BLASTP 2.0.10 [Aug-26-1999]
Query= XF-00P00-GL56
(347 letters)
Database: nr
457,798 sequences; 140,871,481 total letters
Graphical Overview:
Score E
Sequences producing significant alignments: (bits) Value
gi|2661727|emb|CAA57032| (X81123) unnamed protein product [Esch... 272 3e-72
gi|2661728|emb|CAA57033| (X81123) unnamed protein product [Esch... 272 3e-72
gi|6007538|gb|AAF00949.1|AF182718_10 (AF182718) VirB11 homolog ... 251 7e-66
gi|5929876|gb|AAD56621.1|AF141604_11 (AF141604) VirB11 [Brucell... 247 1e-64
gi|3860853|emb|CAA14753| (AJ235271) VIRB11 PROTEIN (virB11) [Ri... 214 1e-54
gi|420949|pir||F47301 VirB11 homolog - Bordetella pertussis 206 2e-52
gi|2126082|pir||I79275 traG protein - Escherichia coli plasmid ... 193 2e-48
gi|6498324|dbj|BAA87776.1| (AB016260) Probable virB11 gene [Agr... 182 4e-45
gi|138452|sp|P07169|VIBY_AGRT5 VIRB11 PROTEIN >gi|73237|pir||BX... 182 5e-45
gi|138453|sp|P05360|VIBY_AGRT9 VIRB11 PROTEIN >gi|73235|pir||BX... 176 2e-43
gi|6249472|emb|CAB60061.1| (Y19029) lvhB11 [Legionella pneumoph... 174 1e-42
gi|3184202|dbj|BAA28705| (AB011800) virB11 [Agrobacterium tumef... 170 1e-41
gi|5881170|gb|AAD55070.1|AF176227_4 (AF176227) VirB11 [Rhizobiu... 170 1e-41
gi|1196982 (J03216) unknown protein [Plasmid Ti] 168 7e-41
gi|4155017 (AE001481) cag island protein, DNA transfer protein ... 156 2e-37
gi|2313639|gb|AAD07592.1| (AE000566) virB11 homolog [Helicobact... 156 3e-37
gi|4754813|gb|AAD29043.1|AF130439_3 (AF130439) TraG homolog [Ps... 154 9e-37
gi|154832|gb|AAD15210| (M36786) virulence protein [Plasmid pTiC... 139 4e-32
gi|5031439|gb|AAD38172.1|AF152598_1 (AF152598) TadA [Actinobaci... 129 5e-29
gi|4539574|emb|CAB38493.1| (AL035636) putative secretory protei... 107 2e-22
gi|1688242 (U77780) secretory protein kinase [Chlorobium limicola] 104 9e-22
gi|541216|pir||S41474 traG protein - Salmonella typhimurium (pl... 101 8e-21
gi|466380|gb|AAA17043.1| (U07618) TrbB [Plasmid R751] >gi|15725... 99 7e-20
gi|2960083|emb|CAA17981.1| (AL022121) trbB [Mycobacterium tuber... 98 1e-19
gi|2649960 (AE001059) type II secretion system protein (gspE-2)... 97 2e-19
gi|5105588|dbj|BAA80901.1| (AP000062) 579aa long hypothetical p... 96 4e-19
gi|5105908|dbj|BAA81220.1| (AP000063) 476aa long hypothetical p... 86 4e-16
gi|2622833 (AE000927) secretory protein kinase [Methanobacteriu... 86 4e-16
gi|3256963|dbj|BAA29646| (AP000002) 537aa long hypothetical pro... 86 5e-16
gi|3257058|dbj|BAA29741| (AP000003) 1136aa long hypothetical pr... 86 5e-16
gi|4894275|gb|AAD32363.1|AAD32363 (AF065404) pXO1-59 [Bacillus ... 85 6e-16
gi|5458905|emb|CAB50392.1| (AJ248287) PUTATIVE FLAGELLA-RELATED... 85 1e-15
gi|348623|pir||C44020 TrbB - plasmid RK2 >gi|152556 (M93696) tr... 84 1e-15
gi|294707 (L05600) klbA [Plasmid RK2] 84 1e-15
gi|5458808|emb|CAB50295.1| (AJ248287) SECRETORY PROTEIN KINASE ... 84 2e-15
gi|4155921 (AE001554) DNA transfer protein [Helicobacter pylori... 79 6e-14
gi|1707774|emb|CAA69572| (Y08257) virB homolog [Sulfolobus solf... 78 1e-13
gi|2314595|gb|AAD08463.1| (AE000642) conjugative transfer regul... 77 2e-13
gi|2731648|gb|AAB93500.1| (U75584) export type III nucleotide b... 77 2e-13
gi|2833586|sp|Q58191|Y781_METJA HYPOTHETICAL PROTEIN MJ0781 >gi... 76 5e-13
gi|2649599 (AE001035) type II secretion system protein (gspE-3)... 75 9e-13
gi|2650297 (AE001081) type II secretion system protein (gspE-1)... 75 9e-13
gi|2495101|sp|Q58310|Y900_METJA HYPOTHETICAL PROTEIN MJ0900 >gi... 75 9e-13
gi|2649537 (AE001030) type II secretion system protein (gspE-4)... 75 9e-13
gi|1730018|sp|P54907|TRBB_AGRT6 CONJUGAL TRANSFER PROTEIN TRBB ... 71 2e-11
gi|2495100|sp|P55395|TRBB_RHISN PROBABLE CONJUGAL TRANSFER PROT... 68 2e-10
gi|2104781 (U97040) putative flagella-related protein I [Methan... 67 3e-10
gi|2982705|dbj|BAA25274| (AB006858) trbB [Agrobacterium tumefac... 65 8e-10
gi|5104356|dbj|BAA79671.1| (AP000060) 474aa long hypothetical V... 65 1e-09
gi|6470176|gb|AAF13630.1|AF188935_28 (AF188935) pXO2-25 [Bacill... 65 1e-09
gi|2495102|sp|Q58683|YC87_METJA HYPOTHETICAL PROTEIN MJ1287 >gi... 64 2e-09
gi|6459748|gb|AAF11513.1|AE002034_6 (AE002034) twitching mobili... 62 7e-09
gi|399795|sp|P31703|GSPE_ERWCA GENERAL SECRETION PATHWAY PROTEI... 57 3e-07
gi|6715487|gb|AAF26432.1|AF218835_3 (AF218835) PilT [Clostridiu... 57 3e-07
gi|2598402|emb|CAA70956| (Y09824) etpE [Escherichia coli] 56 5e-07
gi|3337001|dbj|BAA31760.1| (AB011549) Type II secretion pathway... 56 5e-07
gi|6458124|gb|AAF10020.1|AE001903_8 (AE001903) twitching motili... 55 7e-07
gi|399796|sp|P31702|GSPE_ERWCH GENERAL SECRETION PATHWAY PROTEI... 53 3e-06
gi|131593|sp|P15645|GSPE_KLEPN GENERAL SECRETION PATHWAY PROTEI... 53 5e-06
gi|1730571|sp|Q06581|PILT_NEIGO TWITCHING MOTILITY PROTEIN >gi|... 53 5e-06
gi|139789|sp|Q00512|GSPE_PSEAE GENERAL SECRETION PATHWAY PROTEI... 53 5e-06
gi|632718|bbs|152041 (S72391) PilT=ATP binding casette protein ... 53 5e-06
gi|3025701 (AF038655) pilus assembly protein PilB [Legionella p... 52 6e-06
gi|3328331|gb|AAC26823.1| (AF074716) PilT [Neisseria meningitidis] 52 8e-06
gi|3978479 (AF092918) outer membrane secretion protein R [Pseud... 52 1e-05
gi|130212|sp|P22608|PILB_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILB >... 51 2e-05
gi|4186120|emb|CAA10651| (AJ132364) PilB protein [Pseudomonas s... 50 2e-05
gi|1653652|dbj|BAA18564| (D90915) twitching motility protein [S... 50 3e-05
gi|399794|sp|P31741|GSPE_AERHY GENERAL SECRETION PATHWAY PROTEI... 50 4e-05
gi|1174585|sp|P45792|TAPB_AERHY TYPE IV PILUS ASSEMBLY PROTEIN ... 49 5e-05
gi|3220230 (AF059248) type IV pilus assembly protein TapB [Aero... 49 5e-05
gi|2983313 (AE000705) twitching motility protein PilT [Aquifex ... 49 7e-05
gi|2119784|pir||S64728 protein secretion protein xcpR - Pseudom... 48 9e-05
gi|6968897|emb|CAB73893.1| (AL139078) putative type II protein ... 48 9e-05
gi|4139237|gb|AAD05174.1| (AF110185) general secretory pathway ... 48 1e-04
gi|155380 (L02630) XpsE [Xanthomonas campestris] 48 2e-04
gi|1653530|dbj|BAA18443| (D90914) twitching mobility protein [S... 48 2e-04
gi|399797|sp|P31742|GSPE_XANCP GENERAL SECRETION PATHWAY PROTEI... 47 2e-04
gi|1170054|sp|P45759|GSPE_ECOLI PROBABLE GENERAL SECRETION PATH... 47 2e-04
gi|5918204|emb|CAB56296.1| (AJ249385) putative secretion protei... 47 2e-04
gi|2983859 (AE000742) general secretion pathway protein E [Aqui... 47 3e-04
gi|585224|sp|P37093|GSPE_VIBCH GENERAL SECRETION PATHWAY PROTEI... 46 3e-04
gi|1657238|emb|CAA70319| (Y09102) secretion protein XcpR [Acine... 46 3e-04
gi|4377128|gb|AAD18954| (AE001662) Genral Secretion Protein E [... 46 4e-04
gi|3329012|gb|AAC68173.1| (AE001327) Gen. Secretion Protein E [... 46 4e-04
gi|1170330|sp|P44622|HOFB_HAEIN PROTEIN TRANSPORT PROTEIN HOFB ... 46 6e-04
gi|791159 (L19085) mannose-sensitive hemagglutinin E [Vibrio ch... 45 8e-04
gi|4981922|gb|AAD36432.1|AE001790_4 (AE001790) motility protein... 45 8e-04
gi|5918203|emb|CAB56295.1| (AJ249385) twitching motility protei... 45 8e-04
gi|130214|sp|P24559|PILT_PSEAE TWITCHING MOBILITY PROTEIN >gi|7... 45 0.001
gi|2984344 (AE000775) twitching mobility protein [Aquifex aeoli... 45 0.001
gi|6458902|gb|AAF10736.1|AE001965_10 (AE001965) twitching motil... 45 0.001
gi|585697|sp|P37094|PILF_NEIGO TYPE IV PILUS ASSEMBLY PROTEIN P... 45 0.001
gi|1723860|sp|P52052|YGGR_ECOLI HYPOTHETICAL 36.0 KD PROTEIN IN... 44 0.002
gi|882479 (U28377) ORF_f341 [Escherichia coli] >gi|1789320 (AE0... 44 0.002
gi|548896|sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BIN... 43 0.004
gi|2984219 (AE000766) type IV pilus assembly protein TapB [Aqui... 43 0.004
gi|2120641|pir||S54702 pilU protein - Pseudomonas aeruginosa >g... 43 0.005
gi|4512533|dbj|BAA75182.1| (AB021078) ATP-binding protein [Plas... 43 0.005
gi|790209 (U17138) FimN [Dichelobacter nodosus] 42 0.007
gi|4455002|gb|AAD21030| (AF109904) type IV-A pilus assembly pro... 42 0.007
gi|1084133|pir||S55026 secretion protein - Aeromonas salmonicid... 42 0.009
gi|4417286|gb|AAD20411.1| (AC007019) putative shikimate kinase ... 42 0.009
gi|4512516|dbj|BAA75165.1| (AB021078) ATP-binding protein [Plas... 42 0.009
gi|456043 (L28105) homologous to PilB of Pseudomonas aeruginosa... 41 0.011
gi|847974 (U27184) BfpD [Escherichia coli] >gi|6009384|dbj|BAA8... 41 0.011
gi|847976 (U27184) BfpF [Escherichia coli] >gi|6009386|dbj|BAA8... 41 0.011
gi|1122405|emb|CAA92331| (Z68186) BfpD [Escherichia coli] 41 0.011
gi|1122407|emb|CAA92333| (Z68186) BfpF [Escherichia coli] 41 0.011
gi|2506492|sp|P36645|HOFB_ECOLI PROTEIN TRANSPORT PROTEIN HOFB ... 41 0.011
gi|267089|sp|P29480|TCPT_VIBCH TOXIN CORREGULATED PILUS BIOSYNT... 41 0.015
gi|3256099|emb|CAA10913| (AJ222649) sapF [Erwinia chrysanthemi] 41 0.015
gi|4981369|gb|AAD35919.1|AE001750_13 (AE001750) general secreti... 41 0.015
gi|3211748 (AF052207) competence protein [Streptococcus pneumon... 41 0.020
gi|548897|sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BIN... 40 0.026
gi|2895280 (AF026533) DotB [Legionella pneumophila] 39 0.044
gi|1352095|sp|P25953|CMG1_BACSU COMG OPERON PROTEIN 1 >gi|98254... 38 0.099
gi|4981025|gb|AAD35598.1|AE001727_10 (AE001727) comM protein [T... 38 0.13
gi|2649127 (AE001004) conserved hypothetical protein [Archaeogl... 37 0.22
gi|2687342|emb|CAA15883| (AL020958) glutamate uptake system ATP... 37 0.22
gi|3860666|emb|CAA14567| (AJ235270) POSSIBLE RIBONUCLEOTIDE TRA... 37 0.22
gi|6513866|gb|AAF14817.1| (AF000001) PilQ [Salmonella typhi] 37 0.22
gi|6459749|gb|AAF11514.1|AE002034_7 (AE002034) general secretio... 37 0.29
gi|6759908|gb|AAF28101.1|AF148682_1 (AF148682) oligopeptide per... 37 0.29
gi|5458263|emb|CAB49752.1| (AJ248285) type II secretion system ... 36 0.38
gi|4980785|gb|AAD35375.1|AE001710_10 (AE001710) ABC transporter... 36 0.50
gi|4980994|gb|AAD35568.1|AE001726_2 (AE001726) ABC transporter,... 36 0.50
gi|1947137 (AF000264) similar to the ATP-binding transport prot... 36 0.50
gi|2909592|emb|CAA17316| (AL021928) hypothetical protein Rv0194... 36 0.50
gi|3257731|dbj|BAA30414| (AP000006) 193aa long hypothetical pro... 36 0.50
gi|3328607|gb|AAC67793.1| (AE001293) Oligopeptide Transport ATP... 36 0.66
gi|1653498|dbj|BAA18411| (D90914) ABC transporter [Synechocysti... 35 0.86
gi|1698599 (U62129) ATP binding cassette (ABC) transporter homo... 35 0.86
gi|2226166|emb|CAA74450.1| (Y14080) hypothetical protein [Bacil... 35 0.86
gi|432992 (U03771) potential ATP-binding membrane transport pro... 35 1.1
gi|2665715|gb|AAB88475| (AF035413) MoaD [Agrobacterium tumefaci... 35 1.1
gi|3334814|emb|CAA19962| (AL031107) putative ABC transporter [S... 35 1.1
gi|2492566|sp|Q57335|Y036_HAEIN HYPOTHETICAL ABC TRANSPORTER AT... 34 1.5
gi|2984331 (AE000774) ABC transporter [Aquifex aeolicus] 34 1.5
gi|6136567|sp|O83681|Y675_TREPA HYPOTHETICAL PROTEIN TP0675 >gi... 34 1.5
gi|4376472|gb|AAD18354| (AE001606) Oligopeptide Transport ATPas... 34 1.5
gi|6288773|gb|AAF06736.1| (AF167431) sulfonyl urea receptor [Dr... 34 1.5
gi|6689164|emb|CAB65561.1| (AL136058) probable amino acid ABC t... 34 1.5
gi|1172056|sp|P45677|PEBC_CAMJE PROBABLE ABC TRANSPORTER ATP-BI... 34 1.9
gi|238466|bbs|63859 (S63858) orf 5' of rpoN [Rhizobium, NGR234,... 34 1.9
gi|541190|pir||B49454 transporter ATP-binding cassette homolog ... 34 1.9
gi|141100|sp|P25885|YHBG_RHIME PROBABLE ABC TRANSPORTER ATP-BIN... 34 1.9
gi|1001150|dbj|BAA10292| (D64001) general secretion pathway pro... 34 1.9
gi|2506114|sp|P37774|YECC_ECOLI HYPOTHETICAL AMINO-ACID ABC TRA... 34 1.9
gi|2058544 (U81957) putative ABC transporter subunit ComYA [Str... 34 1.9
gi|4928927|gb|AAD33775.1|AF139177_2 (AF139177) putative ATP bin... 34 1.9
gi|6644386|gb|AAF21041.1|AF210453_1 (AF210453) dynein heavy cha... 34 1.9
gi|477578|pir||A49227 sialidase - Actinomyces viscosus >gi|1418... 34 2.5
gi|98701|pir||S20590 exo-alpha-sialidase (EC 3.2.1.18) - Actino... 34 2.5
gi|1169418|sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING... 34 2.5
gi|1296822|emb|CAA91229| (Z56283) orf1 [Lactobacillus helveticus] 34 2.5
gi|2258373|gb|AAD11907.1| (AF007261) ATP-binding subunit of ABC... 34 2.5
gi|3116137|emb|CAA18886.1| (AL023288) AAA family ATPase [Schizo... 34 2.5
gi|3256912|dbj|BAA29595| (AP000002) 321aa long hypothetical oli... 34 2.5
gi|6459843|gb|AAF11601.1|AE002041_5 (AE002041) ABC transporter,... 34 2.5
gi|6968359|emb|CAB73179.1| (AL139076) ABC-type amino-acid trans... 34 2.5
gi|585069|sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING ... 33 3.3
gi|349229 (L08399) peripheral membrane protein [Escherichia coli] 33 3.3
gi|1652125|dbj|BAA17050| (D90902) ABC transporter [Synechocysti... 33 3.3
gi|2341015|gb|AAB67603.1| (AC002486) multidrug resistance prote... 33 3.3
gi|2648948 (AE000991) spermidine/putrescine ABC transporter, AT... 33 3.3
gi|2773332 (AF040718) ABC transporter CydC [Shigella flexneri] 33 3.3
gi|3603243 (AF031494) Dhc7 [Drosophila hydei] 33 3.3
gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772) oligopeptide ABC... 33 3.3
gi|5731362|gb|AAD48883.1| (U52150) ATPase [Vibrio cholerae] 33 3.3
gi|266795|sp|P12539|PIV2_ADEM1 MATURATION PROTEIN (PROTEIN IVA2) 33 4.3
gi|6446584|ref|NP_015535.1|| IVa2 protein >gi|209754 (M22245) I... 33 4.3
gi|2131012|emb|CAB09333| (Z95890) hypothetical protein Rv1747 [... 33 4.3
gi|2578388|emb|CAA15479.1| (AL008609) ABC-transporter atp-bindi... 33 4.3
gi|2649165 (AE001007) modification methylase, type III R/M syst... 33 4.3
gi|4587880|gb|AAD25906.1|AF069302_15 (AF069302) ABC transporter... 33 4.3
gi|5824445|emb|CAB54225.1| (AL021446) F14F4.3b [Caenorhabditis ... 33 4.3
gi|5824446|emb|CAB54226.1| (AL021446) similar to ABC transporte... 33 4.3
gi|266520|sp|P23886|CYDC_ECOLI TRANSPORT ATP-BINDING PROTEIN CY... 32 5.7
gi|729377|sp|P39057|DYHC_ANTCR DYNEIN BETA CHAIN, CILIARY >gi|8... 32 5.7
gi|157873 (L07065) P-glycoprotein/multidrug resistance protein ... 32 5.7
gi|422052|pir||S35546 ATP-dependent RNA helicase - fission yeas... 32 5.7
gi|227998|prf||1714373A dynein:SUBUNIT=beta heavy chain [Anthoc... 32 5.7
gi|1172616|sp|Q03319|PRH1_SCHPO PROBABLE ATP-DEPENDENT RNA HELI... 32 5.7
gi|1079107|pir||A47377 multidrug resistance protein Mdr50 - fru... 32 5.7
gi|1321667|dbj|BAA05547| (D26548) Ydr1 [Saccharomyces cerevisiae] 32 5.7
gi|2492589|sp|Q50614|YI19_MYCTU HYPOTHETICAL ABC TRANSPORTER AT... 32 5.7
gi|2245023|emb|CAB10443.1| (Z97341) RNA helicase [Arabidopsis t... 32 5.7
gi|2633804|emb|CAB13306| (Z99111) similar to ABC transporter (A... 32 5.7
gi|118965|sp|P23098|DYHC_TRIGR DYNEIN BETA CHAIN, CILIARY >gi|8... 32 5.7
gi|3257220|dbj|BAA29903| (AP000003) 327aa long hypothetical oli... 32 5.7
gi|4510377|gb|AAD21465.1| (AC007017) putative ATP-dependent RNA... 32 5.7
gi|4761215|gb|AAD29279.1|AF112365_2 (AF112365) ProVL [Streptomy... 32 5.7
gi|6015899|emb|CAB57726.1| (Y18930) hypothetical protein [Sulfo... 32 5.7
gi|1169168|sp|P45081|CYDC_HAEIN TRANSPORT ATP-BINDING PROTEIN C... 32 7.4
gi|6322980|ref|NP_013052.1|YBT1| bile acid transporter of ABC f... 32 7.4
gi|3582216 (AE001272) cytolysin B transport protein [Lactococcu... 32 7.4
gi|5441937|gb|AAD43183.1|AC005048_1 (AC005048) laminin beta pre... 32 7.4
gi|290801|gb|AAD15237| (L17003) member of super-family of ABC p... 32 9.8
gi|1729824|sp|P54683|TAGB_DICDI PRESTALK-SPECIFIC PROTEIN TAGB ... 32 9.8
gi|1175812|sp|P45221|YE67_HAEIN HYPOTHETICAL ABC TRANSPORTER AT... 32 9.8
gi|1945644|emb|CAB08051| (Z94043) hypothetical protein [Bacillu... 32 9.8
gi|2980641|emb|CAA72120| (Y11250) multi resistance protein [Ara... 32 9.8
gi|3142303 (AC002411) Strong similarity to MRP-like ABC transpo... 32 9.8
gi|3322406 (AE001199) thiamine ABC transporter, ATP-binding pro... 32 9.8
gi|4376676|gb|AAD18541| (AE001623) CT041 hypothetical protein [... 32 9.8
gi|4376693|gb|AAD18557| (AE001624) Transport ATP Binding Protei... 32 9.8
gi|6459421|gb|AAF11212.1|AE002008_7 (AE002008) Mg(2+) chelatase... 32 9.8
gi|6706264|emb|CAB65927.1| (AL136326) dynein heavy chain [Leish... 32 9.8
>gi|2661727|emb|CAA57032| (X81123) unnamed protein product
[Escherichia coli]
Length = 358
Score = 272 bits (689), Expect = 3e-72
Identities = 143/344 (41%), Positives = 208/344 (59%), Gaps = 23/344 (6%)
Query: 20 EMLAEYMEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIAS 79
+ +A+ + PL FLD + E+ + RP EVWT+ GWQ +VP LT L T I
Sbjct: 20 QAVAQLLRPLDRFLDAPEVTELSICRPGEVWTKTFEGWQVHEVPELTEPFLQALITAIIV 79
Query: 80 YNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFD 139
YNG A K V LPGG R + PA T+S IRK S+V KTL+EL+AEGAFD
Sbjct: 80 YNG---VAPKSVNYVVLPGGQRGTIAQAPAVIDGTLSFLIRKHSLVVKTLEELDAEGAFD 136
Query: 140 QVENVDASGT----------------LHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIV 183
+V + L P+EVELL LK+ I+EFL+ + + ++I
Sbjct: 137 TFTDVSFNKPSAEEANHYLTVQDFTRLEPFEVELLKLKRDGTIREFLEKCVLYKRNIIIA 196
Query: 184 GKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQ 243
GKTGSGKTT +S+ +P +ER++T+EDVHE+FL +HPN+VH+ Y G G+ ++ +
Sbjct: 197 GKTGSGKTTFARSLIEKVPPEERIITIEDVHELFLPNHPNRVHMLY---GYGAGRVSADE 253
Query: 244 AIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDS 302
+A+C+R PDRI L E+RG+EAWE++ ++ +GHPG I+T HA AL+ F++ LIK S
Sbjct: 254 CLAACMRQSPDRIFLAELRGNEAWEYLNSLNTGHPGSITTTHANNALQTFERCATLIKKS 313
Query: 303 ATGAHLDAAYIKKRVFETVDIVLYYVHHKLREIYYDPEFKRKQL 346
G L+ IK ++ T+D+VL++ KL E++YDP F + ++
Sbjct: 314 DVGRQLEMEMIKLVLYTTIDVVLFFKDRKLVEVFYDPIFSKSKM 357
>gi|2661728|emb|CAA57033| (X81123) unnamed protein product
[Escherichia coli]
Length = 337
Score = 272 bits (689), Expect = 3e-72
Identities = 143/342 (41%), Positives = 207/342 (59%), Gaps = 23/342 (6%)
Query: 22 LAEYMEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYN 81
+A+ + PL FLD + E+ + RP EVWT+ GWQ +VP LT L T I YN
Sbjct: 1 MAQLLRPLDRFLDAPEVTELSICRPGEVWTKTFEGWQVHEVPELTEPFLQALITAIIVYN 60
Query: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
G A K V LPGG R + PA T+S IRK S+V KTL+EL+AEGAFD
Sbjct: 61 G---VAPKSVNYVVLPGGQRGTIAQAPAVIDGTLSFLIRKHSLVVKTLEELDAEGAFDTF 117
Query: 142 ENVDASGT----------------LHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGK 185
+V + L P+EVELL LK+ I+EFL+ + + ++I GK
Sbjct: 118 TDVSFNKPSAEEANHYLTVQDFTRLEPFEVELLKLKRDGTIREFLEKCVLYKRNIIIAGK 177
Query: 186 TGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAI 245
TGSGKTT +S+ +P +ER++T+EDVHE+FL +HPN+VH+ Y G G+ ++ + +
Sbjct: 178 TGSGKTTFARSLIEKVPPEERIITIEDVHELFLPNHPNRVHMLY---GYGAGRVSADECL 234
Query: 246 ASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSAT 304
A+C+R PDRI L E+RG+EAWE++ ++ +GHPG I+T HA AL+ F++ LIK S
Sbjct: 235 AACMRQSPDRIFLAELRGNEAWEYLNSLNTGHPGSITTTHANNALQTFERCATLIKKSDV 294
Query: 305 GAHLDAAYIKKRVFETVDIVLYYVHHKLREIYYDPEFKRKQL 346
G L+ IK ++ T+D+VL++ KL E++YDP F + ++
Sbjct: 295 GRQLEMEMIKLVLYTTIDVVLFFKDRKLVEVFYDPIFSKSKM 336
>gi|6007538|gb|AAF00949.1|AF182718_10 (AF182718) VirB11 homolog
[Bartonella henselae]
Length = 356
Score = 251 bits (634), Expect = 7e-66
Identities = 139/336 (41%), Positives = 205/336 (60%), Gaps = 18/336 (5%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
+EP+ FL D +L EI +NRP +V TEG GW+ + P L+F+ +A ++ASY+ ++I
Sbjct: 20 LEPISTFLKDENLFEIVINRPYQVMTEGVEGWKTIETPALSFNELMGIAKVVASYSKQNI 79
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
+ P+LSA LPG R+Q+VIPPA E T+S+TIRKPS +L++L +G F E V
Sbjct: 80 SEKNPILSATLPGNERIQIVIPPAVEKNTISMTIRKPSSRSFSLEDLANKGLFSVCEQVS 139
Query: 146 ASGTLHPYEVELLALKKSNR----------IKEFLKLAMQHGLTLVIVGKTGSGKTTIGK 195
+ L+ Y L LK + FL A+Q ++I GKTGSGKTT+ K
Sbjct: 140 FT-PLNNYLSHLSELKHIDHDLVRAYAKKDFVFFLNQAVQCQKNILIAGKTGSGKTTLSK 198
Query: 196 SITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDR 255
++ IP DER++T+ED E+ + PN V + YS+DG+G S+ PK+ + S LRM+PDR
Sbjct: 199 ALIAKIPDDERIITIEDTPELVVPQ-PNYVSMIYSKDGQGLASVGPKELLESALRMRPDR 257
Query: 256 ILLTEMRGDEAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIK 314
ILL E+R A+ +++ V SGHPG I+T HA AL AF+Q+ L+K+S G L+ I+
Sbjct: 258 ILLQELRDGTAFYYIRNVNSGHPGSITTVHASTALAAFEQMTLLVKESEGGGDLERDDIR 317
Query: 315 KRVFETVDIVLYYVH----HKLREIYYDPEFKRKQL 346
+ +DI++ K+ EIYYDP FK++ +
Sbjct: 318 GLLISMIDIIIQCKRIEGKFKVTEIYYDP-FKQRNI 352
>gi|5929876|gb|AAD56621.1|AF141604_11 (AF141604) VirB11 [Brucella
suis]
Length = 397
Score = 247 bits (624), Expect = 1e-64
Identities = 126/287 (43%), Positives = 182/287 (62%), Gaps = 5/287 (1%)
Query: 25 YMEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKS 84
++EPLR +LDD + E+CVNRP EV+ E + W+ + VP L + H L T A + +
Sbjct: 25 HLEPLRPWLDDPQITEVCVNRPGEVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQD 84
Query: 85 ITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENV 144
I+ ++PVLSA LP G R+Q+V PPACE T+S+TIRKPS +TL++ +G F V +
Sbjct: 85 ISDSRPVLSAILPMGERIQIVRPPACEHGTISVTIRKPSFPRRTLEDYAQQGFFKHVRPM 144
Query: 145 DASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
S +L P+E ELLALK++ FL+ A+Q +V+ G+TGSGKTT+ K++ IP D
Sbjct: 145 --SKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDG--EGSLSINPKQAIASCLRMKPDRILLTEMR 262
+RL+ +EDV E+FL HPN VHLFY + E + + + SCLRMKP RILL E+R
Sbjct: 203 QRLIAIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELR 262
Query: 263 GDEAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHL 308
G EA++F+ SGH G I++ HAG F+++ ++ + G L
Sbjct: 263 GGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQL 309
>gi|3860853|emb|CAA14753| (AJ235271) VIRB11 PROTEIN (virB11)
[Rickettsia prowazekii]
Length = 334
Score = 214 bits (539), Expect = 1e-54
Identities = 116/306 (37%), Positives = 175/306 (56%), Gaps = 8/306 (2%)
Query: 22 LAEYMEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYN 81
L ++ P + + +NEI VN+P E W E R +P L H L L+A
Sbjct: 8 LETFLLPFKNLFAEEGINEIMVNKPGEAWVEKRGDIYSKQIPELDSDHLLALGRLVAQST 67
Query: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
+ I+ KP+LSA LP G R+Q+V PPACE + +IRKPS ++ TLDE GAFD
Sbjct: 68 EQMISEEKPLLSATLPNGYRIQIVFPPACEIGQIIYSIRKPSGMNLTLDEYAQMGAFDNT 127
Query: 142 ENVDASGTLHPYEVELLA-LKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNC 200
A+ +L + ++L +IKEF++ A+ ++I G T +GKTT +
Sbjct: 128 ----ATESLVDEDADILNNFLAEKKIKEFIRYAVISKKNIIISGGTSTGKTTFTNAALTE 183
Query: 201 IPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTE 260
IP ERL+TVED E+ L+ HPN+VHL S+ G+G ++ + I +CLR++PDRI++ E
Sbjct: 184 IPAIERLITVEDAREVVLSSHPNRVHLLASKGGQGRANVTTQDLIEACLRLRPDRIIVGE 243
Query: 261 MRGDEAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFE 319
+RG EA+ F++A+ +GHPG IST HA A +Q+ ++ + G + +KK +
Sbjct: 244 LRGKEAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQADFG--MPPEEVKKYILS 301
Query: 320 TVDIVL 325
VDIV+
Sbjct: 302 VVDIVV 307
>gi|420949|pir||F47301 VirB11 homolog - Bordetella pertussis
Length = 339
Score = 206 bits (519), Expect = 2e-52
Identities = 117/303 (38%), Positives = 174/303 (56%), Gaps = 6/303 (1%)
Query: 25 YMEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKS 84
+++ L +L + EICVNRP ++W E RNGW R + LT H LAT A + +
Sbjct: 15 HLQALHPWLSRQDIAEICVNRPGQLWYEDRNGWNRQESGALTLDHLHALATATARFCDRD 74
Query: 85 ITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENV 144
I +P+L+A+LPGG RVQ+V+PPACE T+S+TIRKP+ L EL D ++
Sbjct: 75 ICPERPLLAASLPGGERVQIVVPPACEPGTLSLTIRKPARRIWPLSEL----LRDTLDLP 130
Query: 145 DASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
G LL + +FL+LA+Q G +++ G+TGSGKTT+ +++ IP
Sbjct: 131 GVPGASQARPDPLLDPWRRGAWDDFLRLAVQAGKAILVAGQTGSGKTTLMNALSGEIPPR 190
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEG-SLSINPKQAIASCLRMKPDRILLTEMRG 263
ER+VT+EDV E+ L+ N VHL Y EG + +++ + + + LRM P RILL E+RG
Sbjct: 191 ERIVTIEDVRELRLDPATNHVHLLYGTPTEGRTAAVSATELLRAALRMAPTRILLAELRG 250
Query: 264 DEAWEFVKAVGSGHP-GISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVD 322
EA++F++A SGH GIST HA A A ++ + L + ++ V +D
Sbjct: 251 GEAFDFLQACASGHSGGISTCHAASADMALQRLTLMCMQHPNCQMLPYSTLRALVESVID 310
Query: 323 IVL 325
IV+
Sbjct: 311 IVV 313
>gi|2126082|pir||I79275 traG protein - Escherichia coli plasmid
pKM101 >gi|498884 (U09868) traG gene product
[Escherichia coli]
Length = 331
Score = 193 bits (486), Expect = 2e-48
Identities = 108/317 (34%), Positives = 183/317 (57%), Gaps = 6/317 (1%)
Query: 28 PLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITA 87
PLR +L+D ++ EI +N EV + +G + +T LA + S N ++ A
Sbjct: 11 PLREYLEDPTVFEIRINCFQEVICDTFSGRRVVQNAAITADFIRNLAKSLVSSNKLTMQA 70
Query: 88 NKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDAS 147
V+ LPGG R + +PPA T ++ RK DK L++L +EG F + S
Sbjct: 71 INDVI---LPGGIRGVICLPPAVIDGTTAVAFRKDLAADKNLEQLTSEGIFSDCRKITGS 127
Query: 148 G-TLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDER 206
+L + L L S + FL+ A++ T+VI G+TGSGKT + +++ + DER
Sbjct: 128 KQSLTDDDFFLKELHSSEKWPAFLQTAVEKKRTIVICGETGSGKTVLTRALLKSLHKDER 187
Query: 207 LVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEA 266
++ +EDVHE+ ++H V++ Y G+ ++ A+ +C+R+ P RI++TE+R D A
Sbjct: 188 VIILEDVHEVTVDHVVEAVYMMYGDAGKIG-PVSATDALRACMRLTPGRIIMTELRDDAA 246
Query: 267 WEFVKAVGSGHP-GISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIVL 325
W+++KA+ +GHP G+ + HA A +AF++I LIK + G LD + I + ++ T+D+V+
Sbjct: 247 WDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKATPIGRMLDMSDIMRMLYSTIDVVV 306
Query: 326 YYVHHKLREIYYDPEFK 342
+ K++EIY+DPE+K
Sbjct: 307 HMEKRKIKEIYFDPEYK 323
>gi|6498324|dbj|BAA87776.1| (AB016260) Probable virB11 gene
[Agrobacterium tumefaciens]
Length = 344
Score = 182 bits (457), Expect = 4e-45
Identities = 103/325 (31%), Positives = 177/325 (53%), Gaps = 8/325 (2%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
++P+ +LDD E+ +NRP E + + +F +P +++ +A L + + +
Sbjct: 11 LKPILEWLDDPRTEEVAINRPGEAFVRQAGAFLKFPLP-VSYDDLEDIAILAGALRKQDV 69
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+ + LP G R+Q+ +PP + TVS+TIR+PS +L E+ + +
Sbjct: 70 GPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQWK 129
Query: 146 ASGTLHPYEVE-LLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
H E +L + ++ FL + LT+++ G TGSGKTT+ K++ N IP
Sbjct: 130 GRKKRHDQHDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLINAIPPQ 189
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ERL+T+ED E+ + H N V L YS++G G ++ + + + LRM+PDRILL E+R D
Sbjct: 190 ERLITIEDTLELVIPHE-NHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDD 248
Query: 265 EAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
AW ++ V SGHPG IST H ++ F ++ +L+K SA GA L+ + + VD+
Sbjct: 249 AAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAVDV 308
Query: 324 VLYYVHH----KLREIYYDPEFKRK 344
++ + H ++ EI+ + +R+
Sbjct: 309 IVPFRAHGDIYEVGEIWLAADARRR 333
>gi|138452|sp|P07169|VIBY_AGRT5 VIRB11 PROTEIN >gi|73237|pir||BXAG58
virB11 protein - Agrobacterium tumefaciens plasmid
pTiC58 >gi|39163|emb|CAA37364| (X53264) ORF11 (virB11)
(AA 1 - 344) [Agrobacterium tumefaciens] >gi|154793
(J03320) virB11 gene product [Plasmid Ti]
>gi|737138|prf||1921363M virB11 protein [Agrobacterium
tumefaciens]
Length = 344
Score = 182 bits (456), Expect = 5e-45
Identities = 103/325 (31%), Positives = 177/325 (53%), Gaps = 8/325 (2%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
++P+ +LDD E+ +NRP E + + +F +P +++ +A L + + +
Sbjct: 11 LKPILEWLDDPRTEEVAINRPGEAFVRQAGAFLKFPLP-VSYDDLEDIAILAGALRKQDV 69
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+ + LP G R+Q+ +PP + TVS+TIR+PS +L E+ + +
Sbjct: 70 GPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQWK 129
Query: 146 ASGTLHPYEVE-LLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
H E +L + ++ FL + LT+++ G TGSGKTT+ K++ N IP
Sbjct: 130 ERKKRHAQHDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLINAIPPQ 189
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ERL+T+ED E+ + H N V L YS++G G ++ + + + LRM+PDRILL E+R D
Sbjct: 190 ERLITIEDTLELVIPHE-NHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDD 248
Query: 265 EAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
AW ++ V SGHPG IST H ++ F ++ +L+K SA GA L+ + + VD+
Sbjct: 249 AAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAVDV 308
Query: 324 VLYYVHH----KLREIYYDPEFKRK 344
++ + H ++ EI+ + +R+
Sbjct: 309 IVPFRAHGDIYEVGEIWLAADARRR 333
>gi|138453|sp|P05360|VIBY_AGRT9 VIRB11 PROTEIN >gi|73235|pir||BXAG55
virB11 protein - Agrobacterium tumefaciens plasmid
pTi15955 and pTiA6 >gi|757733|emb|CAA29982| (X06826)
virB11 polypeptide (AA 1-343) [Agrobacterium
tumefaciens]
Length = 343
Score = 176 bits (442), Expect = 2e-43
Identities = 101/325 (31%), Positives = 175/325 (53%), Gaps = 8/325 (2%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
++P+ +LDD EI +NRP E + + + +P +++ +A L + + +
Sbjct: 11 LKPILEWLDDPKTEEIAINRPGEAFVRQAGIFTKMPLP-VSYDDLEDIAILAGALRKQDV 69
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+ + LPGG R+Q+ +PP + TVS+TIR+PS L E+ + +
Sbjct: 70 GPRNPLCATELPGGERLQICLPPTVPSGTVSLTIRRPSSRVSGLKEVSSRYDASRWNQWQ 129
Query: 146 ASGTLHPYEVELLALKKSNR-IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
+ E + N ++ FL + LT+++ G TGSGKTT+ K++ + IP
Sbjct: 130 TRRKRQNQDDEAILQHFDNGDLEAFLHACVVSRLTMLLCGPTGSGKTTMSKTLISAIPPQ 189
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ERL+T+ED E+ + H N V L YS++G G +++ + + + LRM+PDRILL EMR D
Sbjct: 190 ERLITIEDTLELVIPHD-NHVRLLYSKNGAGLGAVSAEHLLQASLRMRPDRILLGEMRDD 248
Query: 265 EAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
AW ++ V SGHPG IST H ++ F ++ +L+K S GA L+ + + +D+
Sbjct: 249 AAWAYLSEVVSGHPGSISTIHGANPIQGFKKLFSLVKSSVQGASLEDRTLIDMLSTAIDV 308
Query: 324 VL----YYVHHKLREIYYDPEFKRK 344
++ Y +++ EI+ + +R+
Sbjct: 309 IIPFRAYEDVYEVGEIWLAADARRR 333
>gi|6249472|emb|CAB60061.1| (Y19029) lvhB11 [Legionella pneumophila]
Length = 334
Score = 174 bits (436), Expect = 1e-42
Identities = 117/321 (36%), Positives = 180/321 (55%), Gaps = 14/321 (4%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
+ PL+ FL+D ++EI +N+P EV+ E RFD+P LT + +L LIA+ N +++
Sbjct: 16 LSPLQDFLEDEHVSEILINKPKEVFIERHGQLTRFDIPVLTSQYLRRLFLLIANENKQTL 75
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENV- 144
+ + PVLS L G+RVQ+VIPPA T+S IRK S+ + DE + +G F V
Sbjct: 76 SESTPVLSGNLADGSRVQLVIPPASLYETLS--IRKFSLKQVSFDEYKTKGFFSSARGVG 133
Query: 145 --DASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
+ S L + ELL L + +EF++ A+ ++I G T SGKTT S IP
Sbjct: 134 IKEHSECLDKSD-ELLELYDTKNWQEFIRQAIVSKKNIIISGGTSSGKTTFLNSCVGQIP 192
Query: 203 TDERLVTVEDVHEMFLNHHPNKVHL-FYSRDGEGSLSINPKQAIASCLRMKPDRILLTEM 261
ERL+T+ED +EM + H N V L + GE + I + + + LR++PDRI++ E+
Sbjct: 193 LHERLITLEDTYEMDV-PHTNIVRLKALKQVGEQTQKITMQDLVQATLRLRPDRIIMGEI 251
Query: 262 RGDEAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFET 320
RG E ++FV A +GH G ++T HA AF ++ L K + A +D A I K + E
Sbjct: 252 RGRELFDFVSACSTGHSGALATIHANNPKVAFMRMAQLYKLNQV-AGMDEADIYKVLHEV 310
Query: 321 VDIVLYYVH----HKLREIYY 337
+D+++ +L E+YY
Sbjct: 311 IDVIVQLQKTPDGRRLVEVYY 331
>gi|3184202|dbj|BAA28705| (AB011800) virB11 [Agrobacterium
tumefaciens]
Length = 344
Score = 170 bits (427), Expect = 1e-41
Identities = 98/325 (30%), Positives = 173/325 (53%), Gaps = 8/325 (2%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
++P+ +LDD E+ +NRP E + + +F + +++ +A L + + +
Sbjct: 11 LKPILEWLDDPRTEEVAINRPGEAFVRQAGVFTKFPLS-VSYDDLEDIAILAGALRKQDV 69
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+ + LP G R+Q+ +PP + TVS+TIR+PS L E+ + +
Sbjct: 70 GPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSFRVSGLKEVSSRYDAPRWNQWQ 129
Query: 146 ASGTLHPYEVELLALKKSNR-IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
E++ N ++ FL + L++++ G TGSGKTT+ K++ + IP
Sbjct: 130 TRKMRQDQHDEVILRHYDNGDLEAFLHACVVGRLSMLLCGPTGSGKTTMSKTLISAIPPQ 189
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ERL+T+ED E+ + H N V L YS++G G ++ + + + LRM+PDRILL EMR D
Sbjct: 190 ERLITIEDTLELVIPHE-NHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMRDD 248
Query: 265 EAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
AW ++ V SGHPG IST H ++ F ++ +L+K S GA L+ + + +D+
Sbjct: 249 AAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSVQGASLEDRTLIDMLATAIDV 308
Query: 324 VL----YYVHHKLREIYYDPEFKRK 344
++ Y +++ EI+ + +R+
Sbjct: 309 IIPFRAYDDVYEVGEIWLAADARRR 333
>gi|5881170|gb|AAD55070.1|AF176227_4 (AF176227) VirB11 [Rhizobium
etli]
Length = 369
Score = 170 bits (427), Expect = 1e-41
Identities = 99/325 (30%), Positives = 175/325 (53%), Gaps = 8/325 (2%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
+ P+ +LDD E+ +NRP E + + + +P L+++ +A L + + +
Sbjct: 36 LNPVLEWLDDPRTEEVAINRPGEAFLRQGGIFTKMSLP-LSYNDLEDIAILAGALRKQDV 94
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+ + LPGG R+Q+ +PPA TVS+TIR+P+ L+ + + +
Sbjct: 95 GPRNPLCATELPGGERLQICLPPAVLAGTVSLTIRRPASHVSGLNGVTDRYDVSRWNQWE 154
Query: 146 ASGTLHPYEVE-LLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
+ E +L S ++ FL + LT+++ G TGSGKTT+ K++ + IP
Sbjct: 155 RRKRRRDQQDETILRHYDSGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ 214
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ERL+T+ED E+ + H N V L Y+++ G ++ + + + LRM+PDRILL EMR D
Sbjct: 215 ERLITIEDTLELVIPHE-NHVRLLYAKNAGGPDAVTAEHLLQASLRMRPDRILLGEMRDD 273
Query: 265 EAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
AW ++ V SGHPG IST H ++ F ++ +L+K S+ GA L+ + + +D+
Sbjct: 274 AAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSSQGAGLEDRTLIDMLSSAIDV 333
Query: 324 VL----YYVHHKLREIYYDPEFKRK 344
++ Y +++ EI+ + +R+
Sbjct: 334 IIPFRAYGDIYEVEEIWLAADARRR 358
>gi|1196982 (J03216) unknown protein [Plasmid Ti]
Length = 343
Score = 168 bits (421), Expect = 7e-41
Identities = 96/283 (33%), Positives = 156/283 (54%), Gaps = 5/283 (1%)
Query: 26 MEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSI 85
++P+ +LDD EI +NRP E + + + +P +++ +A L + + +
Sbjct: 11 LKPILEWLDDPKTEEIAINRPGEAFVRQAGIFTKMPLP-VSYDDLEDIAILAGALRKQDV 69
Query: 86 TANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+ + LPGG R+Q+ +PP + TVS+TIR+PS L E+ + +
Sbjct: 70 GPRNPLCATELPGGERLQICLPPTVPSGTVSLTIRRPSSRVSGLKEVSSRYDASRWNQWQ 129
Query: 146 ASGTLHPYEVELLALKKSNR-IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
+ E + N ++ FL + LT+++ G TGSGKTT+ K++ + IP
Sbjct: 130 TRRKRQNQDDEAILQHFDNGDLEAFLHACVVSRLTMLLCGPTGSGKTTMSKTLISAIPPQ 189
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ERL+T+ED E+ + H N V L YS++G G +++ + + + LRM+PDRILL EMR D
Sbjct: 190 ERLITIEDTLELVIPHD-NHVRLLYSKNGAGLGAVSAEHLLQASLRMRPDRILLGEMRDD 248
Query: 265 EAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGA 306
AW ++ V SGHPG IST H G ++ F ++ +L+K S GA
Sbjct: 249 AAWAYLSEVVSGHPGSISTIH-GANIQGFKKLFSLVKSSVQGA 290
>gi|4155017 (AE001481) cag island protein, DNA transfer protein
[Helicobacter pylori J99]
Length = 330
Score = 156 bits (391), Expect = 2e-37
Identities = 100/313 (31%), Positives = 158/313 (49%), Gaps = 32/313 (10%)
Query: 32 FLDDTSLNEICVNRPSEVWTEGRNG-WQRFDV---PCLTFSHCCKLATLIASYNGKSI-T 86
FL ++ EIC N VW NG WQ FDV + S A AS+ K+I
Sbjct: 39 FLKMENITEICYNGDKVVWVLKNNGEWQPFDVRNKKAFSLSRLMHFARCCASFKKKTIDN 98
Query: 87 ANKPVLSAALPGGARVQVVIPPAC-ETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+LS+ L G RVQ+V+ P T+SI+IR PS E +G ++ ++N +
Sbjct: 99 YENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKE 158
Query: 146 ASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE 205
+ + A+K I G +++ G TGSGKTT KSI IP +E
Sbjct: 159 QA---------ISAIKDGIAI----------GKNVIVCGGTGSGKTTYIKSIMEFIPKEE 199
Query: 206 RLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE 265
R++++ED E+ HH N LF+ +I + SCLRM+PDRI+L E+R E
Sbjct: 200 RIISIEDTEEIVFKHHKNYTQLFFGG------NITSADCLKSCLRMRPDRIILGELRSSE 253
Query: 266 AWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIV 324
A++F + SGH G ++T HAG + EAF ++ + ++ ++ + + + +D++
Sbjct: 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMI 313
Query: 325 LYYVHHKLREIYY 337
++ HHK + +Y
Sbjct: 314 VHINHHKQCDEFY 326
>gi|2313639|gb|AAD07592.1| (AE000566) virB11 homolog [Helicobacter
pylori 26695]
Length = 330
Score = 156 bits (390), Expect = 3e-37
Identities = 100/313 (31%), Positives = 158/313 (49%), Gaps = 32/313 (10%)
Query: 32 FLDDTSLNEICVNRPSEVWTEGRNG-WQRFDV---PCLTFSHCCKLATLIASYNGKSI-T 86
FL ++ EIC N VW NG WQ FDV + S A AS+ K+I
Sbjct: 39 FLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDN 98
Query: 87 ANKPVLSAALPGGARVQVVIPPAC-ETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVD 145
P+LS+ L G RVQ+V+ P T+SI+IR PS E +G ++ ++N +
Sbjct: 99 YENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKE 158
Query: 146 ASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE 205
+ + A+K I G +++ G TGSGKTT KSI IP +E
Sbjct: 159 QA---------ISAIKDGIAI----------GKNVIVCGGTGSGKTTYIKSIMEFIPKEE 199
Query: 206 RLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE 265
R++++ED E+ HH N LF+ +I + SCLRM+PDRI+L E+R E
Sbjct: 200 RIISIEDTEEIVFKHHKNYTQLFFGG------NITSADCLKSCLRMRPDRIILGELRSSE 253
Query: 266 AWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIV 324
A++F + SGH G ++T HAG + EAF ++ + ++ ++ + + + +D++
Sbjct: 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMI 313
Query: 325 LYYVHHKLREIYY 337
++ HHK + +Y
Sbjct: 314 VHINHHKQCDEFY 326
>gi|4754813|gb|AAD29043.1|AF130439_3 (AF130439) TraG homolog
[Pseudomonas putida]
Length = 340
Score = 154 bits (386), Expect = 9e-37
Identities = 111/330 (33%), Positives = 170/330 (50%), Gaps = 15/330 (4%)
Query: 22 LAEYMEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYN 81
L + PLR +LDD + EI N+ +V + P +T+ + L + S N
Sbjct: 18 LRRELRPLRKYLDDPEVFEIRENKFGQVVCDTPKVLHAD--PRITYDYLWALNDHLLSLN 75
Query: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
G T P+ LP G+R PPA T+ ++IRK V K+L +L EG F +V
Sbjct: 76 GLGRT---PISYVKLPDGSRGTFCWPPATVEGTMLMSIRKHLPVSKSLAQLAQEGRFAKV 132
Query: 142 ENVDASG--TLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITN 199
+ S +L P+E ELLAL + ++ FL LA++ + + G TGSGKTT+
Sbjct: 133 RHRKQSEQFSLEPFEEELLALLEKGDVEGFLTLAVKTKRNIAVAGPTGSGKTTLTPLADG 192
Query: 200 CIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLT 259
T ER++ +ED HE+ N +L Y GEG ++ ++ + C+R+ PDRI LT
Sbjct: 193 GGATVERVLLMEDTHEIDDNRLDEVGYLMY---GEGDGRMSARECLKLCMRLSPDRIFLT 249
Query: 260 EMRGDEAWEFVKAVGSGHPGI---STAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKR 316
E+R D AW+++ +GH G T A AL A+ + ++ S GA LD I K
Sbjct: 250 ELRDDAAWDYLAGANTGHLGAFSRRTLTARPALLAYRHVGKGLRKS-VGA-LDYDVIMKT 307
Query: 317 VFETVDIVLYYVHHKLREIYYDPEFKRKQL 346
+ T+D+V+Y ++ EI YDP FK++ +
Sbjct: 308 INTTLDVVVYMEKREVLEILYDPMFKKQAM 337
>gi|154832|gb|AAD15210| (M36786) virulence protein [Plasmid pTiC58]
>gi|809650|emb|CAA68594| (Y00535) virB [Agrobacterium
tumefaciens]
Length = 251
Score = 139 bits (346), Expect = 4e-32
Identities = 82/237 (34%), Positives = 133/237 (55%), Gaps = 7/237 (2%)
Query: 114 TVSITIRKPSMVDKTLDELEAEGAFDQVENVDASGTLHPYEVE-LLALKKSNRIKEFLKL 172
TVS+TIR+PS +L E+ + + H E +L + ++ FL
Sbjct: 5 TVSLTIRRPSSRVSSLKEVSSRYDAPRWNQWKERKKRHAQHDEAILRYYDNGDLEAFLHA 64
Query: 173 AMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRD 232
+ LT+++ G TGSGKTT+ K++ N IP ERL+T+ED E+ + H N V L YS++
Sbjct: 65 CVVGRLTMLLCGPTGSGKTTMSKTLINAIPPQERLITIEDTLELVIPHE-NHVRLLYSKN 123
Query: 233 GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPG-ISTAHAGGALEA 291
G G ++ + + + LRM+PDRILL E+R D AW ++ V SGHPG IST H ++
Sbjct: 124 GAGLGAVTAEHLLQASLRMRPDRILLGEIRDDAAWAYLSEVVSGHPGSISTIHGANPVQG 183
Query: 292 FDQIVALIKDSATGAHLDAAYIKKRVFETVDIVLYYVHH----KLREIYYDPEFKRK 344
F ++ +L+K SA GA L+ + + VD+++ + H ++ EI+ + +R+
Sbjct: 184 FKKLFSLVKSSAQGASLEDRTLIDMLATAVDVIVPFRAHGDIYEVGEIWLAADARRR 240
>gi|5031439|gb|AAD38172.1|AF152598_1 (AF152598) TadA [Actinobacillus
actinomycetemcomitans]
Length = 425
Score = 129 bits (320), Expect = 5e-29
Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 34/312 (10%)
Query: 19 SEMLAEYME---PLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLAT 75
+E++A+ +E PLR + D ++N+I VN P+++W E ++ D ++ +A
Sbjct: 61 AEIVADEIEGYGPLRDLMADDTINDILVNGPNDIWVERAGILEKTDKEFVSNEQLTDIAK 120
Query: 76 LIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAE 135
+ + G+ I P++ + LP G+R+ VI P T SI+IRK S KTL EL
Sbjct: 121 RLVARVGRRIDDGSPLVDSRLPDGSRLNAVIAPIALDGT-SISIRKFSKNKKTLQELVNF 179
Query: 136 GAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGK 195
G+ R EFL + + +++ G TGSGKTT+
Sbjct: 180 GSM-------------------------TRNGEFLNYCCRSRVNIIVSGGTGSGKTTLLN 214
Query: 196 SITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDG-EGSLSINPKQAIASCLRMKPD 254
+++N I ER++T+ED E+ L P+ V L G E + + + + + LRM+P+
Sbjct: 215 ALSNYISHTERVITLEDTAELRL-EQPHVVRLETRLAGVEHTGEVTMQDLVINALRMRPE 273
Query: 255 RILLTEMRGDEAWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYI 313
RI++ E RG EA++ ++A+ +GH G +ST HA +A ++ +++ S L+A I
Sbjct: 274 RIIVGECRGGEAFQMLQAMNTGHDGSMSTLHANSPRDATSRLESMVMMSNASLPLEA--I 331
Query: 314 KKRVFETVDIVL 325
++ + V+I++
Sbjct: 332 RRNISSAVNIIV 343
>gi|4539574|emb|CAB38493.1| (AL035636) putative secretory protein
[Streptomyces coelicolor]
Length = 523
Score = 107 bits (264), Expect = 2e-22
Identities = 85/307 (27%), Positives = 148/307 (47%), Gaps = 34/307 (11%)
Query: 28 PLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITA 87
PL L D S+ ++ V+ P VW + G + V + +LA +A+ G+ +
Sbjct: 186 PLEPLLADPSVTDVLVSAPDRVWVDRGGGLELAPVSFPDAAAVRRLAQRLATVAGRRLDD 245
Query: 88 NKPVLSAALPGGARVQVVIPP-ACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDA 146
+P + A LP G R+ V+PP A + +++ + +P TL EL A
Sbjct: 246 ARPWVDARLPDGTRLHAVLPPVAVDCTCLALRVVRPRAF--TLRELA------------A 291
Query: 147 SGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDER 206
+GT+ P +R+ L+ ++ L+ ++ G TGSGKTT+ ++ + DER
Sbjct: 292 AGTVPP---------GGDRV---LRALLRARLSFLVSGGTGSGKTTLLSALLGLVGPDER 339
Query: 207 LVTVEDVHEMFLNHHPNKVHL-FYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE 265
+V ED E+ HP+ V L + EG+ + + + LRM+PDR+++ E+RG E
Sbjct: 340 IVLAEDSAEL-RPDHPHVVRLETRPANQEGAGLVTLEDLVRQALRMRPDRLVVGEVRGPE 398
Query: 266 AWEFVKAVGSGHP-GISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIV 324
+ A+ +GH G T HA A + ++ AL T A L+ A + ++ + +V
Sbjct: 399 VVHLLAALNTGHEGGCGTVHANAAADVPARLEAL----GTTAGLNRAALHSQLAAALSVV 454
Query: 325 LYYVHHK 331
L+ V +
Sbjct: 455 LHLVRDR 461
>gi|1688242 (U77780) secretory protein kinase [Chlorobium limicola]
Length = 474
Score = 104 bits (258), Expect = 9e-22
Identities = 79/275 (28%), Positives = 135/275 (48%), Gaps = 30/275 (10%)
Query: 28 PLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITA 87
PL + D ++EI VN ++ E D+ +H K+ I S G+ I
Sbjct: 123 PLEPLIADPGVSEIMVNGHQNIYVEKNGCIYPTDIRFNDDAHLMKIIDKIVSRVGRRIDE 182
Query: 88 NKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDAS 147
P++ A LP G+RV VIPP V +TIR+ ++V Q+ +
Sbjct: 183 CSPMVDARLPDGSRVNAVIPPLALEGPV-LTIRRFAVVPL------------QMRDFIQK 229
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
T+ P ELL+ ++ ++I G TGSGKTT+ ++ IP+ ER+
Sbjct: 230 NTVTPQMAELLS------------ALVKVKCNIIISGGTGSGKTTLLNILSGFIPSSERI 277
Query: 208 VTVEDVHEMFL--NHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE 265
VT+ED E+ L +H + +G+G +++ + + + LRM+PDRI++ E+R E
Sbjct: 278 VTLEDTAELQLQQDHVVRMETRLPNIEGKGEITM--RALVKNXLRMRPDRIVIGEVRTSE 335
Query: 266 AWEFVKAVGSGHPG-ISTAHAGGALEAFDQIVALI 299
E ++A+ +GH G ++T HA + +A ++ L+
Sbjct: 336 VIEMLQAMNTGHDGSLTTIHANSSRDALGRLENLV 370
>gi|541216|pir||S41474 traG protein - Salmonella typhimurium
(plasmid pKM101) (fragment)
Length = 135
Score = 101 bits (250), Expect = 8e-21
Identities = 46/126 (36%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 218 LNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGH 277
++H V++ Y G+ ++ A+ +C+R+ P RI++TE+R D AW+++KA+ +GH
Sbjct: 3 VDHVVEAVYMMYGDAGKIG-PVSATDALRACMRLTPGRIIMTELRDDAAWDYLKALNTGH 61
Query: 278 PG-ISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIVLYYVHHKLREIY 336
PG + + HA A +AF++I LIK + G LD + I + ++ T+D+V++ K++EIY
Sbjct: 62 PGGVMSTHANSARDAFNRIGLLIKATPIGRMLDMSDIMRMLYSTIDVVVHMEKRKIKEIY 121
Query: 337 YDPEFK 342
+DPE+K
Sbjct: 122 FDPEYK 127
>gi|466380|gb|AAA17043.1| (U07618) TrbB [Plasmid R751] >gi|1572548
(U67194) TrbB [Enterobacter aerogenes]
Length = 320
Score = 98.7 bits (242), Expect = 7e-20
Identities = 87/296 (29%), Positives = 135/296 (45%), Gaps = 54/296 (18%)
Query: 17 RSSEMLAEYMEP-LRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLAT 75
R+ + L M P L A L+D EI +N ++W E R G + L + +
Sbjct: 14 RAKKKLERDMGPELLAALNDPKTVEIMLNADGKLWLE-RLGEPMKCIGTLRVAQAQAIIE 72
Query: 76 LIASYNGKSITANKPVLSAALP-GGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEA 134
IA Y+GK +T +KP+L LP G+R +PP T +I RK + TLD+
Sbjct: 73 TIAGYHGKEVTRSKPILEGELPLDGSRFAGQLPPVVPAPTFAI--RKKGVAIFTLDQYVE 130
Query: 135 EGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIG 194
G P L+A +++R ++++G TGSGKTT+
Sbjct: 131 RGIMTA-----------PQREALIAAVRAHR-------------NILVIGGTGSGKTTLV 166
Query: 195 KSITNCI----PTDERLVTVEDVHEM------FLNHHPNKVHLFYSRDGEGSLSINPKQA 244
+I N + PT ER+ +ED E+ ++ +H S+ +N
Sbjct: 167 NAIINEMVIQDPT-ERVFIIEDTGEIQCAAENYVQYHT-------------SIDVNMTAL 212
Query: 245 IASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHP-GISTAHAGGALEAFDQIVALI 299
+ + LRM+PDRIL+ E+RG EA + + A +GH G +T HA A D++ LI
Sbjct: 213 LKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLAMLI 268
>gi|2960083|emb|CAA17981.1| (AL022121) trbB [Mycobacterium
tuberculosis]
Length = 352
Score = 97.9 bits (240), Expect = 1e-19
Identities = 90/313 (28%), Positives = 140/313 (43%), Gaps = 43/313 (13%)
Query: 23 AEYMEPLRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNG 82
A +EPL L ++ V P VW + NG +R + S +LA +A G
Sbjct: 21 AGILEPL---LSADGTTDVLVTAPDSVWVDDGNGLRRSQIRFADESAVRRLAQRLALAAG 77
Query: 83 KSITANKPVLSAALPG------GARVQVVIPPACETRT-VSITIRKPSMVDKTLDELEAE 135
+ + +P + L G R+ V+PP T +S+ + +P+ D L L A
Sbjct: 78 RRLDDAQPWVDGQLTGIGVGGFAVRLHAVLPPVATQGTCLSLRVLRPATQD--LAALAAA 135
Query: 136 GAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGK 195
GA D P L+A + R L ++ G TG+GKTT+
Sbjct: 136 GAID------------PAAAALVADIVTAR------------LAFLVCGGTGAGKTTLLA 171
Query: 196 SITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDG-EGSLSINPKQAIASCLRMKPD 254
++ + DER+V VED E+ HP+ V L R EG + +Q + LRM+PD
Sbjct: 172 AMLGAVSPDERIVCVEDAAEL-APRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPD 230
Query: 255 RILLTEMRGDEAWEFVKAVGSGHP-GISTAHAGGALEAFDQIVALIKDSATGAHLDAAYI 313
RI++ E+RG E + + A+ +GH G T HA E ++ AL A G LD A +
Sbjct: 231 RIVVGEVRGAEVVDLLAALNTGHEGGAGTVHANNPGEVPARMEAL---GALGG-LDRAAL 286
Query: 314 KKRVFETVDIVLY 326
++ V ++L+
Sbjct: 287 HSQLAAAVQVLLH 299
>gi|2649960 (AE001059) type II secretion system protein (gspE-2)
[Archaeoglobus fulgidus]
Length = 511
Score = 97.1 bits (238), Expect = 2e-19
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 72 KLATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDE 131
++ + +GK I+ P++ A LP G+R+Q R S TIRK ++ T +
Sbjct: 179 RMVLRLTQRSGKHISIANPIVDATLPDGSRLQATFGTEVTPRGSSFTIRKFTIEPLTPID 238
Query: 132 LEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKT 191
L +G SG L +L LA++H + ++VG+T SGKT
Sbjct: 239 LIEKGTVP-------SGVL-----------------AYLWLAIEHKFSAIVVGETASGKT 274
Query: 192 TIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRM 251
T +I IP D ++V++ED E+ L +H N + +R G G I+ + + LR
Sbjct: 275 TTLNAIMMFIPPDAKVVSIEDTREIKL-YHENWI-AEVTRTGMGEGEIDMYDLLRAALRQ 332
Query: 252 KPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHAG 286
+PD I++ E+RG EA +A+ +GH ST HAG
Sbjct: 333 RPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAG 367
>gi|5105588|dbj|BAA80901.1| (AP000062) 579aa long hypothetical
protein [Aeropyrum pernix]
Length = 579
Score = 96.0 bits (235), Expect = 4e-19
Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 34/263 (12%)
Query: 28 PLRAFLDDTSLNEICVNRPSEVWTEGR-----NGWQRFDVPCLTFSHCCKLATLIASYNG 82
PL FL D L +I N V+ + RF+ KL I G
Sbjct: 191 PLEPFLRDPYLEDISCNGVGPVYVVHKMFRSLESSVRFETEGELDDFILKLGEKI----G 246
Query: 83 KSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVE 142
K I+ +PV+ A LP G+R+ +V + + TIRK S + ++ +L G FD
Sbjct: 247 KPISHARPVVDATLPDGSRINIVFGSDVSLKGSNFTIRKVSKIPISVTQLIKWGTFDA-- 304
Query: 143 NVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
RI ++ + ++ G+++ I G+T SGKTT +I+ I
Sbjct: 305 ----------------------RIAAYMWMMLEEGMSVFICGETASGKTTSLNAISVFIR 342
Query: 203 TDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMR 262
D ++VT+ED E+ L HPN G+ S+ + + LR +P+ I++ E+R
Sbjct: 343 PDAKIVTIEDTAEVVL-PHPNWTRELTRNTGKPETSVTMFDLLRAALRQRPNYIIVGEIR 401
Query: 263 GDEAWEFVKAVGSGHPGISTAHA 285
G E +A+ +GHP ++T HA
Sbjct: 402 GAEGNIAFQAMQTGHPVMATFHA 424
>gi|5105908|dbj|BAA81220.1| (AP000063) 476aa long hypothetical
protein [Aeropyrum pernix]
Length = 476
Score = 86.2 bits (210), Expect = 4e-16
Identities = 75/265 (28%), Positives = 119/265 (44%), Gaps = 33/265 (12%)
Query: 28 PLRAFLDDTSLNEIC---VNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKS 84
P+ + D L +I V RP VW + + ++ + L+A GK
Sbjct: 84 PIDVLMKDEYLEDISCDGVGRPVYVWHQEYESIKS-NIVFEDERQLDHMILLLAHRAGKH 142
Query: 85 ITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENV 144
I+ PVL A LP G RV T+ + TIRK ++ +L
Sbjct: 143 ISVAFPVLDAVLPEGHRVAATFRREVSTQGSTFTIRKFKATPLSIVDLII---------- 192
Query: 145 DASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD 204
GT+ P I +L L ++ + +I+G TGSGKTT +I + +
Sbjct: 193 --GGTISP------------DIAAYLWLMAEYRMPGIIMGVTGSGKTTTLNAIATLLRPN 238
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLF----YSRDGEGSLSINPKQAIASCLRMKPDRILLTE 260
++VT+ED E+ L H N V L +S GE I+ + LR +PD I++ E
Sbjct: 239 VKIVTIEDTPEIKLPHE-NWVQLVSRPSFSVTGESRGEISLYDLVRVSLRYRPDVIIVGE 297
Query: 261 MRGDEAWEFVKAVGSGHPGISTAHA 285
+RG+EA+ +A+ +GH G++T H+
Sbjct: 298 VRGEEAYVLFQALATGHGGLTTIHS 322
>gi|2622833 (AE000927) secretory protein kinase [Methanobacterium
thermoautotrophicum]
Length = 526
Score = 86.2 bits (210), Expect = 4e-16
Identities = 68/236 (28%), Positives = 109/236 (45%), Gaps = 45/236 (19%)
Query: 73 LATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDEL 132
+ LIA + I P+L A LP G+RV IPP + ++TIRK T+
Sbjct: 193 IVDLIARQVNRRIDQQTPILDARLPDGSRVNATIPPVSPDGS-TLTIRKFRKDPFTV--- 248
Query: 133 EAEGAFDQVENVDASGTLHPYEVELLALKK-SNRIKEFLKLAMQHGLTL-----VIVGKT 186
V+L+ K S+ + FL + GL + ++ G T
Sbjct: 249 ----------------------VDLINFKTMSSHLAAFLWVCTD-GLGVKPCNAIVAGGT 285
Query: 187 GSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSR------DGEGSLSIN 240
GSGKTT +++ +P ER++T+ED E+ L H H+ +G+G L ++
Sbjct: 286 GSGKTTTLNTVSAFVPPTERIITIEDTLELQLPH----THVLRMETRPPNIEGKGELDMD 341
Query: 241 PKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQIV 296
+ + LR +PDR+++ E+RG EA A+ +GH G T HA A E +++
Sbjct: 342 T--LVKNSLRQRPDRVIVGEVRGSEAITLFTALNTGHSGFGTLHANTARETITRLI 395
>gi|3256963|dbj|BAA29646| (AP000002) 537aa long hypothetical protein
[Pyrococcus horikoshii]
Length = 537
Score = 85.8 bits (209), Expect = 5e-16
Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 37/258 (14%)
Query: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
G+ ++ P++ LP G+R+ ++ P + S TIRK + ++ +L A G
Sbjct: 213 GRPVSDRNPIVDGTLPDGSRINIIYSPDISLKGPSATIRKFAATPLSITQLIAWGTM--- 269
Query: 142 ENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI 201
S I +L LA+++G+++ + G+T SGKTT +I I
Sbjct: 270 ---------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI 308
Query: 202 PTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEM 261
++ T ED E+ + HP L G + + + LR +P+ I++ E+
Sbjct: 309 KPGSKVYTAEDTPEVQV-PHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEI 367
Query: 262 RGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQI--------VALIKDSATGAHLDAAYI 313
RG E +A+ +GHP +ST HAG + + + I + A Y+
Sbjct: 368 RGAEGNIAFQAMQTGHPVMSTFHAGDVKKMIQRFTGSPINVPITFIDNLNIALFQQAVYV 427
Query: 314 K----KRVFETVDIVLYY 327
K +RV V+I YY
Sbjct: 428 KGKFLRRVITVVEIEGYY 445
>gi|3257058|dbj|BAA29741| (AP000003) 1136aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 1136
Score = 85.8 bits (209), Expect = 5e-16
Identities = 84/287 (29%), Positives = 131/287 (45%), Gaps = 35/287 (12%)
Query: 4 KMTNSTAQKQDDGRS---SEMLAEYM---EPLRAFLDDTSLNEICV---NRPSEVWTEGR 54
KM A +GR SE++ + M L + D +L EI V NRP VW R
Sbjct: 189 KMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGTNRPVYVWHR-R 247
Query: 55 NGWQRFDVPCLTFSHCCKLATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRT 114
G + ++ + + IA G+ I P+L A LP G+RV +PP
Sbjct: 248 FGMCKTNITFTSEREILTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPI-SLDG 306
Query: 115 VSITIRKPSMVDKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAM 174
+ITIRK T+ +L N + + L V+ L +K +N
Sbjct: 307 PTITIRKFKKDPLTIIDLIKFRTL----NSEVAAFLWLL-VDGLGVKPAN---------- 351
Query: 175 QHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFL--NHHPNKVHLFYSRD 232
+++ G TGSGKTT S+ IP ER++++ED E+ L H + +
Sbjct: 352 -----ILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVE 406
Query: 233 GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPG 279
G+G ++++ + + LRM+PDRI++ E+RG EA A+ +GH G
Sbjct: 407 GKGEITMD--DLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDG 451
>gi|4894275|gb|AAD32363.1|AAD32363 (AF065404) pXO1-59 [Bacillus
anthracis]
Length = 477
Score = 85.4 bits (208), Expect = 6e-16
Identities = 58/212 (27%), Positives = 112/212 (52%), Gaps = 17/212 (8%)
Query: 125 VDKTLDELEAEGAFDQV-ENVDASGTLHPYEVELLALKKSNRIK-EFLKLAMQHGLTLVI 182
++ LDEL G + +N D L E +L+ +++++ +FL A++ + +++
Sbjct: 184 INIALDELGGLGTTITIRKNADH---LRASEERMLSTNQASKVMLDFLAAAVKSKMNILV 240
Query: 183 VGKTGSGKTTIGKSITNCIPTD---ERLVTVED-----VHEMFLNHHPNKVHLFYSRDGE 234
G TG+GK+ K + + IP ER + VED +H +F HH + S E
Sbjct: 241 AGATGTGKSEFMKYLASHIPKGKKKERTLVVEDNPELYLHRIFPEHHFVPMQCRASEVEE 300
Query: 235 GSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQ 294
++ + + + + LR P R+++ E RG EA + + +GHPG ++ HA A EA +
Sbjct: 301 NAIDFD--RLLTNALRQGPKRLIVGESRGKEALKMINFFQTGHPGFTSVHARSAKEAVRR 358
Query: 295 IVALIKDSATGAHLDAAYIKKRVFETVDIVLY 326
++ + S GA++DA Y+ + + +T D++++
Sbjct: 359 LMLMCLQS--GANIDAQYLYELISQTFDVIVF 388
>gi|5458905|emb|CAB50392.1| (AJ248287) PUTATIVE FLAGELLA-RELATED
PROTEIN I [Pyrococcus abyssi]
Length = 537
Score = 84.7 bits (206), Expect = 1e-15
Identities = 64/258 (24%), Positives = 112/258 (42%), Gaps = 37/258 (14%)
Query: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
G+ ++ P++ LP G+R+ ++ P + S TIRK + ++ +L A G
Sbjct: 213 GRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTM--- 269
Query: 142 ENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI 201
S I +L LA+++G+++ + G+T SGKTT +I I
Sbjct: 270 ---------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI 308
Query: 202 PTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEM 261
++ T ED E+ + HP L G + + + LR +P+ I++ E+
Sbjct: 309 KPGSKVFTAEDTPEVQV-PHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEI 367
Query: 262 RGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQI--------VALIKDSATGAHLDAAYI 313
RG E +A+ +GHP ++T HAG + + + I + A Y+
Sbjct: 368 RGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYV 427
Query: 314 K----KRVFETVDIVLYY 327
K +RV V+I YY
Sbjct: 428 KGKFLRRVINVVEIEGYY 445
>gi|348623|pir||C44020 TrbB - plasmid RK2 >gi|152556 (M93696) trbB
[Plasmid RP4] >gi|581214|emb|CAA42597| (X59971) KilB
protein [Escherichia coli]
Length = 319
Score = 84.3 bits (205), Expect = 1e-15
Identities = 78/276 (28%), Positives = 122/276 (43%), Gaps = 39/276 (14%)
Query: 29 LRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITAN 88
L A L+D E+ +N +VW E R+ + + S + +A ++GK +T +
Sbjct: 26 LLAALNDPKTVEVMLNADGKVWHERLGEPMRY-ICDMRPSQSQAIIETVAGFHGKEVTRH 84
Query: 89 KPVLSAALP-GGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDAS 147
P+L P G+R +PP T +I RK ++ TL++ G
Sbjct: 85 SPILEGEFPLDGSRFAGQLPPVVAAPTFAI--RKRAVAIFTLEQYVEAGIM--------- 133
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITN---CIPTD 204
T YEV +K A+ ++++G TGSGKTT+ +I N
Sbjct: 134 -TREQYEV--------------IKSAVAAHRNILVIGGTGSGKTTLVNAIINEMVAFNPS 178
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ER+V +ED E+ N V S D +L + + LRM+PDRIL+ E+RG
Sbjct: 179 ERVVIIEDTGEIQCAAE-NAVQYHTSIDVSMTLLLK------TTLRMRPDRILVGEVRGP 231
Query: 265 EAWEFVKAVGSGHP-GISTAHAGGALEAFDQIVALI 299
EA + + A +GH G +T HA ++ LI
Sbjct: 232 EALDLLMAWNTGHEGGAATLHANNPKAGLSRLAMLI 267
>gi|294707 (L05600) klbA [Plasmid RK2]
Length = 298
Score = 84.3 bits (205), Expect = 1e-15
Identities = 78/276 (28%), Positives = 122/276 (43%), Gaps = 39/276 (14%)
Query: 29 LRAFLDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITAN 88
L A L+D E+ +N +VW E R+ + + S + +A ++GK +T +
Sbjct: 5 LLAALNDPKTVEVMLNADGKVWHERLGEPMRY-ICDMRPSQSQAIIETVAGFHGKEVTRH 63
Query: 89 KPVLSAALP-GGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDAS 147
P+L P G+R +PP T +I RK ++ TL++ G
Sbjct: 64 SPILEGEFPLDGSRFAGQLPPVVAAPTFAI--RKRAVAIFTLEQYVEAGIM--------- 112
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITN---CIPTD 204
T YEV +K A+ ++++G TGSGKTT+ +I N
Sbjct: 113 -TREQYEV--------------IKSAVAAHRNILVIGGTGSGKTTLVNAIINEMVAFNPS 157
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
ER+V +ED E+ N V S D +L + + LRM+PDRIL+ E+RG
Sbjct: 158 ERVVIIEDTGEIQCAAE-NAVQYHTSIDVSMTLLLK------TTLRMRPDRILVGEVRGP 210
Query: 265 EAWEFVKAVGSGHP-GISTAHAGGALEAFDQIVALI 299
EA + + A +GH G +T HA ++ LI
Sbjct: 211 EALDLLMAWNTGHEGGAATLHANNPKAGLSRLAMLI 246
>gi|5458808|emb|CAB50295.1| (AJ248287) SECRETORY PROTEIN KINASE
[Pyrococcus abyssi]
Length = 814
Score = 83.9 bits (204), Expect = 2e-15
Identities = 83/287 (28%), Positives = 130/287 (44%), Gaps = 35/287 (12%)
Query: 4 KMTNSTAQKQDDGRS---SEMLAEYM---EPLRAFLDDTSLNEICV---NRPSEVWTEGR 54
KM A +GR SE++ + M L + D +L EI V +RP VW R
Sbjct: 191 KMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHR-R 249
Query: 55 NGWQRFDVPCLTFSHCCKLATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRT 114
G + ++ T + IA G+ I P+L A LP G+RV +PP
Sbjct: 250 FGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPI-SLDG 308
Query: 115 VSITIRKPSMVDKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAM 174
++TIRK T+ +L D + L V+ L +K +N
Sbjct: 309 PTLTIRKFKKDPLTIIDLIKFRTLSS----DVAAFLWLL-VDGLGVKPAN---------- 353
Query: 175 QHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFL--NHHPNKVHLFYSRD 232
+++ G TGSGKTT S+ IP ER++++ED E+ L H + +
Sbjct: 354 -----ILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVE 408
Query: 233 GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPG 279
G+G ++++ + + LRM+PDRI++ E+RG EA A+ +GH G
Sbjct: 409 GKGEITMD--DLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDG 453
>gi|4155921 (AE001554) DNA transfer protein [Helicobacter pylori
J99]
Length = 304
Score = 78.8 bits (191), Expect = 6e-14
Identities = 77/317 (24%), Positives = 131/317 (41%), Gaps = 46/317 (14%)
Query: 35 DTSLNEICVNRPSEVW------TEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITAN 88
++ + E+ +N E+W T + G FD L + +AS+ G
Sbjct: 22 ESGITELIINTEQELWLYKINNTREKRGHVLFDKAFLL-----RFCEQLASFRGLFFDEE 76
Query: 89 KPVLSAALPGGA-RVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDAS 147
P L+ ++P RV +++ IR P
Sbjct: 77 HPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPR------------------------ 112
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
L P +E K SN E LK G ++I G+T SGKT++ ++ +C+ DER+
Sbjct: 113 --LKPLSLEDFTFKVSN--PESLKNLALKGHNILISGETSSGKTSLLNALLDCVNKDERV 168
Query: 208 VTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAW 267
V+VED E+ L N V L + + + N + A+ +R+ PDR+++ E+ A
Sbjct: 169 VSVEDSQELDLKAFSNCVGLLVGK--QENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAA 226
Query: 268 EFVKAVGSGHPG-ISTAHAGGA---LEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
F++ +GH G +ST HA A LEA +++ + L AY K + V +
Sbjct: 227 LFLRLGNTGHKGMLSTIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFKSAIDVIVHV 286
Query: 324 VLYYVHHKLREIYYDPE 340
++ E+ + E
Sbjct: 287 NKINNERQIAEVLWTKE 303
>gi|1707774|emb|CAA69572| (Y08257) virB homolog [Sulfolobus
solfataricus]
Length = 483
Score = 77.6 bits (188), Expect = 1e-13
Identities = 66/236 (27%), Positives = 105/236 (43%), Gaps = 26/236 (11%)
Query: 69 HCCKLATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKT 128
H K+ +A+ K ++ KP L +LP G RV + +R VS+ S D
Sbjct: 146 HVLKVIEKLANKADKPVSIAKPYLEFSLPEGHRVAATV-----SREVSLP---GSTFDIR 197
Query: 129 LDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGS 188
L+ ++N S + Y LL K +I+G TGS
Sbjct: 198 KFPLKPISPISLIKNESISSLMLAYIWFLLDYKPF----------------FLIIGSTGS 241
Query: 189 GKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASC 248
GKTT+ SI + I +++T+ED E+ + H N + F + ++
Sbjct: 242 GKTTLLNSILSMINPFFKVITIEDTPEINIIHD-NWIRFFARQSISSQFEVSLMDLAKLS 300
Query: 249 LRMKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQIVALI-KDSA 303
LR +PD +++ E+RG E V A SGH ++T HAG EA ++++L+ KD A
Sbjct: 301 LRYRPDYLVIGEIRGKEIEALVHASASGHGSLATFHAGNPHEALTRLLSLLNKDVA 356
>gi|2314595|gb|AAD08463.1| (AE000642) conjugative transfer regulon
protein (trbB) [Helicobacter pylori 26695]
Length = 304
Score = 76.9 bits (186), Expect = 2e-13
Identities = 74/317 (23%), Positives = 135/317 (42%), Gaps = 46/317 (14%)
Query: 35 DTSLNEICVNRPSEVW------TEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITAN 88
++ + E+ +N E+W T + G FD L + +AS+ G
Sbjct: 22 ESGITELMINTEQELWLYKVNNTREKRGHALFDKAFLL-----RFCEQLASFRGLFFDEE 76
Query: 89 KPVLSAALPGGA-RVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDAS 147
P L+ ++P RV +++ IR P + +L++ + +
Sbjct: 77 HPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLEDFTFKAS---------- 126
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
P ++ LALK N ++I G+T SGKT++ ++ +C+ DER+
Sbjct: 127 ---DPKSLKDLALKGHN---------------ILISGETSSGKTSLLNALLDCVNKDERV 168
Query: 208 VTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAW 267
V+VED E+ L N V L + + + N + A+ +R+ PDR+++ E+ A
Sbjct: 169 VSVEDSQELDLKAFSNCVGLLVGK--QENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAA 226
Query: 268 EFVKAVGSGHPG-ISTAHAGGA---LEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
F++ +GH G +ST HA A LEA +++ + L AY K + V +
Sbjct: 227 LFLRLGNTGHKGMLSTIHANSAQNTLEALSLNLSMRYMYSLDKDLMRAYFKSAIDVIVHV 286
Query: 324 VLYYVHHKLREIYYDPE 340
++ E+ + E
Sbjct: 287 NRINNERQIAEVLWTKE 303
>gi|2731648|gb|AAB93500.1| (U75584) export type III nucleotide
binding protein [Helicobacter pylori]
Length = 304
Score = 76.9 bits (186), Expect = 2e-13
Identities = 74/317 (23%), Positives = 135/317 (42%), Gaps = 46/317 (14%)
Query: 35 DTSLNEICVNRPSEVW------TEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITAN 88
++ + E+ +N E+W T + G FD L + +AS+ G
Sbjct: 22 ESGITELMINTEQELWLYKINNTREKRGHALFDKAFLL-----RFCEQLASFRGLFFDEE 76
Query: 89 KPVLSAALPGGA-RVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDAS 147
P L+ ++P RV +++ IR P + +L++ + +
Sbjct: 77 HPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLEDFTFKAS---------- 126
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
P ++ LALK N ++I G+T SGKT++ ++ +C+ DER+
Sbjct: 127 ---DPKGLKDLALKGHN---------------ILISGETSSGKTSLLNALLDCVNKDERV 168
Query: 208 VTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAW 267
V+VED E+ L N V L + + + N + A+ +R+ PDR+++ E+ A
Sbjct: 169 VSVEDSQELDLKAFNNCVGLLVGK--QENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAA 226
Query: 268 EFVKAVGSGHPG-ISTAHAGGA---LEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDI 323
F++ +GH G +ST HA A LEA +++ + L AY K + V +
Sbjct: 227 LFLRLGNTGHKGMLSTIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFKSAIDVIVHV 286
Query: 324 VLYYVHHKLREIYYDPE 340
++ E+ + E
Sbjct: 287 NRINNERQIAEVLWTKE 303
>gi|2833586|sp|Q58191|Y781_METJA HYPOTHETICAL PROTEIN MJ0781
>gi|2129090|pir||E64397 klbA homolog - Methanococcus
jannaschii >gi|1591480 (U67522) type II secretion system
protein [Methanococcus jannaschii]
Length = 721
Score = 75.7 bits (183), Expect = 5e-13
Identities = 61/204 (29%), Positives = 93/204 (44%), Gaps = 21/204 (10%)
Query: 77 IASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEG 136
IA+ + I + P+L A LP G+RV ++TIRK S T+ +L G
Sbjct: 221 IANLVNRPIDSRVPMLDAFLPDGSRVNATTADIT-MNGATLTIRKFSKNPLTVIDLINFG 279
Query: 137 AFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKS 196
D +D + L K +N + I G TGSGKTT+
Sbjct: 280 TLD----IDTAAFLWQAVEGYFGAKPANTL---------------IAGGTGSGKTTLLNV 320
Query: 197 ITNCIPTDERLVTVEDVHEMFLNH-HPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDR 255
++ +ER++T+ED E+ + H H K+ +R G + I + LRM+PDR
Sbjct: 321 LSLFSMYNERIITIEDTPELQIPHKHVIKMVTRPARPGMPEYEVTMDDLIKNALRMRPDR 380
Query: 256 ILLTEMRGDEAWEFVKAVGSGHPG 279
I + E+RG EA + A+ +GH G
Sbjct: 381 IFVGEVRGKEAHSLLVAMNTGHDG 404
>gi|2649599 (AE001035) type II secretion system protein (gspE-3)
[Archaeoglobus fulgidus]
Length = 569
Score = 74.9 bits (181), Expect = 9e-13
Identities = 58/215 (26%), Positives = 100/215 (45%), Gaps = 36/215 (16%)
Query: 77 IASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEG 136
+A GK I+ +P++ A +P G+R+Q+ + + TIRK T
Sbjct: 240 LAQKCGKHISIAEPMVDATMPDGSRIQMTLGREVTDHGSTFTIRKFREEPVT-------- 291
Query: 137 AFDQVENVDASGTLHPYEVELLALKK-SNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGK 195
++L+A K S+ +L L +++ +L+ G T SGKTT
Sbjct: 292 -----------------PIDLIAWKTFSSEQMAYLWLCIENKKSLIFAGGTASGKTTSMN 334
Query: 196 SITNCIPTDERLVTVEDVHEMFLNHHPNKV-----HLFYSRDGEGSLSINPKQAIASCLR 250
+I+ IP ++VT+ED E+ L H N + F+ G +++ + + LR
Sbjct: 335 AISLFIPRRSKIVTIEDTRELMLPHE-NWIPAVTRDAFHGEKG----AVDMYDLLRAALR 389
Query: 251 MKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHA 285
+P+ I++ E+RG EA +A+ +GH ST HA
Sbjct: 390 QRPEYIIVGEVRGREALTLFQAMATGHTTYSTLHA 424
>gi|2650297 (AE001081) type II secretion system protein (gspE-1)
[Archaeoglobus fulgidus]
Length = 595
Score = 74.9 bits (181), Expect = 9e-13
Identities = 58/215 (26%), Positives = 100/215 (45%), Gaps = 36/215 (16%)
Query: 77 IASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEG 136
+A GK I+ +P++ A +P G+R+Q+ + + TIRK T
Sbjct: 265 LAQKCGKHISIAEPMVDATMPDGSRIQMTLGREVTDHGSTFTIRKFREEPVT-------- 316
Query: 137 AFDQVENVDASGTLHPYEVELLALKK-SNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGK 195
++L+A K S+ +L L +++ +L+ G T SGKTT
Sbjct: 317 -----------------PIDLIAWKTFSSEQMAYLWLCIENKKSLIFAGGTASGKTTSMN 359
Query: 196 SITNCIPTDERLVTVEDVHEMFLNHHPNKV-----HLFYSRDGEGSLSINPKQAIASCLR 250
+I+ IP ++VT+ED E+ L H N + F+ G +++ + + LR
Sbjct: 360 AISLFIPRRSKIVTIEDTRELMLPHE-NWIPAVTRDAFHGEKG----AVDMYDLLRAALR 414
Query: 251 MKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHA 285
+P+ I++ E+RG EA +A+ +GH ST HA
Sbjct: 415 QRPEYIIVGEVRGREALTLFQAMATGHTTYSTLHA 449
>gi|2495101|sp|Q58310|Y900_METJA HYPOTHETICAL PROTEIN MJ0900
>gi|2128565|pir||D64412 hypothetical protein MJ0900 -
Methanococcus jannaschii >gi|1591575 (U67533) type II
secretion system protein [Methanococcus jannaschii]
Length = 551
Score = 74.9 bits (181), Expect = 9e-13
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 25/214 (11%)
Query: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
G+ ++ P++ LP G+R+ ++ + S TIRK + V ++ +L + G F
Sbjct: 227 GRPVSDANPIVDGTLPDGSRINIIYSTDVSPKGPSFTIRKFTDVPISVTQLISWGTF--- 283
Query: 142 ENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI 201
S + +L L +++G+++ I G+T SGKTT +I I
Sbjct: 284 ---------------------STEVAAYLWLCLEYGMSIFICGETASGKTTTLNAILPFI 322
Query: 202 PTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEM 261
+ ++ + ED E+ HP L G + + + LR +P+ I++ E+
Sbjct: 323 KPNSKIFSCEDTPEV-KPPHPVWQQLVTRERGPEESRVTLFDLLRAALRSRPNYIIVGEI 381
Query: 262 RGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQI 295
R EA +A+ +GHP +ST HA + ++
Sbjct: 382 RSVEAAVAFQAMQTGHPVLSTFHAANVRKMIQRL 415
>gi|2649537 (AE001030) type II secretion system protein (gspE-4)
[Archaeoglobus fulgidus]
Length = 628
Score = 74.9 bits (181), Expect = 9e-13
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 30/220 (13%)
Query: 72 KLATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDE 131
K +A GK +T P++ A LP G+R+ +V + TIRK + ++ +
Sbjct: 286 KFIIRLAERIGKPVTYKDPIVDATLPDGSRINIVFGNDISKNGSNFTIRKFNETPFSVLQ 345
Query: 132 LEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKT 191
L G+ D + I +L L + G++ I G+T SGKT
Sbjct: 346 LIEFGSLDYM------------------------IAGYLWLLISEGMSGFICGETASGKT 381
Query: 192 TIGKSITNCIPTDERLVTVEDVHEMFLNHH--PNKVHLFYSRDG----EGSLSINPKQAI 245
T+ +IT I + ++V++ED E+ + H +V +R G G + +
Sbjct: 382 TLLNAITAFIRPEAKVVSIEDTPELQVPHKNWTREVTRGSTRAGGIGEGGGSDVTMFDLL 441
Query: 246 ASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHA 285
+ LR +P+ IL+ E+RG E +A+ +GHP +ST HA
Sbjct: 442 KAALRQRPNYILVGEIRGVEGNIAFQAMQTGHPVMSTFHA 481
>gi|1730018|sp|P54907|TRBB_AGRT6 CONJUGAL TRANSFER PROTEIN TRBB
>gi|1163216 (U43675) TrbB [Agrobacterium tumefaciens]
Length = 323
Score = 70.6 bits (170), Expect = 2e-11
Identities = 74/298 (24%), Positives = 130/298 (42%), Gaps = 45/298 (15%)
Query: 33 LDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITANKPVL 92
LDD ++ EI +N ++ E R G +T + + +A +P++
Sbjct: 26 LDDATVVEIMLNPDGRLFIE-RLGHGVVAAGAMTPAAAEVVIGSVAHALQSEADDERPII 84
Query: 93 SAALP-GGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDASGTLH 151
S LP GG R + ++PP +I R ++ LD+ + +
Sbjct: 85 SGELPIGGHRFEGLLPPIVSGPAFTIRRRASRLIP--LDDYVTSKVMTEAQ--------- 133
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPT---DERLV 208
++ A+ + +VI G TGSGKTT+ +I I T D+RLV
Sbjct: 134 ---------------ASAIRSAIDSRMNIVISGGTGSGKTTLANAIIAEIVTAAPDDRLV 178
Query: 209 TVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWE 268
+ED E+ N V L S +++ + + S +R++PDRI++ E+R A
Sbjct: 179 ILEDTAEIQCAAE-NAVSLHTSD------TVDMARLLKSTMRLRPDRIIVGEVRDGAALT 231
Query: 269 FVKAVGSGHP-GISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIVL 325
+KA +GHP G++T H+ AL A ++ L A +++ + E VD+++
Sbjct: 232 LLKAWNTGHPGGVTTIHSNTALSALRRLEQLT------AEASQQLMQEVIGEAVDLIV 283
>gi|2495100|sp|P55395|TRBB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN
TRBB >gi|2182338 (AE000068) TrbB [Rhizobium sp. NGR234]
Length = 325
Score = 67.5 bits (162), Expect = 2e-10
Identities = 65/276 (23%), Positives = 125/276 (44%), Gaps = 39/276 (14%)
Query: 33 LDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITANKPVL 92
LDD+++ EI +N +++ E R G ++ + + +A + +P++
Sbjct: 26 LDDSNVVEIMLNPDGKLFIE-RLGHGVAPAGEMSSAAAEMVIGTVAHALQSEVDTEQPII 84
Query: 93 SAALP-GGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDASGTLH 151
S LP GG R + ++PP S TIR+ + LD+ G + +
Sbjct: 85 SGELPIGGHRFEGLLPPV--VAKPSFTIRRRASRLIPLDDYVRSGVMTEAQAAT------ 136
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI---PTDERLV 208
++ A+ L ++I G T SGKTT+ ++ + I ++RLV
Sbjct: 137 ------------------IRSAIDSRLNIIISGGTASGKTTLANAVIHEIVRSAPEDRLV 178
Query: 209 TVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWE 268
+ED E + + L + D +++ + + S +R++PDRI++ E+R A
Sbjct: 179 ILEDTAE--IQCAADNAVLLRTSD-----TVDMARLLKSTMRLRPDRIVVGEVRDGAALT 231
Query: 269 FVKAVGSGHP-GISTAHAGGALEAFDQIVALIKDSA 303
+KA +GHP G++T H+ A A ++ L +++
Sbjct: 232 LLKAWNTGHPGGVATIHSNTATSALRRLEQLTAEAS 267
>gi|2104781 (U97040) putative flagella-related protein I
[Methanococcus voltae]
Length = 552
Score = 66.7 bits (160), Expect = 3e-10
Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 29/216 (13%)
Query: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
G+ ++ P++ ++P G+R+ ++ + S TIRK S ++ +
Sbjct: 228 GRPVSDATPIVDGSMPDGSRINILYSNDVSLKGPSFTIRKFSDTPTSITQ---------- 277
Query: 142 ENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI 201
+ + GT+ P I +L L +++G+++ + G+T SGKTT +I I
Sbjct: 278 --IISWGTMSP------------EIAAYLWLCLEYGMSIFVCGETASGKTTTLNAIMPFI 323
Query: 202 PTDERLVTVEDVHEMFLNHHPNKV--HLFYSRDGEGSLSINPKQAIASCLRMKPDRILLT 259
++ + ED E+ PN V L G + + + LR +P+ I++
Sbjct: 324 KPKSKVFSCEDTAEV---KPPNPVWQQLLTRERGPEESRVTLFDLLRAALRSRPNYIIVG 380
Query: 260 EMRGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQI 295
E+R E +A+ +GHP +ST HA + ++
Sbjct: 381 EIRSVEGAVAFQAMQTGHPVLSTFHAANVRKMIQRL 416
>gi|2982705|dbj|BAA25274| (AB006858) trbB [Agrobacterium
tumefaciens] >gi|3766175 (AF057718) TrbB [Agrobacterium
tumefaciens] >gi|6498190|dbj|BAA87642.1| (AB016260)
Probable trbB gene [Agrobacterium tumefaciens]
Length = 323
Score = 65.2 bits (156), Expect = 8e-10
Identities = 72/298 (24%), Positives = 131/298 (43%), Gaps = 45/298 (15%)
Query: 33 LDDTSLNEICVNRPSEVWTEGRNGWQRFDVPCLTFSHCCKLATLIASYNGKSITANKPVL 92
LDD ++ EI +N +++ E R G L+ + + +A +P++
Sbjct: 26 LDDATVVEIMLNPDGKLFIE-RLGHGVAPAGLLSPAAAEVIIGSVAHALQSEADDEQPII 84
Query: 93 SAALP-GGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDASGTLH 151
S LP GG R + ++PP + +I R ++ LD+ +
Sbjct: 85 SGELPIGGHRFEGLLPPVVSGPSFTIRRRASRLIP--LDDYVKHKIMTAAQ--------- 133
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPT---DERLV 208
L+ A+ + +VI G TGSGKTT+ ++ I D+R+V
Sbjct: 134 ---------------VSVLRSAIASRMNIVISGGTGSGKTTLANAVIAEIVANAPDDRIV 178
Query: 209 TVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWE 268
+ED E+ N V L S +I+ + + S +R++PDRI++ E+R A
Sbjct: 179 ILEDTAEIQCAAE-NAVALHTSD------TIDMARLLKSTMRLRPDRIIVGEVRDGAALT 231
Query: 269 FVKAVGSGHP-GISTAHAGGALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIVL 325
+KA +GHP G++T H+ A+ A ++ L A + +++ + E VD+++
Sbjct: 232 LLKAWNTGHPGGVTTIHSNTAMSALRRLEQLT------AEVSQQPMQEVIGEAVDLIV 283
>gi|5104356|dbj|BAA79671.1| (AP000060) 474aa long hypothetical Vir
B11 [Aeropyrum pernix]
Length = 474
Score = 64.8 bits (155), Expect = 1e-09
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Query: 73 LATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDEL 132
LA +A G+S++ +P+ G RV V S IRK T+ +L
Sbjct: 150 LALQLARKAGRSLSLAQPLAEGLTGEGHRVAVTFSREVSRFGSSFVIRKYPEKPVTMADL 209
Query: 133 EAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT 192
A S L P + +L L ++ +V+ G GSGKTT
Sbjct: 210 VA------------SRVLTPLQAA------------YLWLLVESQQFIVVSGPMGSGKTT 245
Query: 193 IGKSITNCIPTDERLVTVEDVHEMFL-NHHPNKVHLFYSRDGEGSLSINPKQAIASCLRM 251
+ +++ IP R++T+ED E+ L N H + + GE + ++ + + LR
Sbjct: 246 LLQALAGLIPPFYRVITIEDTPEIRLYNRHWDSLVTRPPLPGESMVEVDLEALLRFALRR 305
Query: 252 KPDRILLTEMRGDEAWEFVKAVGSGHPGISTAH 284
+ + I++ E+RG EA +A SGH ++T H
Sbjct: 306 RAEYIIVGEVRGREARLLAQAAASGHGSMTTMH 338
>gi|6470176|gb|AAF13630.1|AF188935_28 (AF188935) pXO2-25 [Bacillus
anthracis]
Length = 443
Score = 64.8 bits (155), Expect = 1e-09
Identities = 39/135 (28%), Positives = 72/135 (52%), Gaps = 3/135 (2%)
Query: 166 IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKV 225
I +F K+ M+ ++I G+TG+GKT + K + + + D + + +EDV E +
Sbjct: 201 IYDFFKVVMESRNNILISGETGTGKTEVLKLLFSFVRFDHKAIMIEDVPETHVKSLFPDK 260
Query: 226 HLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHA 285
+F G G + I + LR P I+++E+RG E +E ++AV SGH +++ H+
Sbjct: 261 DVFSWLTGNG---VTVTDEIVAALRNNPRWIMISELRGKETYEMIQAVLSGHHVVTSLHS 317
Query: 286 GGALEAFDQIVALIK 300
A + ++V + K
Sbjct: 318 VDAETSPKRLVNMSK 332
>gi|2495102|sp|Q58683|YC87_METJA HYPOTHETICAL PROTEIN MJ1287
>gi|2128765|pir||F64460 hypothetical protein MJ1287 -
Methanococcus jannaschii >gi|1591924 (U67569) type II
secretion system protein, putative [Methanococcus
jannaschii]
Length = 270
Score = 63.6 bits (152), Expect = 2e-09
Identities = 34/117 (29%), Positives = 64/117 (54%)
Query: 169 FLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLF 228
+L L +++ ++++ G+ +GKTT+ + + IP ++V++ED E+ L H
Sbjct: 18 YLWLLIEYKNSIMVAGEVATGKTTLLNAFSLFIPPQMKIVSIEDTPEIRLYHENWIAGTT 77
Query: 229 YSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPGISTAHA 285
S G I + + LR +PD +++ E+RG+EA +A+ +GH +ST HA
Sbjct: 78 RSGFGGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILFQAITTGHLALSTIHA 134
>gi|6459748|gb|AAF11513.1|AE002034_6 (AE002034) twitching mobility
protein [Deinococcus radiodurans]
Length = 420
Score = 62.1 bits (148), Expect = 7e-09
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 177 GLTLVIVGKTGSGKTTIGKSITNCIPTDERL--VTVEDVHEMFLNHHPNKVHLFYSRDGE 234
GL LV G TGSGK+T S+ + I T ++L +T+ED E HPNK + R+
Sbjct: 130 GLVLV-TGPTGSGKSTTLASMIDHINTTKKLHILTIEDPIEFM---HPNKASIINQRE-V 184
Query: 235 GSLSINPKQAIASCLRMKPDRILLTEMRGDEAWE-FVKAVGSGHPGISTAHAGGALEAFD 293
GS +++ A+ + LR PD IL+ EMR E + V A +GH + T H A E+ D
Sbjct: 185 GSDTLSFDDALRAALRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAPESID 244
Query: 294 QIV 296
+IV
Sbjct: 245 RIV 247
>gi|399795|sp|P31703|GSPE_ERWCA GENERAL SECRETION PATHWAY PROTEIN E
(TYPE II TRAFFIC WARDEN ATPASE) (PECTIC ENZYMES
SECRETION PROTEIN OUTE) >gi|479228|pir||S32859 outE
protein - Erwinia carotovora subsp. carotovora
>gi|42187|emb|CAA49646| (X70049) outE [Erwinia
carotovora]
Length = 498
Score = 56.6 bits (134), Expect = 3e-07
Identities = 46/150 (30%), Positives = 74/150 (48%), Gaps = 22/150 (14%)
Query: 154 EVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVED 212
++ELL + + NR + HG+ LV G TGSGK TT+ +++ ++ ++TVED
Sbjct: 232 DLELLGMSERNRQLLDSLIHRPHGIILV-TGPTGSGKSTTLYAALSRLNASERNIMTVED 290
Query: 213 VHEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMR-GDE 265
E Y +G G +N K + + + LR PD +L+ E+R G+
Sbjct: 291 PIE-------------YELEGIGQTQVNTKVDMTFARGLRAILRQDPDVVLVGEIRDGET 337
Query: 266 AWEFVKAVGSGHPGISTAHAGGALEAFDQI 295
A V+A +GH +ST H AL A ++
Sbjct: 338 AQIAVQASLTGHLVLSTLHTNSALGALSRL 367
>gi|6715487|gb|AAF26432.1|AF218835_3 (AF218835) PilT [Clostridium
perfringens]
Length = 350
Score = 56.6 bits (134), Expect = 3e-07
Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 174 MQHGLTLVIVGKTGSGKTTIGKSITNCIPT--DERLVTVEDVHEMFLNHHPNKVHLFYSR 231
++ GL LV G TGSGK+T ++ N I + + ++T+ED E FL+ H NK +
Sbjct: 121 LKRGLVLV-TGPTGSGKSTTLAALINEINSNRESHIITIEDPIE-FLHKH-NKSIVNQRE 177
Query: 232 DGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALE 290
G+ +LS ++A+ + LR PD IL+ EMR E + A +GH ST H GA +
Sbjct: 178 IGKDTLSY--ERALKAALREDPDVILIGEMRDLETISTAITAAETGHLVFSTLHTIGAAK 235
Query: 291 AFDQIV 296
D+IV
Sbjct: 236 TIDRIV 241
>gi|2598402|emb|CAA70956| (Y09824) etpE [Escherichia coli]
Length = 501
Score = 55.8 bits (132), Expect = 5e-07
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 24/151 (15%)
Query: 155 VELLALKKSNRIKEFLKLAMQ--HGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVE 211
++L AL S + + + ++ HG+ LV G TGSGK TT+ +++ P D ++TVE
Sbjct: 229 LDLAALGMSQQNQRHIDALIRRPHGIILV-TGPTGSGKSTTLYAALSLLNPRDRNIMTVE 287
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMR-GD 264
D E Y DG +NPK +++ + LR PD +L+ E+R G+
Sbjct: 288 DPVE-------------YELDGISQTQVNPKVDMTFARSLRAILRQDPDVVLVGEIRDGE 334
Query: 265 EAWEFVKAVGSGHPGISTAHAGGALEAFDQI 295
A V+A +GH +ST H A A ++
Sbjct: 335 TAQIAVQASLTGHLVLSTLHTNSAAGALSRL 365
>gi|3337001|dbj|BAA31760.1| (AB011549) Type II secretion pathway
related protein [Escherichia coli] >gi|3822148
(AF074613) type II secretion protein [Escherichia coli
O157:H7]
Length = 501
Score = 55.8 bits (132), Expect = 5e-07
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 24/151 (15%)
Query: 155 VELLALKKSNRIKEFLKLAMQ--HGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVE 211
++L AL S + + + ++ HG+ LV G TGSGK TT+ +++ P D ++TVE
Sbjct: 229 LDLAALGMSQQNQRHIDALIRRPHGIILV-TGPTGSGKSTTLYAALSLLNPRDRNIMTVE 287
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMR-GD 264
D E Y DG +NPK +++ + LR PD +L+ E+R G+
Sbjct: 288 DPVE-------------YELDGISQTQVNPKVDMTFARSLRAILRQDPDVVLVGEIRDGE 334
Query: 265 EAWEFVKAVGSGHPGISTAHAGGALEAFDQI 295
A V+A +GH +ST H A A ++
Sbjct: 335 TAQIAVQASLTGHLVLSTLHTNSAAGALSRL 365
>gi|6458124|gb|AAF10020.1|AE001903_8 (AE001903) twitching motility
protein [Deinococcus radiodurans]
Length = 359
Score = 55.4 bits (131), Expect = 7e-07
Identities = 43/132 (32%), Positives = 72/132 (53%), Gaps = 9/132 (6%)
Query: 169 FLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE--RLVTVEDVHEMFLNHHPNKVH 226
F +LA Q +++ G TGSGKTT S+ + I + + +VT+ED E+ H +K+
Sbjct: 119 FNELAEQERGLVLVTGPTGSGKTTTLASLIDYINSHQPVNIVTLEDPIEVL---HRDKMA 175
Query: 227 LFYSRD-GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWE-FVKAVGSGHPGISTAH 284
+ R+ G +LS + + + +R PD IL+ EMR E E + A +GH +ST H
Sbjct: 176 MVNQRELGLDTLSFS--NGLRAAMRQDPDIILIGEMRDKETVEAALSAAQTGHLVLSTLH 233
Query: 285 AGGALEAFDQIV 296
A+ + ++I+
Sbjct: 234 TQDAIRSVNRII 245
>gi|399796|sp|P31702|GSPE_ERWCH GENERAL SECRETION PATHWAY PROTEIN E
(TYPE II TRAFFIC WARDEN ATPASE) (PECTIC ENZYMES
SECRETION PROTEIN OUTE) >gi|477948|pir||C47021 pectic
enzyme secretion protein OutE - Erwinia chrysanthemi
>gi|259983|bbs|118272 OutE=pectic enzyme secretion
protein [Erwinia chrysanthemi, Peptide, 498 aa]
>gi|148435 (L02214) secretory component [Erwinia
chrysanthemi]
Length = 498
Score = 53.5 bits (126), Expect = 3e-06
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 154 EVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVED 212
++E L + + +R + + HG+ LV G T SGK TT+ +++ + ++TVED
Sbjct: 232 DLETLGMAEHHRRQLDTLIHRPHGIILV-TGPTASGKSTTLYAALSPLNSAERNIMTVED 290
Query: 213 VHEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMR-GDE 265
E Y +G G +NPK + + + LR PD +L+ E+R G+
Sbjct: 291 PIE-------------YELEGIGQTQVNPKVDMTFARGLRAILRQDPDVVLVGEIRDGET 337
Query: 266 AWEFVKAVGSGHPGISTAHAGGALEAFDQI 295
A V+A +GH +ST H AL A ++
Sbjct: 338 AQIAVQASLTGHLVLSTLHTNSALGALSRL 367
>gi|131593|sp|P15645|GSPE_KLEPN GENERAL SECRETION PATHWAY PROTEIN E
(TYPE II TRAFFIC WARDEN ATPASE) (PULLULANASE SECRETION
PROTEIN PULE) >gi|1072488|pir||C34469 pulE protein -
Klebsiella pneumoniae (strain UNF5023) >gi|149304
(M32613) pulE [Klebsiella pneumoniae]
Length = 497
Score = 52.7 bits (124), Expect = 5e-06
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 172 LAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYS 230
+A HG+ LV G TGSGK TT+ +++ + ++T+ED E Y
Sbjct: 244 IARPHGIVLV-TGPTGSGKSTTLYAALSRLDARERNIMTIEDPIE-------------YE 289
Query: 231 RDGEGSLSINPK------QAIASCLRMKPDRILLTEMR-GDEAWEFVKAVGSGHPGISTA 283
+G G +N K + + + LR PD +L+ E+R G+ A V+A +GH +ST
Sbjct: 290 LEGIGQTQVNAKVDMTFARGLRAILRQDPDVVLVGEIRDGETAQIAVQASLTGHLVLSTL 349
Query: 284 HAGGALEAFDQI 295
H AL A ++
Sbjct: 350 HTNSALGAISRL 361
>gi|1730571|sp|Q06581|PILT_NEIGO TWITCHING MOTILITY PROTEIN
>gi|420913|pir||S32916 pilT protein - Neisseria
gonorrhoeae >gi|293970 (L11719) twitching motility
protein [Neisseria gonorrhoeae]
Length = 374
Score = 52.7 bits (124), Expect = 5e-06
Identities = 46/144 (31%), Positives = 72/144 (49%), Gaps = 9/144 (6%)
Query: 157 LLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE--RLVTVEDVH 214
+L+L++ F K+A +++ G TGSGK+T ++ N I + ++T+ED
Sbjct: 130 VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIEDPI 189
Query: 215 EMFLNHHPNKVHLFYSRD-GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKA 272
E H +K L R+ + +LS A++S LR PD IL+ EMR E + A
Sbjct: 190 EFV---HQSKKSLINQRELHQHTLSF--ANALSSALREDPDVILVGEMRDPETIGLALTA 244
Query: 273 VGSGHPGISTAHAGGALEAFDQIV 296
+GH T H GA + D+IV
Sbjct: 245 AETGHLVFGTLHTTGAAKTVDRIV 268
>gi|139789|sp|Q00512|GSPE_PSEAE GENERAL SECRETION PATHWAY PROTEIN E
(TYPE II TRAFFIC WARDEN ATPASE) >gi|72483|pir||SKPSXR
secretion protein xcpR - Pseudomonas aeruginosa
>gi|45434|emb|CAA44533| (X62666) secretion protein XcpR
[Pseudomonas aeruginosa]
Length = 502
Score = 52.7 bits (124), Expect = 5e-06
Identities = 42/129 (32%), Positives = 65/129 (49%), Gaps = 22/129 (17%)
Query: 176 HGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGE 234
HG+ L++ G TGSGK TT+ S+T ++TVED P + HL +G
Sbjct: 256 HGI-LLVTGPTGSGKTTTLYASLTTLNDRTRNILTVED---------PIEYHL----EGI 301
Query: 235 GSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGG 287
G +N K + + + LR PD +++ E+R E E V+A +GH +ST H
Sbjct: 302 GQTQVNAKVDMTFARGLRAILRQDPDVVMVGEIRDRETAEIAVQASLTGHLVLSTLHTNS 361
Query: 288 ALEAFDQIV 296
A+ A ++V
Sbjct: 362 AIGAITRLV 370
>gi|632718|bbs|152041 (S72391) PilT=ATP binding casette protein
homolog [Neisseria gonorrhoeae, MS11, Peptide, 347 aa]
[Neisseria gonorrhoeae]
Length = 347
Score = 52.7 bits (124), Expect = 5e-06
Identities = 46/144 (31%), Positives = 72/144 (49%), Gaps = 9/144 (6%)
Query: 157 LLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE--RLVTVEDVH 214
+L+L++ F K+A +++ G TGSGK+T ++ N I + ++T+ED
Sbjct: 103 VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIEDPI 162
Query: 215 EMFLNHHPNKVHLFYSRD-GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKA 272
E H +K L R+ + +LS A++S LR PD IL+ EMR E + A
Sbjct: 163 EFV---HQSKKSLINQRELHQHTLSF--ANALSSALREDPDVILVGEMRDPETIGLALTA 217
Query: 273 VGSGHPGISTAHAGGALEAFDQIV 296
+GH T H GA + D+IV
Sbjct: 218 AETGHLVFGTLHTTGAAKTVDRIV 241
>gi|3025701 (AF038655) pilus assembly protein PilB [Legionella
pneumophila]
Length = 575
Score = 52.3 bits (123), Expect = 6e-06
Identities = 44/136 (32%), Positives = 64/136 (46%), Gaps = 21/136 (15%)
Query: 169 FLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE-RLVTVEDVHEMFLNHHPNKVHL 227
FLK + +++ G TGSGKT + N + T E + T ED E+ +
Sbjct: 318 FLKAIQRPQGMILVTGPTGSGKTVTLYTALNILNTIEVNISTAEDPVEIKV--------- 368
Query: 228 FYSRDGEGSLSINPKQ------AIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGI 280
G ++INPK A+ S LR PD I++ E+R E E VKA +GH +
Sbjct: 369 ----PGINQVNINPKAGLTFSGALRSFLRQDPDIIMVGEIRDLETAEIAVKAAQTGHLVL 424
Query: 281 STAHAGGALEAFDQIV 296
ST H A E +++V
Sbjct: 425 STLHTNSAAETLNRLV 440
>gi|3328331|gb|AAC26823.1| (AF074716) PilT [Neisseria meningitidis]
Length = 347
Score = 51.9 bits (122), Expect = 8e-06
Identities = 46/144 (31%), Positives = 71/144 (48%), Gaps = 9/144 (6%)
Query: 157 LLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE--RLVTVEDVH 214
+L+L++ F K+A +++ G TGSGK+T ++ N I + ++T+ED
Sbjct: 103 VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIEDPI 162
Query: 215 EMFLNHHPNKVHLFYSRD-GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKA 272
E H +K L R+ + +LS A+ S LR PD IL+ EMR E + A
Sbjct: 163 EFV---HQSKKSLINQRELHQHTLSF--ANALRSALREDPDVILVGEMRDPETIGLALTA 217
Query: 273 VGSGHPGISTAHAGGALEAFDQIV 296
+GH T H GA + D+IV
Sbjct: 218 AETGHLVFGTLHTTGAAKTVDRIV 241
>gi|3978479 (AF092918) outer membrane secretion protein R
[Pseudomonas alcaligenes]
Length = 503
Score = 51.5 bits (121), Expect = 1e-05
Identities = 45/152 (29%), Positives = 70/152 (45%), Gaps = 24/152 (15%)
Query: 155 VELLALKKSNRIKEFL--KLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVE 211
+ L L S R + L L HG+ LV G TGSGK TT+ + ++TVE
Sbjct: 234 LSLTHLGMSERDRRLLDDNLRKPHGIILV-TGPTGSGKTTTLYAGLVTLNDRSRNILTVE 292
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDE 265
D E +L +G G +NP+ + + + LR PD +++ E+R E
Sbjct: 293 DPIEYYL-------------EGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDQE 339
Query: 266 AWEF-VKAVGSGHPGISTAHAGGALEAFDQIV 296
+ V+A +GH +ST H A+ A ++V
Sbjct: 340 TADIAVQASLTGHLVLSTLHTNSAVGAVTRLV 371
>gi|130212|sp|P22608|PILB_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILB
>gi|94804|pir||A35384 pilB protein - Pseudomonas
aeruginosa >gi|151065 (M32066) pilin biogenesis protein
(pilB) [Pseudomonas aeruginosa]
Length = 566
Score = 50.8 bits (119), Expect = 2e-05
Identities = 45/152 (29%), Positives = 70/152 (45%), Gaps = 26/152 (17%)
Query: 155 VELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT---IGKSITNCIPTDERLVTVE 211
++ L ++ + L G+ LV G TGSGKT G +I N TD + T E
Sbjct: 298 IDALGYEEDQKELYLAALKQPQGMILV-TGPTGSGKTVSLYTGLNILNT--TDINISTAE 354
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQ------AIASCLRMKPDRILLTEMRGDE 265
D E+ L +G +++NP+Q A+ + LR PD I++ E+R E
Sbjct: 355 DPVEINL-------------EGINQVNVNPRQGMDFSQALRAFLRQDPDVIMVGEIRDLE 401
Query: 266 AWEF-VKAVGSGHPGISTAHAGGALEAFDQIV 296
E +KA +GH +ST H A E +++
Sbjct: 402 TAEIAIKAAQTGHMVMSTLHTNSAAETLTRLL 433
>gi|4186120|emb|CAA10651| (AJ132364) PilB protein [Pseudomonas
stutzeri]
Length = 567
Score = 50.4 bits (118), Expect = 2e-05
Identities = 45/151 (29%), Positives = 70/151 (45%), Gaps = 26/151 (17%)
Query: 155 VELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT---IGKSITNCIPTDERLVTVE 211
++ L ++S + L G+ LV G TGSGKT G +I N + D + T E
Sbjct: 299 IDALGYEESQKQLYMDALKQPQGMILV-TGPTGSGKTVSLYTGLNILNTV--DVNISTAE 355
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQ------AIASCLRMKPDRILLTEMRGDE 265
D E+ L +G +++NP+Q A+ + LR PD I++ E+R E
Sbjct: 356 DPVEINL-------------EGINQVNVNPRQGMDFAQALRAFLRQDPDVIMVGEIRDLE 402
Query: 266 AWEF-VKAVGSGHPGISTAHAGGALEAFDQI 295
E +KA +GH +ST H A E ++
Sbjct: 403 TAEIAIKAAQTGHMVMSTLHTNSAAETLTRL 433
>gi|1653652|dbj|BAA18564| (D90915) twitching motility protein
[Synechocystis sp.]
Length = 369
Score = 50.0 bits (117), Expect = 3e-05
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 180 LVIVGKTGSGKTTIGKSITNCI--PTDERLVTVEDVHEMFLNHHPNKVHLFYSRD-GEGS 236
+++ G+TGSGKTT +I + I E ++T+ED E PN LF+ R GE +
Sbjct: 130 ILVTGQTGSGKTTTLAAILDLINRTRAEHILTIEDPIEYVF---PNVRSLFHQRQRGEDT 186
Query: 237 LSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALEAFDQI 295
S + A+ + LR PD +L+ E+R E + A +GH T H A D++
Sbjct: 187 KSFS--NALRAALREDPDIVLVGELRDLETIALAITAAETGHLVFGTLHTNSAAGTIDRM 244
Query: 296 V 296
+
Sbjct: 245 L 245
>gi|399794|sp|P31741|GSPE_AERHY GENERAL SECRETION PATHWAY PROTEIN E
(TYPE II TRAFFIC WARDEN ATPASE) >gi|282064|pir||S22669
hypothetical protein 2 - Aeromonas hydrophila
>gi|38826|emb|CAA47126| (X66504) ExeE [Aeromonas
hydrophila]
Length = 501
Score = 49.6 bits (116), Expect = 4e-05
Identities = 43/146 (29%), Positives = 69/146 (46%), Gaps = 24/146 (16%)
Query: 158 LALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEM 216
+ L N I E ++ HG+ LV G TGSGK TT+ +++ D ++TVED E
Sbjct: 239 MTLANRNIISELIR--KPHGIILV-TGPTGSGKSTTLYAALSEINSRDRNILTVEDPIE- 294
Query: 217 FLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF- 269
Y +G G +N K + + + LR PD +++ E+R E +
Sbjct: 295 ------------YDLEGVGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIA 342
Query: 270 VKAVGSGHPGISTAHAGGALEAFDQI 295
V+A +GH +ST H A+ A ++
Sbjct: 343 VQASLTGHLVMSTLHTNTAIGAITRM 368
>gi|1174585|sp|P45792|TAPB_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPB
>gi|663116 (U20255) TapB [Aeromonas hydrophila]
>gi|1588983|prf||2209417B leader peptidase IV [Aeromonas
hydrophila]
Length = 568
Score = 49.2 bits (115), Expect = 5e-05
Identities = 44/150 (29%), Positives = 66/150 (43%), Gaps = 22/150 (14%)
Query: 155 VELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE-RLVTVEDV 213
+E L + + L+ G+ LV G TGSGKT + N + T E + T ED
Sbjct: 299 IEQLGFDDRQKAQYLRALSKPQGMILV-TGPTGSGKTVSLYTGLNILNTTEVNISTAEDP 357
Query: 214 HEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAW 267
E+ L G + +NPK A+ S LR PD +++ E+R E
Sbjct: 358 VEINL-------------PGVNQVQVNPKAGLTFASALRSFLRQDPDVVMVGEIRDLETA 404
Query: 268 EF-VKAVGSGHPGISTAHAGGALEAFDQIV 296
E +KA +GH +ST H A E +++
Sbjct: 405 EIAIKAAQTGHLVLSTLHTNSAAETLTRMM 434
>gi|3220230 (AF059248) type IV pilus assembly protein TapB
[Aeromonas salmonicida]
Length = 568
Score = 49.2 bits (115), Expect = 5e-05
Identities = 45/152 (29%), Positives = 67/152 (43%), Gaps = 26/152 (17%)
Query: 155 VELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT---IGKSITNCIPTDERLVTVE 211
+E L + + L+ G+ LV G TGSGKT G +I N T+ + T E
Sbjct: 299 IEQLGFDDRQKAQYLRALSKPQGMILV-TGPTGSGKTVSLYTGLNILNI--TEVNISTAE 355
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDE 265
D E+ L G + +NPK A+ S LR PD +++ E+R E
Sbjct: 356 DPVEINL-------------PGVNQVQVNPKAGLTFASALRSFLRQDPDVVMVGEIRDLE 402
Query: 266 AWEF-VKAVGSGHPGISTAHAGGALEAFDQIV 296
E +KA +GH +ST H A E +++
Sbjct: 403 TAEIAIKAAQTGHLVLSTLHTNSAAETLTRMM 434
>gi|2983313 (AE000705) twitching motility protein PilT [Aquifex
aeolicus]
Length = 366
Score = 48.8 bits (114), Expect = 7e-05
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 147 SGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE- 205
+ L E+ KK + L+L + +++ G TGSGK+T S+ + I +
Sbjct: 106 AAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKS 165
Query: 206 -RLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
++T+ED E H + V+ GE + S A+ + LR PD I + EMR
Sbjct: 166 YHIITIEDPIEYVFKHKKSIVN--QREVGEDTKSF--ADALRAALREDPDVIFVGEMRDL 221
Query: 265 EAWE-FVKAVGSGHPGISTAHAGGALEAFDQIV 296
E E ++A +GH T H A++ +IV
Sbjct: 222 ETVETALRAAETGHLVFGTLHTNTAIDTIHRIV 254
>gi|2119784|pir||S64728 protein secretion protein xcpR - Pseudomonas
putida >gi|531741|emb|CAA56980.1| (X81085) xcpR
[Pseudomonas putida]
Length = 482
Score = 48.4 bits (113), Expect = 9e-05
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDER-LVTVEDVHEMFLNHHPNKVHLFYS 230
LA +G+ L G TGSGKTT + N + R ++TVED E Y+
Sbjct: 235 LARPNGIVLS-TGPTGSGKTTTLYASLNSLNDGSRNILTVEDPVE-------------YA 280
Query: 231 RDGEGSLSINPKQAIA------SCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTA 283
G G +INP+ + + LR PD I+L E+R E + V+A +GH +ST
Sbjct: 281 IAGIGQTAINPRAGLTFASGLRAILRQDPDVIMLGEIRDQETAQIAVQASLTGHLVLSTL 340
Query: 284 HAGGALEAFDQI 295
H A+ A ++
Sbjct: 341 HTNSAVGAVTRL 352
>gi|6968897|emb|CAB73893.1| (AL139078) putative type II protein
secretion system E protein [Campylobacter jejuni]
Length = 519
Score = 48.4 bits (113), Expect = 9e-05
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 155 VELLALKKSNRIKEFLK--LAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVE 211
++L L N+ E LK L +G+ L + G TGSGK TT+ + ++++++ E
Sbjct: 260 LDLYKLNLGNKNLEILKKILHRPNGMIL-LTGPTGSGKSTTLYACLNELKSIEKKIISAE 318
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-V 270
D E K+ L + + + + LR PD I++ E+R +E+ + +
Sbjct: 319 DPIEY-------KIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIAL 371
Query: 271 KAVGSGHPGISTAHAGGALEAFDQIV 296
KA +GH +ST H AL D+++
Sbjct: 372 KASLTGHLLLSTLHTNDALSTIDRLL 397
>gi|4139237|gb|AAD05174.1| (AF110185) general secretory pathway
protein E [Burkholderia pseudomallei]
Length = 497
Score = 48.0 bits (112), Expect = 1e-04
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 22/149 (14%)
Query: 155 VELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDV 213
+E L + + ++ ++ HG+ LV G TGSGK TT+ S++ ++TVED
Sbjct: 242 LEALGMGRDTLVQFDKLISRPHGIVLV-TGPTGSGKTTTLYASMSRLETATTNIMTVEDP 300
Query: 214 HEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAW 267
E Y G G +N + +A+ S LR PD I++ E+R E
Sbjct: 301 IE-------------YDLSGIGQTQVNERIGMTFARALRSILRQDPDIIMIGEIRDLETA 347
Query: 268 EF-VKAVGSGHPGISTAHAGGALEAFDQI 295
+ V+A +GH ++T H A A ++
Sbjct: 348 QIAVQASLTGHLVLATLHTNDAASAVTRL 376
>gi|155380 (L02630) XpsE [Xanthomonas campestris]
Length = 531
Score = 47.6 bits (111), Expect = 2e-04
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 166 IKEFLKLAMQ-HGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPN 223
+ +F K+ Q HG+ LV G TGSGK TT+ +++ +D +++TVED E
Sbjct: 271 LPQFRKVLEQPHGIMLV-TGPTGSGKTTTLYTALSQLNTSDVKIITVEDPVE-------- 321
Query: 224 KVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSG 276
Y +G + P+ A+ S +R PD I++ EMR E +++ +G
Sbjct: 322 -----YQIEGINQIQAKPQIGLDFANAVRSIVRQDPDIIMIGEMRDLETARIAIQSALTG 376
Query: 277 HPGISTAHAGGA 288
H +ST H A
Sbjct: 377 HLVLSTLHTNNA 388
>gi|1653530|dbj|BAA18443| (D90914) twitching mobility protein
[Synechocystis sp.]
Length = 428
Score = 47.6 bits (111), Expect = 2e-04
Identities = 37/138 (26%), Positives = 71/138 (50%), Gaps = 8/138 (5%)
Query: 165 RIKEFLK-LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD--ERLVTVEDVHEMFLNHH 221
R+ + L+ ++ H +++ G TGSGK+T ++ + I + + ++++ED E H
Sbjct: 186 RLPDILRTVSDSHKGLILVTGPTGSGKSTTMAAMVDYINKEHAKHIISIEDPIEFV---H 242
Query: 222 PNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGI 280
++ L R+ G ++ A+ + LR PD IL+ EMR +KA +GH +
Sbjct: 243 QSRRSLIRQRE-VGMHTLEFDNALKASLREDPDIILIGEMRDRSTVNTALKAAQTGHLVM 301
Query: 281 STAHAGGALEAFDQIVAL 298
T H A++ ++I+ L
Sbjct: 302 GTLHTNSAIKTLERILTL 319
>gi|399797|sp|P31742|GSPE_XANCP GENERAL SECRETION PATHWAY PROTEIN E
(TYPE II TRAFFIC WARDEN ATPASE) >gi|77833|pir||S17937
xpsE protein - Xanthomonas campestris pv. campestris
>gi|48897|emb|CAA41803| (X59079) xpsE [Xanthomonas
campestris]
Length = 531
Score = 47.3 bits (110), Expect = 2e-04
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 166 IKEFLKLAMQ-HGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPN 223
+ +F K+ Q HG+ LV G TGSGK TT+ +++ +D +++TVED E
Sbjct: 271 LPQFRKVLEQPHGIMLV-TGPTGSGKTTTLYTALSQLNTSDVKIITVEDPVE-------- 321
Query: 224 KVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSG 276
Y +G + P+ A+ S +R PD I++ EMR E +++ +G
Sbjct: 322 -----YQIEGINQIQAKPQIGLDFANALRSIVRQDPDIIMIGEMRDLETARIAIQSALTG 376
Query: 277 HPGISTAHAGGA 288
H +ST H A
Sbjct: 377 HLVLSTLHTNNA 388
>gi|1170054|sp|P45759|GSPE_ECOLI PROBABLE GENERAL SECRETION PATHWAY
PROTEIN E (TYPE II TRAFFIC WARDEN ATPASE)
>gi|606260|gb|AAA58123.1| (U18997) ORF_o493 [Escherichia
coli] >gi|1789723 (AE000409) putative general secretion
pathway for protein export (GSP) (TYPE II TRAFFIC WARDEN
ATPASE) [Escherichia coli]
Length = 493
Score = 47.3 bits (110), Expect = 2e-04
Identities = 39/132 (29%), Positives = 64/132 (47%), Gaps = 22/132 (16%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDER-LVTVEDVHEMFLNHHPNKVHLFYS 230
+ + HG+ LV G TGSGK+T +I + + T R ++TVED E Y
Sbjct: 238 IQLPHGIILV-TGPTGSGKSTTLYAILSALNTPGRNILTVEDPVE-------------YE 283
Query: 231 RDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTA 283
+G G +N + + + + LR PD +++ E+R E + V+A +GH +ST
Sbjct: 284 LEGIGQTQVNTRVDMSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLSTL 343
Query: 284 HAGGALEAFDQI 295
H A A ++
Sbjct: 344 HTNSASGAVTRL 355
>gi|5918204|emb|CAB56296.1| (AJ249385) putative secretion protein
[Pseudomonas stutzeri]
Length = 381
Score = 47.3 bits (110), Expect = 2e-04
Identities = 40/132 (30%), Positives = 69/132 (51%), Gaps = 13/132 (9%)
Query: 171 KLAMQHGLTLVIVGKTGSGKTT-----IGKSITNCIPTDERLVTVEDVHEMFLNHHPNKV 225
KLA+ ++ VG TG+GK+T IG N + ++++ED E F++ H N +
Sbjct: 117 KLALTKRGLVLFVGATGTGKSTSLAAMIGYRNKN---SSGHIISIEDPIE-FIHQHQNCI 172
Query: 226 HLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVG-SGHPGISTAH 284
++ G + + + A+ + LR PD IL+ E+R E + A +GH ++T H
Sbjct: 173 ---VTQREVGIDTDSFEVALKNTLRQAPDVILIGEVRTRETMDHAVAFAETGHLCLATLH 229
Query: 285 AGGALEAFDQIV 296
A A +A D+I+
Sbjct: 230 ANNANQALDRII 241
>gi|2983859 (AE000742) general secretion pathway protein E [Aquifex
aeolicus]
Length = 469
Score = 46.9 bits (109), Expect = 3e-04
Identities = 42/146 (28%), Positives = 65/146 (43%), Gaps = 22/146 (15%)
Query: 158 LALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEM 216
L L K + K +G+ LV G TG+GK TT+ + + + ++T+ED E
Sbjct: 207 LGLSKGDEEKVRRLAEKPYGIVLV-TGPTGAGKSTTLYAMLLHVKNPKKNIITIEDPVE- 264
Query: 217 FLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF- 269
Y G + +NPK Q + + LR PD I++ E+R E E
Sbjct: 265 ------------YQVKGISQIQVNPKVGLTFAQGLRAILRQDPDVIMVGEIRDPETAEVA 312
Query: 270 VKAVGSGHPGISTAHAGGALEAFDQI 295
V+A +GH +ST H A A ++
Sbjct: 313 VQAALTGHLVLSTLHTNDAPSAITRL 338
>gi|585224|sp|P37093|GSPE_VIBCH GENERAL SECRETION PATHWAY PROTEIN E
(TYPE II TRAFFIC WARDEN ATPASE) (CHOLERA TOXIN SECRETION
PROTEIN EPSE) >gi|419593|pir||JU0147 cholera toxin -
Vibrio cholerae >gi|295430 (M96172) epsE [Vibrio
cholerae] >gi|609626|gb|AAA58786.1| (L33796) EpsE
[Vibrio cholerae]
Length = 503
Score = 46.5 bits (108), Expect = 3e-04
Identities = 38/128 (29%), Positives = 62/128 (47%), Gaps = 22/128 (17%)
Query: 176 HGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGE 234
HG+ LV G TGSGK TT+ + ++ ++TVED E + DG
Sbjct: 257 HGIILV-TGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE-------------FDIDGI 302
Query: 235 GSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGG 287
G +NP+ + + + LR PD +++ E+R E + V+A +GH +ST H
Sbjct: 303 GQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 362
Query: 288 ALEAFDQI 295
A+ A ++
Sbjct: 363 AVGAVTRL 370
>gi|1657238|emb|CAA70319| (Y09102) secretion protein XcpR
[Acinetobacter sp. ADP1]
Length = 446
Score = 46.5 bits (108), Expect = 3e-04
Identities = 39/128 (30%), Positives = 62/128 (47%), Gaps = 22/128 (17%)
Query: 176 HGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGE 234
HG+ LV G TGSGK TT+ ++++ ++T ED E Y +G
Sbjct: 197 HGIILV-TGPTGSGKTTTLYAALSDLNDQTRNILTAEDPIE-------------YQLEGI 242
Query: 235 GSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGG 287
G +N K +A+ + LR PD +++ E+R E E V+A +GH +ST H
Sbjct: 243 GQTQVNTKVDMTFARALKAMLRQDPDVVMVGEIRDLETAEIAVQASLTGHLVLSTLHTNT 302
Query: 288 ALEAFDQI 295
A+ A ++
Sbjct: 303 AIGAVTRL 310
>gi|4377128|gb|AAD18954| (AE001662) Genral Secretion Protein E
[Chlamydia pneumoniae]
Length = 496
Score = 46.1 bits (107), Expect = 4e-04
Identities = 37/150 (24%), Positives = 68/150 (44%), Gaps = 21/150 (14%)
Query: 180 LVIVGKTGSGKTTIGKSITNCIPTD-ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLS 238
L++ G TGSGKTT S+ + ++T+ED E Y G ++
Sbjct: 250 LLVTGPTGSGKTTTLYSVLQELKGPLTNIMTIEDPPE-------------YKLPGIAQIA 296
Query: 239 INPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALEA 291
+ PK + + LR PD +++ E+R E E ++A +GH +ST H A+ A
Sbjct: 297 VKPKIGLTFARGLRHLLRQDPDILMVGEIRDQETAEIAIQAALTGHLVVSTLHTNDAISA 356
Query: 292 FDQIVALIKDSATGAHLDAAYIKKRVFETV 321
+++ + +S + + +R+ T+
Sbjct: 357 IPRLLDMGIESYLLSATLVGVVAQRLVRTI 386
>gi|3329012|gb|AAC68173.1| (AE001327) Gen. Secretion Protein E
[Chlamydia trachomatis]
Length = 501
Score = 46.1 bits (107), Expect = 4e-04
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 180 LVIVGKTGSGKTTIGKSITNCIPTD-ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLS 238
L++ G TGSGKTT S+ + ++T+ED E Y G ++
Sbjct: 255 LLVTGPTGSGKTTTLYSVIQHLSGPFTNIMTIEDPPE-------------YKLPGVAQIA 301
Query: 239 INPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALEA 291
+ PK + + LR PD +++ E+R E E ++A +GH +ST H A+ A
Sbjct: 302 VKPKIGLTFSKGLRHLLRQDPDVLMVGEIRDQETAEIAIQAALTGHLVVSTLHTNDAVSA 361
Query: 292 FDQIV 296
+++
Sbjct: 362 IPRLL 366
>gi|1170330|sp|P44622|HOFB_HAEIN PROTEIN TRANSPORT PROTEIN HOFB
HOMOLOG >gi|1075157|pir||E64060 pilin biogenesis protein
(pilB) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573266 (U32715) protein transport protein
[Haemophilus influenzae Rd]
Length = 464
Score = 45.7 bits (106), Expect = 6e-04
Identities = 40/143 (27%), Positives = 68/143 (46%), Gaps = 21/143 (14%)
Query: 164 NRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPT-DERLVTVEDVHEMFLNHHP 222
N+ + F ++ Q +++ G TGSGK+ + + T D+ ++T ED E+ L
Sbjct: 244 NQQQAFQRVLSQPQGLILVTGPTGSGKSISLYTALQWLNTPDKHIMTAEDPIEIEL---- 299
Query: 223 NKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDE-AWEFVKAVGS 275
DG INP+ + + + LR PD I+L E+R +E A ++A +
Sbjct: 300 ---------DGIIQSQINPQIGLDFNRLLRTFLRQDPDIIMLGEIRDEESAMIALRAAQT 350
Query: 276 GHPGISTAHAGGALEAFDQIVAL 298
GH +ST H A+ A ++ L
Sbjct: 351 GHLVLSTLHTNDAISAISRLQQL 373
>gi|791159 (L19085) mannose-sensitive hemagglutinin E [Vibrio
cholerae]
Length = 535
Score = 45.3 bits (105), Expect = 8e-04
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 171 KLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD-ERLVTVEDVHEMFLNHHPNKVHLFY 229
+L HG+ LV G TGSGKTT N + T ++++TVED E ++ N+V +
Sbjct: 311 QLKRPHGMNLV-TGPTGSGKTTTLYGALNELNTSGKKIITVEDPVEYRIS-RINQVQV-- 366
Query: 230 SRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGA 288
++++ + + LR PD IL+ EM E E ++A +GH +ST +
Sbjct: 367 ----NPKINLDFSTLLRTFLRQDPDIILVGEMCDQETVEIGLRAALTGHLVLSTLYTN-- 420
Query: 289 LEAFDQIVALIKDSATG 305
+A D + LI A G
Sbjct: 421 -DAVDSALRLIDMGAPG 436
>gi|4981922|gb|AAD36432.1|AE001790_4 (AE001790) motility protein
PilT [Thermotoga maritima]
Length = 360
Score = 45.3 bits (105), Expect = 8e-04
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 166 IKEFLKLAMQHGLTLVIV-GKTGSGKTTIGKSITNCIPTD--ERLVTVEDVHEMFLNHHP 222
+ E LK ++ L++V G TGSGK+T ++ + I + ++T+ED E
Sbjct: 117 LPEILKTFVERKYGLILVAGPTGSGKSTTLAAMIDHINENFPHHIITIEDPIEYVFT--- 173
Query: 223 NKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGIS 281
NK + + R+ GS + + + LR PD IL+ EMR E + A +GH ++
Sbjct: 174 NKKSVIHQRE-LGSDTDSFYNGLKYALRQDPDVILVGEMRDLETMALALTAAETGHLVLA 232
Query: 282 TAHAGGALEAFDQIV 296
T H A A ++I+
Sbjct: 233 TVHTNSAASAPERII 247
>gi|5918203|emb|CAB56295.1| (AJ249385) twitching motility protein
[Pseudomonas stutzeri]
Length = 344
Score = 45.3 bits (105), Expect = 8e-04
Identities = 47/164 (28%), Positives = 76/164 (45%), Gaps = 11/164 (6%)
Query: 137 AFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLA-MQHGLTLVIVGKTGSGKTTIGK 195
AF+Q N A ++L ++ + F K+ + GL LV G TGSGK+T
Sbjct: 85 AFNQ--NRGAGAVFRTIPSKVLTMEDLGMGEVFRKITDVPRGLVLV-TGPTGSGKSTTLA 141
Query: 196 SITNCIPTDE--RLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKP 253
++ + + + ++T+ED E H +K L R+ ++ +A+ S LR P
Sbjct: 142 AMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVHRD-TLGFSEALRSALREDP 197
Query: 254 DRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALEAFDQIV 296
D IL+ EMR E + A +GH T H A + D++V
Sbjct: 198 DIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241
>gi|130214|sp|P24559|PILT_PSEAE TWITCHING MOBILITY PROTEIN
>gi|77679|pir||JN0055 PilT protein - Pseudomonas
aeruginosa >gi|151490 (M55524) twitching motility
protein [Pseudomonas aeruginosa]
Length = 344
Score = 44.9 bits (104), Expect = 0.001
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 137 AFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLA-MQHGLTLVIVGKTGSGKTTIGK 195
AF+Q N A ++L +++ + F +++ + GL LV G TGSGK+T
Sbjct: 85 AFNQ--NRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLV-TGPTGSGKSTTLA 141
Query: 196 SITNCIPTDE--RLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKP 253
++ + + + ++T+ED E H +K L R+ ++ +A+ S LR P
Sbjct: 142 AMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVHRD-TLGFSEALRSALREDP 197
Query: 254 DRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALEAFDQIV 296
D IL+ EMR E + A +GH T H A + D++V
Sbjct: 198 DIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241
>gi|2984344 (AE000775) twitching mobility protein [Aquifex aeolicus]
Length = 370
Score = 44.9 bits (104), Expect = 0.001
Identities = 41/142 (28%), Positives = 67/142 (46%), Gaps = 8/142 (5%)
Query: 161 KKSNRIKEFLKLAMQHGLTLVIV-GKTGSGKTTIGKSITNCI--PTDERLVTVEDVHEMF 217
KK N L+ A++H +++V G TGSGK+T SI N I ++T+ED E
Sbjct: 109 KKLNLPPVMLQTALKHSAGMILVTGPTGSGKSTTIASIINEINKRLSRVIITIEDPIEYL 168
Query: 218 LNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE-AWEFVKAVGSG 276
+ F ++ G + + + + LR PD I + E+R E A + A +G
Sbjct: 169 F----KDIQSFIAQREVGWDTESFFLGLRAALREDPDIIFVGEIRDTETAKTALHAAETG 224
Query: 277 HPGISTAHAGGALEAFDQIVAL 298
H ST H A+E ++ + +
Sbjct: 225 HLVFSTLHTLDAVETINRFIGM 246
>gi|6458902|gb|AAF10736.1|AE001965_10 (AE001965) twitching motility
protein [Deinococcus radiodurans]
Length = 357
Score = 44.9 bits (104), Expect = 0.001
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 173 AMQHGLTLVIVGKTGSGKTTIGKSITNCIPTD--ERLVTVEDVHEMFLNHHPNKVHLFYS 230
A+ GL L I G TGSGKTT S+ + + ++T+ED E+ H N+ +
Sbjct: 121 ALPRGLVL-ITGPTGSGKTTTVASLIDYLNRHFAYHILTIEDPIEVL--HRNNRSLVVQR 177
Query: 231 RDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWE-FVKAVGSGHPGISTAHAGGAL 289
G + S A+ LR PD I++ E+R E E + A +GH IST H A+
Sbjct: 178 EVGRDTRSF--AAALRHALRQDPDVIVIGEIRDRETVEAALLAAQTGHLVISTLHTQDAV 235
Query: 290 EAFDQI 295
+I
Sbjct: 236 RTVGRI 241
>gi|585697|sp|P37094|PILF_NEIGO TYPE IV PILUS ASSEMBLY PROTEIN PILF
>gi|420911|pir||S32914 pilF protein - Neisseria
gonorrhoeae >gi|996085|gb|AAC43465.1| (U32588) PilF
[Neisseria gonorrhoeae]
Length = 558
Score = 44.5 bits (103), Expect = 0.001
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 176 HGLTLVIVGKTGSGKTTIGKSITNCIPTDE-RLVTVEDVHEMFLNHHPNKVHLFYSRDGE 234
+G+ LV G TGSGKT + N + T+ + T ED E+ L G
Sbjct: 308 YGMVLV-TGPTGSGKTVSLYTCLNILNTESVNIATAEDPAEINL-------------PGI 353
Query: 235 GSLSINPKQ------AIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGG 287
+++N KQ A+ S LR PD I++ E+R E + +KA +GH ST H
Sbjct: 354 NQVNVNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETADIAIKAAQTGHMVFSTLHTNN 413
Query: 288 A 288
A
Sbjct: 414 A 414
>gi|1723860|sp|P52052|YGGR_ECOLI HYPOTHETICAL 36.0 KD PROTEIN IN
GSHB-ANSB INTERGENIC REGION
Length = 326
Score = 44.1 bits (102), Expect = 0.002
Identities = 39/128 (30%), Positives = 64/128 (49%), Gaps = 8/128 (6%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCIP--TDERLVTVEDVHEMFLNHHPNKVHLFY 229
L ++GL LV G TGSGK+T ++ + D ++T+ED E + ++ L
Sbjct: 116 LKSENGLILV-TGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYL---YASQRCLIQ 171
Query: 230 SRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGA 288
R+ G + + + LR PD ILL E+R E + A +GH ++T H GA
Sbjct: 172 QRE-IGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGA 230
Query: 289 LEAFDQIV 296
+A +++V
Sbjct: 231 AQAVERLV 238
>gi|882479 (U28377) ORF_f341 [Escherichia coli] >gi|1789320
(AE000378) putative protein transport [Escherichia coli]
Length = 341
Score = 44.1 bits (102), Expect = 0.002
Identities = 39/128 (30%), Positives = 64/128 (49%), Gaps = 8/128 (6%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCIP--TDERLVTVEDVHEMFLNHHPNKVHLFY 229
L ++GL LV G TGSGK+T ++ + D ++T+ED E + ++ L
Sbjct: 131 LKSENGLILV-TGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYL---YASQRCLIQ 186
Query: 230 SRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGA 288
R+ G + + + LR PD ILL E+R E + A +GH ++T H GA
Sbjct: 187 QRE-IGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGA 245
Query: 289 LEAFDQIV 296
+A +++V
Sbjct: 246 AQAVERLV 253
>gi|548896|sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN SAPF >gi|470683 (U08190) Shows similarity with
ATP-binding proteins from other ABC-transport operons,
Swiss Prot Accession Numbers P24137, P08007, P04285,
P24136 [Escherichia coli] >gi|1279404|emb|CAA65941|
(X97282) SapF protein [Escherichia coli]
>gi|1742103|dbj|BAA14843| (D90766) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1742112|dbj|BAA14851| (D90767) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1787547 (AE000227) putative ATP-binding protein of
peptide transport system [Escherichia coli]
Length = 268
Score = 43.0 bits (99), Expect = 0.004
Identities = 33/111 (29%), Positives = 55/111 (48%), Gaps = 11/111 (9%)
Query: 170 LKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI-PTD-ERLVTVEDVHEMFLNHHPNKVHL 227
L ++ G TL I+G+ GSGK+T+ K + I PT E L+ +H + ++ +
Sbjct: 33 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRM 92
Query: 228 FYSRDGEGSLSINPKQAIASC----LRMKPDRILLTEMRGDEAWEFVKAVG 274
+ + S S+NP+Q I+ LR+ D L E R + E ++ VG
Sbjct: 93 IFQ---DPSTSLNPRQRISQILDFPLRLNTD--LEPEQRRKQIIETMRMVG 138
>gi|2984219 (AE000766) type IV pilus assembly protein TapB [Aquifex
aeolicus]
Length = 566
Score = 43.0 bits (99), Expect = 0.004
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 21/125 (16%)
Query: 180 LVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLS 238
+++ G TGSGK TT+ S+ D ++TVED E+ S G +
Sbjct: 319 ILVSGPTGSGKTTTLYASLMERNTPDVNIMTVEDPVEV-------------SIPGINQVQ 365
Query: 239 INPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALEA 291
+N K + + LR PD IL+ E+R E E ++A +GH ST HA A
Sbjct: 366 VNEKIGLTFANVLRAFLRQDPDIILVGEIRDSETAEIAIRASLTGHLVFSTVHANDAPTT 425
Query: 292 FDQIV 296
++V
Sbjct: 426 VTRLV 430
>gi|2120641|pir||S54702 pilU protein - Pseudomonas aeruginosa
>gi|443686 (L27667) pilU [Pseudomonas aeruginosa]
>gi|1091224|prf||2020419A pilU gene [Pseudomonas
aeruginosa]
Length = 382
Score = 42.6 bits (98), Expect = 0.005
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 171 KLAMQHGLTLVIVGKTGSGKTT-----IGKSITNCIPTDERLVTVEDVHEMFLNHHPNKV 225
KLA+ ++ VG TG+GK+T IG N + ++++ED E +++ H +
Sbjct: 117 KLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKN---STGHIISIEDPIE-YIHQHQGCI 172
Query: 226 HLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVG-SGHPGISTAH 284
++ G + + + A+ + LR PD I++ E+R E + A +GH ++T H
Sbjct: 173 ---VTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLH 229
Query: 285 AGGALEAFDQIV 296
A A +A ++I+
Sbjct: 230 ANNANQALERII 241
>gi|4512533|dbj|BAA75182.1| (AB021078) ATP-binding protein [Plasmid
ColIb-P9] >gi|4903092|dbj|BAA77977.1| (AB027308)
nucleotide-binding protein [Plasmid R64]
Length = 517
Score = 42.6 bits (98), Expect = 0.005
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 180 LVIVGKTGSGKTTIGKSITNCIPTDER---LVTVEDVHEMFLNHHPNKVHLFYSRDGEGS 236
+V+ G TGSGK+T +S D + L+T+ED E + + + + E +
Sbjct: 228 IVLSGPTGSGKSTTLRSACRVYLDDNQGRHLLTIEDPLEGQILG-ATQTPIICDKSDEDA 286
Query: 237 LSINPKQAIASCLRMKPDRILLTEMRG-DEAWEFVKAVGSGHPGISTAHAGGALEAFDQI 295
+ + +AI+S +R+ PD I+ EMR A +GH ++T H AL +++
Sbjct: 287 VKLAWSRAISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERM 346
Query: 296 V--ALIKDSATGAHLDAAYIKKRVFETV 321
+ + D A L I +R+ T+
Sbjct: 347 ITMGMNADLICDAQLLIGMISQRLVPTL 374
>gi|790209 (U17138) FimN [Dichelobacter nodosus]
Length = 564
Score = 42.2 bits (97), Expect = 0.007
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 26/152 (17%)
Query: 155 VELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT---IGKSITNCIPTDERLVTVE 211
+E+L + + + ++ GL LV G TGSGKT G +I N PT + T E
Sbjct: 294 IEILGFEPDQKQQYLDAISKPQGLVLV-TGPTGSGKTVSLYTGLNILN-KPT-VNISTAE 350
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDE 265
D E+ L G +++NPK A+ + LR PD I++ E+R
Sbjct: 351 DPVEINL-------------PGINQVNVNPKTGLDFSAALKAFLRQDPDIIMVGEIRDIT 397
Query: 266 AWEF-VKAVGSGHPGISTAHAGGALEAFDQIV 296
E VKA +GH +ST H + ++V
Sbjct: 398 TAEIAVKAAQTGHLVLSTLHTNDVPQTIARLV 429
>gi|4455002|gb|AAD21030| (AF109904) type IV-A pilus assembly protein
PilB [Vibrio cholerae]
Length = 562
Score = 42.2 bits (97), Expect = 0.007
Identities = 36/119 (30%), Positives = 55/119 (45%), Gaps = 21/119 (17%)
Query: 180 LVIVGKTGSGKTTIGKSITNCIPTDE-RLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLS 238
+++ G TGSGKT + + T + + T ED E+ L+ G +
Sbjct: 320 ILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLS-------------GINQVQ 366
Query: 239 INPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGALE 290
+ PK +A+ S LR PD +++ E+R E E VKA +GH +ST H A E
Sbjct: 367 VQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAE 425
>gi|1084133|pir||S55026 secretion protein - Aeromonas salmonicida
>gi|624689 (L38960) secretion protein [Aeromonas
salmonicida]
Length = 552
Score = 41.8 bits (96), Expect = 0.009
Identities = 36/129 (27%), Positives = 60/129 (45%), Gaps = 22/129 (17%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE-RLVTVEDVHEMFLNHHPNKVHLFYS 230
++ ++G+ L I G TGSGKTT ++ + + +E +++T ED E Y
Sbjct: 299 ISQRNGIFL-ITGPTGSGKTTSLYTLLSQVNDEEKKIITAEDPVE-------------YQ 344
Query: 231 RDGEGSLSINP------KQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTA 283
G + +N + S LR PD +L+ EMR E + +++ +GH ST
Sbjct: 345 MQGLTQIQVNSDIGLDFATILRSALRQDPDIMLIGEMRDKETAQIAIQSALTGHFVFSTL 404
Query: 284 HAGGALEAF 292
H A +F
Sbjct: 405 HTNDAPSSF 413
>gi|4417286|gb|AAD20411.1| (AC007019) putative shikimate kinase
precursor [Arabidopsis thaliana]
Length = 292
Score = 41.8 bits (96), Expect = 0.009
Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 14/85 (16%)
Query: 147 SGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSIT-------- 198
+G+++P++ ++L +K+ +K +L +G ++ +VG GSGKTT+GK ++
Sbjct: 78 TGSVYPFDEDILK-RKAEEVKPYL-----NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFF 131
Query: 199 NCIPTDERLVTVEDVHEMFLNHHPN 223
+C E+ + V E+F++H N
Sbjct: 132 DCDTLIEQAMNGTSVAEIFVHHGEN 156
>gi|4512516|dbj|BAA75165.1| (AB021078) ATP-binding protein [Plasmid
ColIb-P9] >gi|4903110|dbj|BAA77995.1| (AB027308)
nucleotide-binding protein [Plasmid R64]
Length = 382
Score = 41.8 bits (96), Expect = 0.009
Identities = 39/135 (28%), Positives = 65/135 (47%), Gaps = 10/135 (7%)
Query: 182 IVGKTGSGKTTIGKSITNCIP---TDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLS 238
+ G+TGSGK+T+ ++ I D ++VT ED E L + + + + G +S
Sbjct: 162 VCGETGSGKSTLCSALYRYIMDNFPDAKIVTYEDPVEYILGNENDLLPPHQAEIGRDVVS 221
Query: 239 INPKQAIASCLRMKPDRILLTEMRGDE-AWEFVKAVGSGHPGISTAHAGGALEAFDQIVA 297
+ S +R P+ I + E+R +E A V+A +GH +ST H E +++
Sbjct: 222 F--AAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARLLG 279
Query: 298 L----IKDSATGAHL 308
L I+DS A L
Sbjct: 280 LFPPVIRDSMAWAVL 294
>gi|456043 (L28105) homologous to PilB of Pseudomonas aeruginosa
[Escherichia coli]
Length = 461
Score = 41.4 bits (95), Expect = 0.011
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 172 LAMQHGLTLVIVGKTGSGKT-TIGKSITNCIPTDERLVTVEDVHEM-FLNHHPNKVHLFY 229
L GL LV G TGSGKT T+ ++ D + +VED E+ + ++H
Sbjct: 211 LQQPQGLVLV-TGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIH--- 266
Query: 230 SRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGA 288
R G + + + + LR PD I++ E+R E E +KA +GH +ST H
Sbjct: 267 PRAG-----LTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNST 321
Query: 289 LE 290
E
Sbjct: 322 CE 323
>gi|847974 (U27184) BfpD [Escherichia coli]
>gi|6009384|dbj|BAA84843.1| (AB024946) BfpD [Escherichia
coli]
Length = 534
Score = 41.4 bits (95), Expect = 0.011
Identities = 36/131 (27%), Positives = 58/131 (43%), Gaps = 29/131 (22%)
Query: 181 VIVGKTGSGKTTIGKSITNCIPTDER----LVTVEDVHEMFLNHHPNKVHLFYSRDGEGS 236
+I G TGSGK+T K++ + +++ ++++ED E Y DG
Sbjct: 257 IISGPTGSGKSTTLKNLLELLYIEKKKKVNIISIEDPPE-------------YEIDGTAQ 303
Query: 237 LSINP-----------KQAIASCLRMKPDRILLTEMRGDEAWEFV-KAVGSGHPGISTAH 284
L I ++AI + LR PD I+ E R E + A +GH ++ H
Sbjct: 304 LPITNVETEAQRGEEYRKAITAALRSDPDIIMPGEARDAEVINLLFTAAMTGHQVWTSLH 363
Query: 285 AGGALEAFDQI 295
A AL FD++
Sbjct: 364 ANNALAIFDRL 374
>gi|847976 (U27184) BfpF [Escherichia coli]
>gi|6009386|dbj|BAA84845.1| (AB024946) BfpF [Escherichia
coli]
Length = 331
Score = 41.4 bits (95), Expect = 0.011
Identities = 51/172 (29%), Positives = 83/172 (47%), Gaps = 21/172 (12%)
Query: 170 LKLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPT-DERLVTVEDVHEMFL--NHHPNKV 225
LKL + L++ G TGSGK TTI +T + + +++ED E+ + N+ N+
Sbjct: 120 LKLMGKKRGLLLVSGATGSGKSTTIYALLTYYVQKYGDIAISIEDPPEVPVQGNYGDNQE 179
Query: 226 HLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE-AWEFVKAVGSGHPGISTAH 284
+++ D + A+ S +R P I L E+R + A E ++A +GH +ST H
Sbjct: 180 GVWFQMDARELGGY--ENAMISAMRYNPRYIFLGEIRSAKTAKEAIRAAVNGHLVVSTIH 237
Query: 285 AG---GALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIVLYYVHHKLR 333
GA+ A QI SA G +A ++ + D +L VH +LR
Sbjct: 238 GSSVQGAIYALQQIA-----SAEG---EADLVRSII---ADGLLGIVHQELR 278
>gi|1122405|emb|CAA92331| (Z68186) BfpD [Escherichia coli]
Length = 534
Score = 41.4 bits (95), Expect = 0.011
Identities = 36/131 (27%), Positives = 58/131 (43%), Gaps = 29/131 (22%)
Query: 181 VIVGKTGSGKTTIGKSITNCIPTDER----LVTVEDVHEMFLNHHPNKVHLFYSRDGEGS 236
+I G TGSGK+T K++ + +++ ++++ED E Y DG
Sbjct: 257 IISGPTGSGKSTTLKNLLELLYIEKKKKVNIISIEDPPE-------------YEIDGTAQ 303
Query: 237 LSINP-----------KQAIASCLRMKPDRILLTEMRGDEAWEFV-KAVGSGHPGISTAH 284
L I ++AI + LR PD I+ E R E + A +GH ++ H
Sbjct: 304 LPITNVETEAQRGEEYRKAITAALRSDPDIIMPGEARDAEVINLLFTAAMTGHQVWTSLH 363
Query: 285 AGGALEAFDQI 295
A AL FD++
Sbjct: 364 ANNALAIFDRL 374
>gi|1122407|emb|CAA92333| (Z68186) BfpF [Escherichia coli]
Length = 318
Score = 41.4 bits (95), Expect = 0.011
Identities = 51/172 (29%), Positives = 83/172 (47%), Gaps = 21/172 (12%)
Query: 170 LKLAMQHGLTLVIVGKTGSGK-TTIGKSITNCIPT-DERLVTVEDVHEMFL--NHHPNKV 225
LKL + L++ G TGSGK TTI +T + + +++ED E+ + N+ N+
Sbjct: 107 LKLMGKKRGLLLVSGATGSGKSTTIYALLTYYVQKYGDIAISIEDPPEVPVQGNYGDNQE 166
Query: 226 HLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE-AWEFVKAVGSGHPGISTAH 284
+++ D + A+ S +R P I L E+R + A E ++A +GH +ST H
Sbjct: 167 GVWFQMDARELGGY--ENAMISAMRYNPRYIFLGEIRSAKTAKEAIRAAVNGHLVVSTIH 224
Query: 285 AG---GALEAFDQIVALIKDSATGAHLDAAYIKKRVFETVDIVLYYVHHKLR 333
GA+ A QI SA G +A ++ + D +L VH +LR
Sbjct: 225 GSSVQGAIYALQQIA-----SAEG---EADLVRSII---ADGLLGIVHQELR 265
>gi|2506492|sp|P36645|HOFB_ECOLI PROTEIN TRANSPORT PROTEIN HOFB
>gi|1786296 (AE000119) putative integral membrane
protein involved in biogenesis of fimbriae, protein
transport, DNA uptake [Escherichia coli]
Length = 461
Score = 41.4 bits (95), Expect = 0.011
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 172 LAMQHGLTLVIVGKTGSGKT-TIGKSITNCIPTDERLVTVEDVHEM-FLNHHPNKVHLFY 229
L GL LV G TGSGKT T+ ++ D + +VED E+ + ++H
Sbjct: 211 LQQPQGLVLV-TGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIH--- 266
Query: 230 SRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAGGA 288
R G + + + + LR PD I++ E+R E E +KA +GH +ST H
Sbjct: 267 PRAG-----LTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNST 321
Query: 289 LE 290
E
Sbjct: 322 CE 323
>gi|267089|sp|P29480|TCPT_VIBCH TOXIN CORREGULATED PILUS
BIOSYNTHESIS PROTEIN T (TCP PILUS BIOSYNTHESIS PROTEIN
TCPT) >gi|484354|pir||JN0524 tcpT protein - Vibrio
cholerae >gi|48415|emb|CAA45462| (X64098) tcpT [Vibrio
cholerae]
Length = 503
Score = 41.0 bits (94), Expect = 0.015
Identities = 40/134 (29%), Positives = 62/134 (45%), Gaps = 12/134 (8%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDER-----LVTVEDVHEMFLNHHPNKVH 226
L +GL ++ G TGSGK+T K + ++ VTVED E +L +
Sbjct: 225 LNTSYGL-FIVSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVEDPVE-YLISGAQQSS 282
Query: 227 LFYSRDGEGSLSINP-KQAIASCLRMKPDRILLTEMRGDEAWEFVK-AVGSGHPGISTAH 284
+ D + NP A+ S +R PD I++ E+R E + AV SGH ++T H
Sbjct: 283 IVADNDDKTK---NPFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVESGHYCLTTIH 339
Query: 285 AGGALEAFDQIVAL 298
AG + ++ L
Sbjct: 340 AGSVVSVLQRLSGL 353
>gi|3256099|emb|CAA10913| (AJ222649) sapF [Erwinia chrysanthemi]
Length = 269
Score = 41.0 bits (94), Expect = 0.015
Identities = 21/73 (28%), Positives = 39/73 (52%), Gaps = 1/73 (1%)
Query: 179 TLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLS 238
TL I+G+ GSGK+T+ K ++ IP + ++D + ++H + S + + S
Sbjct: 42 TLAIIGENGSGKSTLAKMLSGVIPPTSGELVIDDHPLQYGDYHYRSQRIRMSIQ-DSATS 100
Query: 239 INPKQAIASCLRM 251
+NP+Q I L +
Sbjct: 101 LNPRQRIGQLLEL 113
>gi|4981369|gb|AAD35919.1|AE001750_13 (AE001750) general secretion
pathway protein E [Thermotoga maritima]
Length = 566
Score = 41.0 bits (94), Expect = 0.015
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 166 IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE-RLVTVEDVHEMFLNHHPNK 224
+K L L + +++ G TGSGK+T ++ N + ++ +VT ED E
Sbjct: 304 LKRILSLLEKPYGIILVTGPTGSGKSTTLVAMINYLKSESVNIVTAEDPVE--------- 354
Query: 225 VHLFYSRDGEGSLSINPK------QAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGH 277
Y+ +G + P+ + + + LR PD I++ E+R E + V+A +GH
Sbjct: 355 ----YTIEGVTQCQVFPEIGLTFARYLRAFLRQDPDIIMVGEIRDRETAQLAVEASLTGH 410
Query: 278 PGISTAHAGGALEAFDQIVAL 298
+ST H A A +++ +
Sbjct: 411 LVLSTLHTNTAAGAVSRLIEM 431
>gi|3211748 (AF052207) competence protein [Streptococcus pneumoniae]
Length = 339
Score = 40.6 bits (93), Expect = 0.020
Identities = 35/134 (26%), Positives = 63/134 (46%), Gaps = 9/134 (6%)
Query: 166 IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKV 225
I+E K Q GL L G GSGKTT+ ++ + ++++++ED E+ K
Sbjct: 121 IEELGKQYRQRGLYL-FAGPVGSGKTTLMHELSKSLFKGQQVMSIEDPVEI-------KQ 172
Query: 226 HLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE-AWEFVKAVGSGHPGISTAH 284
++ + + I LR +PD +++ E+R E A V+A +G ST H
Sbjct: 173 DDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIH 232
Query: 285 AGGALEAFDQIVAL 298
A +++++ L
Sbjct: 233 AKSIRGVYERLLEL 246
>gi|548897|sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN SAPF >gi|628821|pir||S39589 hypothetical protein
- Salmonella typhimurium >gi|414212|emb|CAA52288|
(X74212) sapF [Salmonella typhimurium]
Length = 268
Score = 40.2 bits (92), Expect = 0.026
Identities = 32/111 (28%), Positives = 54/111 (47%), Gaps = 11/111 (9%)
Query: 170 LKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI-PTD-ERLVTVEDVHEMFLNHHPNKVHL 227
L ++ TL I+G+ GSGK+T+ K + I PT E L+ +H + ++ +
Sbjct: 33 LSFTLRERQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHYGDYSFRSQRIRM 92
Query: 228 FYSRDGEGSLSINPKQAIASC----LRMKPDRILLTEMRGDEAWEFVKAVG 274
+ + S S+NP+Q I+ LR+ D L E R + E ++ VG
Sbjct: 93 IFQ---DPSTSLNPRQRISQILDFPLRLNTD--LEPEQRRKQIVETMRMVG 138
>gi|2895280 (AF026533) DotB [Legionella pneumophila]
Length = 377
Score = 39.5 bits (90), Expect = 0.044
Identities = 36/130 (27%), Positives = 59/130 (44%), Gaps = 7/130 (5%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCI----PTDERLVTVEDVHEMFLNHHPNKVHL 227
+A Q G+ I G TGSGK+T+ SI + ++ +++T E E F+ +
Sbjct: 145 IAPQEGIVF-ITGATGSGKSTLLASIIRELIETSDSNRKVLTYESPIE-FVYDEIETISA 202
Query: 228 FYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGISTAHAG 286
S+ N + + LR KP I++ E R E ++A +GHP +T H
Sbjct: 203 VVSQSEIPRHLPNFADGVRNALRRKPRLIMVGECRDAETISAALEAALTGHPVYTTLHTS 262
Query: 287 GALEAFDQIV 296
G E ++V
Sbjct: 263 GVAETMRRLV 272
>gi|1352095|sp|P25953|CMG1_BACSU COMG OPERON PROTEIN 1
>gi|98254|pir||B30338 comG operon protein 1 - Bacillus
subtilis >gi|142706 (M29691) comG1 gene product
[Bacillus subtilis] >gi|1303877|dbj|BAA12533| (D84432)
ComGA [Bacillus subtilis] >gi|2634907|emb|CAB14404|
(Z99116) late competence gene [Bacillus subtilis]
Length = 356
Score = 38.3 bits (87), Expect = 0.099
Identities = 39/135 (28%), Positives = 61/135 (44%), Gaps = 25/135 (18%)
Query: 172 LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPT--DERLVTVEDVHEMFLNHHPNKVHLFY 229
L HG+ L+ G TGSGKTT S+ + +VT+ED E
Sbjct: 133 LKHSHGM-LIFTGPTGSGKTTTLYSLVQYAKKHFNRNIVTLEDPVE-------------- 177
Query: 230 SRDGEG-SLSINPKQAIA------SCLRMKPDRILLTEMRGDEAWEF-VKAVGSGHPGIS 281
+RD + + +N K + + LR PD I+L E+R E E V+A +GH ++
Sbjct: 178 TRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLT 237
Query: 282 TAHAGGALEAFDQIV 296
+ H A A +++
Sbjct: 238 SLHTRDAKGAIYRLL 252
>gi|4981025|gb|AAD35598.1|AE001727_10 (AE001727) comM protein
[Thermotoga maritima]
Length = 501
Score = 37.9 bits (86), Expect = 0.13
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 126 DKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGK 185
D+TL +E G +EN + YE++ ++ +K +++A+ +++VG
Sbjct: 171 DRTLKRIEYSG----IENTNLE-----YEIDFSDVRDHEMVKRAVEIAVAGFHNILMVGN 221
Query: 186 TGSGKTTIGKSITNCIP--TDERLVTVEDVH 214
GSGKT I K I P ++E ++ V+
Sbjct: 222 PGSGKTMIAKRIPTIFPPMSEEEILETSKVY 252
>gi|2649127 (AE001004) conserved hypothetical protein [Archaeoglobus
fulgidus]
Length = 495
Score = 37.1 bits (84), Expect = 0.22
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 4/53 (7%)
Query: 150 LHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
L P+E E++ +K KE +K A+ G ++ GK G GKTT K+I+ +P
Sbjct: 78 LDPFE-EIIGKEKE---KEMVKTALMSGSNILFKGKKGYGKTTFSKAISKLLP 126
>gi|2687342|emb|CAA15883| (AL020958) glutamate uptake system
ATP-binding protein [Streptomyces coelicolor]
Length = 258
Score = 37.1 bits (84), Expect = 0.22
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 156 ELLALKKSNR------IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVT 209
EL+ LK N+ + + + L +Q G +V++G +GSGK+T+ ++I D+ +T
Sbjct: 16 ELVVLKSVNKHFGALHVLQDIDLTIQRGEVVVVIGPSGSGKSTLCRTINRLETVDDGSIT 75
Query: 210 VE 211
++
Sbjct: 76 ID 77
>gi|3860666|emb|CAA14567| (AJ235270) POSSIBLE RIBONUCLEOTIDE
TRANSPORT ATP-BINDING PROTEIN MKL (mkl) [Rickettsia
prowazekii]
Length = 252
Score = 37.1 bits (84), Expect = 0.22
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 149 TLHPYEVELLALKKS---NRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE 205
T +++++ +L KS +++ + + L ++ G +LVI+G +GSGK+ + KSI I D+
Sbjct: 3 TKEEFKIKIRSLYKSFAHHKVLDGIDLDVKKGSSLVILGGSGSGKSVLIKSIVGLIKPDK 62
Query: 206 RLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSL 237
+ ++++ +++ H F G G L
Sbjct: 63 GQIFIDNLEIQDISN----THKFEIMKGVGFL 90
>gi|6513866|gb|AAF14817.1| (AF000001) PilQ [Salmonella typhi]
Length = 567
Score = 37.1 bits (84), Expect = 0.22
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 134 AEGAFDQVENVDASGTLHPYEVELLALKKSNR-IKEFLKLAMQHGLTLVIVGKTGSGKTT 192
A+G + + G + P +L L K R IK L+L G+ +++ G TG+GK+T
Sbjct: 182 ADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLP--EGM-IILSGPTGAGKST 238
Query: 193 IGKSITNCIPT----DERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASC 248
++ ++ +RL+TVED E + + + + E + + ++ + S
Sbjct: 239 TLRACSDLYLKRTRYKKRLLTVEDPPEGRIVG-AIQTPIICDKADEAEVRLAWQRVLTSA 297
Query: 249 LRMKPDRILLTEMRG-DEAWEFVKAVGSGHPGISTAHAGGALEAFDQIVAL 298
LR+ PD IL E+R + A +GH +ST H+ A ++++ +
Sbjct: 298 LRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITM 348
>gi|6459749|gb|AAF11514.1|AE002034_7 (AE002034) general secretion
pathway protein E [Deinococcus radiodurans]
Length = 846
Score = 36.7 bits (83), Expect = 0.29
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 154 EVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKT-TIGKSITNCIPTDERLVTVED 212
E+E L + N + + +G+ LV G TGSGK+ T ++ ++ T+ED
Sbjct: 575 ELEQLGFSEYNYARYTEIIERPNGIFLV-TGPTGSGKSFTCFSTLKRIAKPEKNTTTIED 633
Query: 213 VHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEF-VK 271
E +V S + +A+ + LR PD I + E+R E + V+
Sbjct: 634 PIEY-------EVPGIVQSQVNNSTGMTFARALRAFLRQDPDIIFVGEIRDQETAKIAVE 686
Query: 272 AVGSGHPGISTAHAGGA 288
A +GH ++T H A
Sbjct: 687 AALTGHMVLATLHTNDA 703
>gi|6759908|gb|AAF28101.1|AF148682_1 (AF148682) oligopeptide
permease F protein [Brucella abortus]
Length = 243
Score = 36.7 bits (83), Expect = 0.29
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 170 LKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
+ L ++ G T+ IVG++GSGK+T+G++I I ++ R+
Sbjct: 10 VSLTLKEGQTIGIVGESGSGKSTLGRAILRLIESEGRI 47
>gi|5458263|emb|CAB49752.1| (AJ248285) type II secretion system
protein, putative [Pyrococcus abyssi]
Length = 193
Score = 36.4 bits (82), Expect = 0.38
Identities = 30/116 (25%), Positives = 56/116 (47%), Gaps = 2/116 (1%)
Query: 168 EFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHL 227
E LK A++ ++IVG T +GKT + +++ IP D ++ V +E F N +
Sbjct: 23 ELLKDAIEKKADILIVGGTRAGKTKLVEALVFLIPDDWKVAVVTAYNE-FKPFKENIQVI 81
Query: 228 FYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGHPGISTA 283
DG SL ++ I + R+ PD +++ + + E ++ + H I T+
Sbjct: 82 NTEFDGR-SLDKRTEEVIDAIQRINPDYVIIDTIHTVKVSEMLRRLIDKHGFIVTS 136
>gi|4980785|gb|AAD35375.1|AE001710_10 (AE001710) ABC transporter,
ATP-binding protein [Thermotoga maritima]
Length = 577
Score = 36.0 bits (81), Expect = 0.50
Identities = 20/103 (19%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 115 VSITIRKPSMVDKTLDELEAEGAFDQVENV----DASGTLHPYEVELLALKKSNRIKEFL 170
++ +R + + L+ L + A ++ +N + G++ VE + ++ + +
Sbjct: 293 LNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGV 352
Query: 171 KLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDV 213
+++ G + ++G+TGSGK+T+ I I + V V+++
Sbjct: 353 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 395
>gi|4980994|gb|AAD35568.1|AE001726_2 (AE001726) ABC transporter,
ATP-binding protein [Thermotoga maritima]
Length = 235
Score = 36.0 bits (81), Expect = 0.50
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 168 EFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHL 227
E L L +Q G L +VG +G GKTT+ K+I IP + ++ ++ L + P K L
Sbjct: 18 EDLSLEVQRGEILSLVGPSGCGKTTVVKAILGLIPYEGKI----EIFTSRLGYCPQKDVL 73
Query: 228 F 228
F
Sbjct: 74 F 74
>gi|1947137 (AF000264) similar to the ATP-binding transport protein
family (ABC transporters). [Caenorhabditis elegans]
Length = 761
Score = 36.0 bits (81), Expect = 0.50
Identities = 19/60 (31%), Positives = 35/60 (57%)
Query: 161 KKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNH 220
+ +N + + L L+++ G T+ +VG +G GK++I I + DE VT++ V +NH
Sbjct: 526 RPNNPVLKDLTLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSVTLDGVPIKDINH 585
>gi|2909592|emb|CAA17316| (AL021928) hypothetical protein Rv0194
[Mycobacterium tuberculosis]
Length = 1194
Score = 36.0 bits (81), Expect = 0.50
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 170 LKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTV--EDVHEMFLN 219
+ L+++ G TL +VG GSGK+T+ T C + V + +DV E+ L+
Sbjct: 353 ISLSVRAGETLAVVGAPGSGKSTLASLATRCYDVTQGAVRIGGQDVRELTLD 404
Score = 31.7 bits (70), Expect = 9.8
Identities = 27/85 (31%), Positives = 42/85 (48%), Gaps = 8/85 (9%)
Query: 148 GTLHPYEVELLALKKSNRIKEF-----LKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
GTL EV A+ S R +E + L + G T+V VG TGSGK+T+ K +
Sbjct: 936 GTLRG-EVVFDAVHYSYRTREVPALAGINLRIPAGQTVVFVGSTGSGKSTLIKLVARFYD 994
Query: 203 TDERLVTVE--DVHEMFLNHHPNKV 225
V V+ D+ E ++ + N++
Sbjct: 995 PTHGTVRVDGCDLREFDVDGYRNRL 1019
>gi|3257731|dbj|BAA30414| (AP000006) 193aa long hypothetical protein
[Pyrococcus horikoshii]
Length = 193
Score = 36.0 bits (81), Expect = 0.50
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 168 EFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHL 227
+ L+ A+ +VIVG T +GKT + +++T IP + R+ + +E + +
Sbjct: 23 DILRKAIMEKKDIVIVGGTRTGKTKLIEALTFLIPENWRIAVITAYNE--FKPFKENIRV 80
Query: 228 FYSRDGEGSLSINPKQAIASCLRMKPDRILL 258
+ E SL + I+ R+ PD +++
Sbjct: 81 INTEFDERSLGQRTEDVISEISRIDPDYVII 111
>gi|3328607|gb|AAC67793.1| (AE001293) Oligopeptide Transport ATPase
[Chlamydia trachomatis]
Length = 277
Score = 35.6 bits (80), Expect = 0.66
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 157 LLALKKSN-RIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
++++K SN R+ L L ++ ++ +VG+ GSGKTT+ K++ +P
Sbjct: 12 VVSVKDSNQRLVNHLSLTIKRCQSMALVGENGSGKTTVSKAVLGFLP 58
>gi|1653498|dbj|BAA18411| (D90914) ABC transporter [Synechocystis
sp.]
Length = 636
Score = 35.2 bits (79), Expect = 0.86
Identities = 29/109 (26%), Positives = 45/109 (40%), Gaps = 14/109 (12%)
Query: 155 VELLALKKSNRIKEFLK---LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE 211
VEL + K K+ +K G + IVGK G GK+T+ IT + D+ V +
Sbjct: 319 VELENISKGFENKQLIKDFSYIFTPGDRVGIVGKNGVGKSTLMNMITGRLEPDQGTVDI- 377
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTE 260
+ +H Y LS+NP Q + L+ + I T+
Sbjct: 378 ----------GSTIHFGYFDQHSDDLSLNPNQRVIDYLKSVAELIKTTD 416
>gi|1698599 (U62129) ATP binding cassette (ABC) transporter homolog
[Salmonella typhi]
Length = 1218
Score = 35.2 bits (79), Expect = 0.86
Identities = 45/196 (22%), Positives = 84/196 (41%), Gaps = 23/196 (11%)
Query: 16 GRSSEMLAEYMEPLRAFLDDTSLNEICVNRPSEV-WTEGRNGWQRFDVPCLTFSHCCKLA 74
G +S+ LA E +R L+ S+ + CV E W +G++ S A
Sbjct: 193 GLASDRLAHMTEHMREVLEQISVVKSCVAELRETRWLDGQSRQMVRVRIGAAISQAMPGA 252
Query: 75 TLIA----------SYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVS----ITIR 120
T++A Y G S+ + L + + + ++ P TR ++ I R
Sbjct: 253 TMLALPVIGQIVLLCYGGWSVMNGRIDLGTFVAFASFLAMLTGP---TRVLASFLVIAQR 309
Query: 121 KPSMVDKTLDELEAEGAF-DQVENVDASGTLHPYEVELLALK--KSNRIKEFLKLAMQHG 177
+ V++ ++ D E+V+ G + +VE ++ NRI + ++ G
Sbjct: 310 TQASVERVFALIDTRSRMEDGTESVE--GQIIGLDVEKMSFHYDNGNRILNEISFSIHAG 367
Query: 178 LTLVIVGKTGSGKTTI 193
T+ +VG +GSGK+T+
Sbjct: 368 ETVAVVGASGSGKSTL 383
>gi|2226166|emb|CAA74450.1| (Y14080) hypothetical protein [Bacillus
subtilis] >gi|2633306|emb|CAB12810| (Z99109) similar to
ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 585
Score = 35.2 bits (79), Expect = 0.86
Identities = 18/44 (40%), Positives = 24/44 (53%)
Query: 170 LKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDV 213
+ ++ G T+ I GKTGSGKTTI K + P E +T V
Sbjct: 357 ISFTVRKGQTVGIAGKTGSGKTTIIKQLLRQYPPGEGSITFSGV 400
>gi|432992 (U03771) potential ATP-binding membrane transport protein
[Streptomyces coelicolor]
Length = 636
Score = 34.8 bits (78), Expect = 1.1
Identities = 31/133 (23%), Positives = 60/133 (44%), Gaps = 11/133 (8%)
Query: 152 PYEVELLALKKSNRIKEFLK---LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLV 208
P E+ L ++ +E L+ + + G T+ +VG++G+GK+ + I DE V
Sbjct: 351 PGELRLCGVRVLRGGREVLRAGGVRVPGGSTVAVVGRSGAGKSVLAAVAGRLIDPDEGYV 410
Query: 209 TVEDVHEMFLNHHPNKVHLFYSRD----GEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
++ V L H + + Y+ + GEG+++ +A+A R + R
Sbjct: 411 LLDGVRLDRLTHEALRTEVAYAFERPVLGEGTIA----EAVADGARRSSRERVRQAARAA 466
Query: 265 EAWEFVKAVGSGH 277
A FV+ + G+
Sbjct: 467 GADGFVRRLPHGY 479
>gi|2665715|gb|AAB88475| (AF035413) MoaD [Agrobacterium tumefaciens]
Length = 588
Score = 34.8 bits (78), Expect = 1.1
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 168 EFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
E A+ G TL +VG++GSGK+TIGK+I + P
Sbjct: 314 EKASFAIGKGETLGLVGESGSGKSTIGKAIIDLAP 348
>gi|3334814|emb|CAA19962| (AL031107) putative ABC transporter
[Streptomyces coelicolor]
Length = 636
Score = 34.8 bits (78), Expect = 1.1
Identities = 31/133 (23%), Positives = 60/133 (44%), Gaps = 11/133 (8%)
Query: 152 PYEVELLALKKSNRIKEFLK---LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLV 208
P E+ L ++ +E L+ + + G T+ +VG++G+GK+ + I DE V
Sbjct: 351 PGELRLCGVRVLRGGREVLRADGVRVPGGSTVAVVGRSGAGKSVLAAVAGRLIDPDEGYV 410
Query: 209 TVEDVHEMFLNHHPNKVHLFYSRD----GEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
++ V L H + + Y+ + GEG+++ +A+A R + R
Sbjct: 411 LLDGVRLDRLTHEALRTEVAYAFERPVLGEGTIA----EAVADGARRSSRERVRQAARAA 466
Query: 265 EAWEFVKAVGSGH 277
A FV+ + G+
Sbjct: 467 GADGFVRRLPHGY 479
>gi|2492566|sp|Q57335|Y036_HAEIN HYPOTHETICAL ABC TRANSPORTER
ATP-BINDING PROTEIN HI0036 >gi|1075044|pir||D64044
multidrug resistance protein (mdl) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1572982 (U32689) ABC
transporter, ATP-binding protein [Haemophilus influenzae
Rd]
Length = 592
Score = 34.4 bits (77), Expect = 1.5
Identities = 21/76 (27%), Positives = 38/76 (49%), Gaps = 4/76 (5%)
Query: 151 HPYEVELLALKKSNRIK----EFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDER 206
HP +V L N + + L + + G +L+I GK+G+GKTT+ ++I E
Sbjct: 387 HPTDVIFKNLSIQNPLGHTLIKHLNITLPQGTSLLIQGKSGAGKTTLLRTIAGLWSYAEG 446
Query: 207 LVTVEDVHEMFLNHHP 222
+ +++FL+ P
Sbjct: 447 EINCPTHNQLFLSQKP 462
>gi|2984331 (AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 34.4 bits (77), Expect = 1.5
Identities = 21/47 (44%), Positives = 32/47 (67%), Gaps = 3/47 (6%)
Query: 153 YEVELLALKKSN--RIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSI 197
Y+V L+K N +KE + L+++ G L IVG++GSGK+T+GK I
Sbjct: 13 YKVPAGFLRKKNFFALKE-VSLSIKQGDFLAIVGESGSGKSTLGKII 58
>gi|6136567|sp|O83681|Y675_TREPA HYPOTHETICAL PROTEIN TP0675
>gi|3322985 (AE001242) T. pallidum predicted coding
region TP0675 [Treponema pallidum]
Length = 332
Score = 34.4 bits (77), Expect = 1.5
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 139 DQVENVDASGTLHP-YEVELLALKKSNRIKEFLKLAMQHGLTLV 181
D + DA+G LH Y E+ A +++ +EF +L++QHG+T V
Sbjct: 265 DALVTKDAAGGLHRRYVAEIAASRRAAWAEEFYRLSLQHGITFV 308
>gi|4376472|gb|AAD18354| (AE001606) Oligopeptide Transport ATPase
[Chlamydia pneumoniae]
Length = 284
Score = 34.4 bits (77), Expect = 1.5
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 168 EFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
E L L ++ L +VG++GSGKTTI K+I +P
Sbjct: 24 ENLSLQLKENRNLALVGESGSGKTTITKAILGFLP 58
>gi|6288773|gb|AAF06736.1| (AF167431) sulfonyl urea receptor
[Drosophila melanogaster]
Length = 2173
Score = 34.4 bits (77), Expect = 1.5
Identities = 25/90 (27%), Positives = 40/90 (43%), Gaps = 9/90 (10%)
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
G +H V L + + L L + G + I G+TGSGK+++G S+ + T
Sbjct: 1930 GDIHFDNVSLRYEGQKQNVISNLTLKIPAGQRIGICGRTGSGKSSLGLSLFGVLQTTRGH 1989
Query: 208 VTVEDVH---------EMFLNHHPNKVHLF 228
+ ++DV L+ P VHLF
Sbjct: 1990 IYIDDVDIQRIRPDELRTRLSIIPQDVHLF 2019
>gi|6689164|emb|CAB65561.1| (AL136058) probable amino acid ABC
transporter protein, ATP-binding component.
[Streptomyces coelicolor A3(2)]
Length = 261
Score = 34.4 bits (77), Expect = 1.5
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 164 NRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE 211
N + + L ++ G + ++G +GSGKTTI + + + DE +TV+
Sbjct: 33 NTVLDHLDFSVDAGKHVTLIGPSGSGKTTILRLLMTLLKPDEGTITVD 80
>gi|1172056|sp|P45677|PEBC_CAMJE PROBABLE ABC TRANSPORTER
ATP-BINDING PROTEIN PEB1C >gi|1072932|pir||C48518 PEB1
5'-region hypothetical protein C - Campylobacter jejuni
>gi|388564 (L13662) major cell-binding factor receptor
[Campylobacter jejuni]
Length = 242
Score = 34.0 bits (76), Expect = 1.9
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 163 SNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHP 222
++ + + L+++ G LVI+G +GSGK+T C+ E + + E V + +H
Sbjct: 13 THHVLKIFNLSVKEGEKLVIIGPSGSGKST----TIRCMNGLEEVSSGEVVVNNLVLNHK 68
Query: 223 NKVHLF--YSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE--AWEFVKAVG 274
NK+ + Y ++ P + L + P ++ + E A++++K VG
Sbjct: 69 NKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPMKLQKKSKKEAEETAFKYLKVVG 124
>gi|238466|bbs|63859 (S63858) orf 5' of rpoN [Rhizobium, NGR234,
Peptide, 270 aa] [Rhizobium] >gi|228369|prf||1803249A
rpoN upstream ORF 1 [Rhizobium sp.]
Length = 270
Score = 34.0 bits (76), Expect = 1.9
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 162 KSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTV 210
+S R+ + L ++ G + ++G G+GKTT IT +P DE + +
Sbjct: 44 RSRRVVNGVSLVVRRGEAVGLLGPNGAGKTTCFYMITGLVPVDEGSIEI 92
>gi|541190|pir||B49454 transporter ATP-binding cassette homolog SurB
- Escherichia coli >gi|413849 (L25859) also called cydC
in [5] and mdrH in [4] [Escherichia coli]
>gi|739461|prf||2003283B surB protein [Escherichia coli]
Length = 573
Score = 34.0 bits (76), Expect = 1.9
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 154 EVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDV 213
+V+ ++S + + + L + G + I+G+TG GK+T+ + +T + + + D
Sbjct: 343 DVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDS 402
Query: 214 HEMFLNHH---------PNKVHLFYSRDGEGSLSINP---KQAIASCLRMKPDRILLTEM 261
LN P +VHLF + + L +P +A++ LR LL E
Sbjct: 403 PIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLL-ED 461
Query: 262 RGDEAW--EFVKAVGSGHPG 279
G +W E + + G PG
Sbjct: 462 AGLNSWLGEGGRQLSGGEPG 481
>gi|141100|sp|P25885|YHBG_RHIME PROBABLE ABC TRANSPORTER ATP-BINDING
PROTEIN IN NTRA/RPON 5'REGION >gi|95203|pir||B32835
hypothetical ntrA protein 2 (ntrA 5' region) - Rhizobium
meliloti >gi|511887 (M24926) ATP-binding protein
[Rhizobium meliloti]
Length = 270
Score = 34.0 bits (76), Expect = 1.9
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 162 KSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTV 210
+S R+ + L ++ G + ++G G+GKTT IT +P DE + +
Sbjct: 44 RSRRVVNGVSLVVRRGEAVGLLGPNGAGKTTCFYMITGLVPVDEGSIEI 92
>gi|1001150|dbj|BAA10292| (D64001) general secretion pathway protein
E [Synechocystis sp.]
Length = 672
Score = 34.0 bits (76), Expect = 1.9
Identities = 39/128 (30%), Positives = 58/128 (44%), Gaps = 13/128 (10%)
Query: 173 AMQHGLTLVIVGKTGSGK-TTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSR 231
A +GL LV G TGSGK TT+ + + + T ED E L P + R
Sbjct: 365 ARPYGLMLV-TGPTGSGKSTTLYSVLAERNSPEVNINTAEDPIEYAL---PGITQVQVIR 420
Query: 232 DGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE-AWEFVKAVGSGHPGISTAH---AGG 287
+ S + + +R PD IL+ E R E A ++A +GH ++T H A G
Sbjct: 421 EKGMDFS----NILRAFMRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAAG 476
Query: 288 ALEAFDQI 295
A+ D++
Sbjct: 477 AIARLDEM 484
>gi|2506114|sp|P37774|YECC_ECOLI HYPOTHETICAL AMINO-ACID ABC
TRANSPORTER ATP-BINDING PROTEIN YECC
>gi|1736576|dbj|BAA15737| (D90832) ORF_ID:o341#14;
similar to [SwissProt Accession Number P37774]
[Escherichia coli] >gi|1788225 (AE000284) putative
ATP-binding component of a transport system [Escherichia
coli]
Length = 250
Score = 34.0 bits (76), Expect = 1.9
Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 8/63 (12%)
Query: 159 ALKKSNRIKEFLKLAMQHGLTL--------VIVGKTGSGKTTIGKSITNCIPTDERLVTV 210
A++ N +K+F + HG+ L I+G +GSGKTT+ +SI + +TV
Sbjct: 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTITV 62
Query: 211 EDV 213
D+
Sbjct: 63 GDI 65
>gi|2058544 (U81957) putative ABC transporter subunit ComYA
[Streptococcus gordonii]
Length = 319
Score = 34.0 bits (76), Expect = 1.9
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 184 GKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQ 243
G GSGKTT+ + ++++++ED E+ K ++ + +
Sbjct: 138 GPVGSGKTTLMHQLAQLKFKGQQVMSIEDPVEI-------KQEDMLQLQLNETIGLTYES 190
Query: 244 AIASCLRMKPDRILLTEMRGDE-AWEFVKAVGSGHPGISTAHAGGALEAFDQIVAL 298
I LR +PD +++ E+R E A V+A +G ST HA +++++ L
Sbjct: 191 LIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIPGVYERLLEL 246
>gi|4928927|gb|AAD33775.1|AF139177_2 (AF139177) putative ATP binding
membrane translocator [Streptomyces lividans]
Length = 615
Score = 34.0 bits (76), Expect = 1.9
Identities = 31/133 (23%), Positives = 60/133 (44%), Gaps = 11/133 (8%)
Query: 152 PYEVELLALKKSNRIKEFLK---LAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLV 208
P E+ L ++ +E L+ + + G T+ +VG++G+GK+ + I DE V
Sbjct: 324 PGELRLCGVRVLRGGREVLRADGVRVPGGSTVAVVGRSGAGKSVLAAVAGRLIDPDEGHV 383
Query: 209 TVEDVHEMFLNHHPNKVHLFYSRD----GEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
++ V L H + + Y+ + GEG+++ +A+A R + R
Sbjct: 384 LLDGVRLDRLTHEALRTEVAYAFERPVLGEGTIA----EAVADGARRSSRERVRQAARAA 439
Query: 265 EAWEFVKAVGSGH 277
A FV+ + G+
Sbjct: 440 GADGFVRRLPHGY 452
>gi|6644386|gb|AAF21041.1|AF210453_1 (AF210453) dynein heavy chain
[Drosophila melanogaster]
Length = 4559
Score = 34.0 bits (76), Expect = 1.9
Identities = 15/58 (25%), Positives = 34/58 (57%)
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVT 209
P + L+ ++ R++ F+ ++ L+++G +GSGKT + + + +P+D+ VT
Sbjct: 2517 PLQSNLVNTAETTRLRFFMDTLIEADHPLMLIGPSGSGKTILMNAKLSALPSDKYSVT 2574
>gi|477578|pir||A49227 sialidase - Actinomyces viscosus >gi|141852
(L06898) sialidase [Actinomyces viscosus]
Length = 901
Score = 33.6 bits (75), Expect = 2.5
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 8/81 (9%)
Query: 80 YNGKSITANKPVLSAALPGGA---RVQVVIPPACETR-----TVSITIRKPSMVDKTLDE 131
Y GK+++ + + A P A RV+ + P + + TVS T+R S+ DKT++
Sbjct: 139 YAGKALSTPETIKGATSPVKANSLRVESITPSSSQENYKLGDTVSYTVRVRSVSDKTINV 198
Query: 132 LEAEGAFDQVENVDASGTLHP 152
E +FD + G L P
Sbjct: 199 AATESSFDDLGRQCHWGGLKP 219
>gi|98701|pir||S20590 exo-alpha-sialidase (EC 3.2.1.18) -
Actinomyces viscosus >gi|39255|emb|CAA44166| (X62276)
sialidase [Actinomyces viscosus]
Length = 913
Score = 33.6 bits (75), Expect = 2.5
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 8/81 (9%)
Query: 80 YNGKSITANKPVLSAALPGGA---RVQVVIPPACETR-----TVSITIRKPSMVDKTLDE 131
Y GK+++ + + A P A RV+ + P + + TVS T+R S+ DKT++
Sbjct: 139 YAGKALSTPETIKGATSPVKANSLRVESITPSSSQENYKLGDTVSYTVRVRSVSDKTINV 198
Query: 132 LEAEGAFDQVENVDASGTLHP 152
E +FD + G L P
Sbjct: 199 AATESSFDDLGRQCHWGGLKP 219
>gi|1169418|sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING
PROTEIN DPPF >gi|1074010|pir||E64188 dipeptide transport
ATP-binding protein (dppF) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|972898 (U17295) DppF
[Haemophilus influenzae] >gi|1574111 (U32798) dipeptide
ABC transporter, ATP-binding protein (dppF) [Haemophilus
influenzae Rd]
Length = 327
Score = 33.6 bits (75), Expect = 2.5
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 151 HPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSIT 198
+P + L A + + + + ++ G TL +VG++G GK+T+G+ +T
Sbjct: 21 YPVKKGLFAKPQQVKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLT 68
>gi|1296822|emb|CAA91229| (Z56283) orf1 [Lactobacillus helveticus]
Length = 444
Score = 33.6 bits (75), Expect = 2.5
Identities = 25/114 (21%), Positives = 56/114 (48%), Gaps = 4/114 (3%)
Query: 153 YEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE- 211
+E+ +K++ + + KL + +G T +I G G GKT++ K++T IP ++
Sbjct: 233 FELNKTQIKQNRLLLKQNKLKI-YGKTTLITGSNGVGKTSLFKAMTKMIPYKGNFTYLDN 291
Query: 212 DVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE 265
++ ++ + +++ F+ + + L++ K I L K T+ + DE
Sbjct: 292 EISKIKYRKYLSQIAQFFQKASDQFLTVTVKDEIE--LSKKDRNNFFTDAKIDE 343
>gi|2258373|gb|AAD11907.1| (AF007261) ATP-binding subunit of ABC
transporter for cytochrome c1 [Reclinomonas americana]
Length = 222
Score = 33.6 bits (75), Expect = 2.5
Identities = 18/73 (24%), Positives = 38/73 (51%), Gaps = 3/73 (4%)
Query: 157 LLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEM 216
+ ++ + I + + +++ G +I G GSGKTT+ K I+ +P + + ++
Sbjct: 14 ITGIRSNKIIFQNINFSLEKGSLFIIQGSNGSGKTTLLKIISGLLPKSQGDII---INNN 70
Query: 217 FLNHHPNKVHLFY 229
F++ + K LFY
Sbjct: 71 FISENYLKDSLFY 83
>gi|3116137|emb|CAA18886.1| (AL023288) AAA family ATPase
[Schizosaccharomyces pombe]
Length = 809
Score = 33.6 bits (75), Expect = 2.5
Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 20/182 (10%)
Query: 44 NRPSEVWTEGRNGWQRFDVP--CLTFSHCCKLATLIAS--------------YNGKSITA 87
+R + +G Q FD P +TFS L IA + +I
Sbjct: 253 DRTQSAYNQGSEETQNFDGPPSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMP 312
Query: 88 NKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEA--EGAFDQVENVD 145
+ VL PG + V+ A E TI PS+V K L E E+ F+
Sbjct: 313 PRGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQ 372
Query: 146 ASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE 205
S + E++ LA K++ + E A+ LTL + G +GK + + DE
Sbjct: 373 PS-IIFIDEIDALAPKRTEDVSEAESRAVATLLTL-LDGMANAGKVVVIAATNRPNSIDE 430
Query: 206 RL 207
L
Sbjct: 431 AL 432
>gi|3256912|dbj|BAA29595| (AP000002) 321aa long hypothetical
oligopeptide transport ATP-binding protein AppF
[Pyrococcus horikoshii]
Length = 321
Score = 33.6 bits (75), Expect = 2.5
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 10/71 (14%)
Query: 139 DQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSIT 198
+ V V SG YEV R + + + G + ++G++GSGKTTIGK I
Sbjct: 8 EHVTKVFTSGLFGGYEV---------RAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLIL 58
Query: 199 NCI-PTDERLV 208
+ PT R++
Sbjct: 59 RLLKPTSGRIL 69
>gi|6459843|gb|AAF11601.1|AE002041_5 (AE002041) ABC transporter,
ATP-binding protein, MDR family [Deinococcus
radiodurans]
Length = 677
Score = 33.6 bits (75), Expect = 2.5
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 165 RIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE--DVHEMFLNH 220
++ + + L + G L I G TGSGKT +G+ IT + E ++ ++ D+ + L H
Sbjct: 412 QVLDHINLHIPAGTFLGITGPTGSGKTVLGQLITRSMDPTEGVIRIDGHDLRTVPLEH 469
>gi|6968359|emb|CAB73179.1| (AL139076) ABC-type amino-acid
transporter ATP-binding protein [Campylobacter jejuni]
Length = 242
Score = 33.6 bits (75), Expect = 2.5
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 163 SNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHP 222
++ + + + L+++ G LVI+G +GSGK+T C+ E + + E V + +H
Sbjct: 13 THHVLKNINLSVKEGEKLVIIGPSGSGKST----TIRCMNGLEEVSSGEVVVNNLVLNHK 68
Query: 223 NKVHLF--YSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGDE--AWEFVKAVG 274
NK+ + Y ++ P + L + P ++ + E A++++K VG
Sbjct: 69 NKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPMKLQKKSKKEAEETAFKYLKVVG 124
>gi|585069|sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING
PROTEIN DPPF >gi|1073370|pir||S47762 dppF protein -
Escherichia coli >gi|466679 (U00039) was dppE
[Escherichia coli] >gi|1789962 (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli]
Length = 334
Score = 33.2 bits (74), Expect = 3.3
Identities = 32/134 (23%), Positives = 64/134 (46%), Gaps = 16/134 (11%)
Query: 151 HPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNC-IPTDERLVT 209
+P + + A ++ + + + ++ G TL +VG++G GK+T+G+ +T +PT L
Sbjct: 22 YPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYY 81
Query: 210 VEDVHEMFLNHHP-------NKVHLFYSRDGEGSLSINPKQAIASCLR--MKPDRILLTE 260
+ L H P K+ + + ++ GSL NP++ + L + + L E
Sbjct: 82 ---QGQDLLKHDPQAQKLRRQKIQIVF-QNPYGSL--NPRKKVGQILEEPLLINTSLSKE 135
Query: 261 MRGDEAWEFVKAVG 274
R ++A + VG
Sbjct: 136 QRREKALSMMAKVG 149
>gi|349229 (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 33.2 bits (74), Expect = 3.3
Identities = 32/134 (23%), Positives = 64/134 (46%), Gaps = 16/134 (11%)
Query: 151 HPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNC-IPTDERLVT 209
+P + + A ++ + + + ++ G TL +VG++G GK+T+G+ +T +PT L
Sbjct: 22 YPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYY 81
Query: 210 VEDVHEMFLNHHP-------NKVHLFYSRDGEGSLSINPKQAIASCLR--MKPDRILLTE 260
+ L H P K+ + + ++ GSL NP++ + L + + L E
Sbjct: 82 ---QGQDLLKHDPQAQKLRRQKIQIVF-QNPYGSL--NPRKKVGQILEEPLLINTSLSKE 135
Query: 261 MRGDEAWEFVKAVG 274
R ++A + VG
Sbjct: 136 QRREKALSMMAKVG 149
>gi|1652125|dbj|BAA17050| (D90902) ABC transporter [Synechocystis
sp.]
Length = 260
Score = 33.2 bits (74), Expect = 3.3
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 155 VELLALKKS---NRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE 211
++L + KS +I + + L + G LV++G +G+GK+TI + I +P D V ++
Sbjct: 6 IQLRGISKSFGDRQILDSVDLDLYPGEALVVIGPSGTGKSTILRIIAGLLPPDSGEVLIK 65
>gi|2341015|gb|AAB67603.1| (AC002486) multidrug resistance protein
(P-glycoprotein); 60-70% similarity to P06795
(PID:g126927) [Homo sapiens]
Length = 469
Score = 33.2 bits (74), Expect = 3.3
Identities = 17/67 (25%), Positives = 37/67 (54%), Gaps = 2/67 (2%)
Query: 161 KKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE--DVHEMFL 218
+ S +I + L L ++ G T+ +VG GSGK+T+ + + D+ + V+ D+ + +
Sbjct: 298 RPSIKILKGLNLRIKSGETVALVGLNGSGKSTVVQLLQRLYDPDDGFIMVDENDIRALNV 357
Query: 219 NHHPNKV 225
H+ + +
Sbjct: 358 RHYRDHI 364
>gi|2648948 (AE000991) spermidine/putrescine ABC transporter,
ATP-binding protein (potA) [Archaeoglobus fulgidus]
Length = 345
Score = 33.2 bits (74), Expect = 3.3
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 153 YEVELLALKKS---NRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVT 209
Y VEL + KS + E + L +Q G ++G +GSGKTTI + I D+ V
Sbjct: 4 YAVELEGISKSYDSTTVLEDINLRIQQGEFFSLLGPSGSGKTTIIRIIAGLTFPDQGFVR 63
Query: 210 V 210
+
Sbjct: 64 I 64
>gi|2773332 (AF040718) ABC transporter CydC [Shigella flexneri]
Length = 573
Score = 33.2 bits (74), Expect = 3.3
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 154 EVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDV 213
+V+ ++S + + + L + G + I+G+TG GK+T+ + +T + + + D
Sbjct: 343 DVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDS 402
Query: 214 HEMFLNHH---------PNKVHLFYSRDGEGSLSINP---KQAIASCLRMKPDRILLTEM 261
LN P +VHLF + + L +P +A++ LR LL E
Sbjct: 403 PIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLL-ED 461
Query: 262 RGDEAW--EFVKAVGSGHPG 279
G +W E + + G PG
Sbjct: 462 AGLNSWLGEGGRQLSGGEPG 481
>gi|3603243 (AF031494) Dhc7 [Drosophila hydei]
Length = 4564
Score = 33.2 bits (74), Expect = 3.3
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVT 209
P + L+ ++ R++ F+ ++ L+++G +GSGKT + + +PT++ VT
Sbjct: 2521 PLQSNLVNSAETTRLRFFMDTLIEEDHPLMLIGPSGSGKTILMNAKLTYLPTEKFAVT 2578
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772) oligopeptide ABC
transporter, ATP-binding protein [Thermotoga maritima]
Length = 325
Score = 33.2 bits (74), Expect = 3.3
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNC-IPTDERLV 208
P +V L +K + + + + G +L +VG++GSGKTT G+ I PTD +++
Sbjct: 19 PIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGRVILRLEEPTDGKII 76
>gi|5731362|gb|AAD48883.1| (U52150) ATPase [Vibrio cholerae]
Length = 279
Score = 33.2 bits (74), Expect = 3.3
Identities = 21/69 (30%), Positives = 38/69 (54%), Gaps = 3/69 (4%)
Query: 151 HPYEVELLALKKSNR-IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP--TDERL 207
H + E L+L + + + L LA+ HG VIVG G GK+T+ KS+ + + L
Sbjct: 19 HRLKTERLSLGYEGKSVCDALDLAIPHGKFSVIVGPNGCGKSTLLKSLCRLLKPLAGQVL 78
Query: 208 VTVEDVHEM 216
+ +++H++
Sbjct: 79 LDGQNIHQL 87
>gi|266795|sp|P12539|PIV2_ADEM1 MATURATION PROTEIN (PROTEIN IVA2)
Length = 449
Score = 32.8 bits (73), Expect = 4.3
Identities = 36/146 (24%), Positives = 66/146 (44%), Gaps = 13/146 (8%)
Query: 121 KPSMVDKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIK------EFLKLAM 174
KP M +T+++L A ++ + H YE+ +L + + E L ++
Sbjct: 105 KPLMNFETVEDLAALAGKGLLQELK-----HDYEILCKSLNSAAPLLSPEGNCESLNYSL 159
Query: 175 QHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGE 234
Q L ++ G TGSGK+ + +++ +C D TV V P ++ + ++ E
Sbjct: 160 QP-LIAIVYGPTGSGKSQLLRNLLSCHLIDPSPETVFFVVPQIDMIPPQEMSAWNAQLVE 218
Query: 235 GSLSINPKQAIA-SCLRMKPDRILLT 259
G+ + P+Q I +KP I LT
Sbjct: 219 GNYTCGPQQTIVPKSGTLKPRLITLT 244
>gi|6446584|ref|NP_015535.1|| IVa2 protein >gi|209754 (M22245) IVa2
protein [Mastadenovirus mus]
Length = 359
Score = 32.8 bits (73), Expect = 4.3
Identities = 36/146 (24%), Positives = 66/146 (44%), Gaps = 13/146 (8%)
Query: 121 KPSMVDKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIK------EFLKLAM 174
KP M +T+++L A ++ + H YE+ +L + + E L ++
Sbjct: 15 KPLMNFETVEDLAALAGKGLLQELK-----HDYEILCKSLNSAAPLLSPEGNCESLNYSL 69
Query: 175 QHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGE 234
Q L ++ G TGSGK+ + +++ +C D TV V P ++ + ++ E
Sbjct: 70 QP-LIAIVYGPTGSGKSQLLRNLLSCHLIDPSPETVFFVVPQIDMIPPQEMSAWNAQLVE 128
Query: 235 GSLSINPKQAIA-SCLRMKPDRILLT 259
G+ + P+Q I +KP I LT
Sbjct: 129 GNYTCGPQQTIVPKSGTLKPRLITLT 154
>gi|2131012|emb|CAB09333| (Z95890) hypothetical protein Rv1747
[Mycobacterium tuberculosis]
Length = 865
Score = 32.8 bits (73), Expect = 4.3
Identities = 40/185 (21%), Positives = 74/185 (39%), Gaps = 16/185 (8%)
Query: 74 ATLIASYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMV--DKTLDE 131
ATL+ + G I N+ + + GARV + + +TI +V D TL
Sbjct: 252 ATLVPTPGGTEIRDNRSI-NGTFVNGARVDAALLHDGDV----VTIGNIDLVFADGTLAR 306
Query: 132 LEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKT 191
E +V +D G + + L + + L + G+ ++G +G+GK+
Sbjct: 307 REENLLETRVGGLDVRGVTWTIDGDKTLL-------DGISLTARPGMLTAVIGPSGAGKS 359
Query: 192 TIGKSITNCIPTDERLVTVE--DVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCL 249
T+ + + + VT E +VH + + + G L++ A+ L
Sbjct: 360 TLARLVAGYTHPTDGTVTFEGHNVHAEYASLRSRIGMVPQDDVVHGQLTVKHALMYAAEL 419
Query: 250 RMKPD 254
R+ PD
Sbjct: 420 RLPPD 424
>gi|2578388|emb|CAA15479.1| (AL008609) ABC-transporter atp-binding
protein [Mycobacterium leprae]
Length = 638
Score = 32.8 bits (73), Expect = 4.3
Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
GT+H VE+ ++ + L L + G +LVI G++G GKTT+ +S+ P
Sbjct: 424 GTVHVVAVEVRT-SAGEQLIDPLDLQLNCGSSLVITGRSGVGKTTMLRSLAELWP 477
>gi|2649165 (AE001007) modification methylase, type III R/M system
[Archaeoglobus fulgidus]
Length = 969
Score = 32.8 bits (73), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 297 ALIKDSATGAHLDAAYIKKRVFETVDIVLYYVHHKLREIYYDPEFKRKQ 345
AL +++ LD IK F ++++L + K++ IY DP F ++Q
Sbjct: 413 ALTRENDLDEILDGVLIKSENFHALNLLLSKYYEKVQTIYIDPPFNKEQ 461
>gi|4587880|gb|AAD25906.1|AF069302_15 (AF069302) ABC transporter
subunit PenL [Pediococcus pentosaceus]
>gi|5091682|gb|AAD39629.1|AF033858_12 (AF033858)
putative ABC transporter ATP-binding subunit
[Pediococcus pentosaceus]
Length = 313
Score = 32.8 bits (73), Expect = 4.3
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 157 LLALKKSNR------IKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTV 210
+L L K N+ + + +++ G L ++G G+GKTTI + IT+ I D +++V
Sbjct: 7 ILTLSKVNKSISQKKVINDVSFSLEKGKILALLGPNGAGKTTIIRLITSLIEQDSGVISV 66
>gi|5824445|emb|CAB54225.1| (AL021446) F14F4.3b [Caenorhabditis
elegans] >gi|5824505|emb|CAB54250.1| (Z83227) F14F4.3b
[Caenorhabditis elegans]
Length = 1427
Score = 32.8 bits (73), Expect = 4.3
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 149 TLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLV 208
T P E E++ ++ F KL+++ G + ++G G GK+ I K+I+ + T + +
Sbjct: 483 TKEPTENEVIVVETPVFTCSFDKLSIKRGEHIAVIGAVGCGKSAILKAISGHMFTTDDAL 542
Query: 209 TVEDVHEMFLNHHPNKVHLF 228
+V+ +++ P K +F
Sbjct: 543 SVDRSQTVYV---PQKAWIF 559
>gi|5824446|emb|CAB54226.1| (AL021446) similar to ABC transporter;
cDNA EST yk330d10.5 comes from this gene; cDNA EST
yk331b3.5 comes from this gene; cDNA EST yk452d6.5 comes
from this gene; cDNA EST yk332f5.5 comes from this gene;
cDNA EST yk247d3.5 co... >gi|5824506|emb|CAB54251.1|
(Z83227) similar to ABC transporter; cDNA EST yk330d10.5
comes from this gene; cDNA EST yk331b3.5 comes from this
gene; cDNA EST yk452d6.5 comes from this gene; cDNA EST
yk332f5.5 comes from this gene; cDNA EST yk247d3.5
come...
Length = 1400
Score = 32.8 bits (73), Expect = 4.3
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 149 TLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLV 208
T P E E++ ++ F KL+++ G + ++G G GK+ I K+I+ + T + +
Sbjct: 483 TKEPTENEVIVVETPVFTCSFDKLSIKRGEHIAVIGAVGCGKSAILKAISGHMFTTDDAL 542
Query: 209 TVEDVHEMFLNHHPNKVHLF 228
+V+ +++ P K +F
Sbjct: 543 SVDRSQTVYV---PQKAWIF 559
>gi|266520|sp|P23886|CYDC_ECOLI TRANSPORT ATP-BINDING PROTEIN CYDC
>gi|625731|pir||B36888 probable transport protein mdrH -
Escherichia coli >gi|145165 (L10383) putative
[Escherichia coli] >gi|1651408|dbj|BAA35611| (D90726)
Probable transport protein mdrH [Escherichia coli]
>gi|1787112 (AE000190) ATP-binding component of
cytochrome-related transport [Escherichia coli]
Length = 573
Score = 32.5 bits (72), Expect = 5.7
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 22/161 (13%)
Query: 154 EVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVEDV 213
+V+ ++S + + + L + G + I+G+TG GK+T+ + +T + + + D
Sbjct: 343 DVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDS 402
Query: 214 HEMFLNHH---------PNKVHLFYSRDGEGSLSINP---KQAIASCLRMKPDRILLTEM 261
LN P +VHLF + + L +P +A++ LR LL E
Sbjct: 403 PIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLL-ED 461
Query: 262 RGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQIVALIKDS 302
G +W +G G +S GG L AL+ D+
Sbjct: 462 AGLNSW-----LGEGGRQLS----GGELRRLAIARALLHDA 493
>gi|729377|sp|P39057|DYHC_ANTCR DYNEIN BETA CHAIN, CILIARY
>gi|85326|pir||S17231 dynein beta heavy chain, ciliary -
sea urchin (Anthocidaris crassispina)
>gi|217203|dbj|BAA00827| (D01021) dynein beta-heavy chain
[Anthocidaris crassispina]
Length = 4466
Score = 32.5 bits (72), Expect = 5.7
Identities = 14/49 (28%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT-IGKSITN 199
P + L+ ++ R++ F+ L M+ G +++VG G GK+ +G ++N
Sbjct: 2428 PMQAVLVHTNETTRVRFFMDLLMERGRPVMLVGNAGLGKSVLVGDKLSN 2476
>gi|157873 (L07065) P-glycoprotein/multidrug resistance protein
[Drosophila melanogaster]
Length = 1283
Score = 32.5 bits (72), Expect = 5.7
Identities = 37/165 (22%), Positives = 71/165 (42%), Gaps = 20/165 (12%)
Query: 120 RKPSMVDK---TLDELEAEG--AFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAM 174
R+PS+VD+ + D +EG FD+V+ +P E+ LK L+LA+
Sbjct: 1019 RQPSIVDRPGVSRDPWHSEGYVRFDKVK------FSYPTRSEIQVLKG-------LELAV 1065
Query: 175 QHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE--DVHEMFLNHHPNKVHLFYSRD 232
G + +VG +G GK+T + I DE ++ DV + + + N++ +
Sbjct: 1066 SKGQKIALVGPSGCGKSTCIQLIQRFYDVDEGATLIDECDVRNVSMTNLRNQLGIVSQEP 1125
Query: 233 GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGH 277
+I + R D+ +++ + EF+ + G+
Sbjct: 1126 ILFDRTIRENISYGDNARNVTDQEIISACKKSNIHEFIANLPLGY 1170
>gi|422052|pir||S35546 ATP-dependent RNA helicase - fission yeast
(Schizosaccharomyces pombe) >gi|218533|dbj|BAA02516.1|
(D13249) ATP-dependent RNA helicase [Schizosaccharomyces
pombe]
Length = 747
Score = 32.5 bits (72), Expect = 5.7
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 81 NGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQ 140
NG SIT K L+ L GG R++ P + R S K S V ++ LE + F
Sbjct: 10 NGGSIT--KQNLTDGLVGGQRIKA--PNKKKNRKASKNTTKKSTVS-VVNFLEQDTDFGA 64
Query: 141 VENVDASGTLHPYEVELLALKKSNRIKEFLKLAM-----------QHGLTLVIVGKTGSG 189
E V + + E K+ + +++ L + Q +V+VG+TGSG
Sbjct: 65 NEVVGSDNSSPEKRSENSPSKRKDILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSG 124
Query: 190 KTT-IGKSITNCIPTDERLVTV 210
K+T I + + C E V +
Sbjct: 125 KSTQIPQFLNECPYAQEGCVAI 146
>gi|227998|prf||1714373A dynein:SUBUNIT=beta heavy chain [Anthocidaris
crassispina]
Length = 4466
Score = 32.5 bits (72), Expect = 5.7
Identities = 14/49 (28%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT-IGKSITN 199
P + L+ ++ R++ F+ L M+ G +++VG G GK+ +G ++N
Sbjct: 2428 PMQAVLVHTNETTRVRFFMDLLMERGRPVMLVGNAGLGKSVLVGDKLSN 2476
>gi|1172616|sp|Q03319|PRH1_SCHPO PROBABLE ATP-DEPENDENT RNA HELICASE
PRH1 >gi|2130463|pir||S62466 PRH1 protein - fission
yeast (Schizosaccharomyces pombe)
>gi|1019409|emb|CAA91176| (Z54354) probable
atp-dependent rna helicase prh1 [Schizosaccharomyces
pombe]
Length = 719
Score = 32.5 bits (72), Expect = 5.7
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 81 NGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQ 140
NG SIT K L+ L GG R++ P + R S K S V ++ LE + F
Sbjct: 10 NGGSIT--KQNLTDGLVGGQRIKA--PNKKKNRKASKNTTKKSTVS-VVNFLEQDTDFGA 64
Query: 141 VENVDASGTLHPYEVELLALKKSNRIKEFLKLAM-----------QHGLTLVIVGKTGSG 189
E V + + E K+ + +++ L + Q +V+VG+TGSG
Sbjct: 65 NEVVGSDNSSPEKRSENSPSKRKDILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSG 124
Query: 190 KTT-IGKSITNCIPTDERLVTV 210
K+T I + + C E V +
Sbjct: 125 KSTQIPQFLNECPYAQEGCVAI 146
>gi|1079107|pir||A47377 multidrug resistance protein Mdr50 - fruit fly
(Drosophila melanogaster)
Length = 1283
Score = 32.5 bits (72), Expect = 5.7
Identities = 37/165 (22%), Positives = 71/165 (42%), Gaps = 20/165 (12%)
Query: 120 RKPSMVDK---TLDELEAEG--AFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAM 174
R+PS+VD+ + D +EG FD+V+ +P E+ LK L+LA+
Sbjct: 1019 RQPSIVDRPGVSRDPWHSEGYVRFDKVK------FSYPTRSEIQVLKG-------LELAV 1065
Query: 175 QHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVTVE--DVHEMFLNHHPNKVHLFYSRD 232
G + +VG +G GK+T + I DE ++ DV + + + N++ +
Sbjct: 1066 SKGQKIALVGPSGCGKSTCIQLIQRFYDVDEGATLIDECDVRNVSMTNLRNQLGIVSQEP 1125
Query: 233 GEGSLSINPKQAIASCLRMKPDRILLTEMRGDEAWEFVKAVGSGH 277
+I + R D+ +++ + EF+ + G+
Sbjct: 1126 ILFDRTIRENISYGDNARNVTDQEIISACKKSNIHEFIANLPLGY 1170
>gi|1321667|dbj|BAA05547| (D26548) Ydr1 [Saccharomyces cerevisiae]
Length = 1444
Score = 32.5 bits (72), Expect = 5.7
Identities = 26/87 (29%), Positives = 39/87 (43%), Gaps = 9/87 (10%)
Query: 121 KPSMVDKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKL-------- 172
KP + L A GA V + PY++ L+K R KE L
Sbjct: 63 KPYSLGCAWKNLSASGASADVAYQSTVVNI-PYKILKSGLRKFQRSKETLTFQILKPMDG 121
Query: 173 AMQHGLTLVIVGKTGSGKTTIGKSITN 199
+ G L+++G+ GSG TT+ KSI++
Sbjct: 122 CLNPGELLIVLGRPGSGCTTLLKSISS 148
>gi|2492589|sp|Q50614|YI19_MYCTU HYPOTHETICAL ABC TRANSPORTER
ATP-BINDING PROTEIN RV1819C >gi|1483552|emb|CAB01460|
(Z78020) hypothetical protein Rv1819c [Mycobacterium
tuberculosis]
Length = 639
Score = 32.5 bits (72), Expect = 5.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 145 DASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP 202
D S L+ EV A +R+ + L + + G +LVI G++G+GKTT+ +S+ P
Sbjct: 424 DESVELNDIEVRTPA---GDRLIDPLDVRLDRGGSLVITGRSGAGKTTLLRSLAELWP 478
>gi|2245023|emb|CAB10443.1| (Z97341) RNA helicase [Arabidopsis
thaliana]
Length = 883
Score = 32.5 bits (72), Expect = 5.7
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 13/43 (30%)
Query: 150 LHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT 192
+H Y ELL L + N++ LVIVG+TGSGKTT
Sbjct: 224 IHGYREELLKLIEENQV-------------LVIVGETGSGKTT 253
>gi|2633804|emb|CAB13306| (Z99111) similar to ABC transporter
(ATP-binding protein) [Bacillus subtilis] >gi|3282117
(AF012285) YknV [Bacillus subtilis]
Length = 604
Score = 32.5 bits (72), Expect = 5.7
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 1/58 (1%)
Query: 141 VENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSIT 198
+ N +G + EVE + + + + ++ G TL +VG TGSGKTTI I+
Sbjct: 354 IHNEKINGEISFEEVEF-SYDEKRKALHAVSFSIPAGSTLALVGHTGSGKTTIANLIS 410
>gi|118965|sp|P23098|DYHC_TRIGR DYNEIN BETA CHAIN, CILIARY
>gi|85393|pir||S17653 dynein beta heavy chain, ciliary -
sea urchin (Tripneustes gratilla) >gi|10710|emb|CAA42170|
(X59603) Beta heavy chain of outer-arm axonemal dynein
ATPase [Tripneustes gratilla] >gi|227997|prf||1714372A
dynein:SUBUNIT=beta heavy chain [Tripneustes gratilla]
Length = 4466
Score = 32.5 bits (72), Expect = 5.7
Identities = 14/49 (28%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTT-IGKSITN 199
P + L+ ++ R++ F+ L M+ G +++VG G GK+ +G ++N
Sbjct: 2428 PMQAVLVHTNETTRVRFFMDLLMERGRPVMLVGNAGLGKSVLVGDKLSN 2476
>gi|3257220|dbj|BAA29903| (AP000003) 327aa long hypothetical
oligopeptide transport ATP-binding protein APPD
[Pyrococcus horikoshii]
Length = 327
Score = 32.5 bits (72), Expect = 5.7
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 154 EVELLALKKSNRIKEF-----LKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
E+E L +K R + +++ G + I+G++GSGK+T+G +I +P + R+
Sbjct: 6 EIEGLTVKYKTRYGTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPENARI 64
>gi|4510377|gb|AAD21465.1| (AC007017) putative ATP-dependent RNA
helicase A [Arabidopsis thaliana]
Length = 993
Score = 32.5 bits (72), Expect = 5.7
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 111 ETRTVSITIRKPSMVDKTLDELEAEGAF-------DQVENVDASGTLHPYEVELLALKKS 163
+ RT ++ +++P K D LE E ++++ ++ L + +L A K
Sbjct: 175 QDRTSTLGLKRPDSASKLPDSLEKEKFSFALKERQEKLKATESVKALKAFREKLPAFKMK 234
Query: 164 NRIKEFLKLAMQHGLTLVIVGKTGSGKTT 192
+EFL Q+ + LV+ G+TG GKTT
Sbjct: 235 ---EEFLNSVSQNQV-LVVSGETGCGKTT 259
>gi|4761215|gb|AAD29279.1|AF112365_2 (AF112365) ProVL [Streptomyces
coelicolor]
Length = 429
Score = 32.5 bits (72), Expect = 5.7
Identities = 28/95 (29%), Positives = 45/95 (46%), Gaps = 7/95 (7%)
Query: 129 LDELEAEGAFDQVENVDASGTLHPYEVELLALKKS-----NRIKEFLKLAMQHGLTLVIV 183
+ E G+ +ASG +EL AL K E + + ++ G T++ V
Sbjct: 1 MSETSVSGSVSDDGRGEASGGTTGATIELEALTKRYPGSPQPAVENVSMEIKAGETVIFV 60
Query: 184 GKTGSGKTTIGKSITNCI-PTDERL-VTVEDVHEM 216
G +G GK+T K IT I P+ R+ + EDV ++
Sbjct: 61 GPSGCGKSTTLKMITRLIEPSGGRIRINGEDVTDI 95
>gi|6015899|emb|CAB57726.1| (Y18930) hypothetical protein
[Sulfolobus solfataricus]
Length = 510
Score = 32.5 bits (72), Expect = 5.7
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 180 LVIVGKTGSGKTTIGKSITNCIPTDERLV-TVEDVHEMFLNHHPNKVHLFYSRDGEGSLS 238
++I G G GKTT ++++ ++V T+E +M L + Y+ GE
Sbjct: 256 IIIAGAPGMGKTTFAQALSEYYMRLGKIVKTIESPRDMHLPPEITQYSKNYAEIGE---- 311
Query: 239 INPKQAIASCLRMKPDRILLTEMRGDEAWEF---VKAVGSGHPGISTAHAGGALEAFDQI 295
L +PD + EMR DE ++ ++ G G G+ HA ++A +
Sbjct: 312 -----LHDILLLSRPDYTVYDEMRNDEDFKLYIDLRLAGIGMVGV--VHATSPIDAIHRF 364
Query: 296 V 296
V
Sbjct: 365 V 365
>gi|1169168|sp|P45081|CYDC_HAEIN TRANSPORT ATP-BINDING PROTEIN CYDC
>gi|1075388|pir||E64186 transport ATP-binding protein
(cydC) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574713 (U32795) transport ATP-binding protein
(cydC) [Haemophilus influenzae Rd]
Length = 576
Score = 32.1 bits (71), Expect = 7.4
Identities = 26/85 (30%), Positives = 41/85 (47%), Gaps = 11/85 (12%)
Query: 109 ACETRTVSITIRKPSMVDKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKE 168
A R I +KP + +E E + +N++ S +P E E L LK
Sbjct: 308 AAAERVTEIIEQKPLVEFNGNEEFETKVRLISAKNLNFS---YP-EQETLVLKN------ 357
Query: 169 FLKLAMQHGLTLVIVGKTGSGKTTI 193
L L ++ G + I+GKTGSGK+++
Sbjct: 358 -LTLDLEQGKKIAILGKTGSGKSSL 381
>gi|6322980|ref|NP_013052.1|YBT1| bile acid transporter of ABC
family; Ybt1p >gi|3915963|sp|P32386|YBT1_YEAST
ATP-DEPENDENT BILE ACID PERMEASE >gi|2132656|pir||S64800
probable membrane protein YLL048c - yeast (Saccharomyces
cerevisiae) >gi|1360247|emb|CAA97500| (Z73153) ORF
YLL048c [Saccharomyces cerevisiae]
Length = 1661
Score = 32.1 bits (71), Expect = 7.4
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 115 VSITIRKPSMVDKTLDELEAEGA--FDQVENVDASGTLHPYEVELLALKKSN---RIKEF 169
+S ++ +D+ D L +DQ+ +D +G +E ++ K N ++K+
Sbjct: 657 LSFVVQSKVSLDRVQDFLNENDTKKYDQL-TIDPNGNRFAFENSTISWDKDNQDFKLKD- 714
Query: 170 LKLAMQHGLTLVIVGKTGSGKTTI 193
L + + G V++G TGSGKT++
Sbjct: 715 LNIEFKTGKLNVVIGPTGSGKTSL 738
>gi|3582216 (AE001272) cytolysin B transport protein [Lactococcus
lactis]
Length = 708
Score = 32.1 bits (71), Expect = 7.4
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 148 GTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERL 207
G++ +V+ S + + + + G T+ +VG +GSGKTT+GK I+ +
Sbjct: 472 GSIVMKDVDFRYTPDSKDALKHISIDINAGQTVALVGISGSGKTTLGKIISTLFKPSKGQ 531
Query: 208 VTVEDVH---------EMFLNHHPNKVHL 227
+ + V ++ + P + HL
Sbjct: 532 IFFDGVEIKNHNLDSLRKYVGYIPQEAHL 560
>gi|5441937|gb|AAD43183.1|AC005048_1 (AC005048) laminin beta
precursor; similar to AAB92586 (PID:g2708707) [Homo
sapiens]
Length = 1631
Score = 32.1 bits (71), Expect = 7.4
Identities = 21/71 (29%), Positives = 37/71 (51%), Gaps = 5/71 (7%)
Query: 125 VDKTLDELEAEGAFDQVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVG 184
+DKTL++L+ Q+ A+ T+ + +KK N ++EF++L Q+ +
Sbjct: 1497 LDKTLNQLQQA----QITQGRANSTITQLTANITKIKK-NVLQEFVELKKQYAILQRKTS 1551
Query: 185 KTGSGKTTIGK 195
TG K T+GK
Sbjct: 1552 TTGLTKETLGK 1562
>gi|290801|gb|AAD15237| (L17003) member of super-family of ABC
proteins [Francisella tularensis (var. novicida)]
Length = 572
Score = 31.7 bits (70), Expect = 9.8
Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 32/222 (14%)
Query: 100 ARVQVVIPPACETRTVSITIRKPSMVDKTLDEL-----EAEGAFDQVENVDASGTLHPYE 154
A ++ P V++ I+K + + + E E ++ VD + T+
Sbjct: 277 AAAAAILKPIKNLTKVNVVIQKAVAATEDIFYILDYPAEKETGSKELAKVDGNVTIK--- 333
Query: 155 VELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIP----------TD 204
+L +++ + + ++ G T+ VGK+GSGKTT+ I+ D
Sbjct: 334 -DLSFAFGEHKVLSGVSVDIKAGQTVAFVGKSGSGKTTLTSIISRFYTQHKGEILLDGVD 392
Query: 205 ERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEMRGD 264
R +T+E++ L+ VHLF ++ A + D + + ++
Sbjct: 393 TRELTLENLRS-HLSIVSQNVHLFDD-------TVYNNIAFGLSREVSEDEV-IDALKRA 443
Query: 265 EAWEFVKAVGSG-HPGI---STAHAGGALEAFDQIVALIKDS 302
A+EFV+ + G H I + +GG + AL+K++
Sbjct: 444 NAYEFVQELSDGIHTNIGNNGSKLSGGQRQRISIARALLKNA 485
>gi|1729824|sp|P54683|TAGB_DICDI PRESTALK-SPECIFIC PROTEIN TAGB
PRECURSOR >gi|664840 (U20432) TagB [Dictyostelium
discoideum]
Length = 1905
Score = 31.7 bits (70), Expect = 9.8
Identities = 39/155 (25%), Positives = 62/155 (39%), Gaps = 22/155 (14%)
Query: 158 LALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI--PTDERLVTVEDV-- 213
+A + N ++ F+ QH TIG++I I PT E ++ +
Sbjct: 1587 IAKIRPNNLRSFVTNVHQHPFLF---------DATIGENIGYAIDNPTQEDIIEAAKLAY 1637
Query: 214 -HEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEM------RGDEA 266
HE F+N P K G S + A+A + K +LL E+ +EA
Sbjct: 1638 AHE-FINDLPKKYDTQIGEAGNLSGGQKKRIAVARAICAKRKIMLLDEITAELDPESEEA 1696
Query: 267 -WEFVKAVGSGHPGISTAHAGGALEAFDQIVALIK 300
+ +K + GH + AH A+ D+I L K
Sbjct: 1697 ITQSIKVLTQGHTVVMVAHKVAAVRDCDKIFVLEK 1731
>gi|1175812|sp|P45221|YE67_HAEIN HYPOTHETICAL ABC TRANSPORTER
ATP-BINDING PROTEIN HI1467 >gi|1073948|pir||D64125
colicin V secretion ATP-binding protein (cvaB) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1574308
(U32825) ABC transporter, ATP-binding protein
[Haemophilus influenzae Rd]
Length = 589
Score = 31.7 bits (70), Expect = 9.8
Identities = 19/75 (25%), Positives = 36/75 (47%), Gaps = 8/75 (10%)
Query: 136 GAFDQVENVDASGTLHPYEVELLALKKSNRIKEF--------LKLAMQHGLTLVIVGKTG 187
G +++ +D HP+ K+ IK+ L + +++G L+I G +G
Sbjct: 367 GFITKMDELDKQNVHHPFHCSHRVALKNFGIKDEQGHVLLNNLNINLENGDALLIQGASG 426
Query: 188 SGKTTIGKSITNCIP 202
+GKT++ K+I P
Sbjct: 427 TGKTSLLKAIAGIYP 441
>gi|1945644|emb|CAB08051| (Z94043) hypothetical protein [Bacillus
subtilis] >gi|2635995|emb|CAB15487| (Z99121) similar to
ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 589
Score = 31.7 bits (70), Expect = 9.8
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 73 LATLIA--SYNGKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLD 130
+A L+A Y G +++ + A + + +I P + T ++K + +
Sbjct: 259 MAALVAVIGYGGMQVSSGELTAGALVAFILYLFQIIMPMGQITTFFTQLQKSIGATERMI 318
Query: 131 ELEAEGAFDQVENVDASGTLHPYEVELLAL--KKSNRIKEFLKLAMQHGLTLVIVGKTGS 188
E+ AE D V P +++ ++ K I + + ++ G IVG +G
Sbjct: 319 EILAEEEEDTVTGKQIENAHLPIQLDRVSFGYKPDQLILKEVSAVIEAGKVTAIVGPSGG 378
Query: 189 GKTTIGK 195
GKTT+ K
Sbjct: 379 GKTTLFK 385
>gi|2980641|emb|CAA72120| (Y11250) multi resistance protein
[Arabidopsis thaliana]
Length = 1514
Score = 31.7 bits (70), Expect = 9.8
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 146 ASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE 205
A+GT+ +V++ + + + G + IVG+TGSGK+T+ +++ I
Sbjct: 1264 ATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTA 1323
Query: 206 RLVTVEDV 213
+T++++
Sbjct: 1324 GKITIDNI 1331
>gi|3142303 (AC002411) Strong similarity to MRP-like ABC transporter
gb|U92650 from A. thaliana and canalicular multi-drug
resistance protein gb|L49379 from Rattus norvegicus.
[Arabidopsis thaliana]
Length = 1355
Score = 31.7 bits (70), Expect = 9.8
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 146 ASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDE 205
A+GT+ +V++ + + + G + IVG+TGSGK+T+ +++ I
Sbjct: 1105 ATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTA 1164
Query: 206 RLVTVEDV 213
+T++++
Sbjct: 1165 GKITIDNI 1172
>gi|3322406 (AE001199) thiamine ABC transporter, ATP-binding
protein, putative [Treponema pallidum]
Length = 220
Score = 31.7 bits (70), Expect = 9.8
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 152 PYEV--ELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVT 209
PY V EL + + RI L +++ G +L ++G +G GK+TI K I I D V
Sbjct: 5 PYVVVQELTKVWEEKRIS--LSFSLRQGTSLALLGASGCGKSTILKMIAGLITPDHGSVF 62
Query: 210 V 210
+
Sbjct: 63 I 63
>gi|4376676|gb|AAD18541| (AE001623) CT041 hypothetical protein
[Chlamydia pneumoniae]
Length = 272
Score = 31.7 bits (70), Expect = 9.8
Identities = 28/104 (26%), Positives = 47/104 (44%), Gaps = 6/104 (5%)
Query: 242 KQAIASCLRMKPDRILLTEM---RGDEAWEFVKAVGSGHPGIS-TAHAGGALEAFDQIVA 297
K+A+++C+ + +R L E R + + VKA G+ G T G EA D
Sbjct: 156 KEALSACIIL--ERTALYEKLLARNPQNFWHVKAEEEGYAGFGVTKQFYGVEEAIDWTAR 213
Query: 298 LIKDSATGAHLDAAYIKKRVFETVDIVLYYVHHKLREIYYDPEF 341
L+ DS G +DA + + + + I + L + Y D +F
Sbjct: 214 LVVDSPQGLIIDAQGLLQSNVDRLAIEGFNARQILEKFYKDVDF 257
>gi|4376693|gb|AAD18557| (AE001624) Transport ATP Binding Protein
[Chlamydia pneumoniae]
Length = 659
Score = 31.7 bits (70), Expect = 9.8
Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 1/74 (1%)
Query: 140 QVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITN 199
++E + S T+ +E ++ I + L + G L IVG TGSGKTT+ K +
Sbjct: 389 EIEFLGLSNTI-TFENVSFGYQEDKHILKNLSFTLHKGEALGIVGPTGSGKTTLVKLLPR 447
Query: 200 CIPTDERLVTVEDV 213
+ + ++ +
Sbjct: 448 LYEVSQGKILIDSL 461
>gi|6459421|gb|AAF11212.1|AE002008_7 (AE002008) Mg(2+) chelatase
family protein [Deinococcus radiodurans]
Length = 519
Score = 31.7 bits (70), Expect = 9.8
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 QVENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITN 199
Q E + L P +L LK + L++A+ G L++VG GSGKT + +
Sbjct: 196 QPETPEDDAALFP---DLGDLKGQTAARRALEVALAGGHNLLMVGSPGSGKTMLARRAPG 252
Query: 200 CIPTDERLVTVE 211
+P R +E
Sbjct: 253 LLPPLTRAEALE 264
>gi|6706264|emb|CAB65927.1| (AL136326) dynein heavy chain [Leishmania
major]
Length = 3475
Score = 31.7 bits (70), Expect = 9.8
Identities = 21/86 (24%), Positives = 37/86 (42%), Gaps = 12/86 (13%)
Query: 152 PYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCIPTDERLVT-- 209
PY +++ R + + + LV+VG TG+GK+ I + + +P D + T
Sbjct: 2678 PYYEQIVPTVDVIRYSYIVSQLVLSSVQLVLVGTTGTGKSLIANQVLHDLPADMYVATHL 2737
Query: 210 ----------VEDVHEMFLNHHPNKV 225
V+D+ E + H KV
Sbjct: 2738 HFSAQTTAKNVQDIIEGRMEHTSKKV 2763
Database: nr
Posted date: Feb 20, 2000 12:20 AM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96147271
Number of Sequences: 457798
Number of extensions: 3879753
Number of successful extensions: 14122
Number of sequences better than 10.0: 258
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 13771
Number of HSP's gapped (non-prelim): 295
length of query: 347
length of database: 140,871,481
effective HSP length: 56
effective length of query: 291
effective length of database: 115,234,793
effective search space: 33533324763
effective search space used: 33533324763
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)