BLASTP 2.0.10 [Aug-26-1999]
Query= XF-07C01E-GL04
(135 letters)
Database: nr
457,798 sequences; 140,871,481 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|6960334|gb|AAF33494.1| (AF170176) 96% identity over 127 amin... 70 1e-11
gi|3810893|dbj|BAA34065| (AB016766) preprotein translocase SecE... 69 1e-11
gi|134400|sp|P16920|SECE_ECOLI PREPROTEIN TRANSLOCASE SECE SUBU... 67 9e-11
gi|1173415|sp|P43805|SECE_HAEIN PREPROTEIN TRANSLOCASE SECE SUB... 50 1e-05
gi|849061|dbj|BAA09300| (D50624) SecE like protein [Streptomyce... 40 0.011
gi|1711365|sp|P36691|SECE_STRVG PREPROTEIN TRANSLOCASE SECE SUB... 40 0.011
gi|3024607|sp|P96929|SECE_MYCTU PROBABLE PREPROTEIN TRANSLOCASE... 37 0.070
gi|585980|sp|P38382|SECE_SYNY3 PREPROTEIN TRANSLOCASE SECE SUBU... 36 0.16
gi|1711364|sp|P36690|SECE_STRGR PREPROTEIN TRANSLOCASE SECE SUB... 36 0.16
gi|541484|pir||S41060 secE protein - Streptomyces griseus >gi|4... 36 0.16
gi|1711363|sp|P52853|SECE_STRGB PREPROTEIN TRANSLOCASE SECE SUB... 36 0.16
gi|1711361|sp|P50054|SECE_RICPR PREPROTEIN TRANSLOCASE SECE SUB... 36 0.21
gi|6094266|sp|O83263|SECE_TREPA PREPROTEIN TRANSLOCASE SECE SUB... 36 0.21
gi|6459840|gb|AAF11598.1|AE002041_2 (AE002041) preprotein trans... 35 0.27
gi|4980550|gb|AAD35157.1|AE001693_3 (AE001693) hypothetical pro... 35 0.35
gi|585981|sp|P38383|SECE_THETH PREPROTEIN TRANSLOCASE SECE SUBUNIT 35 0.35
gi|548912|sp|P36253|SECE_STACA PREPROTEIN TRANSLOCASE SECE SUBU... 34 0.60
gi|290597 (L10328) o519 [Escherichia coli] >gi|1790187 (AE00045... 33 1.4
gi|267165|sp|P30016|KUP_ECOLI KUP SYSTEM POTASSIUM UPTAKE PROTE... 33 1.4
gi|548915|sp|P35874|SECE_THEMA PREPROTEIN TRANSLOCASE SECE SUBU... 33 1.4
gi|1711362|sp|P50055|SECE_STRCO PREPROTEIN TRANSLOCASE SECE SUB... 32 1.8
gi|2632414|emb|CAB11923| (Z99104) ybaF [Bacillus subtilis] 32 1.8
gi|6967943|emb|CAB75110.1| (AL139075) preprotein translocase Se... 31 4.0
gi|2181941|emb|CAA69144.1| (Y07814) apocytochrome b [Chlorogoni... 31 5.2
gi|4155791 (AE001545) NADH oxidoreductase I [Helicobacter pylor... 31 5.2
gi|1730627|sp|Q10947|YMP3_CAEEL HYPOTHETICAL 139.9 KD PROTEIN B... 31 6.9
gi|3914964|sp|O51356|SECE_BORBU PREPROTEIN TRANSLOCASE SECE SUB... 31 6.9
gi|5852392|gb|AAD54052.1|AF105019_31 (AF105019) TrhL [Salmonell... 30 9.0
gi|6650383|gb|AAF21812.1|AF097740_1 (AF097740) multiple resista... 30 9.0
gi|6899589|gb|AAF30994.1|AE002156_9 (AE002156) unique hypotheti... 30 9.0
>gi|6960334|gb|AAF33494.1| (AF170176) 96% identity over 127 amino
acids with E. coli protein-export protein (SECE)
(SW:P16920); contains similarity to Pfam domain PF00584
(SecE), Score=96.3, E=6,2e-25, N=1 [Salmonella
typhimurium LT2]
Length = 127
Score = 69.9 bits (168), Expect = 1e-11
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Query: 16 DIFKYFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLVFVAAVSVLMTTAKG 75
+ K+ + ++LL++ + +L+ D ++ LR L V+++ AA V + T KG
Sbjct: 15 EAMKWIVVAILLIVAIVGNYLYR---DMML------PLRALAVVILIAAAGGVALLTTKG 65
Query: 76 REFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 131
+ F E+R E+RKV+WPTRQE + T +V + ++SL+L G D ++ +L +
Sbjct: 66 KATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSF 121
>gi|3810893|dbj|BAA34065| (AB016766) preprotein translocase SecE
subunit [Vibrio alginolyticus]
Length = 126
Score = 69.5 bits (167), Expect = 1e-11
Identities = 39/115 (33%), Positives = 64/115 (54%), Gaps = 9/115 (7%)
Query: 14 SGDIFKYFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLVFVAAVSVLMTTA 73
+ D FK+ A +L V +L+ G + +R V+++ AA+ V TT
Sbjct: 14 AADTFKWLAAFVLAAAAVVGNYLY---------GEMSVVVRAAGVVVLIAAALGVAATTT 64
Query: 74 KGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 128
KG+ F ESR E+RKVVWPTRQE ++ T +V+ + +++L+L G D ++ +L
Sbjct: 65 KGKAAISFAKESRMEVRKVVWPTRQETMQTTLIVLAVSIVMALVLWGIDGIMVRL 119
>gi|134400|sp|P16920|SECE_ECOLI PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|73082|pir||VXECSE protein-export protein secE -
Escherichia coli >gi|147800 (M30610) secE protein
[Escherichia coli] >gi|396320 (U00006) secE [Escherichia
coli] >gi|1790413 (AE000472) preprotein translocase
[Escherichia coli]
Length = 127
Score = 66.7 bits (160), Expect = 9e-11
Identities = 31/79 (39%), Positives = 49/79 (61%)
Query: 53 LRGLVVMLVFVAAVSVLMTTAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMIT 112
LR L V+++ AA V + T KG+ F E+R E+RKV+WPTRQE + T +V +
Sbjct: 43 LRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA 102
Query: 113 ILSLLLGGFDFVIQKLTQW 131
++SL+L G D ++ +L +
Sbjct: 103 VMSLILWGLDGILVRLVSF 121
>gi|1173415|sp|P43805|SECE_HAEIN PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1075165|pir||F64088 preprotein translocase (secE)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573718 (U32754) preprotein translocase SecE subunit
(secE) [Haemophilus influenzae Rd]
Length = 106
Score = 49.6 bits (116), Expect = 1e-05
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 53 LRGLVVMLVFVAAVSVLMTTAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMIT 112
+R + + + V A + T +G + R F +SR E RKVVWPTR EA + T +VI +
Sbjct: 22 IRVIGMAIALVIAFILAAITNQGTKARAFFNDSRTEARKVVWPTRAEARQTTLIVIGVTM 81
Query: 113 ILSLLLGGFDFVI 125
I SL D +I
Sbjct: 82 IASLFFWAVDSII 94
>gi|849061|dbj|BAA09300| (D50624) SecE like protein [Streptomyces
virginiae]
Length = 121
Score = 39.9 bits (91), Expect = 0.011
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQK 127
ELRKVVWPTR + T VVIV + I+ L+ DF +K
Sbjct: 75 ELRKVVWPTRNQLTTYTTVVIVFVVIMIGLVTVIDFGFEK 114
>gi|1711365|sp|P36691|SECE_STRVG PREPROTEIN TRANSLOCASE SECE SUBUNIT
Length = 93
Score = 39.9 bits (91), Expect = 0.011
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQK 127
ELRKVVWPTR + T VVIV + I+ L+ DF +K
Sbjct: 47 ELRKVVWPTRNQLTTYTTVVIVFVVIMIGLVTVIDFGFEK 86
>gi|3024607|sp|P96929|SECE_MYCTU PROBABLE PREPROTEIN TRANSLOCASE
SECE SUBUNIT >gi|1877376|emb|CAB07097| (Z92772) secE
[Mycobacterium tuberculosis]
Length = 161
Score = 37.1 bits (84), Expect = 0.070
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 128
E+RKV+WP R++ + T VV+ + + L+ G D + KL
Sbjct: 115 EMRKVIWPNRKQMLTYTSVVLAFLAFMVALVAGADLGLTKL 155
>gi|585980|sp|P38382|SECE_SYNY3 PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1652500|dbj|BAA17421| (D90906) secretory protein
SecE [Synechocystis sp.]
Length = 81
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 81 FLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQ 130
F+ ++ EL KVVWP+RQ+ I + VI+M+ ++S ++ D + +T+
Sbjct: 26 FIAATKDELAKVVWPSRQQLISESVAVILMVILVSTVIYFVDQIFGWITK 75
>gi|1711364|sp|P36690|SECE_STRGR PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|603588|emb|CAA51295| (X72787) secretory protein SecE
[Streptomyces griseus]
Length = 95
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/44 (38%), Positives = 26/44 (58%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 131
ELRKVVWPTR + T VVIV + ++ L+ D ++ ++
Sbjct: 49 ELRKVVWPTRSQLTTYTSVVIVFVVVMIGLVTVLDIGFARVVKY 92
>gi|541484|pir||S41060 secE protein - Streptomyces griseus
>gi|483835|dbj|BAA04280| (D17464) SecE [Streptomyces
griseus]
Length = 86
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/44 (38%), Positives = 26/44 (58%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQW 131
ELRKVVWPTR + T VVIV + ++ L+ D ++ ++
Sbjct: 40 ELRKVVWPTRSQLTTYTSVVIVFVVVMIGLVTVLDMGFARVVKY 83
>gi|1711363|sp|P52853|SECE_STRGB PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1213237|emb|CAA65164.1| (X95916) membrane
translocase [Streptomyces galbus]
Length = 94
Score = 36.0 bits (81), Expect = 0.16
Identities = 17/36 (47%), Positives = 22/36 (60%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDF 123
ELRKVVWPTR + T VVI + I+ L+ D+
Sbjct: 48 ELRKVVWPTRNQLTSYTTVVIFFVAIMIRLVTVIDY 83
>gi|1711361|sp|P50054|SECE_RICPR PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|987967|emb|CAA90885| (Z54171) SecE protein
[Rickettsia prowazekii] >gi|3860701|emb|CAA14602|
(AJ235270) unknown (secE) [Rickettsia prowazekii]
Length = 66
Score = 35.6 bits (80), Expect = 0.21
Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 76 REFRGFLF--ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQWFL 133
RE++ + F + + E KV WP ++E I T VV+ + I SL+ D+ I + Q L
Sbjct: 3 REYKIYKFFEQVKQETYKVFWPNKKELIASTLVVVATVFIFSLICLVLDYSIHNIMQLLL 62
Query: 134 S 134
+
Sbjct: 63 T 63
>gi|6094266|sp|O83263|SECE_TREPA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|3322505 (AE001205) preprotein translocase subunit
(secE) [Treponema pallidum]
Length = 59
Score = 35.6 bits (80), Expect = 0.21
Identities = 19/56 (33%), Positives = 28/56 (49%)
Query: 77 EFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQWF 132
+F F E E R+VVWP R + VV+V +++L LG D + L +F
Sbjct: 3 KFAKFRRECVAEFRRVVWPARTQVHTAVKVVLVSTVVMALFLGLIDALFVALLSFF 58
>gi|6459840|gb|AAF11598.1|AE002041_2 (AE002041) preprotein
translocase, SecE subunit [Deinococcus radiodurans]
Length = 61
Score = 35.2 bits (79), Expect = 0.27
Identities = 13/41 (31%), Positives = 26/41 (62%)
Query: 84 ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFV 124
++R EL +V WP+RQ+ + T V++ + L+L++ D +
Sbjct: 9 DAREELSRVTWPSRQDVLEGTQAVLIFVVALTLIVWALDLL 49
>gi|4980550|gb|AAD35157.1|AE001693_3 (AE001693) hypothetical protein
[Thermotoga maritima]
Length = 148
Score = 34.8 bits (78), Expect = 0.35
Identities = 32/109 (29%), Positives = 48/109 (43%), Gaps = 14/109 (12%)
Query: 17 IFKYFIASLLL----VLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLVFVAAVSVLMTT 72
IF Y +A L L VLG +V F+ R F +LG + +L+ + AV +
Sbjct: 4 IFNYVLAYLFLAVTSVLGFYVIFMEGRRFFFTLLGLTSARLQ-------TINAVDKFVVI 56
Query: 73 AKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGF 121
G F GF S RK V + ++ +R V+ + IL + GF
Sbjct: 57 VLGIAFLGFFIFSESYFRKKVESSMKDLLR---AVLTVSGILMFVWAGF 102
>gi|585981|sp|P38383|SECE_THETH PREPROTEIN TRANSLOCASE SECE SUBUNIT
Length = 60
Score = 34.8 bits (78), Expect = 0.35
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 84 ESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 128
E+R EL +V WPTR++ + T +++ + LG +D V + L
Sbjct: 11 EARAELARVTWPTREQVVEGTQAILLFTLAFMVYLGLYDTVFRFL 55
>gi|548912|sp|P36253|SECE_STACA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|487094|pir||S38869 protein-export protein secE -
Staphylococcus carnosus >gi|426472|emb|CAA53737|
(X76134) secE [Staphylococcus carnosus]
Length = 65
Score = 34.0 bits (76), Expect = 0.60
Identities = 14/43 (32%), Positives = 23/43 (52%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLTQ 130
E+ K WPT++E ++ T +VIV + + D I KL +
Sbjct: 20 EMEKTSWPTKEEILKYTTIVIVTVVFFLIFFYALDLGIGKLIE 62
>gi|290597 (L10328) o519 [Escherichia coli] >gi|1790187 (AE000451)
low affinity potassium transport system [Escherichia
coli]
Length = 519
Score = 32.8 bits (73), Expect = 1.4
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 19 KYFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLVFVAAVSVLMTTAKGREF 78
KYF+A +L+ LF+ +D L+ G W P G V+ +V MTT K F
Sbjct: 394 KYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIV--------MTTWKSERF 445
Query: 79 R 79
R
Sbjct: 446 R 446
>gi|267165|sp|P30016|KUP_ECOLI KUP SYSTEM POTASSIUM UPTAKE PROTEIN
>gi|538769|pir||A49345 K(+)-uptake protein - Escherichia
coli >gi|41888|emb|CAA48555| (X68551) Kup protein
[Escherichia coli]
Length = 622
Score = 32.8 bits (73), Expect = 1.4
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 19 KYFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLVFVAAVSVLMTTAKGREF 78
KYF+A +L+ LF+ +D L+ G W P G V+ +V MTT K F
Sbjct: 394 KYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIV--------MTTWKSERF 445
Query: 79 R 79
R
Sbjct: 446 R 446
>gi|548915|sp|P35874|SECE_THEMA PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|407023|emb|CAA77865| (Z11839) SecE [Thermotoga
maritima] >gi|4980958|gb|AAD35535.1|AE001723_5
(AE001723) preprotein translocase SecE subunit
[Thermotoga maritima]
Length = 65
Score = 32.8 bits (73), Expect = 1.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 77 EFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFV 124
+ R F E E +K+ WP+R+E + VV+V++ + S+ DF+
Sbjct: 3 KLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFI 50
>gi|1711362|sp|P50055|SECE_STRCO PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|1084257|pir||S54716 secE protein - Streptomyces
coelicolor >gi|971287|dbj|BAA06984| (D32254) secE
[Streptomyces coelicolor] >gi|3493238 (AF071013) protein
translocase [Streptomyces lividans]
Length = 94
Score = 32.5 bits (72), Expect = 1.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 88 ELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDF 123
++RKVVWP+R + T VVI+ + I+ L+ D+
Sbjct: 48 DVRKVVWPSRNQLTTYTTVVIIFVVIMIGLVTLIDY 83
>gi|2632414|emb|CAB11923| (Z99104) ybaF [Bacillus subtilis]
Length = 265
Score = 32.5 bits (72), Expect = 1.8
Identities = 28/108 (25%), Positives = 50/108 (45%), Gaps = 4/108 (3%)
Query: 7 PIKSTVLSGDIFKYFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLV--FVA 64
P+ L I FI +L+ + +R VDF G +++ +V +LV FV+
Sbjct: 153 PVHELALMMSISLRFIPTLMEETDKIMKAQMARGVDFTS-GPVKERVKAIVPLLVPLFVS 211
Query: 65 AVSVLMTTAKGREFRGFLF-ESRFELRKVVWPTRQEAIRITWVVIVMI 111
A A E RG+ E R + RK+VW + ++ ++ +V+ +
Sbjct: 212 AFKRAEELAVAMEARGYQGGEGRTKYRKLVWTGKDTSVIVSLIVLAAL 259
>gi|6967943|emb|CAB75110.1| (AL139075) preprotein translocase SecE
subunit [Campylobacter jejuni]
Length = 59
Score = 31.3 bits (69), Expect = 4.0
Identities = 13/44 (29%), Positives = 27/44 (60%)
Query: 85 SRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKL 128
S+ ELRKV++P +++ V V++ ++SL L D+++ +
Sbjct: 11 SKAELRKVIFPLKEQVRNAYITVFVVVAVISLFLALVDWLMSSI 54
>gi|2181941|emb|CAA69144.1| (Y07814) apocytochrome b [Chlorogonium
elongatum]
Length = 385
Score = 30.9 bits (68), Expect = 5.2
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 55 GLVVMLVFVAAVSVLMTTAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITIL 114
G+++ S+ T FRG + S + R++VW IT VVI+++ I+
Sbjct: 75 GMILRYTHANGASLFFTVVYLHTFRGIYYSSGNQPRELVW--------ITGVVILLVMII 126
Query: 115 SLLLG 119
+ +G
Sbjct: 127 TAFIG 131
>gi|4155791 (AE001545) NADH oxidoreductase I [Helicobacter pylori
J99]
Length = 133
Score = 30.9 bits (68), Expect = 5.2
Identities = 19/49 (38%), Positives = 28/49 (56%), Gaps = 5/49 (10%)
Query: 20 YFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLVFVAAVSV 68
Y +A L ++ V + F+F A+DF LG L GLV ML FV +++
Sbjct: 71 YIMAMLFILFDVEIVFMFPWAIDFKKLG-----LFGLVEMLGFVFFLAI 114
>gi|1730627|sp|Q10947|YMP3_CAEEL HYPOTHETICAL 139.9 KD PROTEIN
B0361.3 IN CHROMOSOME III >gi|458951|gb|AAA50622.1|
(U00031) contains transmembrane regions similar to those
in E. coli tetracycline resistance protein and arabinose
transporter [Caenorhabditis elegans]
Length = 1222
Score = 30.5 bits (67), Expect = 6.9
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 18 FKYFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLR-------GLVVMLVFVAAVSVLM 70
++YFI SL V G +W+ + +L+ + +L+ +V+ LV+ A+S +
Sbjct: 261 WRYFIVSLPGVYGFALWYFLPESPHWLITKNKTEKLKKYIKTANRMVISLVYF-AISFMS 319
Query: 71 TTAKGREFRGFLFESRFEL 89
G + + FL+ S E+
Sbjct: 320 VELGGDQVQAFLYSSLIEI 338
>gi|3914964|sp|O51356|SECE_BORBU PREPROTEIN TRANSLOCASE SECE SUBUNIT
>gi|2688302 (AE001145) preprotein translocase subunit
(secE) [Borrelia burgdorferi]
Length = 56
Score = 30.5 bits (67), Expect = 6.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 81 FLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVI 125
F+ +S EL+KV WP E + V ++ +S+ LG D+++
Sbjct: 4 FIKDSILELKKVTWPKYNEVVGNGKQVFWLVLFVSIFLGIVDYLM 48
>gi|5852392|gb|AAD54052.1|AF105019_31 (AF105019) TrhL [Salmonella
typhi]
Length = 116
Score = 30.1 bits (66), Expect = 9.0
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 11 TVLSGDIFKYFIASLLLVLGVFVWFLFSRAVD 42
T+ SG+IF +FI S +V+ V WF + +A +
Sbjct: 49 TIASGNIFDFFITS--VVVAVVFWFAYKKAAE 78
>gi|6650383|gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance
and pH regulation related protein A [Bacillus firmus]
Length = 805
Score = 30.1 bits (66), Expect = 9.0
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 8 IKSTVLSGDIFKYFIASLLLVLGVFVWFLFSRAVDFLMLGSWAPQLRGLVVMLVFVAA-- 65
I+ T L D F Y I ++L+LG ++ + A+D + AP + V+ +VF+ A
Sbjct: 588 IQMTGLLRDYFAYMIVFMILLLGYTMFRYDAFAIDTTNVTEIAPYI--WVITIVFIVATL 645
Query: 66 ----VSVLMTTAKGREFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLL 118
++ +T GFL F VV+ R + +T ++I +T+L L+L
Sbjct: 646 SIPFINKRITAVVVVGVIGFLLALLF----VVF--RAPDLALTQLLIETVTVLLLML 696
>gi|6899589|gb|AAF30994.1|AE002156_9 (AE002156) unique hypothetical
[Ureaplasma urealyticum]
Length = 166
Score = 30.1 bits (66), Expect = 9.0
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 77 EFRGFLFESRFELRKVVWPTRQEAIRITWVVIVMITILSLLLGGFDFVIQKLT 129
+ + +L+ E+R+ W +++ I +VIV++ IL+ + G D KL+
Sbjct: 112 KLKRWLYGINKEIRRTTWASKRSVIISLIIVIVIVLILAAIFFGIDTGFYKLS 164
Database: nr
Posted date: Feb 20, 2000 12:20 AM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.335 0.146 0.447
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31193293
Number of Sequences: 457798
Number of extensions: 995382
Number of successful extensions: 4649
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4627
Number of HSP's gapped (non-prelim): 31
length of query: 135
length of database: 140,871,481
effective HSP length: 47
effective length of query: 88
effective length of database: 119,354,975
effective search space: 10503237800
effective search space used: 10503237800
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 66 (30.1 bits)