEFKESVEEVRRKIREVKANLEKAKEELGEYTVRSPIDGVILKKNVEVGEYVNT 223
Query: 193 GQPVVRLARTGEREAI 208
L G E +
Sbjct: 224 FMETKPLFVVGNTEKL 239
>gi|2109270 (U97042) CeoA [Burkholderia cepacia]
Length = 405
Score = 45.7 bits (106), Expect = 6e-04
Identities = 37/138 (26%), Positives = 65/138 (46%), Gaps = 4/138 (2%)
Query: 25 HAPDPRTEAPLVRV---VAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQI 81
+AP+ + APL V V +S++G + A + D+ +VSG ++ G +
Sbjct: 35 NAPE-KAAAPLPEVDVATVVPQTVTDWQSYSGRLEAVEKVDVRPQVSGTIVAVNFKDGAL 93
Query: 82 VKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQI 141
VK+G L IDP + +AAA+AR A D +R + L+ ++ YD+
Sbjct: 94 VKKGDVLFVIDPRPYQAEVDRAAAQLAAAQARNGYAQTDWQRAQRLIGDNAIAKRDYDEK 153
Query: 142 KAAADSALAQLKAAEAQA 159
+ AA A + + ++A
Sbjct: 154 QNAAREAKREPEGRRSRA 171
>gi|3378278 (AF079317) putative aromatic efflux pump membrane
protein [Sphingomonas aromaticivorans]
Length = 381
Score = 45.7 bits (106), Expect = 6e-04
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 30/232 (12%)
Query: 67 VSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRD 126
++G ++ V+ Q VK G L+ +D + + E +AAAR + QA
Sbjct: 71 IAGSAIEVLVEDTQQVKAGDVLVRLDQANAKIAVAQAEADLAAARRKFGQA--------- 121
Query: 127 LVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEP 186
VA ++ D A A A+L+ AE++ D AR L + + + E L +
Sbjct: 122 -VATNSALSAQIDTSSAGLVQARARLRTAESEFDKARIDLRRREAVIASGAISGEELTQA 180
Query: 187 GQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAA 246
+ ++ + AR G E + R A G L AA A +R S
Sbjct: 181 RKAYASANAALEAARGGISE----VTSARRVAQGQL----------AANDALVRGSSVDT 226
Query: 247 DRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGK 298
D + +AR L+ ALL ++ P S +S LQ+ +G PG+
Sbjct: 227 DPAVQAAKAR--LDAALLDL---QRTEIRAPVS-GVVSRLQIQVGQRLSPGQ 272
>gi|3860901|emb|CAA14801| (AJ235271) unknown [Rickettsia prowazekii]
Length = 341
Score = 45.7 bits (106), Expect = 6e-04
Identities = 70/295 (23%), Positives = 117/295 (38%), Gaps = 37/295 (12%)
Query: 68 SGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDL 127
+G V K G+IVK+G L+ ID E T + A A D R L
Sbjct: 72 TGVVEKVSAQQGKIVKKGDILLVID-------QNIAETTKSRASALLDIRQEDYNRKEAL 124
Query: 128 VAKGVVSTSAYDQIKAA-ADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEP 186
AK VS AY K+A D+ L KA + D+ I+ A G +
Sbjct: 125 FAKKFVSNEAYKMSKSALEDAKLNYSKALKIYNDM--------IITAPYSGKIGVIKYMV 176
Query: 187 GQVVSAGQPVVRLART-GEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNA 245
G V G + + T E+ + LPE+L + + + G ++ + LS
Sbjct: 177 GDEVKIGDYLFSITGTENEQSIFIELPESLSEKVRVNTEVLIEGKIKSTIDTVSHYLSE- 235
Query: 246 ADRVTRTYEARYVLEGALLHAPLGATVK----VEIPDSTESISSLQVPIGALFDPGKGPG 301
T+ A+ +L P+G + V++ +L +P + +G
Sbjct: 236 ----NGTFTAKIIL-------PVGTKILHNSFVDVKLIINPHQNLTIPESCIQRNNQGHF 284
Query: 302 VW-VIDGKPAKAVWRSIKVLGLTDDVAQVKGN-LKVGDQVVSLGAHLLREGEIVR 354
++ +IDG K V+ +++ T+ ++ N +K GD VV G + +G V+
Sbjct: 285 IYKIIDGNTVKQVY--VQIGTRTEGRIEITSNDIKEGDLVVIEGMTKIDDGSKVK 337
>gi|1651721|dbj|BAA16649| (D90899) hypothetical protein
[Synechocystis sp.]
Length = 520
Score = 45.3 bits (105), Expect = 8e-04
Identities = 40/127 (31%), Positives = 60/127 (46%), Gaps = 22/127 (17%)
Query: 99 QAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQ 158
QAQAQ ++ AA A + V RR+R+L +GV+S AYDQ A+A ++AA+ +
Sbjct: 198 QAQAQLDSAKAAAELASERV---RRFRNLRDQGVISLDAYDQQLKEERQAIADVEAAQRR 254
Query: 159 ADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPA 218
R S +D + + E V A + + + GER PET+ A
Sbjct: 255 LQQLRQARS-----SDVERLTAE--------VDAQRQNLNRLQAGER------PETIAQA 295
Query: 219 IGSLGQA 225
+GQA
Sbjct: 296 RARVGQA 302
>gi|2983499 (AE000717) putative protein [Aquifex aeolicus]
Length = 167
Score = 44.5 bits (103), Expect = 0.001
Identities = 30/125 (24%), Positives = 55/125 (44%)
Query: 67 VSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRD 126
V GKV K FV G VK+ Q L+ I L+ +A E + + K+A RRY +
Sbjct: 29 VKGKVQKVFVKEGDTVKKAQKLLKISDELYTLKLKALEAKLMELEEKRKKAERYYRRYEE 88
Query: 127 LVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEP 186
+ + +++ S + + Q++ A+ + + ++Y + + G V L
Sbjct: 89 MFNRDLLAESVLEDKRTELKVLEYQIEEVRAEMERIKKLINYTEVRSPFSGKVKSVLVGE 148
Query: 187 GQVVS 191
G V+
Sbjct: 149 GSFVN 153
>gi|1653814|dbj|BAA18725| (D90916) hypothetical protein
[Synechocystis sp.]
Length = 451
Score = 43.4 bits (100), Expect = 0.003
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 32/170 (18%)
Query: 103 QEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVA 162
Q+ T+ +A QA ND+RRYR L G ++ + ++Q + +++ +L+ A+A+
Sbjct: 188 QQATIDRLQAEVNQAANDDRRYRSLAENGAIAMADWEQRRLNLETSNQRLREAQAR---- 243
Query: 163 RNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSL 222
L + + E + E V + L R R + + E +RP
Sbjct: 244 ---------LMKTEATLEEQIREQQSVRDKDAQTMVLERESARATLSQIAE-IRPVDVQK 293
Query: 223 GQATLYGNPQAAVSARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATV 272
+A L N A + R EAR L+ AL+ AP+ + V
Sbjct: 294 AKAEL----------------NLA--MARFQEARAELDTALVRAPVDSQV 325
>gi|2983555 (AE000721) putative protein [Aquifex aeolicus]
Length = 374
Score = 43.4 bits (100), Expect = 0.003
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 55 VAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARA 114
V A S L FRVSGKV++ + D G VKRG+ L +DP L+ + E+ ++A +
Sbjct: 39 VKADELSYLSFRVSGKVIEVYKDLGDYVKRGEALAKLDPTYYELEKRTLEKKMSALLEKK 98
Query: 115 K 115
K
Sbjct: 99 K 99
Score = 38.7 bits (88), Expect = 0.079
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Query: 87 PLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDE-RRYRDLVAKGVVSTSAYDQIKAAA 145
P + +D L+ E ++ Q +N E +R + + +++K
Sbjct: 164 PRRKFEEVDTNLKVLLHEREYLE---KSIQEINTEIKRAKKGIENARNEFKTIEELKKEL 220
Query: 146 DSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGER 205
S ++K+ + + A + +L+A DGVV + G VV AGQP L
Sbjct: 221 SSLEEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGDVVRAGQPAFALVNPESF 280
Query: 206 EAIVYLPET 214
V L ET
Sbjct: 281 YVEVLLEET 289
Score = 32.1 bits (71), Expect = 7.8
Identities = 19/66 (28%), Positives = 34/66 (50%), Gaps = 2/66 (3%)
Query: 69 GKVLKRFVDTGQIVKRGQPLMS-IDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDL 127
G V KRF+ G +V+ GQP + ++P ++ +E + + K V + Y D+
Sbjct: 252 GVVAKRFISRGDVVRAGQPAFALVNPESFYVEVLLEETKLKGVKVGNKAYVRLD-AYPDI 310
Query: 128 VAKGVV 133
+ +GVV
Sbjct: 311 LFEGVV 316
>gi|6458444|gb|AAF10314.1|AE001929_7 (AE001929) conserved
hypothetical protein [Deinococcus radiodurans]
Length = 387
Score = 42.2 bits (97), Expect = 0.007
Identities = 79/341 (23%), Positives = 123/341 (35%), Gaps = 60/341 (17%)
Query: 52 TGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDP------------------ 93
+ + A S + + SG V V GQ V +G L+ +D
Sbjct: 41 SATIHAERDSQVATQSSGAVQSIPVSQGQAVAKGDVLVKLDDTAQQQALDNARLQQRQAQ 100
Query: 94 --IDLGLQAQAQ-----EETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAAD 146
+D Q+ +Q + +V +A+A QA + + L G +S + ++
Sbjct: 101 ISLDQTRQSTSQGTGALQASVTSAQAALAQAEQNAQSAEKLYGLGGISLADVQAARSQLA 160
Query: 147 SALAQLKAA------------------EAQADVARNT-------LSYAILLADADGVVVE 181
A AQL A + Q D AR LS + A G V +
Sbjct: 161 QAQAQLAQARNTLEQNGRSAGNSVPLAQVQLDTARTAVRQAEQNLSRTAVRAPFAGTVAD 220
Query: 182 TLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATL-YGNPQAAVSARLR 240
L E G+ G PV+RL G A V +P A+ + L YG +
Sbjct: 221 VLTEVGEFAGQGTPVIRLVDPGSVRARVGVPTADAAALTEGVKFNLSYGGKSYVATV--- 277
Query: 241 VLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKGP 300
V S+ R +EG P+GA + + S L +P AL G
Sbjct: 278 VDSSGIAGKDRLVPITATIEGGNA-LPVGAAARASYRATLG--SGLLIPASALQVEGGEN 334
Query: 301 GVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVS 341
V+V + KA ++V+ + + V G L+ GD V+S
Sbjct: 335 AVYV--ARSGKAEREVVQVVAESGNRVVVSG-LQDGDAVIS 372
>gi|3248942 (AF064947) unknown [Coxiella burnetii]
Length = 239
Score = 42.2 bits (97), Expect = 0.007
Identities = 45/175 (25%), Positives = 74/175 (41%), Gaps = 19/175 (10%)
Query: 52 TGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAAR 111
TG + A Q+++ +V+G V K G V G L+ +D Q Q+ +AAA+
Sbjct: 57 TGTLVANNQTNISPKVAGYVTKIAFSPGDFVTAGSVLIQLD-------NQKQKNDLAAAK 109
Query: 112 ARAKQAVNDERRYRDLVAKG-VVSTSAY-DQIKAAADSALAQLKAAEAQADVARNTLSYA 169
A + + +R + KG ++ T+ Y D++ D ALAQ + L
Sbjct: 110 ADVELSELQYQRDALALKKGLILQTTVYSDKVSLDKDKALAQ---------TDQTALQDM 160
Query: 170 ILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQ 224
L A G + G V+ GQ +V L + + + LP P + +GQ
Sbjct: 161 TLRAPFSGYLGAKQFSLGDYVTPGQKLVTLVDQQKLKVVYDLPNHFAPQL-QIGQ 214
>gi|3414725 (AF047693) multidrug resistance efflux pump homolog PmrA
[Pseudomonas aeruginosa]
Length = 394
Score = 41.0 bits (94), Expect = 0.016
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEET------------------- 106
++ G V+ D G +V++GQ L+ DP D + Q E
Sbjct: 62 QIVGTVVSIGADDGDLVRKGQELVRFDPSDADIALQRAEANLAHTVRQVRGLFSNVDGYR 121
Query: 107 --VAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVAR 163
VA + +A D +R ++L G +S + A DSA A L ++E Q + R
Sbjct: 122 AEVATRKVALAKAEADYKRRKNLADDGAISQEELAHARDALDSAKASLTSSEQQLNTNR 180
Score = 32.1 bits (71), Expect = 7.8
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 67 VSGKVLKRFVDTGQIVKRGQPLMSIDPID-LGLQAQAQEETVAAARARAKQAVNDERRYR 125
V+G V KR V GQ V+ G LM++ P+D + + A +E + R +
Sbjct: 217 VTGYVAKRSVQVGQRVQPGNALMAVVPLDQIWIDANFKETQLKHMRIGQPVEIRS----- 271
Query: 126 DLVAKGVVSTSAYDQIKAAADSALAQLKAAEA 157
DL V + D + SA + L A A
Sbjct: 272 DLYGSDVRYSGTVDSLGVGTGSAFSLLPAQNA 303
>gi|1653651|dbj|BAA18563| (D90915) hypothetical protein
[Synechocystis sp.]
Length = 467
Score = 39.5 bits (90), Expect = 0.046
Identities = 30/116 (25%), Positives = 55/116 (46%), Gaps = 1/116 (0%)
Query: 99 QAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAA-ADSALAQLKAAEA 157
+A+ +E + +A A Q ++ + ++ + S A QI+ +A AQ+ A A
Sbjct: 205 RARQAKEILRNEQASASQQLSQAKTAAKTASQILNSAIAQVQIEQQRVGAATAQMNAQRA 264
Query: 158 QADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPE 213
+ A+ YA + A G V+ L+EPG +V G +++L + E V + E
Sbjct: 265 SIEQAQTRQQYATVRAPFPGRVLRRLSEPGNLVQPGTEILQLGDFRQLEIDVQVSE 320
>gi|4155990 (AE001560) putative [Helicobacter pylori J99]
Length = 329
Score = 39.5 bits (90), Expect = 0.046
Identities = 53/213 (24%), Positives = 82/213 (37%), Gaps = 53/213 (24%)
Query: 53 GVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLG---LQAQA------- 102
G + AR S + +V G++ K FV G +K+G + SI +L QA+A
Sbjct: 40 GFLEAREYS-VSSKVPGRIEKVFVKKGDRIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
Query: 103 ---------QEETV-------AAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAAD 146
++ET+ AA+++A A +R +DL GV S D+ AA +
Sbjct: 99 VSDEVKRGSRDETINSARDVWQAAKSQANLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
Query: 147 S--------------------------ALAQLKAAEAQADVARNTLSYAILLADADGVVV 180
S A A+ AA Q + + L LA DG V
Sbjct: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKALAPIDGEVS 218
Query: 181 ETLAEPGQVVSAGQPVVRLARTGEREAIVYLPE 213
L G++ G PVV + + + +PE
Sbjct: 219 NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPE 251
>gi|1652466|dbj|BAA17388| (D90905) hypothetical protein
[Synechocystis sp.]
Length = 514
Score = 38.7 bits (88), Expect = 0.079
Identities = 51/269 (18%), Positives = 102/269 (36%), Gaps = 29/269 (10%)
Query: 13 LLPLALTACGNNHAPDPRTEAPLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVL 72
+L + + A + + P ++E V+A + +G V + ++ + G+++
Sbjct: 26 ILVVGIFAYRSAYGPSRQSELDKYTVMATESPLEVEIKASGTVQPQQTVNISPKAPGRLV 85
Query: 73 KRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQA--------------V 118
+ FV+ G +VK+G + ++ + + E + A AR +QA V
Sbjct: 86 RLFVEQGDVVKKGDRIAVMENQEFFADGKQSEARLREAIARYEQARIRIPAEIDQLRAQV 145
Query: 119 NDERRYRDLVAKGVVSTSA------------YDQIKAAADSALAQLKAAEAQADVARNTL 166
N R + S A DQ++A SA ++LK AE + + ++ L
Sbjct: 146 NQGRTRIAQAQSQLASAQARLEQAQSRIPSNIDQLRAQVASAESRLKLAENRRNRNQSLL 205
Query: 167 SYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQAT 226
+ D + + Q + ART + + + + G++ +A
Sbjct: 206 QEGAITQDQYDELSNEFLNAQAGLFEAQSRLNNARTTASPEVGQIEQEIVQLQGAIAEAE 265
Query: 227 LYGNPQAAVSARLRVLSNAADRVTRTYEA 255
AA A+LR A+ T +A
Sbjct: 266 ---QGVAAQMAQLRERQGTAETELATLQA 291
Score = 32.1 bits (71), Expect = 7.8
Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 29/220 (13%)
Query: 142 KAAADSALAQLKAA--EAQADVARNTLSY--AILLADADGVVVETLAEPGQVV------- 190
+ A++ LA L+AA +A+A + R+ ++Y ++A DG++ + A G V
Sbjct: 279 QGTAETELATLQAAASQAEAQLMRSKIAYEDTFIVAPFDGIITQKFATVGSFVTPTTSAS 338
Query: 191 ----SAGQPVVRLARTGEREAIVYLPE----TLRPAIGSLGQATLYGNPQAAVSAR-LRV 241
+ +V LA+ E + +PE LRP G + P + R +RV
Sbjct: 339 STASATSTSIVALAQ--GLEVVARVPEVDISALRP--GQMVDIVADAFPNETFTGRVIRV 394
Query: 242 LSNA-ADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESI-SSLQVPIGALFDPGKG 299
A + ++E L A L + + V++ + + ++L VP A+ G
Sbjct: 395 APEAIVENNVTSFEVTIGL--ATGQEQLRSKMNVDVVFKGDRLANALTVPTVAIVTVGGR 452
Query: 300 PGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQV 339
GV V D + K +R + + + DD Q+ L+ ++V
Sbjct: 453 TGVMVPDAED-KPQFRPVTIGLVLDDKTQILRGLEPKERV 491
>gi|5852499|gb|AAD54073.1| (AF132909) efflux pump protein FarA
[Neisseria gonorrhoeae]
Length = 394
Score = 38.3 bits (87), Expect = 0.10
Identities = 38/125 (30%), Positives = 49/125 (38%), Gaps = 29/125 (23%)
Query: 99 QAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQ 158
QA AQ VA RA +A +D RR L G VS + A A A +KAA A+
Sbjct: 131 QAGAQ---VALRRADLARAQDDLRRRSALAESGAVSAEELAHARTAVSQAQAAVKAALAE 187
Query: 159 ADVARNTLSYAILL--------------------------ADADGVVVETLAEPGQVVSA 192
AR L + L A ADG V + + GQ V+A
Sbjct: 188 ESSARAALGGDVSLREQPEVQTAIGRLKDAWLNLRRTQVRAPADGQVAKRSVQVGQQVAA 247
Query: 193 GQPVV 197
G P++
Sbjct: 248 GAPLM 252
>gi|120622|sp|P24130|FUSE_BURCE FUSARIC ACID RESISTANCE PROTEIN FUSE
>gi|77703|pir||JS0513 fusaric acid resistance protein
fusE - Pseudomonas cepacia >gi|216884|dbj|BAA02068|
(D12503) fusE [Burkholderia cepacia]
>gi|242027|bbs|77499 (S77489) FusE [Pseudomonas cepacia,
Peptide, 168 aa] [Burkholderia cepacia]
Length = 168
Score = 37.9 bits (86), Expect = 0.14
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 89 MSIDPIDLGLQAQAQEETVAAARA-RAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADS 147
M IDP + + + AAAR+ R ++ R DL A VVS + +A S
Sbjct: 1 MQIDPSHYQIAVEQAQAVAAAARSCRCRR----RGRRADLDAL-VVSKENRENAAHSASS 55
Query: 148 ALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREA 207
A AQ + A A D +TL + ++A DG + G AGQ + + +
Sbjct: 56 ADAQYQQAIAALDARSSTLERSRVVAPVDGYITNLQTFKGNYAVAGQAKLAIVDSHSFWV 115
Query: 208 IVYLPETLRPAI 219
Y ET P +
Sbjct: 116 YGYFEETKLPRV 127
>gi|1840154|gb|AAB81283.1| (U86610) 36 kDa protein [Helicobacter
pylori]
Length = 329
Score = 37.1 bits (84), Expect = 0.23
Identities = 52/213 (24%), Positives = 81/213 (37%), Gaps = 53/213 (24%)
Query: 53 GVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLG---LQAQA------- 102
G + AR S + +V G++ K FV G +K+G + SI +L QA+A
Sbjct: 40 GFLEAREYS-VSSKVPGRIEKVFVKKGDRIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
Query: 103 ---------QEETV-------AAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAAD 146
++ET+ AA+++A A +R +DL GV S D+ AA +
Sbjct: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
Query: 147 S--------------------------ALAQLKAAEAQADVARNTLSYAILLADADGVVV 180
S A A+ AA Q + + L A DG V
Sbjct: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
Query: 181 ETLAEPGQVVSAGQPVVRLARTGEREAIVYLPE 213
L G++ G PVV + + + +PE
Sbjct: 219 NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPE 251
>gi|2498107|sp|P94851|AN36_HELPY 36 KD ANTIGEN
>gi|2314660|gb|AAD08523.1| (AE000647) conserved
hypothetical secreted protein [Helicobacter pylori
26695]
Length = 329
Score = 37.1 bits (84), Expect = 0.23
Identities = 52/213 (24%), Positives = 81/213 (37%), Gaps = 53/213 (24%)
Query: 53 GVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLG---LQAQA------- 102
G + AR S + +V G++ K FV G +K+G + SI +L QA+A
Sbjct: 40 GFLEAREYS-VSSKVPGRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKA 98
Query: 103 ---------QEETV-------AAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAAD 146
++ET+ AA+++A A +R +DL GV S D+ AA +
Sbjct: 99 LSDEVKRGSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYE 158
Query: 147 S--------------------------ALAQLKAAEAQADVARNTLSYAILLADADGVVV 180
S A A+ AA Q + + L A DG V
Sbjct: 159 STKYNESAAYQKYKMALGGASSESKIAAKAKESAALGQVNEVESYLKDVKATAPIDGEVS 218
Query: 181 ETLAEPGQVVSAGQPVVRLARTGEREAIVYLPE 213
L G++ G PVV + + + +PE
Sbjct: 219 NVLLSGGELSPKGFPVVLMIDLKDSWLKISVPE 251
>gi|2822198 (U96166) ATP-binding cassette transporter-like protein
[Streptococcus crista]
Length = 421
Score = 36.7 bits (83), Expect = 0.30
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 40 AVQGAFATSRSFTGVVAARVQSDLGFRVS-GKVLKRFVDTGQIVKRGQPLMS-IDPIDLG 97
AV + TS +G V A S + S G+V + FV G V +GQPL S + +L
Sbjct: 55 AVNNSKKTSLVLSGEVVANNSSKVKIDPSKGEVKEVFVKNGDTVTQGQPLFSYVTSQELT 114
Query: 98 LQ-----AQAQEETVAAARARAKQAVNDERRYRDLVAKGVVST--------SAYDQIKAA 144
Q AQA+ ++ AA+ A ++ E R L + S DQIK+A
Sbjct: 115 AQSAQYDAQAKANSITAAQTSA--SIKWETYNRKLANLNTLKNKYNSSKDESLLDQIKSA 172
Query: 145 ADSALAQLKAAEAQADVARNTLSYAILLADADGVVVET 182
D +L + + A A N ++ A + A+ V +T
Sbjct: 173 ED----ELAQSLSDAKTADNEVTNAQIEAEKAQVTAQT 206
>gi|3798624 (AF082100) FK506 polyketide synthase [Streptomyces sp.
MA6548]
Length = 7576
Score = 36.4 bits (82), Expect = 0.40
Identities = 70/260 (26%), Positives = 97/260 (36%), Gaps = 25/260 (9%)
Query: 33 APLVRVVAVQGAFATSRSFTGVVAARVQSDLGFRVSGKVL---KRFVDTGQIVKRGQPLM 89
A L R V A S V AA V L + KV+ R V T + G ++
Sbjct: 3369 AELWRAHGVAPAAVVGHSQGEVAAACVAGVLTLDDAAKVVALRSRLVATERAGHGG--MV 3426
Query: 90 SIDPIDLGLQAQAQEETVAAAR-------ARAKQAVND----ERRYRDLVAKGVVSTSAY 138
S+ P D A A VAA A A AV + R + T+
Sbjct: 3427 SVPPADFDAAAWAGRLEVAAVNGPASIVVAGAADAVEELLAATPHARRIAVDYASHTAHV 3486
Query: 139 DQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVV-VETLAEPGQVVSAGQPVV 197
+ I+ A ALA L + +T+ A L AD + + P V G
Sbjct: 3487 ESIRGALLDALADLTPGAPEIPFF-STVDEAWLDRPADAAYWYDNVRCP---VRFGAAAA 3542
Query: 198 RLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTRTYEARY 257
RLA G R V++ + P + + TL G+P AV+ LR A R TR+ +
Sbjct: 3543 RLAELGHR---VFVEASPHPVLTTALADTLAGHPNTAVTGTLRRGDGGARRFTRSLAELW 3599
Query: 258 VLEGALLHAPLGATVKVEIP 277
V G + P G V +P
Sbjct: 3600 V-RGVPVSWPFGELRGVPLP 3618
>gi|1314576 (U51197) unknown [Sphingomonas S88]
Length = 464
Score = 36.0 bits (81), Expect = 0.52
Identities = 51/202 (25%), Positives = 81/202 (39%), Gaps = 31/202 (15%)
Query: 68 SGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAAR--ARAKQAVNDER--- 122
SG V + V GQ V++GQ L+++DP +A + +A+ A QA+ D
Sbjct: 95 SGIVRRILVGEGQKVQKGQVLITLDPTMSAAEAAQARVALLSAQLDAARNQAIIDALDGK 154
Query: 123 --RYRDLVAKGVVSTSAY--------DQIKA-----AADSALAQLKAAEAQADVARNTLS 167
R+ A G + QI+A +DS A +AEAQA V + L
Sbjct: 155 GFRFAAPAAAGAAEVETHRGLARARLGQIEAMLAGGRSDSGAAASASAEAQAQVRK--LE 212
Query: 168 YAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATL 227
++ L + E +A G V +R ER+ + R + LGQ +
Sbjct: 213 QSLPLLEQQIAANEAMAAKGYVSKLRVVEMRRQLISERQDLT----AARATVAKLGQQS- 267
Query: 228 YGNPQAAVSARLRVLSNAADRV 249
++A S +R A +V
Sbjct: 268 ----RSASSMSIRTREEARAQV 285
>gi|6468250|emb|CAB61548.1| (AL133171) putative ABC transporter
[Streptomyces coelicolor A3(2)]
Length = 940
Score = 36.0 bits (81), Expect = 0.52
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 33/154 (21%)
Query: 79 GQIVKRGQPLM-SIDPIDLGLQAQAQEETVAAAR------------------ARAKQAVN 119
G +++ QP SI + G +A EE +AAAR AV+
Sbjct: 783 GVVLQHAQPFTGSILDVICGTEAYTPEEAMAAARMAGLAEDIERMPMGLHTIVSGSGAVS 842
Query: 120 DERRYRDLVAKGVVSTSA---YDQIKAAADS-----ALAQLKAAEAQADVARNTLSYAIL 171
+R R ++A+ ++ +D+ +A D+ + KA A V + LS +
Sbjct: 843 GGQRQRLMIAQALIRRPRILFFDEATSALDNETQRRVIESTKALNATRIVIAHRLSTVL- 901
Query: 172 LADADGVVVETLAEPGQVVSAGQPVVRLARTGER 205
DAD V+V E G+V G P LA TG R
Sbjct: 902 --DADRVIV---MEDGRVAQQGPPARLLADTGGR 930
>gi|2239176|emb|CAA72331| (Y11592) melanogenic peroxidase [Sepia
officinalis]
Length = 926
Score = 35.6 bits (80), Expect = 0.68
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 100 AQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQA 159
A A + VAAA A A A VA G + + + AAA +A AAEA
Sbjct: 129 AGATDTAVAAAAAAANAAAA-------AVAAGADAATIAEAAAAAAIAA-----AAEADI 176
Query: 160 DVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAI 219
+ N + A++ ADA G + +A QVV+A A T + + A
Sbjct: 177 EAVTNATAAAVIAADARGADADVIA---QVVAAAAAAAVNASTAGADDLAIAEAAAVAAA 233
Query: 220 GSLGQATLYGNPQAAVS 236
++ A + N AA +
Sbjct: 234 AAIETAIVTANATAAAA 250
>gi|6459396|gb|AAF11189.1|AE002006_2 (AE002006) c-di-GMP
phosphodiesterase A [Deinococcus radiodurans]
Length = 790
Score = 35.6 bits (80), Expect = 0.68
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 96 LGLQAQAQEETVAAARARAKQAVND-ERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKA 154
LG A+A+ A RA +ND E R R A+ + Y ALAQ++A
Sbjct: 297 LGRPAEARPALEAGLRAAQDLRLNDAEGRARRCYAQLLEDQDDYQ-------GALAQVRA 349
Query: 155 AEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPET 214
R L+ L +A+ + ETLAE ++ G+ RLA +A+ LP
Sbjct: 350 LAQLEHDLREQLAAVNLQLEAERLRSETLAEKRRLKEEGRTQQRLAAQLRHDALTGLPNR 409
Query: 215 L 215
L
Sbjct: 410 L 410
>gi|586725|sp|P37683|YIAV_ECOLI HYPOTHETICAL 41.8 KD PROTEIN IN
AVTA-SELB INTERGENIC REGION PRECURSOR
>gi|1073454|pir||S47807 hypothetical protein f378a -
Escherichia coli >gi|466724 (U00039) No definition line
found [Escherichia coli] >gi|1790012 (AE000436) putative
membrane protein [Escherichia coli]
Length = 378
Score = 35.6 bits (80), Expect = 0.68
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 120 DERRYRDLVAKGVVSTSAYDQ--IKAAADSAL----AQLKAAEAQADVARNTLSYAILLA 173
D R L + V +SA +Q I++ DS + +Q+ + +AQ A+ L I+ A
Sbjct: 165 DVARQNYLAQEASVKSSAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRA 224
Query: 174 DADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATL 227
+DG V + L PG +A P+ R +V++P+ R + Q +L
Sbjct: 225 PSDGYVTQVLIRPG-TYAASLPL--------RPVMVFIPDQKRQIVAQFRQNSL 269
>gi|321804|pir||JC1344 multidrug resistant protein emrA -
Escherichia coli >gi|145835 (M86657) multidrug
resistance; putative [Escherichia coli]
Length = 390
Score = 35.6 bits (80), Expect = 0.68
Identities = 44/195 (22%), Positives = 79/195 (39%), Gaps = 11/195 (5%)
Query: 60 QSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARA--KQA 117
Q + +VSG V K + D VK G L+++DP D QA + +T A+ R +
Sbjct: 61 QMQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTD-ARQAFEKAKTALASSVRQTHQLM 119
Query: 118 VNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADG 177
+N ++ ++ + + A A L E + AR+ ++ A A D
Sbjct: 120 INSKQLQANIEVQKIALAQAQSDYNRRVPLGNANLIGRE-ELQHARDAVTSA--QAQLDV 176
Query: 178 VVVETLAEPGQVVSA---GQPVVRLARTGEREAIVYLPET--LRPAIGSLGQATLYGNPQ 232
+ + A ++ QP V+ A T R A + L T + P G + + + Q
Sbjct: 177 AIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQ 236
Query: 233 AAVSARLRVLSNAAD 247
+ + L + A +
Sbjct: 237 ISPTTPLMAVVPATN 251
>gi|543652|pir||PN0667 peroxidase-like protein (clone pL07) - squid
(Euprymna scolopes) (fragment) >gi|159006 (L01771)
peroxidase-like protein [Euprymna scolopes]
Length = 894
Score = 35.2 bits (79), Expect = 0.89
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 95 DLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKA 154
D G+ A AAA A A+ A ++ VA G + +A I+A AD+A A
Sbjct: 75 DAGVAEAAGNTVAAAAAAAARAAGATDQGVAAAVAAGNAAAAA---IEAGADAATVAEAA 131
Query: 155 AE--------AQADVARNTLSYAILLADADGVVVETLAEPGQVVSA 192
A A A+ N + A+ A+A G + +AE V +A
Sbjct: 132 AAAAVAVVVGANAEAVNNATAAAVAAAEAVGADADVIAEVAAVAAA 177
>gi|2506508|sp|P27303|EMRA_ECOLI MULTIDRUG RESISTANCE PROTEIN A
>gi|1789041 (AE000353) multidrug resistance secretion
protein [Escherichia coli] >gi|1800070|dbj|BAA16547|
(D90891) multidrug resistant protein emrA [Escherichia
coli] >gi|1800076|dbj|BAA16552| (D90892) multidrug
resistant protein emrA [Escherichia coli]
Length = 390
Score = 35.2 bits (79), Expect = 0.89
Identities = 43/189 (22%), Positives = 77/189 (39%), Gaps = 11/189 (5%)
Query: 66 RVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARA--KQAVNDERR 123
+VSG V K + D VK G L+++DP D QA + +T A+ R + +N ++
Sbjct: 67 QVSGSVTKVWADNTDFVKEGDVLVTLDPTD-ARQAFEKAKTALASSVRQTHQLMINSKQL 125
Query: 124 YRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETL 183
++ + + A A L E + AR+ ++ A A D + +
Sbjct: 126 QANIEVQKIALAKAQSDYNRRVPLGNANLIGRE-ELQHARDAVTSA--QAQLDVAIQQYN 182
Query: 184 AEPGQVVSA---GQPVVRLARTGEREAIVYLPET--LRPAIGSLGQATLYGNPQAAVSAR 238
A ++ QP V+ A T R A + L T + P G + + + Q + +
Sbjct: 183 ANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPTTP 242
Query: 239 LRVLSNAAD 247
L + A +
Sbjct: 243 LMAVVPATN 251
>gi|3249003 (AF067776) extracellular matrix binding protein
[Abiotrophia defectiva]
Length = 2055
Score = 35.2 bits (79), Expect = 0.89
Identities = 49/181 (27%), Positives = 67/181 (36%), Gaps = 34/181 (18%)
Query: 103 QEETVAAAR------ARAKQAVNDERRYRDLVAKGVVSTSAYDQI------KAAADSALA 150
QEE AA R A+A+QA+ND D+ AK T A + + K AA +A+
Sbjct: 1203 QEEKEAAIRKVDEEAAKARQAINDATSNADVAAKQAQGTQAINNVPQTPAAKNAAKAAVE 1262
Query: 151 QLKAAEAQA-------------------DVARNTLSYAILLADADGVVVETLAEPGQVVS 191
Q A+ QA D N AI A + V E Q ++
Sbjct: 1263 QAADAKKQAIENDPNLTRQEKDAAIAKVDQETNKARQAIDAATTNADVTAKQNEGTQAIN 1322
Query: 192 AGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGN--PQAAVSARLRVLSNAADRV 249
A P A+T + A+ E + AI + T +A V A NA D
Sbjct: 1323 A-VPQTPKAKTDAKNAVTQAAEDKKSAIENDPNLTREEKDAAKAKVDAEATKAKNAIDAA 1381
Query: 250 T 250
T
Sbjct: 1382 T 1382
>gi|128505|sp|P25196|NOLF_RHIME NODULATION PROTEIN NOLF
>gi|95216|pir||S16562 nolF protein - Rhizobium meliloti
>gi|46333|emb|CAA41486| (X58632) nolF [Sinorhizobium
meliloti] >gi|228196|prf||1718309B nolF gene [Rhizobium
meliloti]
Length = 367
Score = 34.8 bits (78), Expect = 1.2
Identities = 55/234 (23%), Positives = 88/234 (37%), Gaps = 16/234 (6%)
Query: 40 AVQGAFATSRSFTGVVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLG-- 97
AV+ A G + +S L RVS ++L D G RGQ S P G
Sbjct: 49 AVRQDMANEVRIVGSLTPIRRSTLTSRVSRRLLTSCSDRG----RGQCRRSPRPFRKGSS 104
Query: 98 -LQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAAD--SALAQLKA 154
+ + A+ + A R L +G S + ++ A AD A +++
Sbjct: 105 RIGGDGAKSRGGCLSAQTELAEAVLERNTRLGERGAASEAT--RLAALADVLDLRAHVRS 162
Query: 155 AEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPET 214
+A+ A +LS+A + A+ GV+ E GQ V ++ + E +P +
Sbjct: 163 KQAEVSDAERSLSHAEVRAEFGGVIRARSVEEGQTVPLNTQLMTIVELNRLEVDAGVPTS 222
Query: 215 LRPAIGSLGQATLY-----GNPQAAVSARLRVLSNAADRVTRTYEARYVLEGAL 263
P I L G + AR+ ++A R R + A EG L
Sbjct: 223 RIPLIRLKQSVELMVEGFPGRTFSGEVARISPTADAGSRAVRVFIAVDNEEGLL 276
>gi|6460726|gb|AAF12431.1|AE001863_56 (AE001863) methyl-accepting
chemotaxis protein [Deinococcus radiodurans]
Length = 758
Score = 34.8 bits (78), Expect = 1.2
Identities = 30/135 (22%), Positives = 54/135 (39%), Gaps = 18/135 (13%)
Query: 36 VRVVAVQGAFATSR--SFTGVVAARVQS------------DLGFRVSGKVLKRFVDTGQI 81
+R +A A AT+R V A VQ + G+R++G +R D G++
Sbjct: 624 IRQLATTSAQATTRIAGLIKSVQAEVQDVIVEAEEGTREVEQGYRIAGSAGQRLQDIGEL 683
Query: 82 VKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQI 141
+R L + Q Q ++V A +Q +R V +G + + +
Sbjct: 684 TERSAQLAE----SIAASTQEQVQSVERVNAAVQQIAEVAQRSESAVQQGRSTAQQLEDL 739
Query: 142 KAAADSALAQLKAAE 156
D++LA+ + E
Sbjct: 740 ARQLDTSLARFRLPE 754
>gi|4206629 (AF067954) putative membrane fusion protein SilB
[Salmonella typhimurium]
Length = 430
Score = 34.4 bits (77), Expect = 1.5
Identities = 41/179 (22%), Positives = 72/179 (39%), Gaps = 9/179 (5%)
Query: 173 ADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQ--ATLYGN 230
A DGV+ G +S + V ++ +PE++ + Q ++
Sbjct: 220 APIDGVITAFDLRTGMNISKDKVVAQIQGMDPVWISAAVPESIAYLLKDTSQFEISVPAY 279
Query: 231 PQAAVSARLRVLSNAADRVTRTYEARYVL--EGALLHAPLGATVKVEIPDSTESISSLQV 288
P + + D+ TRT + R + + L + A +K+ +T+S L +
Sbjct: 280 PDKTFHVEKWNILPSVDQTTRTLQVRLQVTNKDEFLKPGMNAYLKL----NTQSQEMLLI 335
Query: 289 PIGALFDPGKGPGVWVIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLGAHLL 347
P A+ D GK V +D + K V + I VL + + + L GD VV G L+
Sbjct: 336 PSQAVIDTGKEQRVITVDDE-GKFVPKQIHVLHESQQQSGIGSGLNEGDTVVVSGLFLI 393
>gi|6460727|gb|AAF12432.1|AE001863_57 (AE001863) methyl-accepting
chemotaxis-related protein [Deinococcus radiodurans]
Length = 756
Score = 34.0 bits (76), Expect = 2.0
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 64 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERR 123
G+R++G +R D G++ +R L + Q Q ++V A +Q +R
Sbjct: 668 GYRIAGSAGQRLQDIGELTERSAQLAE----SIAASTQEQVQSVERVNAAVQQIAEVAQR 723
Query: 124 YRDLVAKGVVSTSAYDQIKAAADSALAQLK 153
V +G + + + D++LA+ +
Sbjct: 724 SESAVQQGRTAAQQLEDLARQLDTSLARFR 753
>gi|6714655|emb|CAB66177.1| (AL136500) putative TetR-family
transcriptional regulator. [Streptomyces coelicolor
A3(2)]
Length = 192
Score = 34.0 bits (76), Expect = 2.0
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 159 ADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAI--VYLPETLR 216
A+ R ++ A LA+ G T + + QPV+ G+RE I V L
Sbjct: 12 AERERLIVATARELAEQQGWDAVTTRRLAERIEYSQPVLYSHFRGKREIIGAVALQGATE 71
Query: 217 PAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEI 276
A+ P+A V A R A+R Y+A + L+G L +A + +
Sbjct: 72 MAVAMRAATAAADGPRARVHALARAYLAFAERNPAVYDAIFQLDGGLAYA------REDT 125
Query: 277 PDS-TESISSLQVPIGALFDPGKGPGVW 303
P+ ++ ++L +G + G PG++
Sbjct: 126 PEPLKDAFAALLESLGEVAGDGVEPGLF 153
>gi|117798|sp|P11091|CYAD_BORPE CYAD PROTEIN >gi|69562|pir||BVBRCD
cyaD protein - Bordetella pertussis
>gi|39734|emb|CAA32413| (X14199) cyaD [Bordetella
pertussis]
Length = 440
Score = 33.6 bits (75), Expect = 2.6
Identities = 42/147 (28%), Positives = 56/147 (37%), Gaps = 17/147 (11%)
Query: 79 GQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAY 138
G V QPLM + P G+Q QAQ ++ RA A V AY
Sbjct: 309 GTAVAATQPLMMVVPSGAGIQVQAQLDSKDIGFVRAG-------------APATVKVGAY 355
Query: 139 DQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVR 198
D K + + D R SY + +A A +E +P +++ G V
Sbjct: 356 DYTKYGTLEGKVLYVSPDTVVD-DRQQHSYRVTIALAH-PALEVDGKP-RLLKEGMAVQA 412
Query: 199 LARTGEREAIVY-LPETLRPAIGSLGQ 224
RTG R I Y L R A SLG+
Sbjct: 413 DIRTGSRRLIEYLLSPVARHAGESLGE 439
Score = 33.2 bits (74), Expect = 3.5
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 54/196 (27%)
Query: 54 VVAARVQSDLGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQA------------Q 101
V AA+ + D + + R +DTG+ P+++ P D G+ A Q
Sbjct: 138 VQAAQARQD---EARSRAMIRALDTGRA-----PVLAELPADPGMMAAQSYLDSQYADYQ 189
Query: 102 AQEETVAAARARAKQAVN----DERRYRDLVAKGVVSTSAY---DQIKAAADSALAQLK- 153
AQ ++ AA A ++ V +R L G VS AY +Q + + L Q +
Sbjct: 190 AQLRSIEAAIATYRRDVGLVTQIAHAHRGLRRDGDVSQQAYLEKEQARMTLEGRLRQSEA 249
Query: 154 -----------------------AAEAQADVARNTL--SYAILLADADGVVVETLA-EPG 187
AA+A+ ++AR + S +L A DGVV + +A G
Sbjct: 250 QRAALQTQTRRQAFETLVLARKLAAQAEQEIARTSAQRSRLVLTAPVDGVVQQLVALTEG 309
Query: 188 QVVSAGQPVVRLARTG 203
V+A QP++ + +G
Sbjct: 310 TAVAATQPLMMVVPSG 325
>gi|100855|pir||S11860 b-32 protein - maize >gi|22190|emb|CAA49723|
(X70154) protein b-32 [Zea mays]
Length = 302
Score = 33.6 bits (75), Expect = 2.6
Identities = 32/119 (26%), Positives = 48/119 (39%), Gaps = 14/119 (11%)
Query: 63 LGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQE-------ETVAAARARAK 115
+GFR G V F G L+ +P LG + Q+ ETV RA
Sbjct: 97 VGFRTPGGVWWEFGKAGDT-----HLLGDNPRWLGFGGRYQDLIGNKGLETVTMGRAEMT 151
Query: 116 QAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLAD 174
+AVND + + + Q+ AAD LA AA+ QAD + +++ +
Sbjct: 152 RAVNDLAKKKKMATLEEEEVQMQMQMPEAAD--LAAAAAADPQADTKSKLVKLVVMVCE 208
>gi|6136182|sp|O64204|VG11_BPMD2 GENE 11 PROTEIN (GP11) >gi|3172258
(AF022214) gp11 [Mycobacteriophage D29]
Length = 141
Score = 33.6 bits (75), Expect = 2.6
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 108 AAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLS 167
AAA A A VN +R+ G ++TS DQ+ + LA + AEA+ + + L
Sbjct: 50 AAAPATAAVKVNQQRK------DGTLTTSPVDQVTRGVEQVLAAKQNAEAEVERVKQALE 103
Query: 168 YAILLADADGVVVETLAEPGQVVSAGQP 195
A+ +G V + Q+++ QP
Sbjct: 104 SAV-----NGAVPQLGPLASQILNGIQP 126
>gi|6562784|emb|CAB62715.1| (AL133423) putative secreted protein
[Streptomyces coelicolor A3(2)]
Length = 1545
Score = 33.6 bits (75), Expect = 2.6
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 81 IVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQ 140
++K G+ +S +A A + AARA QA + +R A+ +A +Q
Sbjct: 607 MIKAGETALS------ATKASAGDSASIAARA-VTQAAGTQAAFRTAAAR-----AAKEQ 654
Query: 141 IKAAADSALAQLKAAEAQADVARNTLS 167
KAAAD+A Q A+A D A+ L+
Sbjct: 655 AKAAADAAAVQASNAKAARDTAKAKLT 681
>gi|1170699|sp|P30614|KPYK_YARLI PYRUVATE KINASE >gi|424047 (M86863)
pyruvate kinase [Yarrowia lipolytica]
Length = 542
Score = 33.2 bits (74), Expect = 3.5
Identities = 23/97 (23%), Positives = 43/97 (43%), Gaps = 2/97 (2%)
Query: 192 AGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTR 251
AG+PV+ T +++ Y P R + +G A L G +S + + V
Sbjct: 301 AGKPVI--CATQMLDSMTYNPRPTRAEVSDVGNAVLDGADCVMLSGETAKGTYPIESVKM 358
Query: 252 TYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQV 288
+E V E A+ +APL ++ TE++ ++ +
Sbjct: 359 MHETCLVAEKAIAYAPLFNEMRTLTVRPTETVETIAI 395
>gi|132584|sp|P25891|RIP3_MAIZE RIBOSOME-INACTIVATING PROTEIN 3
(RRNA N-GLYCOSIDASE) (B-32 PROTEIN) >gi|168451 (M83926)
ribosome-inactivating protein [Zea mays]
Length = 300
Score = 33.2 bits (74), Expect = 3.5
Identities = 32/119 (26%), Positives = 48/119 (39%), Gaps = 14/119 (11%)
Query: 63 LGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQE-------ETVAAARARAK 115
+GFR G V F G L+ +P LG + Q+ ETV RA
Sbjct: 96 VGFRTPGGVWWEFGKDGDT-----HLLGDNPRWLGFGGRYQDLIGNKGLETVTMGRAEMT 150
Query: 116 QAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLAD 174
+AVND + + + Q+ AAD LA AA+ QAD + +++ +
Sbjct: 151 RAVNDLAKKKKMATLEEEEVQMQMQMPEAAD--LAAAAAADPQADTKSKLVKLVVMVCE 207
>gi|132600|sp|P28522|RIPX_MAIZE RIBOSOME-INACTIVATING PROTEIN
PRECURSOR (RRNA N-GLYCOSIDASE) >gi|72361|pir||RLZMRI
ribosome-inactivating protein precursor - maize
>gi|168610 (M77122) ribosome-inactivating protein [Zea
mays]
Length = 301
Score = 33.2 bits (74), Expect = 3.5
Identities = 32/119 (26%), Positives = 48/119 (39%), Gaps = 14/119 (11%)
Query: 63 LGFRVSGKVLKRFVDTGQIVKRGQPLMSIDPIDLGLQAQAQE-------ETVAAARARAK 115
+GFR G V F G L+ +P LG + Q+ ETV RA
Sbjct: 96 VGFRTPGGVWWEFGKDGDT-----HLLGDNPRWLGFGGRYQDLIGNKGLETVTMGRAEMT 150
Query: 116 QAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLAD 174
+AVND + + + Q+ AAD LA AA+ QAD + +++ +
Sbjct: 151 RAVNDLAKKKKMATLEEEEVKMQMQMPEAAD--LAAAAAADPQADTKSKLVKLVVMVCE 207
>gi|101735|pir||JC1267 pyruvate kinase (EC 2.7.1.40) - yeast
(Yarrowia lipolytica)
Length = 527
Score = 33.2 bits (74), Expect = 3.5
Identities = 23/97 (23%), Positives = 43/97 (43%), Gaps = 2/97 (2%)
Query: 192 AGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTR 251
AG+PV+ T +++ Y P R + +G A L G +S + + V
Sbjct: 286 AGKPVI--CATQMLDSMTYNPRPTRAEVSDVGNAVLDGADCVMLSGETAKGTYPIESVKM 343
Query: 252 TYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQV 288
+E V E A+ +APL ++ TE++ ++ +
Sbjct: 344 MHETCLVAEKAIAYAPLFNEMRTLTVRPTETVETIAI 380
>gi|4115626|dbj|BAA36464.1| (AB015053) Membrane fusion protein (MFP)
[Pseudomonas fluorescens]
Length = 444
Score = 33.2 bits (74), Expect = 3.5
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 16/143 (11%)
Query: 79 GQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAY 138
G +V+ G+ L+ I P D L+ + + + V+ + +A+
Sbjct: 313 GAVVRAGETLLEIVPQDTRLEVEGRLPVHLVDKVGTHLPVD-------------ILFTAF 359
Query: 139 DQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVR 198
+Q + L +A+ D + + Y +L +E L G V+ G P
Sbjct: 360 NQSRTPRVPGEVSLISADQMLD-EKTGMPYYVLRTTVSSSALEKLH--GLVIKPGMPAEM 416
Query: 199 LARTGEREAIVYLPETLRPAIGS 221
RTGER + YL + L GS
Sbjct: 417 FIRTGERSLLNYLFKPLLDRAGS 439
>gi|135978|sp|P19934|TOLA_ECOLI TOLA PROTEIN >gi|78890|pir||JV0057
tolA protein - Escherichia coli >gi|148019 (M28232) tolA
[Escherichia coli] >gi|1651331|dbj|BAA35405| (D90713)
TolA protein. [Escherichia coli] >gi|1786960 (AE000177)
membrane spanning protein, required for outer membrane
integrity [Escherichia coli]
Length = 421
Score = 32.8 bits (73), Expect = 4.5
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 98 LQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEA 157
L+ +A+ AAA AR K A + + K + A KAAA+ A A KAAE
Sbjct: 193 LKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAAEKAAADKKAAEK 252
Query: 158 QA 159
A
Sbjct: 253 AA 254
>gi|1169365|sp|P46388|DNAA_MYCLE CHROMOSOMAL REPLICATION INITIATOR
PROTEIN DNAA >gi|886325 (L39923) chromosomal replication
initiator protein [Mycobacterium leprae]
Length = 521
Score = 32.8 bits (73), Expect = 4.5
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 121 ERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILL---ADADG 177
ER R+L + T+ K A D ALA++ + AD + +S A ++ A+
Sbjct: 380 ERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTATAEYFD 439
Query: 178 VVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRP-AIGSLGQATLYGNPQAAVS 236
+E L PG+ + Q R+ +YL L ++ +GQA +G V
Sbjct: 440 TTIEELRGPGKTRALAQ---------SRQIAMYLCRELTDLSLPKIGQA--FGRDHTTVM 488
Query: 237 -ARLRVLSNAADR 248
A+ ++LS A+R
Sbjct: 489 YAQRKILSEMAER 501
>gi|1262352|emb|CAA94708| (Z70722) DnaA [Mycobacterium leprae]
Length = 198
Score = 32.8 bits (73), Expect = 4.5
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 121 ERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILL---ADADG 177
ER R+L + T+ K A D ALA++ + AD + +S A ++ A+
Sbjct: 57 ERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTATAEYFD 116
Query: 178 VVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRP-AIGSLGQATLYGNPQAAVS 236
+E L PG+ + Q R+ +YL L ++ +GQA +G V
Sbjct: 117 TTIEELRGPGKTRALAQ---------SRQIAMYLCRELTDLSLPKIGQA--FGRDHTTVM 165
Query: 237 -ARLRVLSNAADR 248
A+ ++LS A+R
Sbjct: 166 YAQRKILSEMAER 178
>gi|2688026 (AE001125) membrane fusion protein (mtrC) [Borrelia
burgdorferi]
Length = 318
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 13 LLPLALTAC-GNNHAPDPRTEA--------PLVRVVAVQGAFATSRSFTGVVAARVQSDL 63
+L L L AC G+N D + P++ + +G + S G V +V++D+
Sbjct: 18 VLFLVLVACVGDNKLDDKNIDKEKESSYRFPVIAMKVKKGILSDYLSLNGDVDTKVKADI 77
Query: 64 GFRVSGKVLKRFVDTGQIVKRGQPLMSIDP 93
GK+ + G V++GQ + ++DP
Sbjct: 78 FPDAVGKITSLRIKLGAYVQKGQIVATLDP 107
>gi|4958991|gb|AAD34204.1|AF068743_3 (AF068743) lipoate
acetyl-transferase E2 [Haloferax volcanii]
Length = 496
Score = 32.8 bits (73), Expect = 4.5
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 10/76 (13%)
Query: 146 DSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGER 205
D LA+++ +A DV + DG V E LAE G+VV G ++ + G+
Sbjct: 34 DQVLAEVETDKALVDVP----------SPFDGTVKELLAEEGEVVPVGDVIITIQEDGDD 83
Query: 206 EAIVYLPETLRPAIGS 221
E + A GS
Sbjct: 84 EEAAEAADADAEAAGS 99
>gi|6458125|gb|AAF10021.1|AE001903_9 (AE001903)
pyrimidine-nucleoside phosphorylase [Deinococcus
radiodurans]
Length = 478
Score = 32.8 bits (73), Expect = 4.5
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 102 AQEETVAAARARAKQAVNDER---RYRDLVA-KGVVSTSAYDQIKAAADSALAQLKAAEA 157
A E A ARA+Q ++D ++R VA +G + D + A++ AA++
Sbjct: 328 AHGEDAGQAEARARQTLHDGSALAKFRAFVAAQGGDPSYVDDPERLDVAPGRAEMLAAQS 387
Query: 158 QADVARNTLSY--AILL----------ADADGVVVETLAEPGQVVSAGQPVVRLARTGER 205
+ LS A+L A GV VE L +PG+ V AG+ V+RL G R
Sbjct: 388 GFVTRVDALSVGRAVLALGGGRERKGEAIDHGVGVELLKKPGEAVGAGEAVLRLYHRGGR 447
>gi|6900373|emb|CAB71985.1| (AJ391256) hypothetical protein
[Neisseria meningitidis]
Length = 519
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/78 (29%), Positives = 37/78 (46%), Gaps = 11/78 (14%)
Query: 169 AILLADADGVVVE-------TLAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGS 221
A+ A+++GV V L+ G+++ GQ + A G+ + LPE + P +
Sbjct: 415 ALQTAESEGVKVAPLSYRRVALSRQGEILDMGQAAIDNAGLGK----IALPEHIEPFLRG 470
Query: 222 LGQATLYGNPQAAVSARL 239
LGQA G+ V RL
Sbjct: 471 LGQALAEGDSYEEVQERL 488
>gi|1781106|emb|CAB06216| (Z83864) hypothetical protein Rv3850
[Mycobacterium tuberculosis]
Length = 218
Score = 32.5 bits (72), Expect = 5.9
Identities = 25/60 (41%), Positives = 32/60 (52%), Gaps = 7/60 (11%)
Query: 109 AARARAK-----QAVNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVAR 163
A +ARAK A N+ RR + A+ S + Q+KA DS A LK AEA+ VAR
Sbjct: 19 AIKARAKLEAKLSAKNEARRIK--AAQRAESKALKAQLKARRDSDRAALKVAEAELKVAR 76
>gi|6689246|emb|CAB65411.1| (AJ243529) M-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae]
Length = 548
Score = 32.5 bits (72), Expect = 5.9
Identities = 47/192 (24%), Positives = 83/192 (42%), Gaps = 14/192 (7%)
Query: 101 QAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAYDQIKAAADSAL-------AQLK 153
+A T+A +A ++ +D LV G S + KA AD+AL A+LK
Sbjct: 313 EAANATIAELQAEVEKVKSDLANANQLVEAGKRDLSDLAKAKADADAALVASEAKVAELK 372
Query: 154 AAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVRLARTGEREAIVYLPE 213
A+A+++ L A+ A + V+ E V+ V+ + I L +
Sbjct: 373 KAKAESEAKVAKLESAVTAAKEEVAKVKAELE---TVTKDLEAVKAEKANLEAQIADLKK 429
Query: 214 TLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVTRTYEARYVLEGALLHAPLGATVK 273
I L +AT+ + ++A+++ A + ++ +A + E L A L A +K
Sbjct: 430 AHAEKIAEL-EATI-KRLEEELAAKVKEF-EALENTSKEEKANFQKEIDRLKAELAAKIK 486
Query: 274 VEIPDSTESISS 285
+I ST+ SS
Sbjct: 487 -DITKSTKVGSS 497
>gi|4501841|ref|NP_001596.1|| alanyl-tRNA synthetase
>gi|1351144|sp|P49588|SYA_HUMAN ALANYL-TRNA SYNTHETASE
(ALANINE--TRNA LIGASE) (ALARS) >gi|1015321|dbj|BAA06808|
(D32050) alanyl-tRNA synthetase [Homo sapiens]
Length = 968
Score = 32.1 bits (71), Expect = 7.8
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 118 VNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADG 177
V +R D AKG +ST QIK A + A ++AA+A L+ A +
Sbjct: 629 VAPDRLRFDFTAKGAMSTQ---QIKKAEEIANEMIEAAKA-VYTQDCPLAAAKAIQGLRA 684
Query: 178 VVVETLAEPGQVVSAGQPVVRL 199
V ET +P +VVS G PV L
Sbjct: 685 VFDETYPDPVRVVSIGVPVSEL 706
>gi|1731058|sp|P54527|YQIK_BACSU HYPOTHETICAL 27.0 KD PROTEIN IN
SPO0A-MMGA INTERGENIC REGION >gi|1303930|dbj|BAA12586|
(D84432) YqiK [Bacillus subtilis]
>gi|2634852|emb|CAB14349| (Z99116) similar to
glycerophosphodiester phosphodiesterase [Bacillus
subtilis]
Length = 239
Score = 32.1 bits (71), Expect = 7.8
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 118 VNDERRYRDLVAKGVVSTSAYDQIKAAADSALAQLKAAEAQADVARNTLSYAI 170
++DER R KG V +AYD++K A +A ++ + + + LS+A+
Sbjct: 48 IHDERLNRTTSLKGFVKDTAYDEVKTANAAAGHDQAYSDIKVPLLEDVLSWAV 100
>gi|3122010|sp|P94317|DNAK_BRAJA DNAK PROTEIN (HEAT SHOCK PROTEIN
70) (HSP70)
Length = 633
Score = 32.1 bits (71), Expect = 7.8
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 34/137 (24%)
Query: 126 DLVAKGVVSTSAYD-------QIKAAADSALAQ------LKAAEAQADVARNTLSYAILL 172
D+ A G+V+ SA D QI+ A L++ +K AEA A+ +
Sbjct: 472 DIDANGIVNVSAKDKATGKEQQIRIQASGGLSEADIEKMVKDAEANAEADKKRREAVTAK 531
Query: 173 ADADGVVVET---LAEPGQVVSAGQPVVRLARTGEREAIVYLPETLRPAIGSLGQATLYG 229
+ADG+V T LAE G ++A T ER AI A+ L +A L G
Sbjct: 532 NEADGLVHSTEKALAEHGS---------KVAET-ERRAI-------EDAVSDLKEA-LKG 573
Query: 230 NPQAAVSARLRVLSNAA 246
+ A+ A+ + L+ A+
Sbjct: 574 DDAEAIKAKTQTLAQAS 590
>gi|2983606 (AE000725) cation efflux system (czcB-like) [Aquifex
aeolicus]
Length = 444
Score = 32.1 bits (71), Expect = 7.8
Identities = 59/281 (20%), Positives = 108/281 (37%), Gaps = 66/281 (23%)
Query: 79 GQIVKRGQPLMSIDPIDLGLQAQAQEETVAAARARAKQAVNDERRYRDLVAKGVVSTSAY 138
G+ VK+G PLM + D+ +A + + + DE+ ++ + K
Sbjct: 198 GEYVKKGTPLMKVLSPDI---------EIAKREYKLAKKIGDEKLIKEALRK-------- 240
Query: 139 DQIKAAADSALAQLKAAEAQADVARNTLSYAILLADADGVVVETLAEPGQVVSAGQPVVR 198
L LKA +++ + DGV+++ G + GQ R
Sbjct: 241 ----------LRYLKAG-------------SVVRSPVDGVILQKQVYEGGYLKEGQTAYR 277
Query: 199 LARTGEREAIV--------YLPETLRPAIGSLGQATLYGNPQAAVSARLRVLSNAADRVT 250
+A + Y+ + L+ + G +T + A + + ++++
Sbjct: 278 IADLSTAWIVAEVPLHFSSYIRKGLKAFVSPEGDSTQF-------QATVDYIFPEVNKLS 330
Query: 251 RTYEARYVLEGALLHAPLGATVKV--EIPDSTESISSLQVPIGALFDPGKGPGVWVIDGK 308
RT + R L+ L A V V E+P + VP A+ D G+ V+V +
Sbjct: 331 RTLKVRLKLKNENLTFKPNALVNVSFEVPIG----EVIAVPESAVVDTGRRRFVFV---E 383
Query: 309 PAKAVWRSIKV-LGLT-DDVAQVKGNLKVGDQVVSLGAHLL 347
K ++ ++V LG + +V LK G +VV G LL
Sbjct: 384 MEKGMYMPVQVKLGRRGEGYYEVIHGLKEGQRVVVKGTFLL 424
>gi|4972055|emb|CAB43923.1| (AL078470) putative protein [Arabidopsis
thaliana]
Length = 575
Score = 32.1 bits (71), Expect = 7.8
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 240 RVLSNAADRVTRTYEARYVLEGALLHAPLGATVKVEIPDSTESISSLQVPIGALFDPGKG 299
R+LS + + +++RY + L+APLG+ S L+ A+ G+
Sbjct: 75 RMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGED 134
Query: 300 PGVW---VIDGKPAKAVWRSIKVLGLTDDVAQVKGNLKVGDQVVSLG 343
+W +D KPA A R +V + A V LKV D + G
Sbjct: 135 IIIWRHKWLDSKPASAALRMQRV--PPQEYASVSSILKVSDLIDESG 179
Database: nr
Posted date: Feb 20, 2000 12:20 AM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.317 0.133 0.369
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88928005
Number of Sequences: 457798
Number of extensions: 3463400
Number of successful extensions: 9434
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 9315
Number of HSP's gapped (non-prelim): 134
length of query: 368
length of database: 140,871,481
effective HSP length: 60
effective length of query: 308
effective length of database: 113,403,601
effective search space: 34928309108
effective search space used: 34928309108
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)