BLASTP 2.0.10 [Aug-26-1999]
Query= XF-05E12-GL26
(225 letters)
Database: nr
457,798 sequences; 140,871,481 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|1729783|emb|CAA70931| (Y09798) colR [Pseudomonas fluorescens] 273 7e-73
gi|2222756|emb|CAB09978| (Z97182) tcrA [Mycobacterium tuberculo... 157 1e-37
gi|1408184 (U56083) two component response regulator [Mycobacte... 153 1e-36
gi|1176110|sp|P45337|YGIX_HAEIN PROBABLE TRANSCRIPTIONAL REGULA... 148 3e-35
gi|729183|sp|Q02540|COPR_PSESM TRANSCRIPTIONAL ACTIVATOR PROTEI... 148 4e-35
gi|1653824|dbj|BAA18735| (D90916) regulatory components of sens... 146 1e-34
gi|6458452|gb|AAF10321.1|AE001930_2 (AE001930) response regulat... 146 2e-34
gi|2500741|sp|Q44006|CZCR_ALCEU TRANSCRIPTIONAL ACTIVATOR PROTE... 145 3e-34
gi|2632045|emb|CAA05604| (AJ002571) YkoG [Bacillus subtilis] >g... 145 3e-34
gi|5777378|emb|CAB53386.1| (AJ132741) transcriptional regulator... 145 3e-34
gi|2120818|pir||S58232 PopP protein - Rhizobium leguminosarum >... 145 4e-34
gi|3511129 (AF060858) regulatory protein CopR [Salmonella dublin] 145 4e-34
gi|3913940|sp|O31395|IRLR_BURPS TRANSCRIPTIONAL ACTIVATOR PROTE... 143 1e-33
gi|2598275|emb|CAA73687| (Y13235) FeuP protein [Brucella suis] 143 1e-33
gi|2916942|emb|CAA17580| (AL021999) hypothetical protein Rv0981... 143 2e-33
gi|4980903|gb|AAD35484.1|AE001719_10 (AE001719) response regula... 142 3e-33
gi|5921515|emb|CAB56468.1| (Y14018) czrR protein [Pseudomonas a... 141 4e-33
gi|4455703|emb|CAB36688.1| (AL035500) putative two-component re... 141 6e-33
gi|2500750|sp|P76340|YEDW_ECOLI PROBABLE TRANSCRIPTIONAL REGULA... 140 1e-32
gi|1736638|dbj|BAA15796| (D90835) Transcriptional activator pro... 140 1e-32
gi|6117972|gb|AAF03932.1|AF139908_2 (AF139908) LisR [Listeria m... 140 1e-32
gi|1001644|dbj|BAA10375| (D64002) regulatory components of sens... 139 1e-32
gi|4206626 (AF067954) putative transcriptional regulator respon... 139 1e-32
gi|6045171|dbj|BAA85309.1| (AB033420) ORFR [Pseudomonas syringae] 139 3e-32
gi|1723888|sp|P52076|YGIX_ECOLI PROBABLE TRANSCRIPTIONAL REGULA... 139 3e-32
gi|2500749|sp|P77380|YLCA_ECOLI PROBABLE TRANSCRIPTIONAL REGULA... 139 3e-32
gi|6174678|dbj|BAA85986.1| (AB024522) gcrR [Streptococcus mutans] 136 2e-31
gi|543777|sp|Q04942|AFQ1_STRCO TRANSCRIPTIONAL REGULATORY PROTE... 135 3e-31
gi|1834375|emb|CAA70859| (Y09666) RagA [Bradyrhizobium japonicum] 134 6e-31
gi|1208484|dbj|BAA10652| (D64004) regulatory components of sens... 134 8e-31
gi|2815358|emb|CAA16481| (AL021530) puative turgor pressure reg... 134 8e-31
gi|6531667|gb|AAF15533.1|AF196490_3 (AF196490) phosphate regulo... 133 1e-30
gi|3599371 (AF082668) CsrR [Streptococcus pyogenes] 132 2e-30
gi|729232|sp|Q03756|CUTR_STRCO TRANSCRIPTIONAL REGULATORY PROTE... 132 3e-30
gi|1652523|dbj|BAA17444| (D90906) regulatory components of sens... 131 4e-30
gi|6458493|gb|AAF10359.1|AE001933_3 (AE001933) response regulat... 131 4e-30
gi|6002654|gb|AAF00081.1|AF095713_1 (AF095713) response regulat... 131 6e-30
gi|387603 (M95680) putative [Fremyella diplosiphon] 130 1e-29
gi|509815 (U01971) MtrA [Mycobacterium tuberculosis] 130 1e-29
gi|417621|sp|Q01473|RCAC_FREDI RCAC PROTEIN >gi|282227|pir||S27... 130 1e-29
gi|2072713|emb|CAB08347| (Z95121) mtrA [Mycobacterium tuberculo... 130 1e-29
gi|4539212|emb|CAB39870.1| (AL049497) putative two component re... 129 2e-29
gi|1055347 (U38917) response regulator PhoB [Synechococcus WH7803] 129 2e-29
gi|2769532|emb|CAA11074| (AJ223073) phosphate regulatory protei... 127 6e-29
gi|2687343|emb|CAA15884| (AL020958) two-component system regula... 127 8e-29
gi|135529|sp|P22104|TCTD_SALTY TRANSCRIPTIONAL REGULATORY PROTE... 127 1e-28
gi|4982229|gb|AAD36722.1|AE001807_13 (AE001807) response regula... 126 2e-28
gi|538802|pir||B40656 regulatory protein pmrA - Salmonella typh... 126 2e-28
gi|1575577 (U67196) DNA-binding response regulator [Thermotoga ... 126 2e-28
gi|1736640|dbj|BAA15797| (D90836) Transcriptional activator pro... 125 2e-28
gi|4481749|gb|AAD21216| (AF007865) BacR [Bacillus licheniformis] 125 3e-28
gi|6466297|gb|AAF12879.1|AF022186_1 (AF022186) unknown [Cyanidi... 125 3e-28
gi|1073570|pir||S52257 pcoR protein - Escherichia coli >gi|6191... 125 4e-28
gi|1314043|emb|CAA97378| (Z73101) hypothetical protein Rv0903c ... 125 4e-28
gi|1575690 (U70379) response regulator [Synechococcus PCC7942] 124 5e-28
gi|548535|sp|P36556|BASR_SALTY TRANSCRIPTIONAL REGULATORY PROTE... 124 7e-28
gi|4726009|emb|CAB41738.1| (AL049731) putative two component re... 124 7e-28
gi|1731207|sp|Q11156|RGX3_MYCTU SENSORY TRANSDUCTION PROTEIN RE... 123 9e-28
gi|1805445|dbj|BAA09007| (D50453) homologue of alkaline phospha... 123 9e-28
gi|1869995|emb|CAB06846| (Z92539) hypothetical protein Rv1033c ... 123 9e-28
gi|6685724|sp|Q52990|PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTION... 123 1e-27
gi|6460139|gb|AAF11874.1|AE002064_5 (AE002064) response regulat... 123 1e-27
gi|6862582|gb|AAD30120.2| (AF135389) DNA binding response regul... 123 1e-27
gi|2190436|emb|CAA73956| (Y13627) RegX3 [Mycobacterium bovis BCG] 123 2e-27
gi|6467529|gb|AAF13177.1|AF181078_1 (AF181078) response regulat... 123 2e-27
gi|466194|sp|P35163|RESD_BACSU TRANSCRIPTIONAL REGULATORY PROTE... 122 2e-27
gi|2440114|emb|CAB16701| (Z99494) two-component regulator [Myco... 122 2e-27
gi|6460836|gb|AAF12540.1|AE001826_9 (AE001826) response regulat... 122 3e-27
gi|2145537|pir||S70164 pcoR protein - Escherichia coli plasmid ... 122 4e-27
gi|400783|sp|P13792|PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS T... 121 6e-27
gi|2293270 (AF008220) signal transduction regulator [Bacillus s... 121 6e-27
gi|3401948|dbj|BAA32131| (AB011413) Orf3 [Streptomyces griseus] 120 8e-27
gi|584828|sp|P30843|BASR_ECOLI TRANSCRIPTIONAL REGULATORY PROTE... 120 1e-26
gi|1360982|pir||S56341 basR protein - Escherichia coli >gi|5369... 120 1e-26
gi|2960189|emb|CAA18087.1| (AL022121) hypothetical protein Rv37... 120 1e-26
gi|2961074 (AF029846) TctD [Salmonella typhi] 120 1e-26
gi|2952543 (AF051939) response regulator CtrA [Brucella abortus] 120 1e-26
gi|4768853|gb|AAD29647.1|AF124757_7 (AF124757) phosphate regula... 120 1e-26
gi|1617255|emb|CAA47148| (X66587) phoP [Yersinia pseudotubercul... 119 2e-26
gi|3860641|emb|CAA14542| (AJ235270) TRANSCRIPTIONAL ACTIVATOR P... 119 2e-26
gi|4104599 (AF036965) putative response regulator [Lactobacillu... 119 2e-26
gi|730805|sp|P39663|SPHR_SYNP7 ALKALINE PHOSPHATASE SYNTHESIS T... 118 3e-26
gi|5830529|emb|CAB54572.1| (AJ006394) response regulator [Strep... 118 3e-26
gi|6808396|emb|CAB70633.1| (AL137242) probable two-component re... 118 3e-26
gi|1621018|emb|CAA70004| (Y08758) PhoP protein [Yersinia pestis] 117 7e-26
gi|73046|pir||RGBSAP alkaline phosphatase regulatory protein - ... 117 9e-26
gi|3980223|emb|CAA10325.1| (AJ131213) response regulator [Strep... 117 9e-26
gi|5114230|gb|AAD40237.1|AF136709_1 (AF136709) response regulat... 117 9e-26
gi|6448492|emb|CAB61229.1| (Y15706) vanr protein [Bacillus circ... 117 9e-26
gi|6689205|emb|CAB65399.1| (AJ012052) VicR protein [Staphylococ... 117 9e-26
gi|6687469|emb|CAB64972.1| (AJ012050) VicR protein [Enterococcu... 117 9e-26
gi|1550635|emb|CAB02400| (Z80226) phoP [Mycobacterium tuberculo... 116 1e-25
gi|987095|emb|CAA60455| (X86780) response regulator [Streptomyc... 116 2e-25
gi|5830538|emb|CAB54578.1| (AJ006397) response regulator [Strep... 116 2e-25
gi|1151107 (U39559) cell cycle transcriptional regulator [Caulo... 115 3e-25
gi|130127|sp|P14146|PHOP_SALTY VIRULENCE TRANSCRIPTIONAL REGULA... 115 4e-25
gi|4530445|gb|AAD22036.1| (AF118229) response regulator PnpR [S... 115 4e-25
gi|130126|sp|P23836|PHOP_ECOLI TRANSCRIPTIONAL REGULATORY PROTE... 115 5e-25
gi|4104608 (AF036968) putative response regulator [Lactobacillu... 115 5e-25
gi|1001828|dbj|BAA10709| (D64005) regulatory components of sens... 114 6e-25
gi|4433393|gb|AAD20723| (AF051157) response regulator homolog O... 114 6e-25
gi|1652041|dbj|BAA16966| (D90902) regulatory components of sens... 114 8e-25
gi|4104695 (AF039082) putative response regulator; RrF [Lactoco... 114 8e-25
gi|586808|sp|P37478|YYCF_BACSU HYPOTHETICAL 27.2 KD SENSORY TRA... 113 1e-24
gi|5830523|emb|CAB54568.1| (AJ006392) response regulator [Strep... 113 1e-24
gi|3724162|emb|CAA09795| (AJ011832) PhoP protein [Yersinia ente... 113 1e-24
gi|6460240|gb|AAF11967.1|AE002072_9 (AE002072) DNA-binding resp... 113 1e-24
gi|586203|sp|Q06239|VANR_ENTFC REGULATORY PROTEIN VANR >gi|2822... 112 2e-24
gi|1351749|sp|P48259|YC27_CYAPA PROBABLE TRANSCRIPTIONAL REGULA... 112 2e-24
gi|1731135|sp|P54443|YRKP_BACSU HYPOTHETICAL 26.8 KD SENSORY TR... 112 2e-24
gi|6136611|sp|O78428|YC27_GUITH PROBABLE TRANSCRIPTIONAL REGULA... 112 2e-24
gi|1175624|sp|P42244|YCBL_BACSU HYPOTHETICAL 25.8 KD SENSORY TR... 111 4e-24
gi|129159|sp|P28835|YC27_PORAE PROBABLE TRANSCRIPTIONAL REGULAT... 111 5e-24
gi|3282774|gb|AAC25063.1| (AF043352) response regulator homolog... 110 1e-23
gi|1001717|dbj|BAA10554| (D64004) regulatory components of sens... 109 2e-23
gi|2984736|gb|AAC08021.1| (AF053960) response regulator protein... 109 2e-23
gi|2500744|sp|Q47744|VANR_ENTFA REGULATORY PROTEIN VANRB >gi|12... 109 2e-23
gi|3913255|sp|Q54954|CIAR_STRPN TRANSCRIPTIONAL REGULATORY PROT... 109 3e-23
gi|1870001|emb|CAB06852| (Z92539) kdpE [Mycobacterium tuberculo... 109 3e-23
gi|5830517|emb|CAB54564.1| (AJ005926) response regulator [Strep... 109 3e-23
gi|2982999 (AE000683) transcriptional regulator (PhoB-like) [Aq... 108 4e-23
gi|4104602 (AF036966) putative response regulator [Lactobacillu... 108 5e-23
gi|6460051|gb|AAF11793.1|AE002057_1 (AE002057) phosphate regulo... 108 6e-23
gi|130120|sp|P23620|PHOB_PSEAE PHOSPHATE REGULON TRANSCRIPTIONA... 107 8e-23
gi|3288064|emb|CAB09801| (Z97065) RisA protein [Bordetella bron... 107 8e-23
gi|6689352|emb|CAB65451.1| (AJ012051) VicR protein [Streptococc... 107 8e-23
gi|6968660|emb|CAB73481.1| (AL139077) putative two-component re... 107 8e-23
gi|1731206|sp|P54884|YV17_MYCLE HYPOTHETICAL SENSORY TRANSDUCTI... 107 8e-23
gi|1172482|sp|P45606|PHOB_SHIDY PHOSPHATE REGULON TRANSCRIPTION... 107 1e-22
gi|130119|sp|P08402|PHOB_ECOLI PHOSPHATE REGULON TRANSCRIPTIONA... 107 1e-22
gi|541208|pir||S41887 ompR protein - Salmonella typhi 107 1e-22
gi|3236110|emb|CAA04532| (AJ001103) arcA [Lactococcus lactis] 106 1e-22
gi|129158|sp|P03025|OMPR_ECOLI TRANSCRIPTIONAL REGULATORY PROTE... 106 2e-22
gi|2108342|emb|CAA70146| (Y08950) OmpR protein [Yersinia entero... 106 2e-22
gi|4104605 (AF036967) putative response regulator [Lactobacillu... 106 2e-22
gi|4583523|gb|AAD25108.1|AF140356_1 (AF140356) VncR [Streptococ... 106 2e-22
gi|1172483|sp|P45607|PHOB_SHIFL PHOSPHATE REGULON TRANSCRIPTION... 105 3e-22
gi|1747435 (U39673) KdpE [Clostridium acetobutylicum] 105 3e-22
gi|1172481|sp|P45605|PHOB_KLEPN PHOSPHATE REGULON TRANSCRIPTION... 105 4e-22
gi|129160|sp|P08981|OMPR_SALTY TRANSCRIPTIONAL REGULATORY PROTE... 104 7e-22
gi|2313252|gb|AAD07234.1| (AE000537) response regulator (ompR) ... 104 7e-22
gi|1070667|pir||RGECOR osmosensor response regulator ompR - Esc... 104 9e-22
gi|1001817|dbj|BAA10698| (D64005) regulatory components of sens... 104 9e-22
gi|5353563|gb|AAD42180.1|AF130997_1 (AF130997) response regulat... 104 9e-22
gi|4154653 (AE001453) putative TRANSCRIPTIONAL REGULATOR [Helic... 103 1e-21
gi|79509|pir||S22632 petR protein - Rhodobacter capsulatus >gi|... 103 2e-21
gi|5759261|gb|AAD51056.1|AF175293_1 (AF175293) response regulat... 102 3e-21
gi|4103328 (AF022772) response regulator [Erwinia carotovora su... 102 3e-21
gi|6127220|gb|AAF04314.1| (AF150928) putative 2-component regul... 102 3e-21
gi|6137054|emb|CAB59609.1| (AL132662) putative response regulat... 101 8e-21
gi|485521|pir||S33662 rprY protein - Bacteroides fragilis 99 2e-20
gi|3367760|emb|CAA20085| (AL031155) putative two-component regu... 98 7e-20
gi|4981814|gb|AAD36333.1|AE001781_4 (AE001781) phosphate regulo... 98 7e-20
gi|299503|bbs|129436 RprY=inner membrane signal-transducing pro... 97 2e-19
gi|2126761|pir||I40084 gtcR protein - Bacillus brevis >gi|46874... 96 2e-19
gi|6967830|emb|CAB74192.1| (AL139075) two-component regulator [... 95 4e-19
gi|1705849|sp|Q07783|CHVI_AGRTU PROBABLE TRANSCRIPTIONAL REGULA... 95 6e-19
gi|3025460 (U58131) PhoP [Clostridium acetobutylicum] 94 1e-18
gi|625683|pir||A49903 phosphate regulatory protein ChvI - Agrob... 93 2e-18
gi|3860984|emb|CAA14884| (AJ235271) PETR PROTEIN (ompR) [Ricket... 93 2e-18
gi|6093700|sp|P31079|PETR_RHOCA PETR PROTEIN 91 7e-18
gi|2613088|gb|AAB84278.1| (AF030316) OmpR [Yersinia enterocolit... 91 9e-18
gi|2613084|gb|AAB84276.1| (AF030314) OmpR [Shigella flexneri] 89 3e-17
gi|602401 (U07746) OmpR [Xenorhabdus nematophilus] 88 8e-17
gi|1169089|sp|P44895|CPXR_HAEIN TRANSCRIPTIONAL REGULATORY PROT... 88 8e-17
gi|2500753|sp|P55701|Y4XI_RHISN PROBABLE TRANSCRIPTIONAL REGULA... 88 8e-17
gi|1621045 (U50932) GltR [Pseudomonas aeruginosa] 87 1e-16
gi|1172480|sp|P45189|PHOB_HAEIN PHOSPHATE REGULON TRANSCRIPTION... 86 2e-16
gi|2613090|gb|AAB84279.1| (AF030317) OmpR [Proteus vulgaris] 86 3e-16
gi|2613086|gb|AAB84277.1| (AF030315) OmpR [Enterobacter cloacae] 85 4e-16
gi|1666499|emb|CAA70482| (Y09296) response regulator of two-com... 84 9e-16
gi|2632486|emb|CAB11994| (Z99105) similar to two-component resp... 84 1e-15
gi|281708|pir||S28674 hypothetical protein 2 - Rhizobium sp. (s... 82 6e-15
gi|2126074|pir||I69716 torCAD response regulator - Escherichia ... 80 1e-14
gi|2507607|sp|P38684|TORR_ECOLI TORCAD OPERON TRANSCRIPTIONAL R... 80 2e-14
gi|2314190|gb|AAD08088.1| (AE000612) response regulator [Helico... 78 8e-14
gi|2073506|emb|CAA72451| (Y11777) transcriptional regulatory pr... 77 1e-13
gi|4511977|gb|AAD21537.1| (AF088896) aerobic respiration contro... 77 1e-13
gi|4154918 (AE001473) putative TRANSCRIPTIONAL REGULATOR [Helic... 76 2e-13
gi|2853598 (AF031898) CheY [Pseudomonas putida] 73 2e-12
gi|5830532|emb|CAB54574.1| (AJ006395) response regulator [Strep... 73 2e-12
gi|2500739|sp|Q51455|CHEY_PSEAE CHEMOTAXIS PROTEIN CHEY >gi|948... 71 8e-12
gi|2914154|pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V... 71 8e-12
gi|2914156|pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V... 71 8e-12
gi|230455|pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) ... 71 1e-11
gi|1688294 (U78087) CheY [Burkholderia pseudomallei] 71 1e-11
gi|116292|sp|P06657|CHEY_SALTY CHEMOTAXIS PROTEIN CHEY >gi|7260... 70 1e-11
gi|515285|pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2C... 70 1e-11
gi|6952814|gb|AAF32415.1| (AF069392) chemotaxis protein CheY [V... 70 2e-11
gi|116291|sp|P06143|CHEY_ECOLI CHEMOTAXIS PROTEIN CHEY >gi|7260... 68 5e-11
gi|230822|pdb|3CHY| CheY >gi|576050|pdb|1CHN| Chey Complexed ... 68 5e-11
gi|999670|pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inse... 68 5e-11
gi|1421458|pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 St... 68 5e-11
gi|6435696|pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, ... 68 7e-11
gi|145525 (M13463) cheY peptide [Escherichia coli] 68 9e-11
gi|2507377|sp|P30855|EVGS_ECOLI PUTATIVE SENSOR PROTEIN EVGS PR... 68 9e-11
gi|6573134|gb|AAF17563.1| (AF201840) sensor protein EvgS1 [Esch... 68 9e-11
gi|6573136|gb|AAF17564.1|AF201841_1 (AF201841) sensor protein E... 68 9e-11
gi|2073556 (U62023) sensor/regulator protein RpfA [Erwinia caro... 67 1e-10
gi|2983588 (AE000724) transcriptional regulator (NtrC family) [... 67 1e-10
gi|1421405|pdb|1YMU|A Chain A, Signal Transduction Protein Chey... 66 2e-10
gi|1942868|pdb|5CHY| Structure Of Chemotaxis Protein Chey 66 2e-10
gi|1710787|sp|P52108|RSTA_ECOLI TRANSCRIPTIONAL REGULATORY PROT... 63 2e-09
gi|585207|sp|Q05943|GLNR_STRCO TRANSCRIPTIONAL REGULATORY PROTE... 55 7e-07
gi|2916876|emb|CAA17624.1| (AL022004) hypothetical protein Rv08... 53 2e-06
gi|1403404|emb|CAA98360| (Z74024) hypothetical protein Rv2884 [... 49 4e-05
gi|1814224 (U57625) HrpG [Xanthomonas campestris pv. vesicatoria] 46 2e-04
gi|1170464|sp|P43016|IAGA_SALTI INVASION PROTEIN IAGA >gi|79114... 45 5e-04
gi|1170465|sp|P43015|IAGA_SALTY INVASION PROTEIN IAGA (PROTEIN ... 45 5e-04
gi|2145544|pir||S70816 hilA protein - Salmonella typhimurium (f... 44 0.001
gi|6318173|emb|CAB60259.1| (AJ250862) MrsR1 protein [Bacillus s... 32 5.8
gi|115416|sp|P23890|CADC_ECOLI TRANSCRIPTIONAL ACTIVATOR CADC >... 31 7.6
gi|3115359 (U77060) ToxR [Photobacterium profundum] 31 9.9
>gi|1729783|emb|CAA70931| (Y09798) colR [Pseudomonas fluorescens]
Length = 227
Score = 273 bits (692), Expect = 7e-73
Identities = 130/220 (59%), Positives = 166/220 (75%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL++EDN DI ANL DYL +G+ VD A DG++GLHLA +D IVLD+ LPG+DG
Sbjct: 1 MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+C++LR +AR TPV+MLTARD LD++L GF SGADDYLIKPFAL E+ R+ A+ RR
Sbjct: 61 TLCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+G R L+ GDL Y+LDTLEV R GKLL+LNP GLK+L LM+ +P V+ R+ LE +W
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180
Query: 181 GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
G++ PDSDSLR H+H LR V+DK D PL+ T HG+GYR+
Sbjct: 181 GDDCPDSDSLRSHVHQLRQVIDKRSDKPLLHTVHGVGYRL 220
>gi|2222756|emb|CAB09978| (Z97182) tcrA [Mycobacterium tuberculosis]
Length = 253
Score = 157 bits (392), Expect = 1e-37
Identities = 94/221 (42%), Positives = 127/221 (56%), Gaps = 2/221 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+RILV+ED + A L L E GH VD ADG + ++DA+VLD+ LPG+DG
Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EVC +LR + R TPVLMLTAR ++ +++ G D GADDYL KPF L E+ RL ALSRRG
Sbjct: 83 EVCARLRRQ-RVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRG 141
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ LE GDL + V R ++L+ +L+AL+ V TR L R W
Sbjct: 142 PIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCW 201
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
S+ + V+I LR +D+PF V ++T G GYR+
Sbjct: 202 DAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
>gi|1408184 (U56083) two component response regulator [Mycobacterium
tuberculosis]
Length = 234
Score = 153 bits (383), Expect = 1e-36
Identities = 93/221 (42%), Positives = 125/221 (56%), Gaps = 2/221 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ ILV+ED + A L L E GH VD ADG + ++DA+VLD+ LPG+DG
Sbjct: 4 VHILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGIDGF 63
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EVC +LR + R TPVLMLTAR + +++ G D GADDYL KPF L E+ RL ALSRRG
Sbjct: 64 EVCARLRRQ-RVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRG 122
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ LE GDL + V R ++L+ +L+AL+ V TR L R W
Sbjct: 123 PIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCW 182
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
S+ + V+I LR +D+PF V ++T G GYR+
Sbjct: 183 DAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 223
>gi|1176110|sp|P45337|YGIX_HAEIN PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN HI1708 >gi|1075368|pir||F64137 transcriptional
regulatory protein (basR) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1574562 (U32843)
transcriptional regulatory protein (ygiX) [Haemophilus
influenzae Rd]
Length = 221
Score = 148 bits (371), Expect = 3e-35
Identities = 91/222 (40%), Positives = 130/222 (57%), Gaps = 8/222 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL+IED++ I L L + G AVD+ DG TG+ +DA+VLDL LP +DG+
Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EV ++ R+ + PVL+LTARD+LD ++ G SGADDYL KPFAL EV RL AL RR
Sbjct: 61 EVLQQWRSN-HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 179
G V+E ++ + + V + + L K+L+ M V++R +E ++
Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179
Query: 180 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
W EE+ S +L VHI+ LR + K F I+T HG+GY +
Sbjct: 180 SWDEEI-SSGALDVHIYNLRQKLGKQF----IRTVHGVGYAL 216
>gi|729183|sp|Q02540|COPR_PSESM TRANSCRIPTIONAL ACTIVATOR PROTEIN
COPR >gi|420851|pir||B47080 transcriptional activator
protein copR - Pseudomonas syringae >gi|151181 (L05176)
transcriptional activator [Pseudomonas syringae]
Length = 227
Score = 148 bits (370), Expect = 4e-35
Identities = 85/226 (37%), Positives = 127/226 (55%), Gaps = 3/226 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M++LV ED L L E G VD G + A+ +D ++LD+ +PG+DG
Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EV R+LR A + PVL LTARD +D+++ G + GADDYL+KPFAL E+ R+ L RRG
Sbjct: 61 EVIRRLRT-AGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRG 119
Query: 121 KGLQTRV-LETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
LQ + L+ GDL+ +L R GK ++L +L+ LM V+++ + ++V
Sbjct: 120 SSLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 179
Query: 180 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
W D++ + V I LRA +D F+V L+ T G+GY + D
Sbjct: 180 WDMNFDSDTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLEAQD 225
>gi|1653824|dbj|BAA18735| (D90916) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 234
Score = 146 bits (366), Expect = 1e-34
Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 3/223 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL++ED+ +A L + L ++ + VD A D A E+D ++LD+ LP +DGI
Sbjct: 1 MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+C+K R+ + P+LM+TARD++++K+TG D+GADDY++KP L E+ R+ AL RRG
Sbjct: 61 TLCQKWRSHSYLM-PILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
VLE G + + T EV ++L L IL+ L+ V++R + +W
Sbjct: 120 CATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIW 179
Query: 181 G-EELPDSDSLRVHIHGLRAVVDKP-FDVPLIQTRHGIGYRIA 221
E P+ D+++VH+ LR + I+T HGIGYR+A
Sbjct: 180 KLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLA 222
>gi|6458452|gb|AAF10321.1|AE001930_2 (AE001930) response regulator
[Deinococcus radiodurans]
Length = 225
Score = 146 bits (364), Expect = 2e-34
Identities = 84/216 (38%), Positives = 128/216 (58%), Gaps = 2/216 (0%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+LVIED DIA + L G+A + A DGVTGL D ++LDL LP +DG+EV
Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R++R + TP+++LTA+D + +K+ G DSGADDYLIKPF+++E+ R+ A RR
Sbjct: 67 ARRIRKTSN--TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNP 124
Query: 123 LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGE 182
T + DL NLD E+ R G+ ++L+ ++L+ L V +R ++E +VW E
Sbjct: 125 AVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWPE 184
Query: 183 ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
S+ + V+I LR +++ + LI T G+GY
Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGY 220
>gi|2500741|sp|Q44006|CZCR_ALCEU TRANSCRIPTIONAL ACTIVATOR PROTEIN
CZCR >gi|1403127|emb|CAA67086| (X98451) czcR [Ralstonia
eutropha]
Length = 225
Score = 145 bits (363), Expect = 3e-34
Identities = 84/219 (38%), Positives = 125/219 (56%), Gaps = 3/219 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV+ED A L L E G VD A +G GLH+A ++D I+LD+ LPGMDG
Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
V + +R+++ +TPVL LTA D + +++ GF+ GADDYL+KPFA E+ R+ R+
Sbjct: 61 TVIKSIRSKS--ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
++ L DL+ ++ V R ++L +L LM V++R + ++VW
Sbjct: 119 TSKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVW 178
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
G D++ + V I LR+ VD PFD LI T G+GY
Sbjct: 179 GVNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGY 217
>gi|2632045|emb|CAA05604| (AJ002571) YkoG [Bacillus subtilis]
>gi|2633679|emb|CAB13182| (Z99110) similar to
two-component response regulator [YkoH] [Bacillus
subtilis]
Length = 228
Score = 145 bits (362), Expect = 3e-34
Identities = 85/223 (38%), Positives = 133/223 (59%), Gaps = 7/223 (3%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL++ED IA L LE G++V +G GL A + ++LD+ LPG+ G+EV
Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R+LR + QTPV++LTARDS+ +K+TG D GA+DY+ KPF ++E+ R+ A R+ G
Sbjct: 66 LRRLR-KTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ-NG 123
Query: 123 LQTRVLET----GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+T + T DL N T EVRR K ++L P +L +++ V+TR+ + +
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183
Query: 179 VWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
VWG + + D++ + V+I +R +D P++ LI T G+GY I
Sbjct: 184 VWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226
>gi|5777378|emb|CAB53386.1| (AJ132741) transcriptional regulatory
protein, putative [Bordetella pertussis]
Length = 223
Score = 145 bits (362), Expect = 3e-34
Identities = 84/222 (37%), Positives = 131/222 (58%), Gaps = 6/222 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LVIED++ + L ++L ++G+AVD+ +G L +D ++LDLNLPGM G+
Sbjct: 1 MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDKVLGALAGQPYDLLLLDLNLPGMSGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+V R+LR + Q PVL+LTARD LD+++ G D+GADDY+ KPF L E+ R+ AL RR
Sbjct: 61 DVLRQLRQDGN-QVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRR 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL--ETR 178
G +E G L ++ EVR G L L+ L +L+ LM + VVT++ +
Sbjct: 120 SGQAQPQIEVGPLVFDTVGREVRANGTRLALSVRELSVLEMLMARSGRVVTKRQIVNSLS 179
Query: 179 VWGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
W + + +++ V+++ LR ++ IQT G GY +
Sbjct: 180 AWDADFSE-NAVEVYVYRLRKRLEG--SGASIQTVRGFGYML 218
>gi|2120818|pir||S58232 PopP protein - Rhizobium leguminosarum
>gi|929822|emb|CAA62008| (X89983) FeuP [Rhizobium
leguminosarum]
Length = 223
Score = 145 bits (361), Expect = 4e-34
Identities = 87/224 (38%), Positives = 126/224 (55%), Gaps = 6/224 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRILV+ED+ ++ L D L+E G+ VD A DG G L +DAI+LD+ LP MDG+
Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
V K R R PVL+LTARD +K+ G D+GADDY+ KPF ++EV R+ AL RR
Sbjct: 61 TVLEKWRGAGRG-VPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRA 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
G + + G + + + + G L+L ++L LM VV+R +L ++
Sbjct: 120 AGHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMY 179
Query: 181 GEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
++ DS+++ V + LR K V LI+T G+GYRI P
Sbjct: 180 DQDFDRDSNTIEVFVGRLR----KKMGVDLIETVRGLGYRIQAP 219
>gi|3511129 (AF060858) regulatory protein CopR [Salmonella dublin]
Length = 248
Score = 145 bits (361), Expect = 4e-34
Identities = 85/221 (38%), Positives = 129/221 (57%), Gaps = 4/221 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL+IEDN + L E G+ VD+A DG GLHLA+ + I+LD+ LPG+DG
Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+V R LR Q+P + LTARDS+++++ G ++GA+DYL+KPF+ E+ R+ A R+
Sbjct: 83 QVLRALR--TAHQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQH 140
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ TR+ G L+ + V R GK + L +L L +V R + + VW
Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
G +++++ V I LRA VD+PF+ LI T G+GYR+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 240
>gi|3913940|sp|O31395|IRLR_BURPS TRANSCRIPTIONAL ACTIVATOR PROTEIN
IRLR >gi|2245588 (AF005358) IrlR [Burkholderia
pseudomallei]
Length = 229
Score = 143 bits (358), Expect = 1e-33
Identities = 80/219 (36%), Positives = 121/219 (54%), Gaps = 3/219 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL++ED + L E G D+ DGVTGLH A E+D I+LD+ LPG DG
Sbjct: 1 MRILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
V +LR TPVL LTARD + +++ G + GADDY++KPF E+ R+ ++ RRG
Sbjct: 61 TVLERLRRA--HSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRG 118
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ ++ VL DLE +L + R+G ++ L +L LM ++ R + ++VW
Sbjct: 119 QARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVW 178
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
D++ + I LR+ +D ++ LI T G+GY
Sbjct: 179 DMNFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGY 217
>gi|2598275|emb|CAA73687| (Y13235) FeuP protein [Brucella suis]
Length = 229
Score = 143 bits (357), Expect = 1e-33
Identities = 85/221 (38%), Positives = 124/221 (55%), Gaps = 6/221 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL++ED+ D+ L + + G+ VD A DG G +L +DA+VLD+ LP MDGI
Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
V + R R PVLMLTARD +K+ G D+GADDY+ KPF ++EV RL AL RR
Sbjct: 61 SVVERWRRSGRT-IPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRA 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
G + G L + T + G +L+L ++L +M VV+R +L ++
Sbjct: 120 AGHASSEFVCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLY 179
Query: 181 GEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
++ DS+++ V + LR K V LI+T G+GYR+
Sbjct: 180 DQDFDRDSNTIEVFVGRLR----KKMGVDLIETVRGMGYRM 216
>gi|2916942|emb|CAA17580| (AL021999) hypothetical protein Rv0981
[Mycobacterium tuberculosis]
Length = 230
Score = 143 bits (356), Expect = 2e-33
Identities = 84/222 (37%), Positives = 128/222 (56%), Gaps = 5/222 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+RILV++D+ + +L L G++V+ A DGV L + DA+VLD+ +P +DG+
Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGL 62
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EVCR+LR P+L+LTARDS+ ++ G D+GADDYL KPFAL+E+ R+ AL RR
Sbjct: 63 EVCRQLRGTG-DDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
Query: 121 K---GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
K ++ + DL + T EV R + + L T +L+ L+ V+TR +
Sbjct: 122 KPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILE 181
Query: 178 RVWGEELPDS-DSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
VWG + P S ++L V++ LR + + LI T G+GY
Sbjct: 182 EVWGFDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGY 223
>gi|4980903|gb|AAD35484.1|AE001719_10 (AE001719) response regulator
[Thermotoga maritima]
Length = 225
Score = 142 bits (354), Expect = 3e-33
Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 2/219 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+R+LV+ED D+A + + L++ VD DG G+++A+ FD ++LD+ LP DG
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 62
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+ + +R E+ TPVLMLTA ++ ++ G + GADDYL KPF L+E+ R+ AL RR
Sbjct: 63 EILKSMR-ESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
++ L GDL + T + R K + L +IL+ L+ VVT+++L+ +W
Sbjct: 122 SESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLW 181
Query: 181 G-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
++ SD LR HI LR VDK F +I T GIGY
Sbjct: 182 SFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGY 220
>gi|5921515|emb|CAB56468.1| (Y14018) czrR protein [Pseudomonas
aeruginosa]
Length = 224
Score = 141 bits (353), Expect = 4e-33
Identities = 84/220 (38%), Positives = 120/220 (54%), Gaps = 4/220 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL+IED A L L E G+ VD A DG+ GLH+A+ H ++ ++LD+NLPG+DG
Sbjct: 1 MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGW 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 119
++ R+LR R V+MLT L +K+ G D GADD+++KPF E+ R+ +L RR
Sbjct: 61 DLLRRLRE--RSSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRH 118
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ VL DLE + R + L +L LM V+TR + + +
Sbjct: 119 DQAPMQDVLRVADLELDASRHRAFRGRVRINLTTKEFALLHLLMRRNGDVITRTQIISLI 178
Query: 180 WGEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
W DS+ + V I LRA +D FD+ LI T G+GY
Sbjct: 179 WDMNFDNDSNVVEVAICRLRAKIDDGFDLKLIHTIRGVGY 218
>gi|4455703|emb|CAB36688.1| (AL035500) putative two-component
response regulator [Mycobacterium leprae]
Length = 253
Score = 141 bits (351), Expect = 6e-33
Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+RIL ++D+ + +L L G++V+ A DGV L + DA+VLD+ +P +DG+
Sbjct: 26 VRILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGL 85
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EVCR+LR+ P+L+LTARDS+ ++ G D+GADDYL KPFAL+E+ R+ AL RR
Sbjct: 86 EVCRQLRSTG-DDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRT 144
Query: 121 K---GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
K ++ + DL + T EV R + + L T +L+ L+ V+TR +
Sbjct: 145 KPDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILE 204
Query: 178 RVWGEELPDS-DSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
VWG + P S ++L V++ LR + + LI T G+GY
Sbjct: 205 EVWGFDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGY 246
>gi|2500750|sp|P76340|YEDW_ECOLI PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN YEDW >gi|1788280 (AE000288) putative 2-component
transcriptional regulator [Escherichia coli]
Length = 239
Score = 140 bits (349), Expect = 1e-32
Identities = 83/219 (37%), Positives = 125/219 (56%), Gaps = 4/219 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL+IEDN + L E G+ +D +DG GL+LA+ ++ I+LD+ LPGMDG
Sbjct: 17 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++ + LR KQTPV+ LTARDS+D+++ G DSGA+DYL+KPF+ E+ R+ A R+
Sbjct: 77 QILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 134
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
L + LE L + + V R + L ++L L ++ R + + +W
Sbjct: 135 HALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 193
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
G D++++ V I LRA VD PF LI T G+GY
Sbjct: 194 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 232
>gi|1736638|dbj|BAA15796| (D90835) Transcriptional activator protein
CopR. [Escherichia coli]
Length = 260
Score = 140 bits (349), Expect = 1e-32
Identities = 83/219 (37%), Positives = 125/219 (56%), Gaps = 4/219 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL+IEDN + L E G+ +D +DG GL+LA+ ++ I+LD+ LPGMDG
Sbjct: 38 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++ + LR KQTPV+ LTARDS+D+++ G DSGA+DYL+KPF+ E+ R+ A R+
Sbjct: 98 QILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 155
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
L + LE L + + V R + L ++L L ++ R + + +W
Sbjct: 156 HALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 214
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
G D++++ V I LRA VD PF LI T G+GY
Sbjct: 215 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 253
>gi|6117972|gb|AAF03932.1|AF139908_2 (AF139908) LisR [Listeria
monocytogenes]
Length = 226
Score = 140 bits (349), Expect = 1e-32
Identities = 85/227 (37%), Positives = 134/227 (58%), Gaps = 9/227 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL++ED ++A + L+ + A DG GL LA+ E+DAI+LDL LP ++G+E
Sbjct: 3 RILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVE 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VCR++R KQTP++M+TARD L + +GADDY++KPFA++E+ RL +L RR +
Sbjct: 63 VCRRVRQV--KQTPIIMITARDLLSIVYPDWITGADDYIVKPFAIEELLARLRSLLRRVE 120
Query: 122 GLQTRVLETGDLEYNLDTLE-----VRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 176
+ +T L+Y +E V+R +++ L ++L LME V+TR+ L
Sbjct: 121 NAEQSAKQT-TLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLL 179
Query: 177 TRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
+VWG E +++ + V++ LR +D P + IQT G GY + T
Sbjct: 180 NKVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVMRT 226
>gi|1001644|dbj|BAA10375| (D64002) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 224
Score = 139 bits (348), Expect = 1e-32
Identities = 76/218 (34%), Positives = 125/218 (56%), Gaps = 2/218 (0%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
R+LV+E+ +A + L+ G+ V A DG+ G A D I+++ LPGM G+E
Sbjct: 4 RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+CR+LR E + P++++TA+D ++ ++ G D+GADDY++KPF E R+ RR
Sbjct: 64 LCRRLR-EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTH 122
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
VL+ DL +N T E++R +L+ L ++L L+ V+TR+ + RVWG
Sbjct: 123 TTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWG 182
Query: 182 EE-LPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
+ + DS+ + V+I LR ++ + LIQT G+GY
Sbjct: 183 YDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220
>gi|4206626 (AF067954) putative transcriptional regulator responder
SilR [Salmonella typhimurium]
Length = 228
Score = 139 bits (348), Expect = 1e-32
Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 5/229 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED+ L L E G VD A +G+TG HLA+ E+D ++LD+ LP ++G
Sbjct: 1 MKILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++ R LR+ A K PVL+LTA ++++++ G + GADDYL+KPFA E+ R+ L RRG
Sbjct: 61 DIIRMLRS-AGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119
Query: 121 KGLQTR-VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE-TR 178
+ T L+ DL +L + +V R G + L +L+ + V+ R +
Sbjct: 120 NTMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAFFM 179
Query: 179 VWGEEL--PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 225
VW E D++++ V + LRA +D + L QT G+GY + PDA
Sbjct: 180 VWVHEFLTADTNAIDVAVKRLRAKIDNDYGTKLNQTVRGVGYMLEIPDA 228
>gi|6045171|dbj|BAA85309.1| (AB033420) ORFR [Pseudomonas syringae]
Length = 228
Score = 139 bits (346), Expect = 3e-32
Identities = 83/228 (36%), Positives = 124/228 (53%), Gaps = 6/228 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M++LV ED L L E G VD G + A+ +D ++LD+ +PG+DG
Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EV R+LR A + PVL LTARD +D+++ G + GADDYL+KPFA E+ R+ L RRG
Sbjct: 61 EVIRRLRT-AGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRG 119
Query: 121 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+QT L+ GDL+ +L R GK + L +L+ LM V+++ + +
Sbjct: 120 SSSLPVQTS-LQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIAS 178
Query: 178 RVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
+VW D++ + V I LRA +D F+ L+ T G+GY + D
Sbjct: 179 QVWDMNFDSDTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLDAQD 226
>gi|1723888|sp|P52076|YGIX_ECOLI PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN YGIX >gi|882555 (U28377) ORF_o219 [Escherichia
coli] >gi|1789402 (AE000384) putative 2-component
transcriptional regulator [Escherichia coli]
Length = 219
Score = 139 bits (346), Expect = 3e-32
Identities = 86/222 (38%), Positives = 127/222 (56%), Gaps = 8/222 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL+IED+ I + L + G +VD+ G G +DA++LDL LPGMDG
Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++ R+ R + +++ PVL+LTARD+L ++ G GADDYL KPFAL EV RL AL RR
Sbjct: 61 DILREWREKGQRE-PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 179
G + L G++ + G+ L L P +L+ LM V++R+ +E ++
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179
Query: 180 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
W EE+ S+++ VH+H LR + F I+T HGIGY +
Sbjct: 180 TWDEEV-TSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216
>gi|2500749|sp|P77380|YLCA_ECOLI PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN YLCA >gi|1778486 (U82598) CopR homolog
[Escherichia coli] >gi|1786784 (AE000162) putative
2-component transcriptional regulator [Escherichia coli]
>gi|4062195|dbj|BAA35205| (D90699) Transcriptional
activator protein copR. [Escherichia coli]
>gi|4062201|dbj|BAA35211| (D90700) Transcriptional
activator protein copR. [Escherichia coli]
Length = 227
Score = 139 bits (346), Expect = 3e-32
Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 3/226 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M++L++ED L L E G VD A +G+ G HLA+ ++D I+LD+ LP ++G
Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++ R LR+ A K P+L+LTA ++++++ G + GADDYL+KPFA E+ R+ L RRG
Sbjct: 61 DIVRMLRS-ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119
Query: 121 KG-LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ + DL +L + +V R G + L +L+ + V+ R + ++V
Sbjct: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179
Query: 180 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
W D++++ V + LR +D F+ LIQT G+GY + PD
Sbjct: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225
>gi|6174678|dbj|BAA85986.1| (AB024522) gcrR [Streptococcus mutans]
Length = 230
Score = 136 bits (338), Expect = 2e-31
Identities = 85/224 (37%), Positives = 129/224 (56%), Gaps = 8/224 (3%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL+IED +A + L+ G+ V+ DG +GL A+ +FD I+LDL LP MDG EV
Sbjct: 5 ILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLMLPEMDGYEV 64
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R+L+ E K T V+++TARDS+ + +TG D GAD Y++KPFA++E+ R+ A+ RR
Sbjct: 65 IRRLQLE--KTTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDI 122
Query: 123 LQTRVLETGDLEYNLDTLEVR-----RRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ + D Y L+V R G+ + L +L AL+E V+TR++L
Sbjct: 123 EKAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLA 182
Query: 178 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
RVW ++ +++ + V+I LR +D P IQT G+GY I
Sbjct: 183 RVWKYDQEAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYII 226
>gi|543777|sp|Q04942|AFQ1_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN
AFSQ1 >gi|322268|pir||A45270 sensory response regulator
homolog AfsQ1 - Streptomyces coelicolor
>gi|216983|dbj|BAA01502| (D10654) AfsQ1 [Streptomyces
coelicolor]
Length = 225
Score = 135 bits (337), Expect = 3e-31
Identities = 86/223 (38%), Positives = 123/223 (54%), Gaps = 4/223 (1%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+L+IED+ I L L +GH V AA G GL L D IVLD+ LPG+DG EV
Sbjct: 4 LLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
CR++R Q P+++LTAR+ + + G +SGADDY++KP + ++ R+ A+ RRG+
Sbjct: 64 CRRIRRT--DQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121
Query: 123 LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGE 182
T G L + + V + G+ LQL PT L++L L ++RQ L VW
Sbjct: 122 ESTDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEH 181
Query: 183 E-LPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRIATP 223
+ L DS + + LRA V D P LI+T G+GYR+ P
Sbjct: 182 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224
>gi|1834375|emb|CAA70859| (Y09666) RagA [Bradyrhizobium japonicum]
Length = 226
Score = 134 bits (334), Expect = 6e-31
Identities = 82/219 (37%), Positives = 124/219 (56%), Gaps = 3/219 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL+IED+++ A + L +RG V +A DGV GL A DA+++D LPGMDG+
Sbjct: 3 RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMDGLA 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V LR + + +TPVL+L+A ++D+++ G G DDYL KPFA+ E+ R+ AL RR
Sbjct: 63 VIEALRKD-QVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPT 121
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
+ +L G LE +L RR + L+L P ++L+ +M ++TR L VW
Sbjct: 122 DSRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWN 181
Query: 182 EEL--PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
+ ++ + VH+ LR VD P +V LI G G+
Sbjct: 182 YKFVPATTNLIDVHMGRLRHKVDGPGEVQLIHNVRGSGF 220
>gi|1208484|dbj|BAA10652| (D64004) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 241
Score = 134 bits (333), Expect = 8e-31
Identities = 88/226 (38%), Positives = 126/226 (54%), Gaps = 10/226 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL+I+D+ I+ + LE G+ V A DG+ G LAV + D I+LDL LP +DG
Sbjct: 3 RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 62 VCRKLRNEARK-QTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
VC++LR + R PVLMLTA + +K+ GFDSGADDYL KPF ++E+ R+ AL RR
Sbjct: 63 VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122
Query: 121 KGL-----QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
+ + +L G L + E GK ++L ++L L++ V+ D+
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182
Query: 176 ETRVWGEELPDSD--SLRVHIHGLRAVVD-KPFDVPLIQTRHGIGY 218
VWG E PD D ++RVHI LR ++ P I+T +G GY
Sbjct: 183 LREVWGYE-PDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227
>gi|2815358|emb|CAA16481| (AL021530) puative turgor pressure
regulator [Streptomyces coelicolor]
Length = 227
Score = 134 bits (333), Expect = 8e-31
Identities = 86/224 (38%), Positives = 124/224 (54%), Gaps = 8/224 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
R+LVI+D I L L+ R + VD A DG T L LA D +VLDL LP MDG+E
Sbjct: 3 RVLVIDDEPQIVRALVINLKARHYEVDAAHDGATALQLAAARHPDVVVLDLGLPDMDGVE 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V R LR R P+L+L+AR S D K+ D+GADDY+ KPF + E+ RL A RR +
Sbjct: 63 VIRGLRGWTR--VPILVLSARHSSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAE 120
Query: 122 ----GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
G V++T + +L +V R G+ ++L PT +L+ L+ T +V+++ L
Sbjct: 121 PVPGGEDEVVVDTPEFTVDLAAKKVNRGGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQ 180
Query: 178 RVWGEEL-PDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYR 219
VWG +++ LRV++ LR ++ P T G+GYR
Sbjct: 181 EVWGPSYGTETNYLRVYMAQLRRKLEADPAHPRHFITEPGMGYR 224
>gi|6531667|gb|AAF15533.1|AF196490_3 (AF196490) phosphate regulon
response regulator PhoB [Caulobacter crescentus]
Length = 230
Score = 133 bits (332), Expect = 1e-30
Identities = 79/221 (35%), Positives = 125/221 (55%), Gaps = 3/221 (1%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+LV+ED +A L L++ G+ V A DG L +A D ++LD LP + GIEV
Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEV 64
Query: 63 CRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
CR+LR A + P++MLTAR +++ G D+GADDY++KPF++ E+ R+ A+ RR +
Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124
Query: 122 -GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
GL + GD+ + V+R GK + L PT ++L LM+ V +R+ L VW
Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
G ++ ++ ++ VHI LR ++ D I+T GY +
Sbjct: 185 GSDVYVEARTVDVHIGRLRKELNGTTDADPIRTVRSAGYSL 225
>gi|3599371 (AF082668) CsrR [Streptococcus pyogenes]
Length = 228
Score = 132 bits (330), Expect = 2e-30
Identities = 85/224 (37%), Positives = 126/224 (55%), Gaps = 7/224 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+IL+IED ++A + L+ G+ V +G GL A+ EFD I+LDL LP MDG E
Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V R+L+ E K T ++M+TARDS+ + + G D GADDY++KPFA++E+ R+ A+ RR
Sbjct: 64 VTRRLQTE--KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQD 121
Query: 122 -GLQTRVLETG---DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ +V G DL N V R + L +L LM V+TR++L +
Sbjct: 122 IESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLS 181
Query: 178 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
VW +E +++ + V+I LR +D P IQT G+GY I
Sbjct: 182 NVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225
>gi|729232|sp|Q03756|CUTR_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN
CUTR (DEFECTIVE MELC1 SUPPRESSOR PROTEIN)
>gi|98986|pir||S15274 cutR protein - Streptomyces
lividans >gi|581687|emb|CAA41599| (X58793) cutR protein
[Streptomyces lividans] >gi|2815348|emb|CAA16471|
(AL021530) two-component regulator CutR [Streptomyces
coelicolor]
Length = 217
Score = 132 bits (328), Expect = 3e-30
Identities = 85/221 (38%), Positives = 122/221 (54%), Gaps = 5/221 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV+ED +A + L AVD DG L V+++D +VLD +LP + G
Sbjct: 1 MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+VCRK+ E T VLMLTA + +++ G + GADDYL KPFA E+ R+ AL RR
Sbjct: 61 DVCRKIV-ELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRT 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
VLE ++ + + EV R GK +QL P +L+ LM + AVV+ + L + W
Sbjct: 120 SVPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAW 179
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
E P ++ +RV + LR + +P P+I T G GYRI
Sbjct: 180 DENTDPFTNVVRVTVMTLRRKLGEP---PVIVTVPGSGYRI 217
>gi|1652523|dbj|BAA17444| (D90906) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 234
Score = 131 bits (327), Expect = 4e-30
Identities = 76/227 (33%), Positives = 131/227 (57%), Gaps = 12/227 (5%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL+++D + + L L +GH +D A G TGL +A+ ++D ++LD LP + G+E+
Sbjct: 4 ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
CR++R TPVL LTA+D+LD+++ G D+G DDYLIKPF L+E+ R+ AL RR
Sbjct: 64 CRQIRILGHS-TPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQSH 122
Query: 123 LQTRVLETGDLEYNL-----DTLEVRR-----RGKLLQLNPTGLKILQALMEATPAVVTR 172
+T G ++ NL +L+V +G+ + L+ + +L ++A +++
Sbjct: 123 GETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSH 182
Query: 173 QDLETRVW-GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
+++ + +W GE P S+ L + LR +++P LI + +G GY
Sbjct: 183 EEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGY 229
>gi|6458493|gb|AAF10359.1|AE001933_3 (AE001933) response regulator,
OmpR/PhoB family [Deinococcus radiodurans]
Length = 222
Score = 131 bits (327), Expect = 4e-30
Identities = 82/223 (36%), Positives = 123/223 (54%), Gaps = 5/223 (2%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL+IEDN DI + LE+ G+ V A DG+TGL A + D ++LDL LP DG E
Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFDGAE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V R+LR + P+++LTA D++D K+ ++GADDY+ KPF +E+ R+ R +
Sbjct: 64 VARRLRKTS--SVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ 121
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
V+ G LE + G ++L+P +L L V +RQ++E VW
Sbjct: 122 --HGEVITIGALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN 179
Query: 182 EELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
ELP +S+ + VH+ +RA + +I+T GIGY + TP
Sbjct: 180 GELPSNSNVVDVHMANMRAKLRDLDGYGVIRTVRGIGYALKTP 222
>gi|6002654|gb|AAF00081.1|AF095713_1 (AF095713) response regulator
MucR [Streptococcus pyogenes]
Length = 228
Score = 131 bits (326), Expect = 6e-30
Identities = 85/224 (37%), Positives = 126/224 (55%), Gaps = 7/224 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+IL+IED ++A + L+ G+ V +G GL A+ EFD I+LDL LP MDG E
Sbjct: 4 KILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMDGFE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V R+L+ E K T ++M+TARDS+ + + G D GADDY++KPFA++E+ R+ A+ RR
Sbjct: 64 VTRRLQTE--KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQD 121
Query: 122 -GLQTRVLETG---DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ +V G DL N V R + L +L LM V+TR++L +
Sbjct: 122 IESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLS 181
Query: 178 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
VW +E +++ + V+I LR +D P IQT G+GY I
Sbjct: 182 NVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225
>gi|387603 (M95680) putative [Fremyella diplosiphon]
Length = 651
Score = 130 bits (324), Expect = 1e-29
Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 7/227 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED+ + L L + VD DG G E+D I+LD+ LP +DGI
Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+C++ R + P+L+LTA+D++ K+ G D+GADDY++KPF E+ R+ AL RRG
Sbjct: 61 SLCKRFRAQGYT-VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRG 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+L GDL N T EV G L L +L+ L+ V + ++L ++W
Sbjct: 120 SNNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179
Query: 181 -GEELPDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIATP 223
E+ P ++R H+ LR P D I T HG GY + P
Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHD--FIATMHGRGYYLKAP 224
Score = 55.0 bits (130), Expect = 5e-07
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
++++++D+ D L L+ G V AD + DA+VLD+N+P ++G E
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRL 113
+C+ LR++ ++ PVL L+ + F G DDYL KP E+ R+
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI 639
>gi|509815 (U01971) MtrA [Mycobacterium tuberculosis]
Length = 225
Score = 130 bits (324), Expect = 1e-29
Identities = 81/224 (36%), Positives = 119/224 (52%), Gaps = 4/224 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV++D++ +A L L G DG L D ++LDL LPGM+GI+
Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VCR LR A P++MLTA+ + + G +SGADDY++KPF +E+ R+ A RR
Sbjct: 64 VCRVLR--ADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 121
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
+L D+E ++ +V R G+ + L P +L AL V TR L +VWG
Sbjct: 122 DEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG 181
Query: 182 EELP-DSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 223
P D+ + VH+ LRA V+K P + ++ T G+GY+ P
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGPP 225
>gi|417621|sp|Q01473|RCAC_FREDI RCAC PROTEIN >gi|282227|pir||S27576
rcaC protein - Calothrix sp >gi|423999|pir||A47210
complementary chromatic adaptation protein RcaC -
Fremyella diplosiphon
Length = 632
Score = 130 bits (324), Expect = 1e-29
Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 7/227 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED+ + L L + VD DG G E+D I+LD+ LP +DGI
Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+C++ R + P+L+LTA+D++ K+ G D+GADDY++KPF E+ R+ AL RRG
Sbjct: 61 SLCKRFRAQGYT-VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRG 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+L GDL N T EV G L L +L+ L+ V + ++L ++W
Sbjct: 120 SNNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179
Query: 181 -GEELPDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIATP 223
E+ P ++R H+ LR P D I T HG GY + P
Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHD--FIATMHGRGYYLKAP 224
Score = 54.7 bits (129), Expect = 7e-07
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
++++++D+ D L L+ G V AD + DA+VLD+N+P ++G E
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKP 103
+C+ LR++ ++ PVL L+ + F G DDYL KP
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKP 629
>gi|2072713|emb|CAB08347| (Z95121) mtrA [Mycobacterium tuberculosis]
Length = 228
Score = 130 bits (324), Expect = 1e-29
Identities = 81/224 (36%), Positives = 119/224 (52%), Gaps = 4/224 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV++D++ +A L L G DG L D ++LDL LPGM+GI+
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VCR LR A P++MLTA+ + + G +SGADDY++KPF +E+ R+ A RR
Sbjct: 67 VCRVLR--ADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 124
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
+L D+E ++ +V R G+ + L P +L AL V TR L +VWG
Sbjct: 125 DEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG 184
Query: 182 EELP-DSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 223
P D+ + VH+ LRA V+K P + ++ T G+GY+ P
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGPP 228
>gi|4539212|emb|CAB39870.1| (AL049497) putative two component
response regulator [Streptomyces coelicolor]
Length = 221
Score = 129 bits (322), Expect = 2e-29
Identities = 77/223 (34%), Positives = 119/223 (52%), Gaps = 7/223 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL++ED IA+ + L G ADG A+ FD +VLD+ LPG DG
Sbjct: 3 RILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGLPGRDGFT 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLN-ALSRRG 120
V R+LR EAR TPV++LTARDS+ + + G + GADD++ KPF +E+ R+ L
Sbjct: 63 VLRELR-EARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ + VL +G L +L T R G+ + L +L+ + V++R+ + + VW
Sbjct: 122 RAPEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
G + P S+ + V++ LR K ++T G+GYR+ T
Sbjct: 182 GYDFDPGSNIVDVYVRALR----KKLGARQVETVRGMGYRLPT 220
>gi|1055347 (U38917) response regulator PhoB [Synechococcus WH7803]
Length = 234
Score = 129 bits (321), Expect = 2e-29
Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 12/229 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHE---FDAIVLDLNLPGMD 58
++LV+ED+ I + + L G V +G + L D +VLDL LPG+
Sbjct: 5 KLLVVEDDDSIRETVEEALRAEGFEVKSCGNGADAMALLSAPNTEGVDLLVLDLMLPGLG 64
Query: 59 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 118
G+++CR+LR + TPVL+++ARDS +++ G + GADDYL+KPF L+E+ R AL R
Sbjct: 65 GLDLCRQLR-KLNNHTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLR 123
Query: 119 RGKGLQT------RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 172
R + + + +V++TG+L V R G+ L L+P KIL+ L+ V +R
Sbjct: 124 RSQQIASVPSEDRQVVQTGNLCLYAQECRVTRDGEDLTLSPKEYKILELLIRNPKRVWSR 183
Query: 173 QDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYR 219
L R+WG + + D+ ++ VHI LR + ++P I+T G GYR
Sbjct: 184 DQLLERIWGIDFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYR 232
>gi|2769532|emb|CAA11074| (AJ223073) phosphate regulatory protein
[Bradyrhizobium japonicum]
Length = 235
Score = 127 bits (317), Expect = 6e-29
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 3/222 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RI+V+ED + L LE G+ V+ G H D IVLD LPG+ GIE
Sbjct: 4 RIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLSGIE 63
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+CR+LR KQ P++MLTAR ++ G +GADDY++KPF++ E+ R+ L RR
Sbjct: 64 LCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123
Query: 121 KGLQ-TRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ VL GD+E + D V R G+ + L PT ++L+ +E V +R+ L V
Sbjct: 124 SPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183
Query: 180 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
WG ++ D ++ VHI LR +++ + I+T G GY +
Sbjct: 184 WGRDIYIDERTVDVHIGRLRKLLNLGREQDPIRTVRGAGYAL 225
>gi|2687343|emb|CAA15884| (AL020958) two-component system regulator
[Streptomyces coelicolor]
Length = 228
Score = 127 bits (316), Expect = 8e-29
Identities = 81/233 (34%), Positives = 122/233 (51%), Gaps = 13/233 (5%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAV--VHEFDAIVLDLNLPGMD 58
MR+L++ED++ +AA L L G V A G L V V F ++LDL LP D
Sbjct: 1 MRLLLVEDDNHVAAALSAILARHGFDVTHARSGEEALQALVPEVDGFGVVLLDLGLPDQD 60
Query: 59 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 118
G EVC K+R R TPV+M+TAR + +++ G + GADDY++KP+ E+ R++A+SR
Sbjct: 61 GYEVCGKIRK--RTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSR 118
Query: 119 R-----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 173
R G V+ G + L T +V G ++QL +L L + V R+
Sbjct: 119 RTAHEDATGSTETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRRE 178
Query: 174 DLETRVWGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 225
+ + VW + +L VH+ LR+ + P LI+T G+GYR+ P A
Sbjct: 179 QIISEVWRTSWEGTGRTLEVHVASLRSKLHMP---ALIETVRGVGYRLVAPTA 228
>gi|135529|sp|P22104|TCTD_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN
TCTD >gi|96863|pir||A33861 trans-activating
transcriptional regulatory protein tctD - Salmonella
typhimurium >gi|295218 (M28368) membrane associated
regulatory protein [Salmonella typhimurium]
Length = 224
Score = 127 bits (315), Expect = 1e-28
Identities = 88/226 (38%), Positives = 129/226 (56%), Gaps = 7/226 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L+ EDN ++A L L + G AVD DG+ HL + VLD+N+PGMDG+
Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60
Query: 61 EVCRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 119
EV ++LR R QT PVL+LTAR ++ +++ G + GADDYL KPF L+E++ RL AL RR
Sbjct: 61 EVVQRLRK--RGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
G V + G+L ++ D +G+ L L P +L LM V+RQ L +V
Sbjct: 119 SAGQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQV 177
Query: 180 WG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
+ + +S+ ++IH LR + + DV I T G+GY + D
Sbjct: 178 FSLNDEVSPESIELYIHRLRKKL-QGSDV-RITTLRGLGYVLERGD 221
>gi|4982229|gb|AAD36722.1|AE001807_13 (AE001807) response regulator
DrrA [Thermotoga maritima]
Length = 247
Score = 126 bits (313), Expect = 2e-28
Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 9/231 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ I +G L + G+ V A DG L +A + D ++D+ LPG+DG E
Sbjct: 13 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 72
Query: 62 VCRKLRN-EARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 119
+ RK+R+ E K TPV+ L+A+ +K+ G + GADDY+ KPF+++E+ R+ A+ RR
Sbjct: 73 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 132
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
K + + + DLE +++ EV+ RGK + L P ++L+ L E V +R
Sbjct: 133 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 192
Query: 175 LETRVWG-EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 223
L ++WG + D+ ++ VHI LR +++ P + I T G GY+ P
Sbjct: 193 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDP 243
>gi|538802|pir||B40656 regulatory protein pmrA - Salmonella
typhimurium (strain LT2)
Length = 222
Score = 126 bits (313), Expect = 2e-28
Identities = 80/226 (35%), Positives = 120/226 (52%), Gaps = 8/226 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED++ + L + G+A D + H + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++R + + PVL+LTARD+L++++TG D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLTRIRQK-KYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 179
L G+L N+ + R G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 180 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
W E P +++L VHIH LR V K I+T G GY + +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----SRIRTVRGFGYMLVATE 220
>gi|1575577 (U67196) DNA-binding response regulator [Thermotoga
maritima]
Length = 239
Score = 126 bits (313), Expect = 2e-28
Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 9/231 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ I +G L + G+ V A DG L +A + D ++D+ LPG+DG E
Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64
Query: 62 VCRKLRN-EARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 119
+ RK+R+ E K TPV+ L+A+ +K+ G + GADDY+ KPF+++E+ R+ A+ RR
Sbjct: 65 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
K + + + DLE +++ EV+ RGK + L P ++L+ L E V +R
Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184
Query: 175 LETRVWG-EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATP 223
L ++WG + D+ ++ VHI LR +++ P + I T G GY+ P
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDP 235
>gi|1736640|dbj|BAA15797| (D90836) Transcriptional activator protein
CopR. [Escherichia coli]
Length = 238
Score = 125 bits (312), Expect = 2e-28
Identities = 75/203 (36%), Positives = 116/203 (56%), Gaps = 4/203 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL+IEDN + L E G+ +D +DG GL+LA+ ++ I+LD+ LPGMDG
Sbjct: 38 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++ + LR KQTPV+ LTARDS+D+++ G DSGA+DYL+KPF+ E+ R+ A R+
Sbjct: 98 QILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 155
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
L + LE L + + V R + L ++L L ++ R + + +W
Sbjct: 156 HALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 214
Query: 181 GEEL-PDSDSLRVHIHGLRAVVD 202
G D++++ V I LRA VD
Sbjct: 215 GINFDSDTNTVDVAIRRLRAKVD 237
>gi|4481749|gb|AAD21216| (AF007865) BacR [Bacillus licheniformis]
Length = 238
Score = 125 bits (311), Expect = 3e-28
Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 11/228 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+R+ + +D +I L YL+ + VD A DG L L + + ++LD+ +P +DGI
Sbjct: 4 IRVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 119
EVCR++RN P+LMLTA+D +K+ G GADDY+ KPF++ EV R+ A+ RR
Sbjct: 64 EVCRRMRNHT--NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRF 121
Query: 120 ------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 173
+ + +++ L +L T V G+ + L ++L+ V T+
Sbjct: 122 LVLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKT 181
Query: 174 DLETRVWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYR 219
L W ++ + D +++ VHI LR ++ P D IQT GIGY+
Sbjct: 182 QLFRNAWSDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYK 229
>gi|6466297|gb|AAF12879.1|AF022186_1 (AF022186) unknown [Cyanidium
caldarium]
Length = 249
Score = 125 bits (311), Expect = 3e-28
Identities = 75/234 (32%), Positives = 129/234 (55%), Gaps = 23/234 (9%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+L+++D ++I L L G++V A +G L + H D I+LD+ +P +DG V
Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYGV 73
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
C+++R E+ P++MLTA + + +K+TG + GADDY+IKPF+ +E+E R+ ++ RR
Sbjct: 74 CQEIRKES--DIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR--- 128
Query: 123 LQTR-----------VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 171
+QTR + +TG L +L+ ++ + +L++L +L+ L+ + +
Sbjct: 129 IQTRNAKLKPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELLVSQSGKAFS 188
Query: 172 RQDLETRVWG------EELPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGY 218
R + VWG E + D+ + VHI LRA + D P + LI T G GY
Sbjct: 189 RSKILKEVWGYKLSKHEPIADTRIVDVHISRLRAKLEDDPTNPTLILTARGTGY 242
>gi|1073570|pir||S52257 pcoR protein - Escherichia coli
>gi|619132|emb|CAA58529| (X83541) pcoR [Escherichia
coli]
Length = 226
Score = 125 bits (310), Expect = 4e-28
Identities = 75/218 (34%), Positives = 115/218 (52%), Gaps = 2/218 (0%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL++ED L L E G+ D +G GL A ++D I+LD+ LP +DG +
Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+ LR E+ + PVL LTA+D++ +K+ G + GADDYLIKPF E+ R+ L RR +
Sbjct: 63 IISALR-ESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
V D+ ++ V R GK + L +L+ L++ T V+ R + + VW
Sbjct: 122 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181
Query: 182 EEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
D++ + V + LR+ +D F+ LI T G GY
Sbjct: 182 MNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGY 219
>gi|1314043|emb|CAA97378| (Z73101) hypothetical protein Rv0903c
[Mycobacterium tuberculosis]
Length = 236
Score = 125 bits (310), Expect = 4e-28
Identities = 81/221 (36%), Positives = 118/221 (52%), Gaps = 5/221 (2%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
R+LV++D+SD+ A+L L G V A DG L A + DAIVLD+N+P +DG+
Sbjct: 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V LR PV +L+AR S+D+++ G ++GADDYL+KPF L E+ R+ AL RR
Sbjct: 72 VVTALR-AMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 130
Query: 122 GLQTRVLET---GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
T ET G LE ++ R G + L +L L E AV++R L
Sbjct: 131 STATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLEL 190
Query: 179 VWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
VWG + D++ + V I LR ++ L+ T G+G+
Sbjct: 191 VWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGF 231
>gi|1575690 (U70379) response regulator [Synechococcus PCC7942]
Length = 223
Score = 124 bits (309), Expect = 5e-28
Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 4/222 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L++ED D+ L L + ++VD+ +G + + + A+VLD +PG G+
Sbjct: 1 MRLLLLEDEPDLGHALHKALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGCSGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+C++LR +A+ TPVL+LTARD L + + G D+GADDYL+KPF L E+ R+ AL RR
Sbjct: 61 EICQRLR-QAQDSTPVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRS 119
Query: 121 KGLQTRVLETG-DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
QT +L+ G L+ T++V + L ++L+ALM +++R L ++
Sbjct: 120 PQTQTPLLQVGVRLDPAQATVQVDDYSP-MPLTAREFQLLEALMHHPGQILSRDQLLDQL 178
Query: 180 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
W + P S+ + + LR + LI+T +G GYR+
Sbjct: 179 WPMDAEPSSNVVAAQVRLLRRKLATYQADLLIETVYGFGYRL 220
>gi|548535|sp|P36556|BASR_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN
BASR/PMRA >gi|295211 (L13395) pmrA [Salmonella
typhimurium]
Length = 222
Score = 124 bits (308), Expect = 7e-28
Identities = 79/226 (34%), Positives = 119/226 (51%), Gaps = 8/226 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED++ + L + G+A D + H + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++R + + PVL+LTA D+L++++TG D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLTRIRQK-KYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 179
L G+L N+ + R G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 180 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
W E P +++L VHIH LR V K I+T G GY + +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----SRIRTVRGFGYMLVATE 220
>gi|4726009|emb|CAB41738.1| (AL049731) putative two component
response regulator [Streptomyces coelicolor]
Length = 213
Score = 124 bits (308), Expect = 7e-28
Identities = 77/198 (38%), Positives = 109/198 (54%), Gaps = 5/198 (2%)
Query: 26 AVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSL 85
A D A DG T L L V+ +D VLD ++PG G E+ ++ P+LMLTA D L
Sbjct: 8 AADIAGDGDTALELLSVNAYDIAVLDRDIPGPSGDEIAERIVASGSGM-PILMLTAADRL 66
Query: 86 DNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKGLQTRVLETGDLEYNLDTLEVRRR 145
D+K +GF GADDYL KPF LQE+ +RL AL RR + V E L + EV R
Sbjct: 67 DDKASGFGLGADDYLTKPFELQELALRLRALDRRRAHSRPPVREIAGLRLDPFRREVYRG 126
Query: 146 GKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEEL-PDSDSLRVHIHGLRAVVDKP 204
G+ + L +L+ L+ A VV+ ++L R W E P ++++R+ + LR + +P
Sbjct: 127 GRYVALTRKQFAVLEVLVAAEGGVVSAEELLERAWDENADPFTNAVRITVSALRKRLGEP 186
Query: 205 FDVPLIQTRHGIGYRIAT 222
+I T G+GYRI T
Sbjct: 187 ---GIIATVPGVGYRIDT 201
>gi|1731207|sp|Q11156|RGX3_MYCTU SENSORY TRANSDUCTION PROTEIN REGX3
>gi|1449289|emb|CAB00952| (Z77162) regX3 [Mycobacterium
tuberculosis] >gi|2190480|emb|CAA73958| (Y13628) RegX3
[Mycobacterium tuberculosis]
Length = 227
Score = 123 bits (307), Expect = 9e-28
Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 8/224 (3%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+L++ED +A L L + G DG L D ++LDL LPGM G +V
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 120
C++LR AR PV+M+TARDS +K+ G + GADDY+ KP++ +E+ R+ A+ RRG
Sbjct: 64 CKQLR--ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121
Query: 121 --KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+ VLE+G + +++ V G + L +L+ LM + V+TR L R
Sbjct: 122 DDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 181
Query: 179 VWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRI 220
VWG + + D+ +L VH+ LR+ ++ P + + T G+GY++
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225
>gi|1805445|dbj|BAA09007| (D50453) homologue of alkaline phosphatase
synthesis transcriptional regulatory protein PhoP of B.
subtilis [Bacillus subtilis] >gi|2632676|emb|CAB12183|
(Z99106) similar to two-component response regulator
[YclK] [Bacillus subtilis]
Length = 227
Score = 123 bits (307), Expect = 9e-28
Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 16/229 (6%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL+IEDN + + + G +F DG+ G +D I+LD+ LP MDG+
Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+CRK+R + P++MLTA+D+ +++ GF+ GADDY+ KPF+ + R+ A+ RR
Sbjct: 61 TICRKIRETS--TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRY 118
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLL------QLNPTGLKILQALMEATPAVVTRQD 174
K V++ +E T+ + R LL L P +L L++ V +R+
Sbjct: 119 KATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178
Query: 175 LETRVWGEEL-PDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYR 219
L +VWG + D ++ VHI LR A DKPF + T G+GY+
Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPF----LYTVWGVGYK 223
>gi|1869995|emb|CAB06846| (Z92539) hypothetical protein Rv1033c
[Mycobacterium tuberculosis] >gi|2979514|gb|AAC06144.1|
(U88959) response regulator homolog TrcR [Mycobacterium
tuberculosis]
Length = 257
Score = 123 bits (307), Expect = 9e-28
Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 6/228 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+R+L+++D + + L G V+ A DG + D +VLD+ LP +DG+
Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 91
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+ R++R E+ TP L LTARDS+ +++TG SGADDY+ KPF+L+E+ RL L RR
Sbjct: 92 EILRRVR-ESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 150
Query: 121 KGLQ---TRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
L+ L GDL + + EV R G + L+ T ++L+ LM ++R ++
Sbjct: 151 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 210
Query: 178 RVWGEELPDSDSL-RVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
RVW + S+ ++I LR +D + P+I T GIGY + P+
Sbjct: 211 RVWNYDFAGRTSIVDLYISYLRKKIDSDRE-PMIHTVRGIGYMLRPPE 257
>gi|6685724|sp|Q52990|PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|152404 (M96261) phosphate
regulatory protein [Sinorhizobium meliloti]
Length = 227
Score = 123 bits (306), Expect = 1e-27
Identities = 75/222 (33%), Positives = 121/222 (53%), Gaps = 3/222 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+I V+ED ++ L LE G VD G D ++LD LPG+ GIE
Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+CR+LR ++ P++MLTAR ++ G +GADDY++KPF+ E+ R+ A+ RR
Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123
Query: 121 K-GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
K + + +L GD+E + +T V RR + ++L PT ++L+ LM + V +R L V
Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183
Query: 180 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
WG ++ D ++ VH+ LR ++ +I+T G GY +
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSL 225
>gi|6460139|gb|AAF11874.1|AE002064_5 (AE002064) response regulator
[Deinococcus radiodurans]
Length = 220
Score = 123 bits (306), Expect = 1e-27
Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 8/222 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L++ED+ IA L E G+AV +A G GL A++ EF +VLD+ LPG+DG
Sbjct: 1 MRLLLVEDDPRIAEPTAAALREAGYAVTWAQTGPEGLEAAMLGEFPLVVLDVMLPGLDGF 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+ +LR EA +P+L LTAR + +++ G D G D YL+KPFA+ E+ +L AL+RR
Sbjct: 61 EIAGQLR-EAEVDSPILFLTARGEVSDRVQGLDLGGDAYLVKPFAMPELLAQLRALTRRE 119
Query: 121 KGLQTRVLETGDLEYNLDTL--EVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+G + LDT+ V G+ + + ++L AL A +TR++L R
Sbjct: 120 RGQSAPRVSFAGGRGGLDTVARTVTWDGQEVAVTGREYELLSALALAPERWLTREELLDR 179
Query: 179 VWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 219
VWG E ++ + V++ LR + I + G GYR
Sbjct: 180 VWGPEFGGEARIVDVYVRYLR----RKLAPEAISSERGRGYR 217
>gi|6862582|gb|AAD30120.2| (AF135389) DNA binding response regulator
RpaA [Tolypothrix PCC7601]
Length = 247
Score = 123 bits (306), Expect = 1e-27
Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 10/231 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILVI+D+ I+ + LE G+ V A DG+ G LA+ + D I+LDL LP +DG
Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62
Query: 62 VCRKLRNEARK-QTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
VC++LR + R + PVLMLTA +K+ GF++GADDYL KPF ++E+ R+ AL RR
Sbjct: 63 VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122
Query: 121 KGL-----QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
+ + +L G L + E + ++L ++L L++ V+ ++
Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEI 182
Query: 176 ETRVWGEELPDSD--SLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATP 223
VWG + PD D ++RVHI LR ++ P I+T +G GY + P
Sbjct: 183 LREVWGYD-PDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELP 232
>gi|2190436|emb|CAA73956| (Y13627) RegX3 [Mycobacterium bovis BCG]
Length = 227
Score = 123 bits (305), Expect = 2e-27
Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 8/224 (3%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+L++ED +A L L + G DG L D ++LDL LPGM G +V
Sbjct: 4 VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 120
C++LR AR PV+M+TARDS +K+ G + GADDY+ KP++ +E+ R+ A+ RRG
Sbjct: 64 CKQLR--ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121
Query: 121 --KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+ VLE+G + +++ V G + L +L+ LM + V+TR L R
Sbjct: 122 DDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 181
Query: 179 VWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRI 220
VWG + + D+ +L VH+ LR+ ++ P + + T G+GY++
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225
>gi|6467529|gb|AAF13177.1|AF181078_1 (AF181078) response regulator
homolog [Rhodobacter capsulatus]
Length = 237
Score = 123 bits (305), Expect = 2e-27
Identities = 79/226 (34%), Positives = 123/226 (53%), Gaps = 3/226 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRIL++ED+ + ++ L V G G+ LA ++++D I+LDLNLP M+G+
Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EV R+LR AR TP+L+LT D +NK+ GF GADDY+ KPF +E+ R++A+ RR
Sbjct: 61 EVLRQLRL-ARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRS 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
KG ++ TG + NLD V GK + L ++L+ L +T++ ++
Sbjct: 120 KGHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179
Query: 181 -GEELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
G + P+ + V I LR + + I+T G GY + PD
Sbjct: 180 GGMDEPELKIIDVFICKLRKKLAEVTGGENYIETVWGRGYVLRDPD 225
>gi|466194|sp|P35163|RESD_BACSU TRANSCRIPTIONAL REGULATORY PROTEIN
RESD >gi|629124|pir||S45559 hypothetical protein X17 -
Bacillus subtilis >gi|410141 (L09228) ORFX17 [Bacillus
subtilis] >gi|2634747|emb|CAB14244| (Z99116)
two-component response regulator [Bacillus subtilis]
Length = 240
Score = 122 bits (304), Expect = 2e-27
Identities = 79/229 (34%), Positives = 120/229 (51%), Gaps = 13/229 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D + I L YLE +A+D A +G + + +D I+LDL +PG DGIE
Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VCR++R +K TP++MLTA+ N++ GF++G DDY++KPF+ +EV +R+ AL RR
Sbjct: 68 VCRQIRE--KKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAS 125
Query: 122 GLQ--------TRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 173
VL L + D V G + L P ++L L + V R+
Sbjct: 126 QTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDRE 185
Query: 174 DLETRVWGEE-LPDSDSLRVHIHGLRAVVDK--PFDVPLIQTRHGIGYR 219
L VW E D ++ H+ LR ++K P I T G+GY+
Sbjct: 186 KLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYK 234
>gi|2440114|emb|CAB16701| (Z99494) two-component regulator
[Mycobacterium leprae]
Length = 233
Score = 122 bits (304), Expect = 2e-27
Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 5/221 (2%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
R+LV++D+SD+ A+L L G V A DG L A DAIVLD+N+P +DG+
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVS 68
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V LR PV +L+AR S+D+++ G ++GADDYL+KPF L E+ R+ AL RR
Sbjct: 69 VVTALR-AMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127
Query: 122 GLQTRVLET---GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
T ET G LE ++ R G + L +L L E V++R L
Sbjct: 128 ATATSSSETIAVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLEL 187
Query: 179 VWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
VWG + D++ + V I LR ++ L+ T G+G+
Sbjct: 188 VWGYDFAADTNVVDVFIGYLRRKLEANSGPRLLHTVRGVGF 228
>gi|6460836|gb|AAF12540.1|AE001826_9 (AE001826) response regulator
[Deinococcus radiodurans]
Length = 219
Score = 122 bits (303), Expect = 3e-27
Identities = 80/223 (35%), Positives = 121/223 (53%), Gaps = 8/223 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L++ED+ IA LEE GH + DGV GL A FDA++LD+ LPG+ G
Sbjct: 1 MRLLLVEDDPRIALPTVRALEEAGHEAAWEPDGVRGLAAARAGAFDALLLDVMLPGLGGF 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+ R+LR + P++ LTAR L +++ G D G D YL+KPF L E+ L A+ RR
Sbjct: 61 ELARELR-AGGAEVPIVFLTARSDLADRVEGLDLGGDAYLVKPFELPELLAVLRAVVRRR 119
Query: 121 KGLQTRVLETGDLEYNLDT--LEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+ + +E + LDT +V +G+L L +L+AL + TR++L T+
Sbjct: 120 AAMCSARIEFAGGQGRLDTSGRQVWWQGELTGLTAREYALLEALTLSRERWFTREELLTK 179
Query: 179 VWGEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
VWG E D + V++ LR + +Q+ G+GYR+
Sbjct: 180 VWGPEFSGDMRVVDVYVSYLR----RKLAPEAVQSSRGLGYRV 218
>gi|2145537|pir||S70164 pcoR protein - Escherichia coli plasmid
pRJ1004
Length = 226
Score = 122 bits (302), Expect = 4e-27
Identities = 74/218 (33%), Positives = 114/218 (51%), Gaps = 2/218 (0%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL++ED L L E G+ D +G GL A ++D I+LD+ LP +DG +
Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+ LR E+ + PVL LTA+D++ +K+ G + GA DYLIKPF E+ R+ L RR +
Sbjct: 63 IISALR-ESGHEEPVLFLTAKDNVRDKVKGLELGAADYLIKPFDFTELVARVRTLLRRAR 121
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
V D+ ++ V R GK + L +L+ L++ T V+ R + + VW
Sbjct: 122 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181
Query: 182 EEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
D++ + V + LR+ +D F+ LI T G GY
Sbjct: 182 MNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGY 219
>gi|400783|sp|P13792|PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS
TRANSCRIPTIONAL REGULATORY PROTEIN PHOP
>gi|40056|emb|CAA47908| (X67676) phoP [Bacillus
subtilis]
Length = 240
Score = 121 bits (300), Expect = 6e-27
Identities = 83/234 (35%), Positives = 126/234 (53%), Gaps = 13/234 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D I L LE G+ V A+DG L A + D IVLD+ LP +DGIE
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VC++LR + + P+LMLTA+D +K+ G + GADDY+ KPF+ +EV R+ A+ RR +
Sbjct: 64 VCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122
Query: 122 ------GLQTRVLE----TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 171
++ +E GDL+ D E + L+L P ++L L V+T
Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182
Query: 172 RQDLETRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVPL-IQTRHGIGYRIATP 223
R L + VW + D+ + VHI LR ++ P+ I+T G+GY++ P
Sbjct: 183 RDLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEP 236
>gi|2293270 (AF008220) signal transduction regulator [Bacillus
subtilis] >gi|2635376|emb|CAB14871| (Z99118)
two-component response regulator [Bacillus subtilis]
Length = 240
Score = 121 bits (300), Expect = 6e-27
Identities = 83/234 (35%), Positives = 126/234 (53%), Gaps = 13/234 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D I L LE G+ V A+DG L A + D IVLD+ LP +DGIE
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VC++LR + + P+LMLTA+D +K+ G + GADDY+ KPF+ +EV R+ A+ RR +
Sbjct: 64 VCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122
Query: 122 ------GLQTRVLE----TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 171
++ +E GDL+ D E + L+L P ++L L V+T
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182
Query: 172 RQDLETRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVPL-IQTRHGIGYRIATP 223
R L + VW + D+ + VHI LR ++ P+ I+T G+GY++ P
Sbjct: 183 RDLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEP 236
>gi|3401948|dbj|BAA32131| (AB011413) Orf3 [Streptomyces griseus]
Length = 224
Score = 120 bits (299), Expect = 8e-27
Identities = 81/222 (36%), Positives = 116/222 (51%), Gaps = 5/222 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L++ED+ D+ +G L + G A D A+D L + +D +VLD +P D +
Sbjct: 1 MRVLLVEDDDDLRDVIGAGLRDGGFAWDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
R A PVL LTA DSLD +L G +SGADDYL KPF+++E+ +R+ LSRR
Sbjct: 61 APLEG-RRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRA 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
L D+ ++ EVRR G LL L+P +LQ L+ VVTR L W
Sbjct: 120 SARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCW 179
Query: 181 GEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 221
E P S+ + + GLR + P L+ T G G+ ++
Sbjct: 180 DEMADPVSNVVDAVVAGLRRKLGSP---GLVHTVRGQGFLLS 218
>gi|584828|sp|P30843|BASR_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
BASR/PMRA >gi|478428|pir||JX0284 response-regulator BasR
protein - Escherichia coli >gi|216538|dbj|BAA03143|
(D14055) BasR [Escherichia coli]
Length = 222
Score = 120 bits (298), Expect = 1e-26
Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 8/222 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED++ + L + G+A D + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDTVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++R + + PVL+LTARD+L +K+ G D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLARIRQK-KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 179
L G+L N+ +V G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 180 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
W E P +++L VHIH LR V K I+T G GY +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216
>gi|1360982|pir||S56341 basR protein - Escherichia coli >gi|536957
(U14003) basR gene product [Escherichia coli]
>gi|1790552 (AE000483) transcriptional regulatory
protein, member of 2-component regulatory system,
[Escherichia coli]
Length = 222
Score = 120 bits (298), Expect = 1e-26
Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 8/222 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED++ + L + G+A D + +VLDL LP DG+
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
++R + + PVL+LTARD+L +K+ G D GADDYL+KPFAL+E+ R+ AL RR
Sbjct: 61 HFLARIRQK-KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV- 179
L G+L N+ +V G+ L L P +L LM + V R+ L +
Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179
Query: 180 -WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
W E P +++L VHIH LR V K I+T G GY +
Sbjct: 180 NWDNE-PSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216
>gi|2960189|emb|CAA18087.1| (AL022121) hypothetical protein Rv3765c
[Mycobacterium tuberculosis]
Length = 234
Score = 120 bits (298), Expect = 1e-26
Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 8/221 (3%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+LV++D +A + L G + A DG + + A D +VLD+ LP M G++V
Sbjct: 11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDV 70
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
KLR+E PVL+LTA+D++++++ G +G DDY+ KPF+++EV +RL AL RR G
Sbjct: 71 LHKLRSE-NPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRR-TG 128
Query: 123 LQT----RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+ T L GDL + D+ EV R G+ + L T ++L+ +M + V+++ + R
Sbjct: 129 VTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDR 188
Query: 179 VWGEELPD-SDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
VW + S+ + ++I LR +D + P+I T G GY
Sbjct: 189 VWSYDFGGRSNIVELYISYLRKKIDNGRE-PMIHTLRGAGY 228
>gi|2961074 (AF029846) TctD [Salmonella typhi]
Length = 223
Score = 120 bits (297), Expect = 1e-26
Identities = 87/226 (38%), Positives = 129/226 (56%), Gaps = 8/226 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L+ EDN ++A L L + G AVD + + HL + +VLD+N+PGMDG+
Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFERLAADHLLHSEMYALMVLDINMPGMDGL 60
Query: 61 EVCRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 119
EV ++LR R QT PVL+LTAR L +++ G + GADDYL KPF L+E++ RL AL RR
Sbjct: 61 EVVQRLRK--RGQTLPVLLLTAR-RLADRVKGLNVGADDYLPKPFELEELDARLRALLRR 117
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
GL V + G+L ++ D +G+ L L P +L LM V+RQ L +V
Sbjct: 118 SAGLVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQV 176
Query: 180 WG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
+ + +S+ ++IH LR + + DV + R G+GY + D
Sbjct: 177 FSLNDEVSPESIELYIHRLRKKL-QGSDVRITVLR-GLGYVLERGD 220
>gi|2952543 (AF051939) response regulator CtrA [Brucella abortus]
Length = 232
Score = 120 bits (297), Expect = 1e-26
Identities = 79/227 (34%), Positives = 124/227 (53%), Gaps = 3/227 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L+IED+S IA ++ L+ V G G+ L ++++D I+LDLNLP M G
Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EV R LR ++ +TP+L+L+ +++K+ G GADDY+ KPF E+ R++A+ RR
Sbjct: 61 EVLRTLRL-SKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRS 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
KG V+ TGDL NLD V G+ + L ++L+ L +T++ ++
Sbjct: 120 KGHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179
Query: 181 -GEELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPDA 225
G + P+ + V I LR +D + I+T G GY + PDA
Sbjct: 180 GGMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLREPDA 226
>gi|4768853|gb|AAD29647.1|AF124757_7 (AF124757) phosphate regulatory
protein PhoB [Zymomonas mobilis]
Length = 231
Score = 120 bits (297), Expect = 1e-26
Identities = 78/230 (33%), Positives = 127/230 (54%), Gaps = 9/230 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+R+L++ED+ +A L + ++ V DG L LA + D ++LD + G GI
Sbjct: 4 LRLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGI 63
Query: 61 EVCRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 119
EVCR+LR P++MLTAR D+++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123
Query: 120 GK-GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+ L L D+E +L + V+R G + + PT ++L+ LME V +R+ L
Sbjct: 124 IRPALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183
Query: 179 VWGEELPDSD----SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
+WG+ DSD ++ VHI LR +++ LI+T GY + T +
Sbjct: 184 IWGQ---DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALDTDE 230
>gi|1617255|emb|CAA47148| (X66587) phoP [Yersinia
pseudotuberculosis]
Length = 223
Score = 119 bits (296), Expect = 2e-26
Identities = 73/220 (33%), Positives = 123/220 (55%), Gaps = 2/220 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV+EDN+ + +L + E GH VD A D + H D ++DL LPG DG+
Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ R+ R+ ++ P+L+LTAR+S +K+ ++GADDY+ KPF L+EV R+ AL RR
Sbjct: 61 SLIRRWRSH-QENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRN 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
GL ++++E + +L E+ + ++L I++ L+ VV++ L +++
Sbjct: 120 IGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQLY 179
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 219
+ EL +S ++ V + LR + +I T G GYR
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYR 219
>gi|3860641|emb|CAA14542| (AJ235270) TRANSCRIPTIONAL ACTIVATOR
PROTEIN CZCR (czcR) [Rickettsia prowazekii]
Length = 237
Score = 119 bits (296), Expect = 2e-26
Identities = 79/226 (34%), Positives = 118/226 (51%), Gaps = 3/226 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L+IED S++A + L G D A+ GV GL L V +D ++LDL LP ++G
Sbjct: 1 MRVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKVGIYDLVILDLMLPDINGF 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+ +LR A+ +TP+L+L++ D K+T F SGADDYL KPF +E+ R+ A+ RR
Sbjct: 61 EILLRLR-AAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRS 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
KG + + NLDT V GK L L IL+ L+ ++T++ ++
Sbjct: 120 KGHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLY 179
Query: 181 GE-ELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
+ P+ + V I LR + D I T G GY + D
Sbjct: 180 STVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKEYD 225
>gi|4104599 (AF036965) putative response regulator [Lactobacillus
sakei]
Length = 237
Score = 119 bits (295), Expect = 2e-26
Identities = 75/230 (32%), Positives = 122/230 (52%), Gaps = 10/230 (4%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
ILV++D I L LE+ V A DG L +A+ +FD I+LDL LP +DGI V
Sbjct: 4 ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGIAV 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK- 121
+K+R EA+ +TP+++LTA+D+ +K+ G + GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 TKKIR-EAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTTQ 122
Query: 122 ------GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
+ + GDL + + ++ L L P ++L M V +R+ L
Sbjct: 123 PIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREKL 182
Query: 176 ETRVWGEELP-DSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATP 223
VWG + P ++ + + + LR + D P ++T G GY++ P
Sbjct: 183 LNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDP 232
>gi|730805|sp|P39663|SPHR_SYNP7 ALKALINE PHOSPHATASE SYNTHESIS
TRANSCRIPTIONAL REGULATORY PROTEIN SPHR
>gi|421362|pir||S32931 sensor protein sphS -
Synechococcus sp. (PCC 7942) >gi|391921|dbj|BAA02453|
(D13172) SphR [Synechococcus sp.]
Length = 257
Score = 118 bits (294), Expect = 3e-26
Identities = 79/233 (33%), Positives = 122/233 (51%), Gaps = 15/233 (6%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHL---------AVVHEFDAIVLDL 52
RILV+ED + I + L++ G VD AADG T L+ +V D +VLDL
Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84
Query: 53 NLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVR 112
LP ++G++ CR LR + P+LML+A+D+ +++ G + GADDYL KPF +E+ R
Sbjct: 85 MLPAVNGLDFCRLLRRQG-VTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143
Query: 113 LNALSRRGKGLQTR---VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAV 169
AL RR + VL L+ + V + L L+P ++L+ M V
Sbjct: 144 CRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRV 203
Query: 170 VTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRI 220
+R L ++WG + + DS ++ VHI LR ++ P + + T G GYR+
Sbjct: 204 WSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256
>gi|5830529|emb|CAB54572.1| (AJ006394) response regulator
[Streptococcus pneumoniae]
Length = 235
Score = 118 bits (294), Expect = 3e-26
Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 12/229 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
++L+++D I L +L + G + +G L LA FD I+LD+ LP +DG+E
Sbjct: 4 QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VC++LR + K TP++M++A+ +K+ + GADDYL KPF+ +E+ R+ A+ RR K
Sbjct: 64 VCKRLRAKGVK-TPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTK 122
Query: 122 GLQ-----TRVLET----GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 172
G Q + + G L+ + EV + KLL L P ++L LM+ +TR
Sbjct: 123 GEQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTR 182
Query: 173 QDLETRVWGEELPDSDSL-RVHIHGLR-AVVDKPFDVPLIQTRHGIGYR 219
+ L R+WG + L VHI LR + D P I+T G GY+
Sbjct: 183 ERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYK 231
>gi|6808396|emb|CAB70633.1| (AL137242) probable two-component
response regulator [Streptomyces coelicolor A3(2)]
Length = 222
Score = 118 bits (294), Expect = 3e-26
Identities = 78/225 (34%), Positives = 116/225 (50%), Gaps = 8/225 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L++ED +A +L L G+AVD DG+ GLH A +D ++LD+ LPG++G
Sbjct: 1 MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIMLPGLNGY 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA-LSRR 119
VC LR A P+LMLTA+D ++ G D+GADDYL KPF+ + R+ A L RR
Sbjct: 61 RVCAALR-AAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRR 119
Query: 120 GKGLQTRVLET-GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
G+G + GDL + V L +L+ L+ VV++ ++
Sbjct: 120 GQGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEH 179
Query: 179 VWGEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
VW D + + V++ LR + LI+T G GYR+ T
Sbjct: 180 VWDFAYDGDPNIVEVYVSALR----RKLRAGLIRTVRGAGYRLET 220
>gi|1621018|emb|CAA70004| (Y08758) PhoP protein [Yersinia pestis]
Length = 223
Score = 117 bits (291), Expect = 7e-26
Identities = 72/220 (32%), Positives = 122/220 (54%), Gaps = 2/220 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV+EDN+ + +L + E GH VD A D + H D ++DL LPG DG+
Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ R+ R+ ++ P+L+LTAR+S +K+ ++GADDY+ KPF L+EV R+ AL RR
Sbjct: 61 SLIRRWRSH-QENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRN 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
GL ++++E + +L E+ + ++L I++ L+ VV++ L +++
Sbjct: 120 IGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY 179
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 219
+ EL +S ++ V + LR + +I T GYR
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRSQGYR 219
>gi|73046|pir||RGBSAP alkaline phosphatase regulatory protein -
Bacillus subtilis >gi|143328 (M16775) phoP protein
(put.); putative [Bacillus subtilis]
Length = 241
Score = 117 bits (290), Expect = 9e-26
Identities = 83/235 (35%), Positives = 126/235 (53%), Gaps = 14/235 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D I L LE G+ V A+DG L A + D IVLD+ LP +DGIE
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VC++LR + + P+LMLTA+D +K+ G + GADDY+ KPF+ +EV R+ A+ RR +
Sbjct: 64 VCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122
Query: 122 ------GLQTRVLE----TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 171
++ +E GDL+ D E + L+L P ++L L V+T
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLT 182
Query: 172 RQDLETRVWGEELP-DSDSLRVHIHGLRAV-VDKPFDVPL-IQTRHGIGYRIATP 223
R L + VW + D+ + VHI LR ++ P+ I+T G+GY++ P
Sbjct: 183 RDLLLSAVWNYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEEP 237
>gi|3980223|emb|CAA10325.1| (AJ131213) response regulator
[Streptomyces coelicolor A3(2)]
>gi|4585590|emb|CAB40858.1| (AL049628) response
regulator [Streptomyces coelicolor]
Length = 234
Score = 117 bits (290), Expect = 9e-26
Identities = 84/233 (36%), Positives = 125/233 (53%), Gaps = 22/233 (9%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+L +ED+ I LE G AV DG++GL D +LD+ LPG+DG+ +
Sbjct: 7 VLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRADRPDIALLDVMLPGLDGVSL 66
Query: 63 CRKLRNEARKQTPVLMLTAR-DSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
CR++R+E+ PV+ML+AR DS+D L G ++GADDY+ KPF + R+ A+ RR
Sbjct: 67 CRRIRDES--TVPVIMLSARADSIDVVL-GLEAGADDYVTKPFDGAVLVARIRAVLRRFG 123
Query: 120 --GKGLQTR---------VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPA 168
G G +T VL GDLE + D +EVRR G+ + L PT +++L A
Sbjct: 124 HAGGGDRTEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGT 183
Query: 169 VVTRQDLETRVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
V++R L RVW D+ + VH+ LR + + I+T G GY++
Sbjct: 184 VLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQ----DRIETVRGFGYKL 232
>gi|5114230|gb|AAD40237.1|AF136709_1 (AF136709) response regulator
YycF [Staphylococcus aureus]
Length = 233
Score = 117 bits (290), Expect = 9e-26
Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 11/226 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+++V++D IA L L++ G+ V A DG + L E D ++LD+ LPG DG+E
Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
VCR++R + + P++MLTA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 64 VCREVRK--KYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHY 121
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
G T + D+ D +++RG+ ++L ++ L + V+TR+
Sbjct: 122 SQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREH 181
Query: 175 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGY 218
L VWG + D ++ V I LR + D P I TR G+GY
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227
>gi|6448492|emb|CAB61229.1| (Y15706) vanr protein [Bacillus
circulans]
Length = 231
Score = 117 bits (290), Expect = 9e-26
Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 11/228 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D DIA + YL+ + V L E D +LD+ LPG G+
Sbjct: 4 KILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGASGLS 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+C+K+R+ + P++MLTA+DS +K+TG GADDY+ KPF E+ R+ A RR K
Sbjct: 64 ICQKIRD--KYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121
Query: 122 GL------QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
++ L N++T E K L L PT IL+ L E VV+ + +
Sbjct: 122 KYSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQI 181
Query: 176 ETRVWGEEL--PDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 220
+WGEE ++++ VHI LR ++ D P I+T G+GY+I
Sbjct: 182 FHEIWGEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGYKI 229
>gi|6689205|emb|CAB65399.1| (AJ012052) VicR protein [Staphylococcus
aureus]
Length = 239
Score = 117 bits (290), Expect = 9e-26
Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 11/226 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+++V++D IA L L++ G+ V A DG + L E D ++LD+ LPG DG+E
Sbjct: 10 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 69
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
VCR++R + + P++MLTA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 70 VCREVRK--KYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHY 127
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
G T + D+ D +++RG+ ++L ++ L + V+TR+
Sbjct: 128 SQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREH 187
Query: 175 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGY 218
L VWG + D ++ V I LR + D P I TR G+GY
Sbjct: 188 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 233
>gi|6687469|emb|CAB64972.1| (AJ012050) VicR protein [Enterococcus
faecalis]
Length = 283
Score = 117 bits (290), Expect = 9e-26
Identities = 80/232 (34%), Positives = 123/232 (52%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D I+ + L + G+ V A DG L E D I+LDL LP MDG+E
Sbjct: 52 KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 111
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG- 120
V R++R P++M+TA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RRG
Sbjct: 112 VAREVRKT--HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGA 169
Query: 121 -KGLQTRV-----LETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ V L GDL + D V +RG+ ++L ++L L + V+TR+
Sbjct: 170 TNAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREH 229
Query: 175 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
L VWG + D ++ V + LR + D P + TR G+GY + P+
Sbjct: 230 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPE 281
>gi|1550635|emb|CAB02400| (Z80226) phoP [Mycobacterium tuberculosis]
Length = 247
Score = 116 bits (289), Expect = 1e-25
Identities = 78/227 (34%), Positives = 123/227 (53%), Gaps = 7/227 (3%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
R+LV++D ++I L L+ +G V A +G L A DA++LD+ +PGMDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-G 120
V R+LR + P L LTARDSL +K+ G G DDY+ KPF+L+EV RL + RR G
Sbjct: 82 VLRRLRADGI-DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 140
Query: 121 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
KG + L D+E + +T EV + G+ + L+PT +L+ + V+++ +
Sbjct: 141 KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 200
Query: 178 RVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
VW + D + + ++ LR +D + L+ T G+GY + P
Sbjct: 201 HVWRYDFGGDVNVVESYVSYLRRKIDTG-EKRLLHTLRGVGYVLREP 246
>gi|987095|emb|CAA60455| (X86780) response regulator [Streptomyces
hygroscopicus]
Length = 220
Score = 116 bits (288), Expect = 2e-25
Identities = 79/222 (35%), Positives = 114/222 (50%), Gaps = 6/222 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV ED+ +A + L + AVD AA + ++ +D ++LD +LP + G
Sbjct: 1 MRVLVAEDHRVLARTIATGLRRQAMAVDVAAAADEAERMCLLTAYDVLILDRDLPVLSGD 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDS-GADDYLIKPFALQEVEVRLNALSRR 119
EVCR+LR E + +LMLTA L +K+ G + GADDYL KPF E+ R+ LSRR
Sbjct: 61 EVCRRLR-ELQDPPRILMLTAAGELTDKIYGLTTLGADDYLAKPFDFSELVARVRTLSRR 119
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
VL + + EV G+ L+L P L +L L+ A A V+ +L V
Sbjct: 120 APKQPPTVLRFASITLDETRREVSVDGRPLELTPKELAVLHLLLVAGGAPVSHDELVRTV 179
Query: 180 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
W E L P + ++R + LR + P LI G GYR+
Sbjct: 180 WDEHLDPRTSAVRATVSRLRGKLGDP---GLILADKGEGYRL 218
>gi|5830538|emb|CAB54578.1| (AJ006397) response regulator
[Streptococcus pneumoniae]
Length = 232
Score = 116 bits (288), Expect = 2e-25
Identities = 73/225 (32%), Positives = 126/225 (55%), Gaps = 5/225 (2%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL+++D +I YL + G+ V A DG+ L L D I+ D+ +P MDG ++
Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRL-NALSRRGK 121
+++ + +Q P L +TA+ S +K+ G GADD++ KPF+ +E+ +R+ N L R +
Sbjct: 65 ISEVQYLSPEQ-PFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHR 123
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
G +T ++ G+L+ N + EV+ ++L L ++L L V ++ DL ++W
Sbjct: 124 GGETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIWK 183
Query: 182 EE-LPDSDSLRVHIHGLRAVVDK--PFDVPLIQTRHGIGYRIATP 223
E+ + D+++L VHIH LR + K P I+T G+GY+I P
Sbjct: 184 EDYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228
>gi|1151107 (U39559) cell cycle transcriptional regulator
[Caulobacter crescentus]
Length = 231
Score = 115 bits (286), Expect = 3e-25
Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 3/226 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L+IED+S A + L+ G V G G+ L ++++D I+LDLNLP M GI
Sbjct: 1 MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGI 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+V R LR A+ TP+++L+ +D K+ F GADDY+ KPF E+ R++A+ RR
Sbjct: 61 DVLRTLR-VAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRS 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
KG V++TGD+ NLD V G + L ++L+ L +T++ ++
Sbjct: 120 KGHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179
Query: 181 -GEELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
G + P+ + V I LR + I+T G GY + P+
Sbjct: 180 GGMDEPELKIIDVFICKLRKKLAASAHGKHHIETVWGRGYVLRDPN 225
>gi|130127|sp|P14146|PHOP_SALTY VIRULENCE TRANSCRIPTIONAL REGULATORY
PROTEIN PHOP >gi|73045|pir||RGEBFT regulatory protein
phoP - Salmonella typhimurium >gi|154264 (M25241) PhoP
protein [Salmonella typhimurium] >gi|154266 (M24424)
phoP protein [Salmonella typhimurium]
Length = 224
Score = 115 bits (285), Expect = 4e-25
Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 2/219 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV+EDN+ + +L L++ GH VD A D + H D ++DL LP DG+
Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGL 61
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ R+ R+ + PVL+LTAR+ +K+ SGADDY+ KPF ++EV R+ AL RR
Sbjct: 62 SLIRRWRS-SDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRN 120
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
GL ++V+ + +L E+ ++++L I++ L+ VV++ L +++
Sbjct: 121 SGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 180
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
+ EL +S ++ V + LR + + +I T G GY
Sbjct: 181 PDAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219
>gi|4530445|gb|AAD22036.1| (AF118229) response regulator PnpR
[Streptococcus pneumoniae]
Length = 250
Score = 115 bits (285), Expect = 4e-25
Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 13/223 (5%)
Query: 9 NSDIAANLGDY-LEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLR 67
NS NL DY L + G + +G L LA FD I+LD+ LP +DG+EVC++LR
Sbjct: 25 NSCXILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCKRLR 84
Query: 68 NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKGLQ--- 124
+ K TP++M++A+ +K+ + GADDYL KPF+ +E+ R+ A+ RR KG Q
Sbjct: 85 AKGVK-TPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGD 143
Query: 125 --TRVLET----GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
+ + G L+ + EV + KLL L P ++L LM+ +TR+ L R
Sbjct: 144 DSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLLER 203
Query: 179 VWGEELPDSDSL-RVHIHGLR-AVVDKPFDVPLIQTRHGIGYR 219
+WG + L VHI LR + D P I+T G GY+
Sbjct: 204 IWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYK 246
>gi|130126|sp|P23836|PHOP_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
PHOP >gi|281913|pir||A41965 alkaline phosphatase
regulatory protein phoP - Escherichia coli >gi|147254
(M81433) phoP [Escherichia coli]
>gi|216608|dbj|BAA14390| (D90393) PhoP protein
[Escherichia coli] >gi|1651558|dbj|BAA35952| (D90748)
Transcriptional regulatory protein PhoP. [Escherichia
coli] >gi|1651564|dbj|BAA35961| (D90749) Transcriptional
regulatory protein PhoP. [Escherichia coli] >gi|1787375
(AE000213) transcriptional regulatory protein
[Escherichia coli]
Length = 223
Score = 115 bits (284), Expect = 5e-25
Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 2/219 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV+EDN+ + +L +++ GH VD A D + H D ++DL LP DG+
Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ R+ R+ P+L+LTAR+S +K+ +GADDY+ KPF ++EV R+ AL RR
Sbjct: 61 SLIRRWRSND-VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
GL ++V+ + +L E+ ++++L I++ L+ VV++ L +++
Sbjct: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
+ EL +S ++ V + LR + + +I T G GY
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218
>gi|4104608 (AF036968) putative response regulator [Lactobacillus
sakei]
Length = 246
Score = 115 bits (284), Expect = 5e-25
Identities = 76/239 (31%), Positives = 125/239 (51%), Gaps = 22/239 (9%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH--EFDAIVLDLNLPGMD 58
M+IL++EDN ++ +G + ++ FA DG + V +D I LDLNLPGMD
Sbjct: 1 MKILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMD 60
Query: 59 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 118
G++V +K+R ++ K P++MLTARDS +++ G + GADDY+ KPF+ + R+ AL R
Sbjct: 61 GMQVAQKIREQS-KVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHR 119
Query: 119 RGK-------GLQTRVLETGDLEYNLDTLEVRRRGK----------LLQLNPTGLKILQA 161
R + +V E + +Y++ T + K +L L P +L+
Sbjct: 120 RAELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKT 179
Query: 162 LMEATPAVVTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 219
L + V +R+ L VW + D ++ HI LR +++ +IQT G+GY+
Sbjct: 180 LAKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEE-VGPQVIQTVWGVGYK 237
>gi|1001828|dbj|BAA10709| (D64005) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 232
Score = 114 bits (283), Expect = 6e-25
Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 15/228 (6%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH------EFDAIVLDLNL 54
MR+L++ED D+ L L + VD+ DG +LA + + + D +
Sbjct: 1 MRLLLVEDEPDLGMALEKALRRENYVVDWVQDG----NLAWSYLDQGWVNYTLAIFDWMV 56
Query: 55 PGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLN 114
PG+ G+E+C+KLR + R P+LMLTA+D + +++ G D+GADDYLIKPF + E+ RL
Sbjct: 57 PGLSGLELCQKLRGQ-RSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLR 115
Query: 115 ALSRRGKGLQTRVLETGD--LEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 172
+L RR LQ + L+ G L+Y + + + + L ++L+ M+ +++
Sbjct: 116 SLQRRSPELQPQQLQVGQWWLDYGTFAVVTPEQAR-ITLTAKEFQLLEYFMKHPQQILSS 174
Query: 173 QDLETRVWGEELPD-SDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 219
+ ++ ++W S+ + + LR +++ LI+T +G+GYR
Sbjct: 175 EQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYR 222
>gi|4433393|gb|AAD20723| (AF051157) response regulator homolog OmpR
[Vibrio cholerae]
Length = 240
Score = 114 bits (283), Expect = 6e-25
Identities = 78/232 (33%), Positives = 121/232 (51%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
++LV++D++ + A L YL E+G V A+G L F +VLDL LPG DG+
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
+CR+LRN + P+LMLTA+ +++ G + GADDYL KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRN-SNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ ++E G+ NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 VEAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184
Query: 175 LETRVWGEELPDSD-SLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 224
L G E + S+ V I LR +++ P IQT G+GY + PD
Sbjct: 185 LMNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGY-VFVPD 235
>gi|1652041|dbj|BAA16966| (D90902) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 245
Score = 114 bits (282), Expect = 8e-25
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL++ED+ +IA + + LE DG TGL + D IVLDL LP +DG+EV
Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
Query: 63 CRKLRNEARKQTP-VLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
C ++R + + P +LMLTA+ +++ G +GADDYL+KPF+ +E+ R+ AL RR
Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133
Query: 120 --GKGLQTRVLETGDLEYNLDTLEVRR----RGKLLQLNPTGLKILQALMEATPAVVTRQ 173
G+ + ++ T + +LD + R R + L+L +L M V R
Sbjct: 134 RQGQPV-GQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRT 192
Query: 174 DLETRVWGEE-LPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 224
L ++WG + D + HI LR ++ P + I+T G+GY+ PD
Sbjct: 193 QLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245
>gi|4104695 (AF039082) putative response regulator; RrF [Lactococcus
lactis]
Length = 222
Score = 114 bits (282), Expect = 8e-25
Identities = 75/223 (33%), Positives = 125/223 (55%), Gaps = 10/223 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
++IL++ED+ ++ ++ D+L+ V DGV GL+ A + +D I+LDL LP +G
Sbjct: 2 IKILLVEDDLSLSKSVYDFLKSFAQ-VKQVYDGVEGLYEAELGIYDLILLDLMLPEKNGF 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 119
EV ++LR E TPVL++TA++SLD+K+ GFD GADDYL KPF L E++ R+ AL +R
Sbjct: 61 EVLKELR-EQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRT 119
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
GK + L G++ NL + + L ++ LM+ ++ ++ + R+
Sbjct: 120 GKLEDSNGLSYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRI 179
Query: 180 WGEELPDSDS----LRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
WG DSD+ + V++ +R + V + T +GY
Sbjct: 180 WGY---DSDTTVTVVEVYMSKIRKKLKDTEFVNNLSTLRNVGY 219
>gi|586808|sp|P37478|YYCF_BACSU HYPOTHETICAL 27.2 KD SENSORY
TRANSDUCTION PROTEIN IN ROCR-PURA INTERGENIC REGION
>gi|2126981|pir||S65967 hypothetical protein - Bacillus
subtilis >gi|467327|dbj|BAA05173| (D26185) unknown
[Bacillus subtilis] >gi|1064814|dbj|BAA11300| (D78193)
homologous to sp:PHOP_BACSUB [Bacillus subtilis]
>gi|2636588|emb|CAB16078| (Z99124) similar to
two-component response regulator [YycG] [Bacillus
subtilis]
Length = 235
Score = 113 bits (281), Expect = 1e-24
Identities = 76/232 (32%), Positives = 121/232 (51%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D IA L L + G+ V A DG + + + D I+LD+ LP DG+E
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
VCR++R + P++MLTA+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 64 VCREVRK--KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQL 121
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ + + G L D V +R + ++L ++L L + V+TR+
Sbjct: 122 TTAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREH 181
Query: 175 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
L VWG + D ++ V + LR + D P I TR G+GY + P+
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPE 233
>gi|5830523|emb|CAB54568.1| (AJ006392) response regulator
[Streptococcus pneumoniae]
Length = 234
Score = 113 bits (281), Expect = 1e-24
Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 13/228 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+IL+++D I+ + + + G+ V A +G L + D I+LDL LP +DG+E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V + +R + P+LML+A+DS +K+ G + GADDY+ KPF+ +E++ R+ AL RR +
Sbjct: 63 VAKTIRKTS--SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
Query: 122 GL---------QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 172
+ + + ++ GDLE D ++ G+ L L ++L L T V+TR
Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180
Query: 173 QDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGY 218
+ L VWG + D ++ V + LR + D P I TR G+GY
Sbjct: 181 EHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGY 228
>gi|3724162|emb|CAA09795| (AJ011832) PhoP protein [Yersinia
enterocolitica]
Length = 200
Score = 113 bits (280), Expect = 1e-24
Identities = 67/199 (33%), Positives = 114/199 (56%), Gaps = 2/199 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+LV+EDN+ + +L + E GH VD A D + H D ++DL LPG DG+
Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ R+ R+ + P+L+LTAR+S +K+ ++GADDY+ KPF L+EV R+ AL RR
Sbjct: 61 SLIRRWRSH-QTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRN 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
GL ++++E + +L E+ + ++L I++ L+ VV++ L +++
Sbjct: 120 IGLASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY 179
Query: 181 GE-ELPDSDSLRVHIHGLR 198
+ EL +S ++ V + LR
Sbjct: 180 PDAELRESHTIDVLMGRLR 198
>gi|6460240|gb|AAF11967.1|AE002072_9 (AE002072) DNA-binding response
regulator [Deinococcus radiodurans]
Length = 373
Score = 113 bits (280), Expect = 1e-24
Identities = 82/225 (36%), Positives = 120/225 (52%), Gaps = 10/225 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILVIED+ DIA L L + G+ VD A + GL A D I+LDL LP DG +
Sbjct: 5 RILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGD 64
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V ++LR + P+++LTARD+++ K+ GADDYLIKPF E+ R+ R+
Sbjct: 65 VVQRLRKNS--ALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ-- 120
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
+ L GDL + V +G+ L+L+P IL L+ V +RQ++ +W
Sbjct: 121 -RTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQ 179
Query: 182 EELPD-SDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 225
LP+ S+ + VH+ LRA + L++T G +ATP A
Sbjct: 180 GRLPEGSNVVDVHMANLRAKLRDLDGYGLLRTVRG----VATPCA 220
>gi|586203|sp|Q06239|VANR_ENTFC REGULATORY PROTEIN VANR
>gi|282285|pir||A41838 transcriptional activator VanR -
Enterococcus faecium >gi|148327 (M68910) vancomycin
response regulator [Enterococcus faecium] >gi|148332
(M84146) vanR [Enterococcus faecium] >gi|155039 (M97297)
vanR [Transposon Tn1546] >gi|383762|prf||1904198A vanR
gene [Enterococcus faecalis]
Length = 231
Score = 112 bits (278), Expect = 2e-24
Identities = 75/228 (32%), Positives = 117/228 (50%), Gaps = 11/228 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+IL+++D +IA + YL+ + V L E D +LD+ LPG G+
Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+C+K+R+ + P++MLT +D+ +K+TG GADDY+ KPF E+ R+ A RR K
Sbjct: 64 ICQKIRD--KHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121
Query: 122 GL------QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
V+ L N++T E K L L PT IL+ L E VV+ + L
Sbjct: 122 KFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181
Query: 176 ETRVWGEEL--PDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 220
+WG+E ++++ VHI LR ++ D P I+T G+GY+I
Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKI 229
>gi|1351749|sp|P48259|YC27_CYAPA PROBABLE TRANSCRIPTIONAL REGULATOR
YCF27 (OMPR-LIKE PROTEIN) >gi|1016232 (U30821) ycf27
gene product [Cyanophora paradoxa]
Length = 239
Score = 112 bits (278), Expect = 2e-24
Identities = 75/228 (32%), Positives = 126/228 (54%), Gaps = 13/228 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D I L L G+ V AADG L + + + +VLD+ +P +DG
Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VC++LR E+ P++MLTA + +++TG + GADDY++KPF+ +E+E R+ +L RR +
Sbjct: 67 VCQELRKES--DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTE 124
Query: 122 G--LQT-----RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
L T L+ G L+ +++ +V + G+ ++L +L+ L+ +R
Sbjct: 125 NPTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQ 184
Query: 175 LETRVWG---EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGY 218
+ VWG E D+ + VHI LR+ +++ P + LI T GIGY
Sbjct: 185 ILQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGY 232
>gi|1731135|sp|P54443|YRKP_BACSU HYPOTHETICAL 26.8 KD SENSORY
TRANSDUCTION PROTEIN IN BLTR-SPOIIIC INTERGENIC REGION
>gi|1303715|dbj|BAA12371| (D84432) YrkP [Bacillus
subtilis] >gi|2635088|emb|CAB14584| (Z99117) similar to
two-component response regulator [YrkQ] [Bacillus
subtilis]
Length = 231
Score = 112 bits (278), Expect = 2e-24
Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 12/227 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV+ED+ DI L + L G+ V A DG L L V D ++LD+ +PG+ GIE
Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQL-VNDSLDLVILDIMMPGISGIE 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
C+ +R + P+L LTAR S +K G +G DDY+ KPF+ +E+ R+ A RR
Sbjct: 63 TCQHIRKSSN--VPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYT 120
Query: 120 ----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
K + L G L + + EV + K ++L+ +IL+ LM + + Q++
Sbjct: 121 IYQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNI 180
Query: 176 ETRVWGEE--LPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYR 219
VWG+ ++++ VHI LR+ + D P I+T G GYR
Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYR 227
>gi|6136611|sp|O78428|YC27_GUITH PROBABLE TRANSCRIPTIONAL REGULATOR
YCF27 (OMPR-LIKE PROTEIN) >gi|3602952|gb|AAC35613|
(AF041468) ompR homolog [Guillardia theta]
Length = 254
Score = 112 bits (278), Expect = 2e-24
Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 13/228 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
++L+++D + I L L G+ V A+DG L+L D ++LD+ +P +DG
Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VC+++R ++ P++MLTA + +++TG + GADDY++KPF+ +E+E R+ A+ RR
Sbjct: 76 VCQEIRKDS--DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTN 133
Query: 122 --GLQTRVLETGDLEYNLDTLEVRRR-----GKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ + +G + +N T+++ +R + ++L +L+ L+ + +R D
Sbjct: 134 KAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRAD 193
Query: 175 LETRVWG---EELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGY 218
+ VWG E D+ + VHI LRA ++ P + LI T G GY
Sbjct: 194 ILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGY 241
>gi|1175624|sp|P42244|YCBL_BACSU HYPOTHETICAL 25.8 KD SENSORY
TRANSDUCTION PROTEIN (ORF11) >gi|710006|dbj|BAA06476|
(D30808) homologue of vancomycin resistance gene product
(VanR) of Enterococcus faecium [Bacillus subtilis]
>gi|2632541|emb|CAB12049| (Z99105) similar to
two-component response regulator [YcbM] [Bacillus
subtilis]
Length = 226
Score = 111 bits (276), Expect = 4e-24
Identities = 68/225 (30%), Positives = 117/225 (51%), Gaps = 10/225 (4%)
Query: 4 LVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVC 63
+++ED+ I+ + YL + G + A DG G+ L +D ++LD+ LP ++G++
Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60
Query: 64 RKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG--- 120
+ +R ++ PVLM++A+D +K G GADDY+ KPF++ E+ R+ A RR
Sbjct: 61 KIIREKSN--IPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQY 118
Query: 121 ---KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ +V+ L ++D + V + G+ LQL T ++L V T+ +
Sbjct: 119 SAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYR 178
Query: 178 RVWGEE-LPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRI 220
VW EE D + + VH+ LR + D P I+T GIGY++
Sbjct: 179 SVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223
>gi|129159|sp|P28835|YC27_PORAE PROBABLE TRANSCRIPTIONAL REGULATOR
YCF27 (OMPR-LIKE PROTEIN) >gi|81162|pir||S20860
regulatory protein ompR - red alga (Porphyridium
aerugineum) chloroplast >gi|14153|emb|CAA44464| (X62579)
regulatory protein [Porphyridium aerugineum]
Length = 240
Score = 111 bits (275), Expect = 5e-24
Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILVI+D + I L L G+ V AADG L + + +VLDL +P +DG
Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
VC++LR E+ P++MLTA + +++TG + GADDY++KPF+ +E+E R+ ++ RR
Sbjct: 65 VCQELRKES--DVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVD 122
Query: 122 GLQTR-------VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ ++ G L+ +++ +V + + ++L +L+ L+ +R
Sbjct: 123 KASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRAT 182
Query: 175 LETRVWG---EELPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGY 218
+ VWG E D+ + VHI LRA + D P + LI T G GY
Sbjct: 183 ILQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 230
>gi|3282774|gb|AAC25063.1| (AF043352) response regulator homolog
PhoB [Vibrio cholerae]
Length = 229
Score = 110 bits (272), Expect = 1e-23
Identities = 76/224 (33%), Positives = 115/224 (50%), Gaps = 3/224 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV+ED + I L LE++G+ A D + + D ++LD LPG GI
Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63
Query: 62 VCRKL-RNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ + + R E + PV+MLTAR ++K+ G + GADDY+ KPF+ +E+ RL A+ RR
Sbjct: 64 LIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123
Query: 121 KGLQTR-VLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
V++ L+ + + V + L + PT K+L M V +R+ L V
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183
Query: 180 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
WG + D ++ VHI LR ++ LIQT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRPLRNALEDAGHDKLIQTVRGAGYRFST 227
>gi|1001717|dbj|BAA10554| (D64004) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 262
Score = 109 bits (271), Expect = 2e-23
Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 19/233 (8%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEF---------DAIVLDL 52
RILV+ED I + L+E G+ V DG L A++ EF D I+LD+
Sbjct: 32 RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDAL--ALLQEFSEDPGQAAVDLIILDI 89
Query: 53 NLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVR 112
LP ++G++VCR LR TP+L+++A+ S K+TG + GADDY+ KPF+L+E+ R
Sbjct: 90 MLPQVNGLDVCRSLRFGG-DNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVAR 148
Query: 113 LNALSRRGKGLQTRVL----ETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPA 168
A+ RR +GL + + DL V RG+ + L P ++L+ M
Sbjct: 149 CRAMIRR-QGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRR 207
Query: 169 VVTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYR 219
V +R+ L +WG + + DS ++ VHI LR +++ P + T G GYR
Sbjct: 208 VWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYR 260
>gi|2984736|gb|AAC08021.1| (AF053960) response regulator protein
[Campylobacter jejuni] >gi|6968694|emb|CAB73515.1|
(AL139077) two-component regulator [Campylobacter
jejuni]
Length = 223
Score = 109 bits (271), Expect = 2e-23
Identities = 72/223 (32%), Positives = 123/223 (54%), Gaps = 6/223 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ +L+IED+ D A L +YL + + + + L++ + +D ++LDL LPG+DG+
Sbjct: 2 INVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGI-QGYDCLILDLTLPGIDGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EVCR++R ++ P+++ +AR L +K+ G GADDYL KP+ +E+ R+ +L RR
Sbjct: 61 EVCREIRQKSN--IPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118
Query: 121 KGLQTRVLETGDLEYNLDTL--EVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
K ++ E + + +D E+ K+L L P +IL+ L++ V+R+ L +R
Sbjct: 119 KRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILEYLIQQHGYSVSREQLVSR 178
Query: 179 VWGEELPDSDSLRVHIHGLRAVVDKPFDVPL-IQTRHGIGYRI 220
+ DS SL V I LR + P I + GIGY++
Sbjct: 179 CKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIGYKL 221
>gi|2500744|sp|Q47744|VANR_ENTFA REGULATORY PROTEIN VANRB
>gi|1209526 (U35369) response regulator [Enterococcus
faecalis]
Length = 220
Score = 109 bits (270), Expect = 2e-23
Identities = 70/221 (31%), Positives = 116/221 (51%), Gaps = 8/221 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+RIL++ED+ I + +L E + VD DG + + ++LD+ LPGM+G
Sbjct: 3 IRILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGH 62
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+ R+ R A+ TP+LM+TA +N++ FD+ ADDY+ KPF ++ + R+ AL RR
Sbjct: 63 ELLREFR--AQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR- 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
G + G L + V G L L +IL L++ +T + + +R+W
Sbjct: 120 SGALAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIW 179
Query: 181 GEELP-DSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
G + D ++ HI LRA + + +I+T G+GYR+
Sbjct: 180 GYDFDGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRL 216
>gi|3913255|sp|Q54954|CIAR_STRPN TRANSCRIPTIONAL REGULATORY PROTEIN
CIAR >gi|1363429|pir||S49544 response regulator -
Streptococcus pneumoniae >gi|495276|emb|CAA54465|
(X77249) response regulator [Streptococcus pneumoniae]
Length = 224
Score = 109 bits (269), Expect = 3e-23
Identities = 70/222 (31%), Positives = 123/222 (54%), Gaps = 9/222 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
++IL++ED+ ++ ++ D+L++ + DG GL+ A +D I+LDL LP +G
Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQ-VFDGEEGLYEAESGVYDLILLDLMLPEKNGF 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+V ++LR E TPVL++TA++SLD+K GF+ GADDYL KPF L+E+++R+ AL +R
Sbjct: 61 QVLKELR-EKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
L G++ NL T V+ ++L +L ++ ++ + + R+W
Sbjct: 120 GKFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLW 179
Query: 181 GEELPDSDS----LRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
G DSD+ + V++ +R + +QT +GY
Sbjct: 180 GF---DSDTTISVVEVYVSKVRKKLKGTTFAENLQTLRSVGY 218
>gi|1870001|emb|CAB06852| (Z92539) kdpE [Mycobacterium tuberculosis]
Length = 226
Score = 109 bits (269), Expect = 3e-23
Identities = 78/222 (35%), Positives = 110/222 (49%), Gaps = 7/222 (3%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+LVI+D I L L RG+ V A+ G L A H D ++LDL LP M GI+V
Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGLPDMSGIDV 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
LR PV++L+AR +K+ D+GADDY+ KPF + E RL A RR
Sbjct: 64 LGGLRGWL--TAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121
Query: 123 ---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
L+ V+ET +L +V + G + L PT +L+ L +V R +L V
Sbjct: 122 AAELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEV 181
Query: 180 WGEE-LPDSDSLRVHIHGL-RAVVDKPFDVPLIQTRHGIGYR 219
WG ++ LRV++ L R + D P + T G+GYR
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYR 223
>gi|5830517|emb|CAB54564.1| (AJ005926) response regulator
[Streptococcus pneumoniae]
Length = 246
Score = 109 bits (269), Expect = 3e-23
Identities = 70/222 (31%), Positives = 123/222 (54%), Gaps = 9/222 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
++IL++ED+ ++ ++ D+L++ + DG GL+ A +D I+LDL LP +G
Sbjct: 24 IKILLVEDDLGLSNSVFDFLDDFADVMQ-VFDGEEGLYEAESGVYDLILLDLMLPEKNGF 82
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+V ++LR E TPVL++TA++SLD+K GF+ GADDYL KPF L+E+++R+ AL +R
Sbjct: 83 QVLKELR-EKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 141
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
L G++ NL T V+ ++L +L ++ ++ + + R+W
Sbjct: 142 GKFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLW 201
Query: 181 GEELPDSDS----LRVHIHGLRAVVDKPFDVPLIQTRHGIGY 218
G DSD+ + V++ +R + +QT +GY
Sbjct: 202 GF---DSDTTISVVEVYVSKVRKKLKGTTFAENLQTLRSVGY 240
>gi|2982999 (AE000683) transcriptional regulator (PhoB-like)
[Aquifex aeolicus]
Length = 228
Score = 108 bits (268), Expect = 4e-23
Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 5/221 (2%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RI +IED+ D+A + LE G V+ + D I++D+ LP +DG
Sbjct: 7 RIALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGFR 66
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ L++ A K+ PV+ +TA+ ++KL GF+ GADDY+ KPF+++E+ R+ A+ +R
Sbjct: 67 IANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRY 126
Query: 121 KGL-QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
K + +++VL+ +E + + ++ G+ + L P KIL+ LME V+R L ++
Sbjct: 127 KKVSESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKL 186
Query: 180 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 219
W E ++ ++ VH+ +R + K LI+T G+GY+
Sbjct: 187 WDYERETTERAIDVHVKHIRDKLGK--YKGLIKTVRGVGYK 225
>gi|4104602 (AF036966) putative response regulator [Lactobacillus
sakei]
Length = 237
Score = 108 bits (267), Expect = 5e-23
Identities = 76/234 (32%), Positives = 122/234 (51%), Gaps = 13/234 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D I+ + L + G+ V A DG L D I+LDL LP +DG+E
Sbjct: 4 KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVDGLE 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA-LSRRG 120
V R++R P++M+TA+DS +K+ G + GADDY+ KPF+ +E+ R+ A L R+G
Sbjct: 64 VARQVRKS--HDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQG 121
Query: 121 KGLQT--------RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTR 172
Q+ + GDL + + V +RG ++L ++L L + V+TR
Sbjct: 122 STSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTR 181
Query: 173 QDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
+ L VWG + D ++ V + LR + D P + TR G+GY + P+
Sbjct: 182 EHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPE 235
>gi|6460051|gb|AAF11793.1|AE002057_1 (AE002057) phosphate regulon
transcriptional regulatory protein PhoB [Deinococcus
radiodurans]
Length = 238
Score = 108 bits (266), Expect = 6e-23
Identities = 77/221 (34%), Positives = 111/221 (49%), Gaps = 3/221 (1%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
++VIED S + L +LE G V A + DA+VLD LPG GI
Sbjct: 4 VVVIEDESTVRDVLRFHLERAGLRVSAYASTQAAEEAGALAGADALVLDWMLPGESGIGF 63
Query: 63 CRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
R+LR + ++ PVLMLTAR + ++ G ++GADDYL KPF+ E+ R+ AL RR +
Sbjct: 64 LRRLRTDNDLRRLPVLMLTARAAEAERVEGLETGADDYLTKPFSAAELVARVRALLRRAQ 123
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
+ L G L +L E + G+ L L +L L V +R +L RVWG
Sbjct: 124 PETPQHLGNGPLTVDLAAAEAQLAGRTLNLTRREFDLLAFLTANAGRVYSRTELLDRVWG 183
Query: 182 EE-LPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRI 220
+ L ++ H+ LRA + D P ++T G GYR+
Sbjct: 184 ADFLGGERTVDQHVTQLRAHLGDDPGKPSFLETVRGKGYRM 224
>gi|130120|sp|P23620|PHOB_PSEAE PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|94799|pir||A37775 phoB
protein - Pseudomonas aeruginosa
Length = 229
Score = 107 bits (265), Expect = 8e-23
Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVV-HEFDAIVLDLNLPGMDGIE 61
IL+++D + I + +E G+ A+ H +V + I+LD LPG GIE
Sbjct: 6 ILIVDDEAPIREMIAVAVEMAGYEC-LEAENTQQAHAVIVDRKPHLILLDWMLPGTSGIE 64
Query: 62 VCRKL-RNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR- 119
+ R+L R+E P++MLTA+ DNK+ G ++GADDY+ KPF+ +E+ RL A+ RR
Sbjct: 65 LARRLKRDELTLDIPIIMLTAKGEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRRT 124
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
G G +E G L + + V GK ++ PT +LQ M TR +V
Sbjct: 125 GPGHSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYGLLQFFMTHQERAYTRGQRRDQV 184
Query: 180 WGEEL-PDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
WG + + ++ + I LR + + ++ L+QT G GYR +T
Sbjct: 185 WGGNVYVEERTVDMDIRRLRKALGEVYE-NLVQTVRGTGYRFST 227
>gi|3288064|emb|CAB09801| (Z97065) RisA protein [Bordetella
bronchiseptica] >gi|3288070|emb|CAA12131| (AJ224800)
RisA protein [Bordetella avium]
>gi|3288083|emb|CAA12132| (AJ224801) RisA protein
[Bordetella parapertussis] >gi|3288101|emb|CAA12129|
(AJ224798) RisA protein [Bordetella pertussis]
Length = 244
Score = 107 bits (265), Expect = 8e-23
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 12/233 (5%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ + L YL E+G V A D L FD +VLDL LPG DG+
Sbjct: 11 KILVVDDDPRLRDLLRRYLSEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLS 70
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
+CR+LR TP++MLTA+ +++ G + GADDYL KPF +E+ R+NA+ RR
Sbjct: 71 ICRRLRG-GHDNTPIIMLTAKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRG 129
Query: 120 ------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQ 173
+ + G NL T + R G+ + + +L+ ++R
Sbjct: 130 TEEHPGAPSQENESIAFGPYVLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRD 189
Query: 174 DLETRVWGEELPDSD-SLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 224
L G E D SL V I LR +++ P IQT G+GY + PD
Sbjct: 190 KLMELARGREYEAFDRSLDVQISRLRKLIEPNPSKPVFIQTVWGLGY-VFVPD 241
>gi|6689352|emb|CAB65451.1| (AJ012051) VicR protein [Streptococcus
pyogenes]
Length = 239
Score = 107 bits (265), Expect = 8e-23
Identities = 72/236 (30%), Positives = 125/236 (52%), Gaps = 15/236 (6%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+IL+++D I+ + L + G+ + A DG + + + D I+LDL LP +DG+E
Sbjct: 6 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 65
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
V +++R + P++ML+A+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR +
Sbjct: 66 VAKEIRKTSH--VPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 123
Query: 122 GLQTRVLE-----------TGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVV 170
++T V E G+L+ D ++ G+ ++L ++L L V+
Sbjct: 124 TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 183
Query: 171 TRQDLETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
TR+ L VWG + D ++ V + LR + D P I TR G+GY + + D
Sbjct: 184 TREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD 239
>gi|6968660|emb|CAB73481.1| (AL139077) putative two-component
regulator [Campylobacter jejuni]
Length = 224
Score = 107 bits (265), Expect = 8e-23
Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL+IED+ ++A +YLE+ VD A + GL + E+ I+LDL+LPG+DG+EV
Sbjct: 4 ILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALKEYQLIILDLSLPGLDGLEV 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
C ++R + TP+++ +AR + +K+ + GADDYL KP+ +E++ R+ + RR
Sbjct: 64 CEEIRK--KYDTPIIVSSARHDITDKVNALELGADDYLPKPYNPKELQARIKSHLRRISN 121
Query: 123 LQTRVLET-GDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWG 181
++ + ++ DL Y+ + +G+ L L IL L++ VV+R++L
Sbjct: 122 TKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILSYLIKKEGGVVSREELVYNCSS 181
Query: 182 -EELPDSDSLRVHIHGLRAVV-DKPFDVPLIQTRHGIGYRI 220
E + S+ V I +R + D P I + GIGY++
Sbjct: 182 ISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGIGYKL 222
>gi|1731206|sp|P54884|YV17_MYCLE HYPOTHETICAL SENSORY TRANSDUCTION
PROTEIN B2168_C3_248 >gi|2145927|pir||S72906 phosphate
sensor phoP - Mycobacterium leprae >gi|467058 (U00018)
phoP; B2168_C3_248 [Mycobacterium leprae]
Length = 198
Score = 107 bits (265), Expect = 8e-23
Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 8/181 (4%)
Query: 46 DAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFA 105
D ++LDL LPGM G +V ++LR R PV+M+TARDS +K+ G + GADDY+ KP++
Sbjct: 18 DIVLLDLMLPGMSGTDVYKQLR--VRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYS 75
Query: 106 LQEVEVRLNALSRRG----KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQA 161
+E+ R+ A+ RRG + VLE+G L +++ V G + L +L+
Sbjct: 76 ARELIARIRAVLRRGGDDDSEISDGVLESGPLRMDVERHVVSVNGYAITLPLKEFDLLEY 135
Query: 162 LMEATPAVVTRQDLETRVWG-EELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYR 219
LM + V+TR L RVWG + + D+ +L VH+ LR+ ++ P + + T G+GY+
Sbjct: 136 LMRNSGRVLTRGQLIDRVWGVDYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYK 195
Query: 220 I 220
+
Sbjct: 196 L 196
>gi|1172482|sp|P45606|PHOB_SHIDY PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|280132|pir||A44753 phoB
protein - Shigella dysenteriae >gi|152773 (M31793)
phosphate regulatory protein phoB [Shigella dysenteriae]
Length = 229
Score = 107 bits (264), Expect = 1e-22
Identities = 73/224 (32%), Positives = 117/224 (51%), Gaps = 3/224 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV+ED + I + LE+ G A D + ++ D I+LD LPG GI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ L+ E+ + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 121 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ V+E L + + V + L++ PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183
Query: 180 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
WG + D ++ VHI LR ++ ++QT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227
>gi|130119|sp|P08402|PHOB_ECOLI PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|73044|pir||RGECFB phosphate
regulon regulatory protein phoB - Escherichia coli
>gi|42388|emb|CAA27659| (X04026) phoB protein (aa 1-229)
[Escherichia coli] >gi|1657595|gb|AAB18123.1| (U73857)
phosphate regulon transcriptional regulatory protein
phoB [Escherichia coli] >gi|1786599 (AE000146) positive
response regulator for pho regulon, sensor is PhoR (or
CreC) [Escherichia coli]
Length = 229
Score = 107 bits (264), Expect = 1e-22
Identities = 73/224 (32%), Positives = 117/224 (51%), Gaps = 3/224 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV+ED + I + LE+ G A D + ++ D I+LD LPG GI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ L+ E+ + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 121 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ V+E L + + V + L++ PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183
Query: 180 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
WG + D ++ VHI LR ++ ++QT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227
>gi|541208|pir||S41887 ompR protein - Salmonella typhi
Length = 239
Score = 107 bits (264), Expect = 1e-22
Identities = 75/232 (32%), Positives = 121/232 (51%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ V+ G + NL T E+ R + + L +L+AL+ ++R +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDN 184
Query: 175 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 224
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|3236110|emb|CAA04532| (AJ001103) arcA [Lactococcus lactis]
Length = 233
Score = 106 bits (263), Expect = 1e-22
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 11/231 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D I+ + L + G V A DG L + D I+LDL LP +DG++
Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
V R++R + TP++M++A+DS +K+ G + GADDY+ KPF+ +E+ R+ A RR
Sbjct: 63 VAREIRKTS--DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRIN 120
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ L G+L N + GK L L ++L L + V+TR++
Sbjct: 121 VAPAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITREN 180
Query: 175 LETRVWG-EELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATP 223
L VWG + D ++ V + LR V D P + TR G+GY ++ P
Sbjct: 181 LLETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYMSNP 231
>gi|129158|sp|P03025|OMPR_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
OMPR >gi|453287 (J01656) OmpR protein [Escherichia coli]
>gi|602089|emb|CAA54510| (X77305) ompR [Salmonella
typhi] >gi|606339|gb|AAA58202.1| (U18997) CG Site No.
434; alternate name ompB [Escherichia coli] >gi|1789809
(AE000416) response regulator (sensor, EnvZ) affecting
transcription of ompC and ompF: outer membrane protein
synthesis [Escherichia coli]
Length = 239
Score = 106 bits (262), Expect = 2e-22
Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ V+ G + NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184
Query: 175 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 224
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|2108342|emb|CAA70146| (Y08950) OmpR protein [Yersinia
enterocolitica]
Length = 239
Score = 106 bits (262), Expect = 2e-22
Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ V+ G + NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 NELPGAPSQEETVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184
Query: 175 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 224
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|4104605 (AF036967) putative response regulator [Lactobacillus
sakei]
Length = 228
Score = 106 bits (262), Expect = 2e-22
Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGL-HLAVVHEFDAIVLDLNLPGMDG 59
M+IL+++D+ +I L Y++ G+ A G L +A D ++LD+ +P M G
Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMSG 60
Query: 60 IEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 119
IEV + +R ++ Q P+L+++A+ + +K+ G +GADDY+ KPF EV R+ +L RR
Sbjct: 61 IEVIKAVRKDS--QVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRR 118
Query: 120 GKGLQTR----VLETGDLEYNLDTLEVRR-RGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ T +LE G L D+ EV GK +QL IL L V + D
Sbjct: 119 SQQQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADD 178
Query: 175 LETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFD-VPLIQTRHGIGYRI 220
+ RVW +E + + ++ VH+ LR +++ D +I+T G+GY++
Sbjct: 179 IFERVWKQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKV 226
>gi|4583523|gb|AAD25108.1|AF140356_1 (AF140356) VncR [Streptococcus
pneumoniae] >gi|5830544|emb|CAB54582.1| (AJ006399)
response regulator [Streptococcus pneumoniae]
Length = 218
Score = 106 bits (261), Expect = 2e-22
Identities = 70/222 (31%), Positives = 118/222 (52%), Gaps = 9/222 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M+IL++ED I + DYL + G+ AADG L +E ++LD+ +P ++G+
Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EV ++R + Q PVLMLTA + K++ F S AD YL KPF+L ++VR++A+ +R
Sbjct: 61 EVLAEIRKTS--QVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY 118
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
R+ D + + ++ G+ + +N L+IL L++ +TR + VW
Sbjct: 119 YD-TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVW 177
Query: 181 --GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
+E+P + V+I LR K D+ I T +GY++
Sbjct: 178 KATDEVPFDRVIDVYIKELR----KKLDLDCILTVRNVGYKL 215
>gi|1172483|sp|P45607|PHOB_SHIFL PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|2120000|pir||S61298
transcriptional activator phoB - Shigella flexneri
>gi|531494|emb|CAA56927| (X81000) phoB [Shigella
flexneri]
Length = 229
Score = 105 bits (260), Expect = 3e-22
Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 3/224 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV+ED + I + LE+ G A D + ++ D I+LD LPG GI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ L+ E+ + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 121 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ V++ L + + V + L++ PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPELVYSREQLLNHV 183
Query: 180 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
WG + D ++ VHI LR ++ ++QT G GYR +T
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227
>gi|1747435 (U39673) KdpE [Clostridium acetobutylicum]
Length = 232
Score = 105 bits (260), Expect = 3e-22
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 9/225 (4%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
ILV+ED+ I + L +G+ G + L++ + D IVLDL LP +DGIEV
Sbjct: 7 ILVVEDDKPIRNFITTALSTQGYKYSETDKGNEAIALSMANSPDLIVLDLGLPDIDGIEV 66
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR---- 118
K+R ++ P+++++AR++ K+ D GADDY+ KPF + E+ R+ R
Sbjct: 67 IGKIREWSK--VPIIIVSARENERQKVEALDKGADDYITKPFGIGELLARIRVSLRHVNA 124
Query: 119 -RGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ K + +L + + V GK + L P KI+ L + + V+T +
Sbjct: 125 GKAKDKSIDFFKVKNLSVDFEKRRVSVNGKEVHLTPIEYKIMFLLCKYSGRVLTHNFIIN 184
Query: 178 RVWGEEL-PDSDSLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRI 220
+WG + ++ SLRV + LR ++K P I T G+GYR+
Sbjct: 185 EIWGASVGNENQSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRL 229
>gi|1172481|sp|P45605|PHOB_KLEPN PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|280103|pir||C44753 phoB
protein - Klebsiella pneumoniae >gi|149295 (M31794)
phosphate regulatory protein phoB [Klebsiella
pneumoniae]
Length = 229
Score = 105 bits (259), Expect = 4e-22
Identities = 72/223 (32%), Positives = 114/223 (50%), Gaps = 3/223 (1%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RILV+ED + I + LE+ G A D + ++ D I+LD LPG G++
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63
Query: 62 VCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ L+ EA + PV+MLTAR ++++ G ++GADDY+ KPF+ +E+ R+ A+ RR
Sbjct: 64 FIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
Query: 121 KGLQT-RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ V+E L + + V L + PT K+L M V +R+ L V
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183
Query: 180 WGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 221
WG + D ++ VHI LR ++ ++QT G GYR +
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRFS 226
>gi|129160|sp|P08981|OMPR_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN
OMPR >gi|79118|pir||S01366 regulatory protein ompR -
Salmonella typhimurium >gi|47664|emb|CAA30934| (X12374)
ompR regulatory protein (AA 1 - 239) [Salmonella
typhimurium] >gi|587570|emb|CAA55076| (X78270) ompR
[Salmonella typhi]
Length = 239
Score = 104 bits (257), Expect = 7e-22
Identities = 74/232 (31%), Positives = 119/232 (50%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR-- 119
+CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ + RR
Sbjct: 66 ICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQA 124
Query: 120 -----GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
+ V+ G + NL T E+ R + + L +L+AL+ ++R
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184
Query: 175 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 224
L G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|2313252|gb|AAD07234.1| (AE000537) response regulator (ompR)
[Helicobacter pylori 26695]
Length = 225
Score = 104 bits (257), Expect = 7e-22
Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ +L+IED+ ++A L ++L + G V + TG+ A +D ++LDL LP +DG+
Sbjct: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGL 61
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EVCR++ + K P+++ +AR +++K+ D GADDYL KP+ +E+ R+ +L RR
Sbjct: 62 EVCRRISKQ--KHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRS 119
Query: 121 KGLQTRVLETGD---LEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ V E GD + D+ EV K L L +IL L+ V +R+ +
Sbjct: 120 H-KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI-- 176
Query: 178 RVWGEEL-PDSD--SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRI 220
+ E + P+S S+ V I LR+ ++K P I + GIGY++
Sbjct: 177 AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKL 223
>gi|1070667|pir||RGECOR osmosensor response regulator ompR -
Escherichia coli
Length = 239
Score = 104 bits (256), Expect = 9e-22
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 4 LVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVC 63
LV++D+ + A L YL E+G V A+ L F +VLDL LPG DG+ +C
Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67
Query: 64 RKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR---- 119
R+LR+++ P++M+TA+ +++ G + GADDY+ KPF +E+ R+ A+ RR
Sbjct: 68 RRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126
Query: 120 ---GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 176
+ V+ G + NL T E+ R + + L +L+AL+ ++R L
Sbjct: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186
Query: 177 TRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 224
G E + S+ V I LR +V++ P IQT G+GY + PD
Sbjct: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY-VFVPD 235
>gi|1001817|dbj|BAA10698| (D64005) regulatory components of sensory
transduction system [Synechocystis sp.]
Length = 234
Score = 104 bits (256), Expect = 9e-22
Identities = 72/230 (31%), Positives = 115/230 (49%), Gaps = 12/230 (5%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH--EFDAIVLDLNLPGMD 58
MRIL++ED +D+ + L + VD+ DG E+ ++D LPG+
Sbjct: 1 MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
Query: 59 GIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 118
G+E+C+KLR + PVLMLTA +N++ G D+GADDYL KPF + E+ RL AL R
Sbjct: 61 GLELCQKLRTQGNS-LPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQR 119
Query: 119 RGKGLQTRVLETG----DLEYNLDTLEVRRRGKL----LQLNPTGLKILQALMEATPAVV 170
R Q ++L G D NL ++ + L + L +I Q LM+ ++
Sbjct: 120 RSPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERII 179
Query: 171 TRQDLETRVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR 219
+ + ++W +E P S+ + + +R + + I+T G GYR
Sbjct: 180 SGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYR 229
>gi|5353563|gb|AAD42180.1|AF130997_1 (AF130997) response regulator
[Enterococcus faecium]
Length = 232
Score = 104 bits (256), Expect = 9e-22
Identities = 78/230 (33%), Positives = 119/230 (50%), Gaps = 14/230 (6%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D ++A + YL+ G+ V +G L E D +LD+ LP +DG +
Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+C+K+R + PV+MLTA+ +K+ G S ADDY+ KPF EV R+ A R+
Sbjct: 64 ICQKIRE--KFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLEVVARVKAQLRQYM 120
Query: 122 GLQTRVL--ETGDLEYNLDTLEVRRR-------GKLLQLNPTGLKILQALMEATPAVVTR 172
+ L E EY++ + + + GK +QL PT IL L E VV+
Sbjct: 121 RYKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVST 180
Query: 173 QDLETRVWGEELPDS-DSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 220
++L VWGE DS +++ HI LR + +P P I+T G+GY I
Sbjct: 181 EELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230
>gi|4154653 (AE001453) putative TRANSCRIPTIONAL REGULATOR
[Helicobacter pylori J99]
Length = 225
Score = 103 bits (255), Expect = 1e-21
Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ +L+IED+ ++A L ++L + G V + TG+ A +D ++LDL LP +DG+
Sbjct: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVINYDEPYTGISAANTQNYDLLLLDLTLPNLDGL 61
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EVCR++ + K P+++ +AR +++K+ D GADDYL KP+ +E+ R+ +L RR
Sbjct: 62 EVCRRISKQ--KHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRS 119
Query: 121 KGLQTRVLETGD---LEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ V E GD + D+ EV K L L +IL L+ V +R+ +
Sbjct: 120 H-KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI-- 176
Query: 178 RVWGEEL-PDSD--SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRI 220
+ E + P+S S+ V I LR+ ++K P I + GIGY++
Sbjct: 177 AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKL 223
>gi|79509|pir||S22632 petR protein - Rhodobacter capsulatus
>gi|2654368|emb|CAA78098| (Z12113) protein of unknown
function [Rhodobacter capsulatus]
Length = 237
Score = 103 bits (254), Expect = 2e-21
Identities = 73/232 (31%), Positives = 117/232 (49%), Gaps = 13/232 (5%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+L+++D+ I L +L G V D L EF+ IVLD+ +PG DG+ +
Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLLSGLEFNLIVLDVMMPGEDGLSL 68
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R LR + TP+L+LTAR ++ G ++GADDYL KPF +E+ +R+NA+ RR
Sbjct: 69 TRDLRT--KMATPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRRVPE 126
Query: 123 LQT---RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL---- 175
T + L G L Y+LD E+ + + ++L T +++ V+ R +L
Sbjct: 127 AVTAGPKYLSLGPLRYDLDRGELSQGDQPVRLTATEAALMRIFAAHAGEVIGRTELIEEL 186
Query: 176 --ETRVWGEELPDSDSLRVHIHGLRAVVD-KPFDVPLIQTRHGIGYRIATPD 224
+ EE ++ V I LR ++ P + +QT G+GY +A PD
Sbjct: 187 GRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRYLQTVRGLGYMLA-PD 237
>gi|5759261|gb|AAD51056.1|AF175293_1 (AF175293) response regulator
[Enterococcus faecium]
Length = 232
Score = 102 bits (252), Expect = 3e-21
Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 20/233 (8%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D ++A + YL+ G+ V +G L E D +LD+ LP +DG +
Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR--- 118
+C+K+R + PV+MLTA+ +K+ G S ADDY+ KPF E+ R+ A R
Sbjct: 64 ICQKIRE--KFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLELVARVKAQLRQYM 120
Query: 119 --RGKGLQTRVLETGDLEYNLDTLEVRRR-------GKLLQLNPTGLKILQALMEATPAV 169
+ G++ T EY++ + + + GK +QL PT IL L E V
Sbjct: 121 RYKQPGIKQEAERT---EYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTV 177
Query: 170 VTRQDLETRVWGEELPDS-DSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRI 220
V+ ++L VWGE DS +++ HI LR + +P P I+T G+GY I
Sbjct: 178 VSTEELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230
>gi|4103328 (AF022772) response regulator [Erwinia carotovora subsp.
carotovora]
Length = 227
Score = 102 bits (251), Expect = 3e-21
Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 6/226 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRILV+EDN + +L + E GH VD A+D + + D ++DL LP DG+
Sbjct: 1 MRILVVEDNVLLLHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPDEDGM 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ R+ R K P+L+LTAR+ KL + DDY+ KPF ++EV RL AL RR
Sbjct: 61 SMIRRWRANQAK-LPILVLTAREGWQTKLPCWKP-CDDYVTKPFHMEEVVARLQALMRRN 118
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
GL ++++ E +L + E+ ++L I++ L+ T VV++ L +++
Sbjct: 119 SGLASQIISLPPFEVDL-SRELVIHSTPIKLTAFEYTIIETLIRNTGKVVSKDSLMLQLY 177
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYR--IATP 223
+ EL +S ++ V + LR + + +I T G GYR I TP
Sbjct: 178 PDAELRESHTIDVLMGRLRKKIQQADAPDVITTVRGQGYRFDIDTP 223
>gi|6127220|gb|AAF04314.1| (AF150928) putative 2-component
regulatory protein [Acinetobacter sp. ADP1]
Length = 226
Score = 102 bits (251), Expect = 3e-21
Identities = 63/228 (27%), Positives = 119/228 (51%), Gaps = 8/228 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
++IL IED+ I L VD+A G+ L + ++LDL LP ++G+
Sbjct: 2 IKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEGL 61
Query: 61 EVCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 119
+V + +R + + V++++ARD +K+ G GADDY++KP+ E+ R+ ++ RR
Sbjct: 62 DVLKHIRKKIELNKIAVIIISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVLRR 121
Query: 120 GK--GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
G L G ++ +T + + G+ + L+ IL+ +M + ++Q LE
Sbjct: 122 GNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEWSILEPMMMYPNQIFSKQMLEE 181
Query: 178 RVWG-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
+++ ++ +S+++ VHIH LR + K F I+ G+GY + T +
Sbjct: 182 KLYDCDDEINSNTIEVHIHNLRQKLGKDF----IRNVRGLGYCVETQE 225
>gi|6137054|emb|CAB59609.1| (AL132662) putative response regulator
[Streptomyces coelicolor A3(2)]
Length = 238
Score = 101 bits (248), Expect = 8e-21
Identities = 70/226 (30%), Positives = 110/226 (47%), Gaps = 8/226 (3%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+LV+ED+ I A L + L G+AV A G L D +VLDL LP +DG++V
Sbjct: 13 VLVVEDDPVIRAALIEVLTGHGYAVKTAHQGFEALRDITQSPPDIVVLDLGLPDLDGLDV 72
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 120
R +R +R PVL+ TARD + ++GADDY++KPF+ ++ RL A+ RR
Sbjct: 73 LRMIRGISR--VPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSAP 130
Query: 121 ---KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+ + VL DL + G+ L L +L L V++RQ +
Sbjct: 131 AGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRILA 190
Query: 178 RVWGEELPDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIAT 222
VW + + ++ VH+ LR + + P + T GIG ++ +
Sbjct: 191 EVWQQPYVEDQTVDVHLSALRRKMGEKARKPRYLHTVRGIGIKLVS 236
>gi|485521|pir||S33662 rprY protein - Bacteroides fragilis
Length = 236
Score = 99.5 bits (244), Expect = 2e-20
Identities = 60/228 (26%), Positives = 119/228 (51%), Gaps = 6/228 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+RIL+ ED+ ++ L +YL+ +G++ + DG G + +++D V D+ +P DG
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGF 67
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ +++R A + P++ LTA+ ++ L GF GADDY+ KPF+++E+ R+ A+ RR
Sbjct: 68 TLAQEVR-AANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRRV 126
Query: 121 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+G ++ + + G ++ + K +L ++L L ++ R
Sbjct: 127 RGKKNKESNIYKIGKFTFDTQKQILAIGDKQTKLTTKESELLGLLCAHANEILQRDFALK 186
Query: 178 RVW-GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
+W + ++ S+ V+I LR + + +I HG GY++ TP+
Sbjct: 187 TIWIDDNYFNARSMDVYITKLRKHLKDDDSIEIINI-HGKGYKLITPE 233
>gi|3367760|emb|CAA20085| (AL031155) putative two-component
regulator [Streptomyces coelicolor]
Length = 204
Score = 97.9 bits (240), Expect = 7e-20
Identities = 69/193 (35%), Positives = 99/193 (50%), Gaps = 5/193 (2%)
Query: 30 AADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKL 89
A DG T L LA A VLD+ LP DG +VC+ +R +PV+ LTA L+++L
Sbjct: 16 APDGATALRLATPG-ISAAVLDVGLPDADGRDVCQAMRANGFL-SPVIFLTAHHRLNDRL 73
Query: 90 TGFDSGADDYLIKPFALQEVEVRLNALSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLL 149
+GF +G DDYL KPF L E+ RL A +R + GDL + V RG +
Sbjct: 74 SGFSAGGDDYLPKPFHLTELAARLRAALKRAAPPPSAT--AGDLALDAVRHVVSVRGTRV 131
Query: 150 QLNPTGLKILQALMEATPAVVTRQDLETRVWGEELP-DSDSLRVHIHGLRAVVDKPFDVP 208
L PT ++L ALM A+ +V R++L W E ++L ++ LR +
Sbjct: 132 DLTPTEFRLLAALMAASGNIVRRRELVRAAWPEGAQVHENTLDQYLTRLRRKLRAAGSDR 191
Query: 209 LIQTRHGIGYRIA 221
I T GIG+R++
Sbjct: 192 TIGTARGIGHRLS 204
>gi|4981814|gb|AAD36333.1|AE001781_4 (AE001781) phosphate regulon
transcriptional regulatory protein PhoB [Thermotoga
maritima]
Length = 229
Score = 97.9 bits (240), Expect = 7e-20
Identities = 63/222 (28%), Positives = 118/222 (52%), Gaps = 6/222 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+++L+ ED+ DI + L YLE G+ D A ++ ++LDL P +
Sbjct: 6 VKVLIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFPDGVAM 65
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ +++ + + +++++ARD +++ G + GADDY+ KPF +EV R+ A+ RR
Sbjct: 66 DEIPEMK-VSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRR- 123
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
G + +VL G LE + VR GK +++ ++L+ L V +R+++ RVW
Sbjct: 124 MGKEQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVW 183
Query: 181 GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
G++ + VHI +R+ + K + I+T G+GY+ +T
Sbjct: 184 GDDYVSDRVVDVHISAIRSKIGKGW----IKTVRGLGYKFST 221
>gi|299503|bbs|129436 RprY=inner membrane signal-transducing protein
[Bacteroides fragilis, Peptide, 236 aa]
Length = 236
Score = 96.7 bits (237), Expect = 2e-19
Identities = 59/228 (25%), Positives = 118/228 (50%), Gaps = 6/228 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+RIL+ ED+ ++ L +YL+ +G++ + DG G + +++D V D+ +P DG
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGF 67
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ +++R A + P++ LTA+ ++ L GF GADDY+ KPF+++E+ + A+ RR
Sbjct: 68 TLAQEVR-AANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFYIEAILRRV 126
Query: 121 KG---LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLET 177
+G ++ + + G ++ + K +L ++L L ++ R
Sbjct: 127 RGKKNKESNIYKIGKFTFDTQKQILAIGDKQTKLTTKESELLGLLCAHANEILQRDFALK 186
Query: 178 RVW-GEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPD 224
+W + ++ S+ V+I LR + + +I HG GY++ TP+
Sbjct: 187 TIWIDDNYFNARSMDVYITKLRKHLKDDDSIEIINI-HGKGYKLITPE 233
>gi|2126761|pir||I40084 gtcR protein - Bacillus brevis
>gi|468745|emb|CAA55264| (X78502) gtcR [Brevibacillus
brevis]
Length = 242
Score = 96.3 bits (236), Expect = 2e-19
Identities = 65/233 (27%), Positives = 113/233 (47%), Gaps = 13/233 (5%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL+ +D +I L +LE + + A DG + H D ++D+ +P +DG ++
Sbjct: 5 ILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALDGFQL 64
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG-- 120
++L NE + PV++L+A++ +K+ G GADD++ KPF E R+ A RR
Sbjct: 65 IKRLTNEYK--LPVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRRAFE 122
Query: 121 ------KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEAT-PAVVTRQ 173
K + T+ G L V R + + P ++L M+ + ++ T+Q
Sbjct: 123 FNEPEEKAISTQSTTVGRLTLLHTACVVYRGDETYSVTPLEYRLLNTFMQCSRTSIFTKQ 182
Query: 174 DLETRVWGEEL-PDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATPD 224
L + W E D +++ V I LR + D+P I+T G+GY+ A+ D
Sbjct: 183 QLFEQAWSETYWEDDNTIMVQISRLRDKIEDQPRQPVYIKTVRGLGYKFASKD 235
>gi|6967830|emb|CAB74192.1| (AL139075) two-component regulator
[Campylobacter jejuni]
Length = 223
Score = 95.2 bits (233), Expect = 4e-19
Identities = 59/224 (26%), Positives = 116/224 (51%), Gaps = 5/224 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MRILVIED + + D L E G+ D + + G + + +D ++ + LP DG
Sbjct: 1 MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRHYDLVLANWTLPDGDGA 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
E+ +++++ +T V++++++ + ++ +GADD++ KP + R+ A R G
Sbjct: 61 ELVNTIKHKS-PRTSVMIMSSKTDKETEIKALKAGADDFVKKPLDFDILLARIEARLRLG 119
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
T V++ DL + D ++ +G+ ++L ++L L + +V+++ L +W
Sbjct: 120 ---GTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLARHSDQIVSKEQLLDAIW 176
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
E EL + + V I+ +R +DKP ++ I+T GYR P
Sbjct: 177 EEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFCFP 220
>gi|1705849|sp|Q07783|CHVI_AGRTU PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN CHVI >gi|304125 (L19166) putative [Agrobacterium
tumefaciens]
Length = 241
Score = 94.8 bits (232), Expect = 6e-19
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 24/239 (10%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
I +++D+ +I ++ LE G+ V+ DG + + + + D+ +P MDG+E+
Sbjct: 4 IALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGMEL 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R+LR ++ PV+ LT++D ++L G GADD++ KPF+ + + R+ A+ RR
Sbjct: 64 LRRLRQKS--DIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASS 121
Query: 123 ----------------LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEAT 166
Q R LE G L + + +G+ + L T IL +L A
Sbjct: 122 REASAATGGTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSLAPAA 181
Query: 167 PAVVTRQDLETRVWGEEL-PDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIA 221
R L + E++ D ++ HI LR +VD FD +I+T +G+GYR A
Sbjct: 182 GRGEKRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKLVDGDFD--MIETLYGVGYRFA 238
>gi|3025460 (U58131) PhoP [Clostridium acetobutylicum]
Length = 217
Score = 93.6 bits (229), Expect = 1e-18
Identities = 62/221 (28%), Positives = 118/221 (53%), Gaps = 8/221 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ IL+IED++ I+ + L G+ + +G L L FD I+LD+ LP +DG
Sbjct: 2 INILIIEDDAAISNLIKLNLNMAGYISEAVYNGEAALDLIEGRNFDLILLDIMLPKIDGF 61
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ +K++ K PV+ LTA+ S+ +K++G GADDY+ KPF E+ R++ + R
Sbjct: 62 SLFQKIKY---KGIPVIFLTAKTSVTDKVSGLRMGADDYITKPFDGMELLARIDNVLRH- 117
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ L+ D+E L+ + +++ G+++ L ++ L++ V+TR+ + +W
Sbjct: 118 YDKNEKSLKFEDIEVQLEEMRLKKNGQIIDLTVKEFELAAYLIKNKNIVLTRERIAEELW 177
Query: 181 G-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
G + L D ++ +I +R +D ++T +GYR+
Sbjct: 178 GYDYLGDCRTIDNYIQKIRKKLDWK---DKVKTIFKMGYRL 215
>gi|625683|pir||A49903 phosphate regulatory protein ChvI -
Agrobacterium tumefaciens
Length = 241
Score = 93.2 bits (228), Expect = 2e-18
Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 24/239 (10%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
I +++D+ +I ++ LE G+ V+ DG + + + + D+ +P MDG+E+
Sbjct: 4 IALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGMEL 63
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
++LR ++ PV+ LT++D ++L G GADD++ KPF+ + + R+ A+ RR
Sbjct: 64 LQRLRQKS--DIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASS 121
Query: 123 ----------------LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEAT 166
Q R LE G L + + +G+ + L T IL +L A
Sbjct: 122 REASAATGGTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSLAPAA 181
Query: 167 PAVVTRQDLETRVWGEEL-PDSDSLRVHIHGLR---AVVDKPFDVPLIQTRHGIGYRIA 221
R L + E++ D ++ HI LR +VD FD +I+T +G+GYR A
Sbjct: 182 GRGEKRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKLVDGDFD--MIETLYGVGYRFA 238
>gi|3860984|emb|CAA14884| (AJ235271) PETR PROTEIN (ompR) [Rickettsia
prowazekii]
Length = 225
Score = 92.8 bits (227), Expect = 2e-18
Identities = 60/222 (27%), Positives = 118/222 (53%), Gaps = 6/222 (2%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ IL+++D+S I A L +L + V A + +L +D I+LD+ LP + G+
Sbjct: 6 IHILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNYDLIILDVMLPRITGL 65
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL-SRR 119
+ +R +A P++MLTA ++++ G ++GA DY+ KPF +E+ +R+N L +
Sbjct: 66 DFATTIR-DAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNY 124
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+T +++ G+ YN T E + +++ L+ T K+L+ L++ + +R +L +
Sbjct: 125 NFKKETNIIKFGNNFYNCTTKEFTKNDQIVSLSSTEHKLLEILIKNSGKSTSRFELSKIM 184
Query: 180 WGEELPDSDSLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRI 220
G + S+ V I +R+ + D P + ++T GY +
Sbjct: 185 GGLSM---RSIDVQITRIRSKIEDNPKEPKYLKTVRNEGYAL 223
>gi|6093700|sp|P31079|PETR_RHOCA PETR PROTEIN
Length = 245
Score = 91.3 bits (223), Expect = 7e-18
Identities = 77/242 (31%), Positives = 119/242 (48%), Gaps = 25/242 (10%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVH--EFDAIVLDLNLPGMDGI 60
+L+++D+ I L +L G V D L + EF+ IVLD+ +PG DG+
Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLFTLSGLEFNLIVLDVMMPGEDGL 68
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLI--KPFALQEVEVRLNALSR 118
+ R LR + TP+L+LTAR ++ G ++GADDYL KPF +E+ +R+NA+ R
Sbjct: 69 SLTRDLRT--KMATPILLLTARGETRERIEGLEAGADDYLFTPKPFEPKELLLRINAILR 126
Query: 119 RGKGLQT---RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPA----VVT 171
R T + L G L Y+LD E+ + + ++L T + ALM A V+
Sbjct: 127 RVPEAVTAGPKYLSLGPLRYDLDRGELSQGDQPVRL--TATEAFTALMRIFAAHAGEVIG 184
Query: 172 RQDL------ETRVWGEELPDSDSLRVHIHGLRAVVDKPFDVP---LIQTRHGIGYRIAT 222
R +L + EE ++ V I LR ++ P +QT G+GY +A
Sbjct: 185 RTELIEELGRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRFTYLQTVRGLGYMLA- 243
Query: 223 PD 224
PD
Sbjct: 244 PD 245
>gi|2613088|gb|AAB84278.1| (AF030316) OmpR [Yersinia enterocolitica]
Length = 192
Score = 90.9 bits (222), Expect = 9e-18
Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 11/189 (5%)
Query: 45 FDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPF 104
F +VLDL LPG DG+ +CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF
Sbjct: 2 FHLMVLDLMLPGEDGLSICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPF 60
Query: 105 ALQEVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLK 157
+E+ R+ A+ RR + V+ G + NL T E+ R + + L
Sbjct: 61 NPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFA 120
Query: 158 ILQALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHG 215
+L+AL+ ++R L G E + S+ V I LR +V++ P IQT G
Sbjct: 121 VLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWG 180
Query: 216 IGYRIATPD 224
+GY + PD
Sbjct: 181 LGY-VFVPD 188
>gi|2613084|gb|AAB84276.1| (AF030314) OmpR [Shigella flexneri]
Length = 192
Score = 89.3 bits (218), Expect = 3e-17
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 45 FDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPF 104
F +VLDL LPG DG+ +CR+LR+++ P++M+TA+ +++ G + GADDY+ KPF
Sbjct: 2 FHLMVLDLMLPGEDGLSICRRLRSQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPF 60
Query: 105 ALQEVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLK 157
+E+ R+ A+ RR + V+ G + NL T E+ R + + L
Sbjct: 61 NPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTRREFA 120
Query: 158 ILQALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGL-RAVVDKPFDVPLIQTRHG 215
+L+AL+ ++R L G E + S+ V I L R V + P IQT G
Sbjct: 121 VLKALVSHPRDALSRDKLMNLARGREYSAMERSIDVQISRLARMVEEDPAHPRYIQTVWG 180
Query: 216 IGYRIATPD 224
+GY + PD
Sbjct: 181 LGY-VFVPD 188
>gi|602401 (U07746) OmpR [Xenorhabdus nematophilus]
Length = 239
Score = 87.8 bits (214), Expect = 8e-17
Identities = 70/232 (30%), Positives = 114/232 (48%), Gaps = 11/232 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+ILV++D+ + A L YL E+G V AA+ L I+LDL LPG D
Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLMLPGEDDCL 65
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG- 120
+LR++ P++M++A+ +++ G + GADDYL KPF +E+ R+ + RR
Sbjct: 66 SAEELRSQ-NNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRLVLRRQT 124
Query: 121 ---KGLQT---RVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
G T V++ G E +L T E+ + L L +L+ L+ ++R
Sbjct: 125 HELPGAPTSDDTVVKFGKFETDLGTREMFHHDEQLSLTSGEFSVLKVLVSYPREPLSRDK 184
Query: 175 LETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGYRIATPD 224
L + G E + S+ V + LR ++++ P IQT G+GY + PD
Sbjct: 185 LMSLARGREYGAMERSIDVQVSRLRRLIEEDPAQPRYIQTVWGLGY-VFIPD 235
>gi|1169089|sp|P44895|CPXR_HAEIN TRANSCRIPTIONAL REGULATORY PROTEIN
CPXR HOMOLOG >gi|1074524|pir||C64159 hypothetical
protein HI0837 - Haemophilus influenzae (strain Rd KW20)
>gi|1573851 (U32765) response regulator (cpxR)
[Haemophilus influenzae Rd]
Length = 227
Score = 87.8 bits (214), Expect = 8e-17
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 10/228 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
++L+++D+ ++ L LE G V+ A +G+ L + + ++LD+ +P ++GIE
Sbjct: 3 KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQ-KLNESYKLVLLDVMMPKLNGIE 61
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+++R + PV+MLTAR +++ G + GADD L KPF +E+ R+ A+ RR
Sbjct: 62 TLKEIRKVSN--VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA 119
Query: 122 GLQTRVLETGDLEYNLDTLEVRR-----RGKLLQLNPTGLKILQALMEATPAVVTRQDLE 176
+ L ++ TL + L L KIL L+++ VV+R++L
Sbjct: 120 SPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELS 179
Query: 177 TRVWGEEL-PDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIAT 222
V + L P SL +HI LR + K + P +T G GY + T
Sbjct: 180 LEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGYALVT 227
>gi|2500753|sp|P55701|Y4XI_RHISN PROBABLE TRANSCRIPTIONAL REGULATORY
PROTEIN Y4XI >gi|2182717 (AE000106) Y4xI [Rhizobium sp.
NGR234]
Length = 226
Score = 87.8 bits (214), Expect = 8e-17
Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 4/226 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR L+++ +D+ + L + G AVD ++ ++L+L LP DG+
Sbjct: 1 MRTLLVD--TDLTRAVRGALGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDGL 58
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ R+LR++ P ++++ D L+ +++ F+SGADD+L KP + E+ R+ AL RR
Sbjct: 59 DWLRQLRSDGYS-VPAVIMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRS 117
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ ++E G+L ++ +V G L + L IL+ L+ +V R LE +++
Sbjct: 118 TQITCPIIEFGNLHFDPIGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLY 177
Query: 181 G-EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATPDA 225
+ ++L I+ LR + + I+T GIGY + DA
Sbjct: 178 SFNDEVSGNALEAGIYRLRGYLSRSGATLRIRTVRGIGYTLELTDA 223
>gi|1621045 (U50932) GltR [Pseudomonas aeruginosa]
Length = 242
Score = 87.0 bits (212), Expect = 1e-16
Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
IL+++D+ +I L YL G V + G E +LD+ LP DG +
Sbjct: 8 ILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDGFSL 67
Query: 63 CRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
CR +R+ R P++MLTA +++ G + GADDYL KPF+ +E+ R+ AL RR +
Sbjct: 68 CRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRRAQ 127
Query: 122 GLQTRVLETGDL----EYNLDTLEVR---RRGKLLQLNPTGLKILQALMEATPAVVTRQD 174
Q R GD+ ++ LDT+ R G+ L+ +L+ ++ ++ R
Sbjct: 128 FTQVR---GGDVLAFEDWRLDTVSHRLFHEDGEEFFLSGADFALLKLFLDHPQQILDRDT 184
Query: 175 LETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIA 221
+ G E LP + + + LR + P LIQT G GY +A
Sbjct: 185 IANATRGREVLPLERIVDMAVSRLRQRLRDTGKAPRLIQTVRGSGYLLA 233
>gi|1172480|sp|P45189|PHOB_HAEIN PHOSPHATE REGULON TRANSCRIPTIONAL
REGULATORY PROTEIN PHOB >gi|1075136|pir||F64120
phosphate regulon transcriptional regulatory protein
(phoB) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574213 (U32818) phosphate regulon transcriptional
regulatory protein (phoB) [Haemophilus influenzae Rd]
Length = 231
Score = 86.2 bits (210), Expect = 2e-16
Identities = 63/224 (28%), Positives = 118/224 (52%), Gaps = 5/224 (2%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
+IL++ED I + +L ++ + V A+D T ++ + I+LD LPG GI+
Sbjct: 4 KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAIN-KIKENPKLILLDWMLPGRSGIQ 62
Query: 62 VCRKLRN-EARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+ ++ E+ P++MLTA+ + ++ + ++GADDY+ KPF+ Q + R+ A+ RR
Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
Q++ ++ +L + + V + + + L+ T K+L M V +R+ L R+W
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182
Query: 181 GEELP-DSDSLRVHIHGLRAVVDKPFDVP-LIQTRHGIGYRIAT 222
+L + ++ +I LR + PF IQT G GYR ++
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNL-APFQCEHYIQTVRGSGYRFSS 225
>gi|2613090|gb|AAB84279.1| (AF030317) OmpR [Proteus vulgaris]
Length = 193
Score = 85.8 bits (209), Expect = 3e-16
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 48 IVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQ 107
IVLDL LPG DG+ +CR+LR++ P++M+TA+ +++ G + GADDY+ KPF +
Sbjct: 5 IVLDLMLPGEDGLSICRRLRSQ-NNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPR 63
Query: 108 EVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQ 160
E+ R+ A+ RR ++ G + NL T E+ + + L +L+
Sbjct: 64 ELLARIRAVLRRQANELPGAPSQDNAIISFGKFKLNLGTREMFHEEEHMPLTSGEFAVLK 123
Query: 161 ALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHGIGY 218
L+ ++R L + G E + S+ V I LR ++++ P IQT G+GY
Sbjct: 124 VLVSHLREPLSRDKLMSLARGREYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGY 183
Query: 219 RIATPD 224
+ PD
Sbjct: 184 -VFVPD 188
>gi|2613086|gb|AAB84277.1| (AF030315) OmpR [Enterobacter cloacae]
Length = 192
Score = 85.4 bits (208), Expect = 4e-16
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 45 FDAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPF 104
F +VLDL LPG G+ +CR+L +++ P++M+TA+ +++ G + GADDY+ KPF
Sbjct: 2 FHLMVLDLMLPGEAGVSICRRLASQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPF 60
Query: 105 ALQEVEVRLNALSRR-------GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLK 157
+E+ R+ A+ RR + V+ G + NL T E+ R + + L
Sbjct: 61 NPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTNGEFA 120
Query: 158 ILQALMEATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGLRAVVDK-PFDVPLIQTRHG 215
+L+AL+ ++R L G E + S+ V I LR +V++ P IQT G
Sbjct: 121 VLKALVSHPREPLSRDKLMNLARGREYSAMEASIDVQISRLRRMVEEDPAHPRYIQTVWG 180
Query: 216 IGYRIATPD 224
+GY + PD
Sbjct: 181 LGY-VFVPD 188
>gi|1666499|emb|CAA70482| (Y09296) response regulator of
two-component regulatory system [Wolinella succinogenes]
Length = 223
Score = 84.3 bits (205), Expect = 9e-16
Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGL-HLAVVHEFDAIVLDLNLPGMDG 59
M+I ++EDN + + + L E G+ VD DG L HL H +LD+++P +DG
Sbjct: 1 MKIFLLEDNPKLREAIEETLSENGYRVDSFEDGQEALEHLDGSHLL--YILDIHVPRIDG 58
Query: 60 IEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 119
+E+ ++ K PV+++++ LD + G D+L KPF L E+ + + L
Sbjct: 59 LELLALIQGRFIK-APVIIISSFVDLDVIRQAYRHGCADFLKKPFFLDELLFKTHRLC-- 115
Query: 120 GKGLQTRVLETGDLEY-NLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETR 178
G ++ G+ + +L+ + R G+ L L+P ++L+ L+ A +V+ +++E
Sbjct: 116 --GKLHPLIPLGEETFLDLENALILREGQSLLLSPKEKRLLELLVRARGLLVSFEEIEEY 173
Query: 179 VWGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
VW E +++R I LR + IQT GIGYR+
Sbjct: 174 VWEEGEVPRENIRSMIRQLRLKI----PASSIQTHKGIGYRL 211
>gi|2632486|emb|CAB11994| (Z99105) similar to two-component response
regulator [YbdK] [Bacillus subtilis]
>gi|3599623|dbj|BAA33098| (AB006424) ybdJ [Bacillus
subtilis]
Length = 223
Score = 83.9 bits (204), Expect = 1e-15
Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 10/223 (4%)
Query: 2 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61
RIL++ED+ I L L+ G+ V + DG L +V+ + D +++D+ LPG DG +
Sbjct: 5 RILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVL--SVIQKVDLVIMDVMLPGEDGYQ 62
Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
+ K++ + PV+ L+AR+ +D+KL G G +DY++KPF +E+ +R+ +
Sbjct: 63 MSAKIK-KLGLGIPVIFLSARNDMDSKLQGLQIG-EDYMVKPFDPRELLLRMRNMLEHHY 120
Query: 122 GLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGL--KILQALMEATPAVVTRQDLETRV 179
G T++ L + T +V ++ T + KI L E +++T++ +
Sbjct: 121 GTFTQIKH---LYIDAVTKKVFNESLHDEVLFTAIERKIFFYLYENRDSILTKEHFFEYL 177
Query: 180 WGEELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIAT 222
W E + + + VHI +RA ++ +I+ +G GYR+ T
Sbjct: 178 WQLEDRNPNIVNVHIKKIRAKINDQAG-EMIENIYGEGYRLNT 219
>gi|281708|pir||S28674 hypothetical protein 2 - Rhizobium sp.
(strain IC3342) >gi|152259 (M38698) lcrB gene product
[Rhizobium sp.]
Length = 238
Score = 81.5 bits (198), Expect = 6e-15
Identities = 62/231 (26%), Positives = 115/231 (48%), Gaps = 15/231 (6%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
+++++D+ I + L YLE+ G V A + ++ L + D ++LD+ LP +G+E+
Sbjct: 4 LIIVDDDPRIRSMLSRYLEDEGFRVRLA-ENISQLRRVLSPSVDLVLLDIGLPDGNGLEL 62
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R++ +A + P ++++ RD +++ G + GADDY+ KPF L+E+ R+ ++ RR +
Sbjct: 63 AREI--DANFRVPTIIVSGRDDDVDRIIGLEMGADDYVSKPFNLRELLARVRSVLRRSQR 120
Query: 123 LQ----TRVLETGDLEYNLDTLEVRRR------GKLLQLNPTGLKILQALMEATPAVVTR 172
+ G ++ L+ RR G+ ++L +L + V+TR
Sbjct: 121 AMPLGPAQKATAGIFHFDGWMLDADRRQLTSTAGQTIELTTGEFDLLMVFVTHPGRVLTR 180
Query: 173 QDLETRVWGEELPDSD-SLRVHIHGLRA-VVDKPFDVPLIQTRHGIGYRIA 221
L + G D ++ V + LRA V D P D I++ G GY A
Sbjct: 181 DFLLDQTRGRTREAFDRAIDVQVTRLRAKVEDDPGDPRRIKSVRGAGYVFA 231
>gi|2126074|pir||I69716 torCAD response regulator - Escherichia coli
>gi|1122858|emb|CAA63922| (X94231) TorR [Escherichia
coli]
Length = 230
Score = 80.4 bits (195), Expect = 1e-14
Identities = 63/228 (27%), Positives = 105/228 (45%), Gaps = 15/228 (6%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
I+++ED A L Y + G+ V A G + D I+LD+NLP +G+ +
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R LR R ++++T R +++ G + GADDY+ KP L+E+ VR+ L R
Sbjct: 65 TRALRE--RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122
Query: 123 LQTRVLETGDLEY-------NLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
+ T D Y N+ + R G+ ++L ++L A + +++R+ L
Sbjct: 123 ARQAQPHTQDNLYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182
Query: 176 ETRVWGE--ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 221
+ E PD ++ V I LR L+ T+HG GY +A
Sbjct: 183 LRMLSARRVENPDLRTVDVLIRRLR----HKLSADLLVTQHGEGYFLA 226
>gi|2507607|sp|P38684|TORR_ECOLI TORCAD OPERON TRANSCRIPTIONAL
REGULATORY PROTEIN TORR >gi|1651487|dbj|BAA36137|
(D90736) TorCAD response regulator [Escherichia coli]
>gi|1651493|dbj|BAA35762| (D90737) TorCAD response
regulator [Escherichia coli] >gi|1787229 (AE000201)
response transcriptional regulator for torA (sensor
TorS) [Escherichia coli]
Length = 230
Score = 80.0 bits (194), Expect = 2e-14
Identities = 63/228 (27%), Positives = 105/228 (45%), Gaps = 15/228 (6%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
I+++ED A L Y + G+ V A G + D I+LD+NLP +G+ +
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGKG 122
R LR R ++++T R +++ G + GADDY+ KP L+E+ VR+ L R
Sbjct: 65 TRALRE--RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122
Query: 123 LQTRVLETGDLEY-------NLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175
+ T D Y N+ + R G+ ++L ++L A + +++R+ L
Sbjct: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182
Query: 176 ETRVWGE--ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 221
+ E PD ++ V I LR L+ T+HG GY +A
Sbjct: 183 LRMLSARRVENPDLRTVDVLIRRLR----HKLSADLLVTQHGEGYFLA 226
>gi|2314190|gb|AAD08088.1| (AE000612) response regulator
[Helicobacter pylori 26695]
Length = 223
Score = 77.6 bits (188), Expect = 8e-14
Identities = 50/224 (22%), Positives = 108/224 (47%), Gaps = 8/224 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L+IE NS + + L +G D G +L + +D +++ + +
Sbjct: 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS----DKNAL 56
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+++ E VL+ + + + ++ F+ GADDY+ KP+ + ++ + + R
Sbjct: 57 SFVSRIK-EKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPY--RSIKALVARIEARL 113
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ + V+E GDL + D ++ +G+ +++ ++L L +V+++ L +W
Sbjct: 114 RFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW 173
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
E E+ + + V I+ +R +DKP + +++T GYR P
Sbjct: 174 EEPEMVTPNVIEVAINQIRQKMDKPLGISMVETVRRRGYRFCYP 217
>gi|2073506|emb|CAA72451| (Y11777) transcriptional regulatory
protein [Rickettsia prowazekii]
Length = 146
Score = 76.9 bits (186), Expect = 1e-13
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ IL+++D+S I A L +L + V A + +L +D I+LD+ LP + G+
Sbjct: 6 IHILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNYDLIILDVMLPRITGL 65
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL-SRR 119
+ +R +A P++MLTA ++++ G ++GA DY+ KPF +E+ +R+N L +
Sbjct: 66 DFATTIR-DAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNY 124
Query: 120 GKGLQTRVLETGDLEYNLDTLE 141
+T +++ G+ YN T E
Sbjct: 125 NFKKETNIIKFGNNFYNCTTKE 146
>gi|4511977|gb|AAD21537.1| (AF088896) aerobic respiration control
protein [Zymomonas mobilis]
Length = 241
Score = 76.9 bits (186), Expect = 1e-13
Identities = 58/232 (25%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
I+++ED++ + A + L+E G+ G D I++D+ LPG +G+++
Sbjct: 6 IMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNGLDL 65
Query: 63 CRKLRNEARKQT-PVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRGK 121
R+LR+ ++ PV+ L+ARD +++ G + G DDY+ KPF +E+ R+ A+ RR +
Sbjct: 66 TRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLRRSQ 125
Query: 122 GL-------QTRVLETGDLEYNLDTLEVRR-RGKLLQLNPTGLKILQALMEATPAVVTRQ 173
+ Q+ ++ + D E+ G ++L+ +L + ++ V+ R+
Sbjct: 126 AVKEADGNPQSHLIHFEGWVLDPDRRELHSPTGAGVELSGAEFDLLLSFLQHAQRVIGRE 185
Query: 174 DLETRVWGEELPDSD-SLRVHIHGLRAVVDKPFDV-PLIQTRHGIGYRIATP 223
L SD S+ V + LR + + +I+T G+GY P
Sbjct: 186 RLLELSRSRLSEASDRSIDVLVSRLRRKLSSQTEAGDMIRTIRGVGYMFTVP 237
>gi|4154918 (AE001473) putative TRANSCRIPTIONAL REGULATOR
[Helicobacter pylori J99]
Length = 223
Score = 76.5 bits (185), Expect = 2e-13
Identities = 50/224 (22%), Positives = 107/224 (47%), Gaps = 8/224 (3%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
MR+L+IE NS + + L +G D G +L + +D +++ + +
Sbjct: 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS----DKNAL 56
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
+++ E VL+ + + + ++ F+ GADDY+ KP+ + ++ + + R
Sbjct: 57 SFVSRIK-EKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPY--RSIKALVARIEARL 113
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
+ + V+E GDL + D ++ +G+ +++ ++L L +V+++ L +W
Sbjct: 114 RFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW 173
Query: 181 GE-ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
E E+ + + V I+ +R +DKP + ++T GYR P
Sbjct: 174 EEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYP 217
>gi|2853598 (AF031898) CheY [Pseudomonas putida]
Length = 124
Score = 73.4 bits (177), Expect = 2e-12
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHA-VDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
M+IL+++D S + + + L + G + A DG T L + +D +V D N+PGM G
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTEEADDGTTALPMLENGHYDFLVTDWNMPGMSG 60
Query: 60 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 118
I++ RK+R +E K PVLM+TA D + +G + Y++KPF Q ++ ++ +
Sbjct: 61 IDLLRKVRASEKLKTMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFE 120
Query: 119 RGKG 122
R G
Sbjct: 121 RVNG 124
>gi|5830532|emb|CAB54574.1| (AJ006395) response regulator
[Streptococcus pneumoniae]
Length = 217
Score = 73.4 bits (177), Expect = 2e-12
Identities = 60/223 (26%), Positives = 106/223 (46%), Gaps = 9/223 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M ILV +D I + +L E G+ V A DG L +VLDL +P G
Sbjct: 1 MNILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKFQDLPIHLMVLDLMMPRKSGF 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 120
EV +++ + PV++L+A + FD ADD++ KPF+L + R+ AL RR
Sbjct: 61 EVLKEINQ--KHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSLVLLVKRIKALIRRY 118
Query: 121 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 180
++ + D+ + + + + + + L P L +L+ L++ V++R+ + +
Sbjct: 119 YVIED-LWRYQDVTVDFTSYKAHYKNEEIDLKPKELLVLKCLIQHKNQVLSREQILEEIS 177
Query: 181 GE--ELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIA 221
+ +LP + V+I LR K + I T +GY+I+
Sbjct: 178 KDVADLPCDRVVDVYIRTLR----KKLALDCIVTVKNVGYKIS 216
>gi|2500739|sp|Q51455|CHEY_PSEAE CHEMOTAXIS PROTEIN CHEY
>gi|94801|pir||S20545 phosphate acceptor regulatory
protein - Pseudomonas aeruginosa >gi|45323|emb|CAA43549|
(X61231) CheY [Pseudomonas aeruginosa]
Length = 124
Score = 71.0 bits (171), Expect = 8e-12
Identities = 41/124 (33%), Positives = 67/124 (53%), Gaps = 2/124 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAAD-GVTGLHLAVVHEFDAIVLDLNLPGMDG 59
M+IL+++D S + + + L + G AD G T L + FD +V D N+PGM G
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTG 60
Query: 60 IEVCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 118
I++ R +R + R K PVLM+TA D + +G + Y++KPF Q ++ ++ +
Sbjct: 61 IDLLRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFE 120
Query: 119 RGKG 122
R G
Sbjct: 121 RVNG 124
>gi|2914154|pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
>gi|2914155|pdb|1AB5|B Chain B, Structure Of Chey Mutant
F14n, V21t
Length = 125
Score = 71.0 bits (171), Expect = 8e-12
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++DNS + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 61
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 62 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
>gi|2914156|pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
>gi|2914157|pdb|1AB6|B Chain B, Structure Of Chey Mutant
F14n, V86t
Length = 125
Score = 71.0 bits (171), Expect = 8e-12
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++DNS + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 61
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM TA +N + +GA Y++KPF +E +LN +
Sbjct: 62 LELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
>gi|230455|pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys)
(S56C)
Length = 128
Score = 70.6 bits (170), Expect = 1e-11
Identities = 40/118 (33%), Positives = 67/118 (55%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ F I+ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMDG 64
Query: 60 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|1688294 (U78087) CheY [Burkholderia pseudomallei]
Length = 131
Score = 70.6 bits (170), Expect = 1e-11
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHA-VDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
M+ILV++D + + + L+E G++ VD A DG+ GL +D ++ D N+P +DG
Sbjct: 5 MKILVVDDFPTMRRIVRNLLKELGYSNVDEAEDGLAGLARLRGGGYDFVISDWNMPNLDG 64
Query: 60 IEVCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+ + +++R +A PVLM+TA +N + +GA Y++KPF ++ +LN +
Sbjct: 65 LAMLKEIRADASLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPFTAATLDEKLNKI 122
>gi|116292|sp|P06657|CHEY_SALTY CHEMOTAXIS PROTEIN CHEY
>gi|72607|pir||QREBCY chemotaxis protein cheY -
Salmonella typhimurium >gi|153909 (M12131) CheY protein
[Salmonella typhimurium]
Length = 129
Score = 70.2 bits (169), Expect = 1e-11
Identities = 40/118 (33%), Positives = 67/118 (55%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ F I+ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDG 65
Query: 60 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|515285|pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF|
Chey
Length = 128
Score = 70.2 bits (169), Expect = 1e-11
Identities = 40/118 (33%), Positives = 67/118 (55%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ F I+ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDG 64
Query: 60 IEVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|6952814|gb|AAF32415.1| (AF069392) chemotaxis protein CheY
[Vibrio parahaemolyticus]
Length = 126
Score = 69.9 bits (168), Expect = 2e-11
Identities = 38/121 (31%), Positives = 68/121 (55%), Gaps = 2/121 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
M+IL+++D S + + + L + G + A DG+T L + +FD +V D N+PGM G
Sbjct: 5 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQG 64
Query: 60 IEVCRKLRNEAR-KQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSR 118
I++ + +R +A K PVLM+TA + + +G + Y++KPF ++ +L +
Sbjct: 65 IDLLKHIRADAELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLEKIFE 124
Query: 119 R 119
R
Sbjct: 125 R 125
>gi|116291|sp|P06143|CHEY_ECOLI CHEMOTAXIS PROTEIN CHEY
>gi|72606|pir||QRECCY chemotaxis protein cheY -
Escherichia coli >gi|145534 (K02175) CheY protein (cheY)
[Escherichia coli] >gi|1736535|dbj|BAA15698| (D90830)
Chemotaxis protein CheY [Escherichia coli] >gi|1788191
(AE000282) chemotaxis regulator transmits chemoreceptor
signals to flagelllar motor components [Escherichia
coli]
Length = 129
Score = 68.3 bits (164), Expect = 5e-11
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|230822|pdb|3CHY| CheY >gi|576050|pdb|1CHN| Chey Complexed With
Mg2+ In The Active Site >gi|3402111|pdb|1EAY|A Chain A,
Chey-Binding (P2) Domain Of Chea In Complex With Chey
From Escherichia Coli >gi|3402112|pdb|1EAY|B Chain B,
Chey-Binding (P2) Domain Of Chea In Complex With Chey
From Escherichia Coli >gi|4139461|pdb|1A0O|A Chain A,
Chey-Binding Domain Of Chea In Complex With Chey
>gi|4139463|pdb|1A0O|C Chain C, Chey-Binding Domain Of
Chea In Complex With Chey >gi|4139465|pdb|1A0O|E Chain
E, Chey-Binding Domain Of Chea In Complex With Chey
>gi|4139467|pdb|1A0O|G Chain G, Chey-Binding Domain Of
Chea In Complex With Chey >gi|5107492|pdb|1BDJ|A Chain
A, Complex Structure Of Hpt Domain And Chey
Length = 128
Score = 68.3 bits (164), Expect = 5e-11
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|999670|pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1
Inserted, And Ala 2 Replaced By Ser
(Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 68.3 bits (164), Expect = 5e-11
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>gi|1421458|pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46
Structures)
Length = 128
Score = 68.3 bits (164), Expect = 5e-11
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>gi|6435696|pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A
Hyperactive Chey Mutant
Length = 128
Score = 67.9 bits (163), Expect = 7e-11
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTPATLEEKLNKI 122
>gi|145525 (M13463) cheY peptide [Escherichia coli]
Length = 129
Score = 67.5 bits (162), Expect = 9e-11
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 123
>gi|2507377|sp|P30855|EVGS_ECOLI PUTATIVE SENSOR PROTEIN EVGS
PRECURSOR >gi|1788713 (AE000325) putative sensor for
regulator EvgA [Escherichia coli]
>gi|1799781|dbj|BAA16241| (D90867) PUTATIVE SENSOR
PROTEIN EVGS PRECURSOR (EC 2.7.3.-). [Escherichia coli]
Length = 1197
Score = 67.5 bits (162), Expect = 9e-11
Identities = 39/116 (33%), Positives = 58/116 (49%), Gaps = 1/116 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ IL+ +D+ L L G+ VD A DGV LH + +D ++ D+N+P MDG
Sbjct: 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGF 1018
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
E+ RKLR E P+ LTA + + G G + L KP L ++ L+ L
Sbjct: 1019 ELTRKLR-EQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073
>gi|6573134|gb|AAF17563.1| (AF201840) sensor protein EvgS1
[Escherichia coli]
Length = 1197
Score = 67.5 bits (162), Expect = 9e-11
Identities = 39/116 (33%), Positives = 58/116 (49%), Gaps = 1/116 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ IL+ +D+ L L G+ VD A DGV LH + +D ++ D+N+P MDG
Sbjct: 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGF 1018
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
E+ RKLR E P+ LTA + + G G + L KP L ++ L+ L
Sbjct: 1019 ELTRKLR-EQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073
>gi|6573136|gb|AAF17564.1|AF201841_1 (AF201841) sensor protein EvgS4
[Escherichia coli]
Length = 1197
Score = 67.5 bits (162), Expect = 9e-11
Identities = 39/116 (33%), Positives = 58/116 (49%), Gaps = 1/116 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ IL+ +D+ L L G+ VD A DGV LH + +D ++ D+N+P MDG
Sbjct: 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGF 1018
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
E+ RKLR E P+ LTA + + G G + L KP L ++ L+ L
Sbjct: 1019 ELTRKLR-EQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073
>gi|2073556 (U62023) sensor/regulator protein RpfA [Erwinia
carotovora subsp. carotovora]
Length = 929
Score = 67.1 bits (161), Expect = 1e-10
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+R++ ++DN +G LEE+ + G + A +++ D I++D+ +PGMDGI
Sbjct: 675 LRVMAVDDNPANLKLIGTLLEEQVETIILCESGQDAIAQAELNQCDIILMDIQMPGMDGI 734
Query: 61 ---EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALS 117
E+ R++ + A TP++ +TA+ + SG DDYL KP Q ++ L +
Sbjct: 735 CASELIRQIPHHA--TTPIIAVTAQTMTGEREHLLRSGMDDYLAKPIDEQMLKSVLTRHA 792
Query: 118 R-----RGKGLQTRVL-ETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVT 171
R R +G T +L E D + +LD +++ G +LQ L++ P V
Sbjct: 793 RQDPLKRNRGEMTGLLNEHDDSQLSLDWALAQQQA--ANKPELGRDLLQMLLDFLPEV-- 848
Query: 172 RQDLETRVWGEELPDSDSLRVHIHG 196
++ +E + G+ D L +HG
Sbjct: 849 QRKIENVLKGQTDDDIIELVHKLHG 873
>gi|2983588 (AE000724) transcriptional regulator (NtrC family)
[Aquifex aeolicus]
Length = 439
Score = 67.1 bits (161), Expect = 1e-10
Identities = 36/114 (31%), Positives = 63/114 (54%), Gaps = 1/114 (0%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
M +LVIED+ L +YL +G V+ A G L F+ ++LDL LP ++G+
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGL 60
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLN 114
E+ + ++ E +T V+++T ++ + GA D+L KP L+E+E+ +N
Sbjct: 61 EILKWIK-ERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTIN 113
>gi|1421405|pdb|1YMU|A Chain A, Signal Transduction Protein Chey
Mutant With Met 17 Replaced By Gly (M17g)
>gi|1421406|pdb|1YMU|B Chain B, Signal Transduction
Protein Chey Mutant With Met 17 Replaced By Gly (M17g)
Length = 130
Score = 66.3 bits (159), Expect = 2e-10
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 66
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA Y++KPF +E +LN +
Sbjct: 67 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
>gi|1942868|pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 66.3 bits (159), Expect = 2e-10
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 1 MRILVIEDNSDIAANLGDYLEERG-HAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDG 59
++ LV++D S + + + L+E G + V+ A DGV L+ + ++ D N+P MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 IEVCRKLRNE-ARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNAL 116
+E+ + +R + A PVLM+TA +N + +GA +++KPF +E +LN +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
>gi|1710787|sp|P52108|RSTA_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN
RSTA >gi|1079807 (U41101) RstA [Escherichia coli]
>gi|1742647|dbj|BAA15346| (D90803) Transcriptional
regulatory protein RstA. [Escherichia coli]
>gi|1742658|dbj|BAA15356| (D90804) Transcriptional
regulatory protein RstA. [Escherichia coli] >gi|1787893
(AE000256) response transcriptional regulatory protein
(RstB sensor) [Escherichia coli]
Length = 242
Score = 63.2 bits (151), Expect = 2e-09
Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 18/228 (7%)
Query: 3 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIEV 62
I+ +ED++++ + + YL + V G + D ++LD+ LPG DG+ +
Sbjct: 7 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 66
Query: 63 CRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKP------FALQEVEVRLNAL 116
CR LR A+ P+++LT+ DS N + + GA DY++K A + +R N
Sbjct: 67 CRDLR--AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 124
Query: 117 SRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLE 176
+ KGLQ L T + TL + +++ L T + + A E + T
Sbjct: 125 ATLTKGLQETSL-TPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH---- 179
Query: 177 TRVWGEELPDSDSLRVHIHGLR-AVVDKPFDVPLIQTRHGIGYRIATP 223
++ D D+L ++ G+ +D+ DV + + R + A P
Sbjct: 180 ----AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEP 223
>gi|585207|sp|Q05943|GLNR_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN
GLNR >gi|478299|pir||JN0831 GlnR protein - Streptomyces
coelicolor >gi|153283 (L03213) glnR [Streptomyces
coelicolor]
Length = 267
Score = 54.7 bits (129), Expect = 7e-07
Identities = 42/136 (30%), Positives = 62/136 (44%), Gaps = 5/136 (3%)
Query: 93 DSGADDYLIKPFALQEVEVRLNALSRR---GKGLQTRVLETGDLEYNLDTLEVRRRGKLL 149
D G DD L+ EVE RL + R G + GDL + T + +G++L
Sbjct: 89 DWGIDDVLLDTAGPAEVEARLRLATGRQQLGGDDSPMEIRNGDLSVDEATYSAKLKGRVL 148
Query: 150 QLNPTGLKILQALMEATPAVVTRQDLETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFDVP 208
L ++L+ L + V TR L VWG + + ++ VH+ LRA + P
Sbjct: 149 DLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLG-PEHES 207
Query: 209 LIQTRHGIGYRIATPD 224
LI T +GYR TP+
Sbjct: 208 LIGTVRNVGYRFVTPE 223
>gi|2916876|emb|CAA17624.1| (AL022004) hypothetical protein Rv0818
[Mycobacterium tuberculosis]
Length = 255
Score = 53.5 bits (126), Expect = 2e-06
Identities = 52/183 (28%), Positives = 79/183 (42%), Gaps = 9/183 (4%)
Query: 46 DAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFA 105
DA+++D G +CR L + R PVL + + L D G D+ L+
Sbjct: 44 DAVLVDARNDLSSGRGLCRLLSSTGRS-IPVLAVVSEGGL--VAVSADWGLDEILLLSTG 100
Query: 106 LQEVEVRLN-ALSRRGKGLQTRVL---ETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQA 161
E++ RL + RRG L G+L + T R RG+ L L ++L+
Sbjct: 101 PAEIDARLRLVVGRRGDLADQESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKY 160
Query: 162 LMEATPAVVTRQDLETRVWGEE-LPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220
L + V TR L VWG + + ++ VH+ LRA + P LI T +GY+
Sbjct: 161 LAQHAGRVFTRAQLLHEVWGYDFFGGTRTVDVHVRRLRAKLG-PEHEALIGTVRNVGYKA 219
Query: 221 ATP 223
P
Sbjct: 220 VRP 222
>gi|1403404|emb|CAA98360| (Z74024) hypothetical protein Rv2884
[Mycobacterium tuberculosis]
Length = 252
Score = 48.8 bits (114), Expect = 4e-05
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 10/225 (4%)
Query: 1 MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60
+ +L++ D +D+ + L + LE +V A G A + D ++D
Sbjct: 20 LEVLLLTDEADLESALPE-LESFAQSVQRAPLDDPGA--AKGADADVAIIDARADLAAAR 76
Query: 61 EVCRKLRNEARKQTPVLMLTARDSLDNKLT-GFDSGADDYLIKPFALQEVEVRLNALSRR 119
VCR+L A P L + A + N + D DD L+ E++ RL R
Sbjct: 77 RVCRRLTTSA----PALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITR 132
Query: 120 GKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRV 179
+ L+ GDL + + + L L T K++ L++ TR L V
Sbjct: 133 RRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREV 192
Query: 180 WGEELPDS-DSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
WG E ++ VH+ LRA + + +I T G+GY TP
Sbjct: 193 WGYECHGRIRTVDVHVRRLRAKLGAEHE-SMIDTVRGVGYMAVTP 236
>gi|1814224 (U57625) HrpG [Xanthomonas campestris pv. vesicatoria]
Length = 263
Score = 46.5 bits (108), Expect = 2e-04
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 7/186 (3%)
Query: 46 DAIVLDLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFA 105
+ ++ D + D + R + + TP+++L D DN L + +GA + L PF
Sbjct: 55 ELLIFDASCVAADDSSLLAWQRCHSGQPTPLIVLGRFDCADNILAWYRAGAQEVLALPFN 114
Query: 106 LQEVEVRLN-ALSRRGKGL-QTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALM 163
E+ VR A+S +T+ L G + D V GK + L I L
Sbjct: 115 SHELHVRAALAISPVAHACPETQHLSVGPYKLIRDENTVYLEGKPIALTAREFSIAWLLF 174
Query: 164 EATPAVVTRQDLETRVWGEELPDSD-SLRVHIHGLRAVVDKPFDVPLIQTR----HGIGY 218
+ R L VWG +D ++ HI+ LR + D ++ R HG
Sbjct: 175 SSPGVCFRRCQLAKAVWGSHTEFTDRTMEQHIYKLRKKLQLSGDSSAVRIRTVYSHGYKL 234
Query: 219 RIATPD 224
+A D
Sbjct: 235 ELALHD 240
>gi|1170464|sp|P43016|IAGA_SALTI INVASION PROTEIN IAGA
>gi|791140|emb|CAA56853| (X80892) iagA [Salmonella
typhi]
Length = 553
Score = 45.3 bits (105), Expect = 5e-04
Identities = 28/92 (30%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Query: 132 DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLR 191
D N+D VR K+ + P +L L+EA +V++ L +VWG+ + +SL
Sbjct: 18 DFILNMDGSLVRSEKKV-NIPPKEYAVLVILLEAAGKIVSKNTLLDQVWGDAEVNEESLT 76
Query: 192 VHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
I+ LR ++ + + I+T +G GYR P
Sbjct: 77 RCIYALRRILSEDKEHRYIETLYGQGYRFNRP 108
>gi|1170465|sp|P43015|IAGA_SALTY INVASION PROTEIN IAGA (PROTEIN
HILA) >gi|2126153|pir||S70817 hilA protein - Salmonella
typhimurium >gi|806901 (U25352) HilA [Salmonella
typhimurium]
Length = 553
Score = 45.3 bits (105), Expect = 5e-04
Identities = 28/92 (30%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Query: 132 DLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLR 191
D N+D VR K+ + P +L L+EA +V++ L +VWG+ + +SL
Sbjct: 18 DFILNMDGSLVRSEKKV-NIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLT 76
Query: 192 VHIHGLRAVVDKPFDVPLIQTRHGIGYRIATP 223
I+ LR ++ + + I+T +G GYR P
Sbjct: 77 RCIYALRRILSEDKEHRYIETLYGQGYRFNRP 108
>gi|2145544|pir||S70816 hilA protein - Salmonella typhimurium
(fragment)
Length = 87
Score = 44.1 bits (102), Expect = 0.001
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 144 RRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLRVHIHGLRAVVDK 203
R K + + P +L L+EA +V++ L +VWG+ + +SL I+ LR ++ +
Sbjct: 6 RSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSE 65
Query: 204 PFDVPLIQTRHGIGYRIATP 223
+ I+T +G GYR P
Sbjct: 66 DKEHRYIETLYGQGYRFNRP 85
>gi|6318173|emb|CAB60259.1| (AJ250862) MrsR1 protein [Bacillus sp.
HIL-Y85/54728]
Length = 213
Score = 31.7 bits (70), Expect = 5.8
Identities = 24/79 (30%), Positives = 39/79 (48%), Gaps = 4/79 (5%)
Query: 144 RRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLRVHIHGLRAVV-D 202
++ + + L KIL L + +V ++L + +L SL VHI LR V D
Sbjct: 121 KKNEYIPLAIQEFKILYLLYLNSNKIVCSEEL---IEYADLTGRSSLYVHISSLREKVED 177
Query: 203 KPFDVPLIQTRHGIGYRIA 221
P D ++QT+ G GY ++
Sbjct: 178 NPGDPKILQTKFGKGYLLS 196
>gi|115416|sp|P23890|CADC_ECOLI TRANSCRIPTIONAL ACTIVATOR CADC
>gi|281820|pir||C41968 transcriptional activator cadC -
Escherichia coli >gi|145452 (M67452) transcriptional
activator [Escherichia coli] >gi|536978 (U14003) cadC
gene product [Escherichia coli] >gi|1790576 (AE000486)
transcriptional activator of cad operon [Escherichia
coli]
Length = 512
Score = 31.3 bits (69), Expect = 7.6
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 123 LQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGE 182
+Q V+ G+ ++ R G+ L L P + +L + + V++R +L VW
Sbjct: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60
Query: 183 ELPDSDSLRVHIHGLR-AVVDKPFDVPL-IQTRHGIGYRIATP 223
+ + + I LR ++ D D P+ I T GY++ P
Sbjct: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103
>gi|3115359 (U77060) ToxR [Photobacterium profundum]
Length = 290
Score = 30.9 bits (68), Expect = 9.9
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 135 YNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVWGEE--LPDSDSLRV 192
Y+ ++ +L +L + L L+E A++TR L VW E+ D SL
Sbjct: 19 YDNSLIDQHESDELTRLGSNESRALGLLIEDPGAIITRNRLHDHVWREQGFEVDDSSLTQ 78
Query: 193 HIHGLR-AVVDKPFDVPLIQTRHGIGYRIATP 223
I LR A+ D I+T GY++ P
Sbjct: 79 AISTLRKALKDSTKSPEFIKTVPKRGYQMIAP 110
Database: nr
Posted date: Feb 20, 2000 12:20 AM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.320 0.140 0.398
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60188226
Number of Sequences: 457798
Number of extensions: 2365841
Number of successful extensions: 7048
Number of sequences better than 10.0: 885
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 5566
Number of HSP's gapped (non-prelim): 911
length of query: 225
length of database: 140,871,481
effective HSP length: 54
effective length of query: 171
effective length of database: 116,150,389
effective search space: 19861716519
effective search space used: 19861716519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 68 (30.9 bits)