BLASTP 2.0.10 [Aug-26-1999] 

Query= XF-00P00-GL08
         (238 letters)

Database: nr
           457,798 sequences; 140,871,481 total letters

Graphical Overview:

                                                                Score     E
Sequences producing significant alignments:                     (bits)  Value

gi|348627|pir||G44020 TrbF - plasmid RK2 >gi|152560 (M93696) tr...   214    6e-55
gi|1572552 (U67194) TrbF [Enterobacter aerogenes]                    206    2e-52
gi|2499047|sp|P55403|TRBF_RHISN PROBABLE CONJUGAL TRANSFER PROT...   120    1e-26
gi|1730022|sp|P54914|TRBF_AGRT6 CONJUGAL TRANSFER PROTEIN TRBF ...   115    3e-25
gi|2982712|dbj|BAA25281| (AB006858) trbF [Agrobacterium tumefac...   111    6e-24
gi|3676527 (AF060870) distal tail fiber large subunit gp37 [bac...    34    1.6
gi|6007535|gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog [B...    32    3.6
gi|2062626 (U87242) HtrA [Mycobacterium tuberculosis]                 32    3.6
gi|2315224|emb|CAB10920| (Z98260) htrA [Mycobacterium tuberculo...    32    3.6
gi|133290|sp|P28615|RP54_ALCEU RNA POLYMERASE SIGMA-54 FACTOR >...    32    4.7
gi|4105699|gb|AAD02501| (AF049870) receptor kinase [Arabidopsis...    32    4.7
gi|2160756 (U96879) CLV1 receptor kinase [Arabidopsis thaliana]       32    6.2
gi|2252830 (AF013293) weak similarity to receptor protein kinas...    32    6.2
gi|1652806|dbj|BAA17725| (D90908) isopenicillin N epimerase [Sy...    32    6.2
gi|6721118|gb|AAF26772.1|AC007396_21 (AC007396) T4O12.5 [Arabid...    32    6.2
gi|6434445|emb|CAB60910.1| (AL132896) predicted using Genefinde...    31    8.1

>gi|348627|pir||G44020 TrbF - plasmid RK2 >gi|152560 (M93696) trbF
           [Plasmid RP4]
           Length = 252
           
 Score =  214 bits (539), Expect = 6e-55
 Identities = 106/221 (47%), Positives = 146/221 (65%), Gaps = 1/221 (0%)

Query: 19  TANPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQ 78
           T NPYL ARR+WN HVG ++   Q    VG+L ++I LAAVGG+ +IGSQSKF+P V++ 
Sbjct: 32  TDNPYLTARRTWNDHVGSVVSQKQTWQVVGILSLMIVLAAVGGIIHIGSQSKFVPYVYEV 91

Query: 79  DGSGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDP 138
           D  G T ++       +A       +V++F+ + RLVTPD  LQ KAV + Y  L PNDP
Sbjct: 92  DKLGQTAAVGPMTRASKADPRVIHASVAEFVGDARLVTPDVALQRKAVYRLYAKLGPNDP 151

Query: 139 ATLKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAP 198
           AT K  E+LNGT + +PF RAA E V+ ++ SV+ Q+ DTWQ+DW ET R R G +KG P
Sbjct: 152 ATAKMNEWLNGTADASPFARAAVETVSTEITSVIPQTPDTWQVDWVETTRDRQGVVKGQP 211

Query: 199 YMMRALVTIYQNKDT-EVKPEKMLINPHFIFVKDYNWSKQL 238
             MRALVT+Y  + T + K E++  NP  I+V+D++WS+ L
Sbjct: 212 VRMRALVTVYVVEPTADTKEEQLRNNPAGIYVRDFSWSRLL 252


>gi|1572552 (U67194) TrbF [Enterobacter aerogenes]
           Length = 260
           
 Score =  206 bits (518), Expect = 2e-52
 Identities = 102/217 (47%), Positives = 140/217 (64%), Gaps = 1/217 (0%)

Query: 21  NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 80
           NPYL ARR+WN HVG ++   Q    +G+L +LI LA VGG+ +IGSQSKFIP V + D 
Sbjct: 42  NPYLAARRTWNDHVGGVVSQRQTWQVIGILSLLIALAGVGGVIHIGSQSKFIPYVVEVDK 101

Query: 81  SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 140
            G T++        +A       AV+D+++  R+V+PD  LQ K V K Y    PNDPAT
Sbjct: 102 LGQTVAAGPVQAAGKADPRVIHAAVADWMSCARMVSPDVALQRKCVFKAYSMFAPNDPAT 161

Query: 141 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAPYM 200
            K  E+LNGT +++PF RA  EMV+V++K+V+ Q+ DTWQ++W ET R R G+LKG P  
Sbjct: 162 PKMNEWLNGTPDSSPFKRAEKEMVSVEIKTVIPQTPDTWQVEWVETTRDRQGTLKGQPVT 221

Query: 201 MRALVTIYQNKDT-EVKPEKMLINPHFIFVKDYNWSK 236
            RALVT Y  + T     E++  NP  I+V+DY+WS+
Sbjct: 222 WRALVTTYIAEVTPNTTDEQLRNNPLSIYVRDYSWSR 258


>gi|2499047|sp|P55403|TRBF_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN
           TRBF >gi|2182346 (AE000068) TrbF [Rhizobium sp. NGR234]
           Length = 220
           
 Score =  120 bits (298), Expect = 1e-26
 Identities = 67/219 (30%), Positives = 115/219 (51%), Gaps = 8/219 (3%)

Query: 21  NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 80
           NPYL AR+ W    G  ++ +     VG+LG+ + +   G   Y+ ++ K +P + Q D 
Sbjct: 9   NPYLAARQEWTERYGSYVRAAAAWRTVGILGLAMAVIGFGYAMYLSTEVKLVPYIVQVDK 68

Query: 81  SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 140
            G +++   P+ I  A V   R  + +F+T+ R +TPDA +Q + + +TY  L  +DP+T
Sbjct: 69  LGTSVTTGFPEQIEYADVRVVRATLGNFVTSFRSITPDAAVQKQYIDRTYVLLRTSDPST 128

Query: 141 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGA-PY 199
            K   +  G    +PF +A    V ++V +++  S  T+QIDW E  R R G   G   +
Sbjct: 129 EKINAWFRG---NSPFEKAKTATVAIEVNNIVALSNQTYQIDWTEYERDRKGKEIGTRRF 185

Query: 200 MMRALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 238
              A VT+   +D       + +NP  ++V+D++W+ QL
Sbjct: 186 RGIATVTLTAPQDEAT----IRLNPIGLYVRDFDWTAQL 220


>gi|1730022|sp|P54914|TRBF_AGRT6 CONJUGAL TRANSFER PROTEIN TRBF
           >gi|1163223 (U43675) TrbF [Agrobacterium tumefaciens]
           Length = 220
           
 Score =  115 bits (286), Expect = 3e-25
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 10/220 (4%)

Query: 21  NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 80
           NPY+ AR  WN   G  ++ +     VG+ GM + +   G   Y  +Q K IP + + D 
Sbjct: 9   NPYIAARNEWNERYGSYVKAAAAWRIVGITGMTMAVIGFGYALYQSTQVKLIPYIVEVDK 68

Query: 81  SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 140
            G  ++   P  I  A     R  +  F++N R VTPDA +Q + + +TYG L  +DPAT
Sbjct: 69  LGTAVNAGFPQQIEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYGLLRTSDPAT 128

Query: 141 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAPYM 200
            K   +    +  +PF +A    V ++V +++  S  ++Q+DW E  R R G  + A   
Sbjct: 129 EKVNAWF---RSNSPFEKAKTATVAIEVNNIVALSNQSYQVDWTEFERDRRGK-ETATRR 184

Query: 201 MR--ALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 238
            R  A VT+   +D  V    + +NP  ++++D++W+ QL
Sbjct: 185 FRGIATVTLTPPQDEGV----IRLNPIGLYLRDFDWTAQL 220


>gi|2982712|dbj|BAA25281| (AB006858) trbF [Agrobacterium
           tumefaciens] >gi|3766182 (AF057718) TrbF [Agrobacterium
           tumefaciens] >gi|6498183|dbj|BAA87635.1| (AB016260)
           Probable trbF gene [Agrobacterium tumefaciens]
           Length = 220
           
 Score =  111 bits (275), Expect = 6e-24
 Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 8/219 (3%)

Query: 21  NPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDG 80
           NPY+ AR  WN   G  ++ +     VG+ GM++ +       Y  +Q K +P + + D 
Sbjct: 9   NPYIAARTEWNERYGSYVKAAAAWRLVGVTGMIMAVIGFSYALYQSTQVKLVPYIVEVDK 68

Query: 81  SGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPAT 140
            G   +   P  I  A     R  +  F++N R VTPDA +Q + + +TY  L  +DPAT
Sbjct: 69  LGTASNAGFPQQIEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYALLRTSDPAT 128

Query: 141 LKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGA-PY 199
            K   +    + ++PF +A N  V V+V +++  S  ++QIDW E  R R G       +
Sbjct: 129 EKVNAWF---RSSSPFEKAKNATVAVEVNNIVALSNQSYQIDWTEFERDRRGKETATRRF 185

Query: 200 MMRALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 238
              A VT+   +D  V    + +NP  ++++D +W+ QL
Sbjct: 186 RSIATVTLTPPQDEGV----IRLNPIGLYLRDLDWTAQL 220


>gi|3676527 (AF060870) distal tail fiber large subunit gp37
           [bacteriophage Ac3]
           Length = 1103
           
 Score = 33.6 bits (75), Expect = 1.6
 Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 14/152 (9%)

Query: 48  GLLGMLIG-LAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRPDHIPEARVDDYRTAVS 106
           GLL +  G +  VGGM  I  ++    ++F+    GNT   +  D+I      D    V 
Sbjct: 394 GLLVITPGNVDVVGGMVTIDGKNYASSVLFK----GNTTGYSSVDNIELKVWGDTFNTVG 449

Query: 107 DFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKEYLNGTKETNPFNRAANEMVNV 166
               N+   +   G  H     T G +      T+   E +N +KE N     A+  VN 
Sbjct: 450 GTRKNVMETSDATGWMHYIQRTTAGKVESYLNGTMNVNESINVSKEVNASGTIASNAVN- 508

Query: 167 DVKSVLQQSKDTWQIDWQETVRGRDGSLKGAP 198
                   +   W  D+    R  +GSL   P
Sbjct: 509 --------ALRIWNADYGAIFRRSEGSLHIIP 532


>gi|6007535|gb|AAF00946.1|AF182718_7 (AF182718) VirB8 homolog
           [Bartonella henselae]
           Length = 202
           
 Score = 32.5 bits (72), Expect = 3.6
 Identities = 41/190 (21%), Positives = 78/190 (40%), Gaps = 13/190 (6%)

Query: 45  IFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRPDHIPEARVDDYRTA 104
           +  GL+ + + LA V  +T + +   F+  V    G   T+S  +         +DY  A
Sbjct: 16  VLFGLMTIALALA-VAALTPLKTVEPFVIRVDNSTGIIETVSALKETP------NDYDEA 68

Query: 105 VSDFITNIRLVTPDAGLQHKAVLKTYGY--LVPNDPATLKTKEYLNGTKETNPFNRAANE 162
           ++ +  + + V    G Q       +    L+ +     +  ++  G    +P N   N 
Sbjct: 69  ITRYFAS-KYVRAREGFQLSEAEHNFRLVSLLSSPEEQSRFAKWYAGNNPESPQNIYQNM 127

Query: 163 MVNVDVKSVLQQSKDTWQIDWQETVRGRDGSLKGAPYMMRALVTIYQNKDTEVKPEKMLI 222
           +  V +KS+   SKD  Q+ + +TVR  +   +   + +  L   Y N   ++  +  LI
Sbjct: 128 IATVTIKSISFLSKDLIQVRYYKTVRELNDK-ENISHWVSILNFSYIN--AQISTQDRLI 184

Query: 223 NPHFIFVKDY 232
           NP    V +Y
Sbjct: 185 NPLGFQVSEY 194


>gi|2062626 (U87242) HtrA [Mycobacterium tuberculosis]
           Length = 542
           
 Score = 32.5 bits (72), Expect = 3.6
 Identities = 46/173 (26%), Positives = 71/173 (40%), Gaps = 20/173 (11%)

Query: 50  LGMLIGLAAV-GGMT-YIGSQSKFIPLVFQQDGSGNTISMTRPDHIPEARVDDYRTAVSD 107
           LG+L+ +A V GG+   IG ++  +   F    S  T+S T     P  R      AV+D
Sbjct: 195 LGILVAIALVIGGIGGVIGRKTAEVVDAFTT--SKVTLSTTGNAQEPAGRFTKVAAAVAD 252

Query: 108 FITNIRLVTPDAGLQHKAVL-KTYGYLV---------PNDPATLKTKEYLNGTKETNPFN 157
            +  I  V+   G+Q   V+    GY+V          N+P+  KT    N  KE  P N
Sbjct: 253 SVVTIESVSDQEGMQGSGVIVDGRGYIVTNNHVISEAANNPSQFKTTVVFNDGKEV-PAN 311

Query: 158 RAANEMVNVDVKSVLQQSKDTWQI----DWQETVRGRDGSLKGAPYMMRALVT 206
               +    D+  +   + D   +    D  +   G +    GAP  +R+ VT
Sbjct: 312 LVGRD-PKTDLAVLKVDNVDNLTVARLGDSSKVRVGDEVLAVGAPLGLRSTVT 363


>gi|2315224|emb|CAB10920| (Z98260) htrA [Mycobacterium tuberculosis]
           Length = 549
           
 Score = 32.5 bits (72), Expect = 3.6
 Identities = 46/173 (26%), Positives = 71/173 (40%), Gaps = 20/173 (11%)

Query: 50  LGMLIGLAAV-GGMT-YIGSQSKFIPLVFQQDGSGNTISMTRPDHIPEARVDDYRTAVSD 107
           LG+L+ +A V GG+   IG ++  +   F    S  T+S T     P  R      AV+D
Sbjct: 202 LGILVAIALVIGGIGGVIGRKTAEVVDAFTT--SKVTLSTTGNAQEPAGRFTKVAAAVAD 259

Query: 108 FITNIRLVTPDAGLQHKAVL-KTYGYLV---------PNDPATLKTKEYLNGTKETNPFN 157
            +  I  V+   G+Q   V+    GY+V          N+P+  KT    N  KE  P N
Sbjct: 260 SVVTIESVSDQEGMQGSGVIVDGRGYIVTNNHVISEAANNPSQFKTTVVFNDGKEV-PAN 318

Query: 158 RAANEMVNVDVKSVLQQSKDTWQI----DWQETVRGRDGSLKGAPYMMRALVT 206
               +    D+  +   + D   +    D  +   G +    GAP  +R+ VT
Sbjct: 319 LVGRD-PKTDLAVLKVDNVDNLTVARLGDSSKVRVGDEVLAVGAPLGLRSTVT 370


>gi|133290|sp|P28615|RP54_ALCEU RNA POLYMERASE SIGMA-54 FACTOR
           >gi|477782|pir||B48362 transcription initiation factor
           sigma 54 - Alcaligenes eutrophus >gi|38785|emb|CAA47287|
           (X66793) sigma factor 54 [Ralstonia eutropha]
           Length = 493
           
 Score = 32.1 bits (71), Expect = 4.7
 Identities = 24/86 (27%), Positives = 41/86 (46%), Gaps = 6/86 (6%)

Query: 52  MLIGLAAVGGMTYIGSQSKFI-PLVFQQDGSGNTISMTRPDHIPEARVDDYRTAVSDFIT 110
           ++  LA   G  Y   ++ F+ P VF + G G  I+   PD +P  R++D     +  + 
Sbjct: 269 LIRSLAPYPGHAYSRPEADFVVPDVFVRKGGGGWIAQLNPDVMPRLRIND---MYAQILR 325

Query: 111 NIRLVTPDAGLQHKAVLKTYGYLVPN 136
             +  +  AGLQ K  L+   +L+ N
Sbjct: 326 GAKGESGTAGLQQK--LQEARWLIKN 349


>gi|4105699|gb|AAD02501| (AF049870) receptor kinase [Arabidopsis
           thaliana]
           Length = 980
           
 Score = 32.1 bits (71), Expect = 4.7
 Identities = 27/115 (23%), Positives = 45/115 (38%), Gaps = 12/115 (10%)

Query: 31  NSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRP 90
           N  +G+++  S+ G         + + A  G+ Y+       PL+  +D   N I +   
Sbjct: 771 NGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCS--PLILHRDVKSNNILLD-- 826

Query: 91  DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKE 145
                    D+   V+DF     LV   A     ++  +YGY+ P    TLK  E
Sbjct: 827 --------SDFEAHVADFGLAKFLVDGAASECMSSIADSYGYIAPEYAYTLKVDE 873


>gi|2160756 (U96879) CLV1 receptor kinase [Arabidopsis thaliana]
           Length = 980
           
 Score = 31.7 bits (70), Expect = 6.2
 Identities = 27/115 (23%), Positives = 45/115 (38%), Gaps = 12/115 (10%)

Query: 31  NSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRP 90
           N  +G+++  S+ G         + + A  G+ Y+       PL+  +D   N I +   
Sbjct: 771 NGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCS--PLILHRDVKSNNILLD-- 826

Query: 91  DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKE 145
                    D+   V+DF     LV   A     ++  +YGY+ P    TLK  E
Sbjct: 827 --------SDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDE 873


>gi|2252830 (AF013293) weak similarity to receptor protein kinase
           [Arabidopsis thaliana]
           >gi|6049872|gb|AAF02787.1|AF195115_7 (AF195115) weak
           similarity to receptor protein kinase [Arabidopsis
           thaliana]
           Length = 341
           
 Score = 31.7 bits (70), Expect = 6.2
 Identities = 17/52 (32%), Positives = 31/52 (58%), Gaps = 3/52 (5%)

Query: 99  DDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKEYLNGT 150
           DD + A ++F++ I+ +   A + H +++K YG++V ND   L  +   NGT
Sbjct: 69  DDRQGADAEFMSEIQTL---AQVTHLSLVKYYGFVVHNDEKILVVEYVANGT 117


>gi|1652806|dbj|BAA17725| (D90908) isopenicillin N epimerase
           [Synechocystis sp.]
           Length = 401
           
 Score = 31.7 bits (70), Expect = 6.2
 Identities = 19/69 (27%), Positives = 30/69 (42%), Gaps = 9/69 (13%)

Query: 124 KAVLKTYGYLVPNDPATLKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDT----- 178
           +A+   YGYL  N P ++   +Y+   +      +A  E  NVD  ++      T     
Sbjct: 37  EAITAMYGYLQENGPFSIAANQYIQ--QLIAQLRQALGETFNVDPNTITITDNVTTGCDI 94

Query: 179 --WQIDWQE 185
             W IDWQ+
Sbjct: 95  VLWGIDWQK 103


>gi|6721118|gb|AAF26772.1|AC007396_21 (AC007396) T4O12.5
           [Arabidopsis thaliana]
           Length = 978
           
 Score = 31.7 bits (70), Expect = 6.2
 Identities = 27/115 (23%), Positives = 45/115 (38%), Gaps = 12/115 (10%)

Query: 31  NSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQSKFIPLVFQQDGSGNTISMTRP 90
           N  +G+++  S+ G         + + A  G+ Y+       PL+  +D   N I +   
Sbjct: 769 NGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCS--PLILHRDVKSNNILLD-- 824

Query: 91  DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKE 145
                    D+   V+DF     LV   A     ++  +YGY+ P    TLK  E
Sbjct: 825 --------SDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDE 871


>gi|6434445|emb|CAB60910.1| (AL132896) predicted using Genefinder;
           preliminary prediction [Caenorhabditis elegans]
           Length = 1365
           
 Score = 31.3 bits (69), Expect = 8.1
 Identities = 25/106 (23%), Positives = 46/106 (42%), Gaps = 8/106 (7%)

Query: 91  DHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAVLKTYGYLVPNDPATLKTKEYLNGT 150
           DH      DDYR+   +FI N+++V+      H      +   +  D        ++   
Sbjct: 383 DHEGRKYSDDYRSKGIEFINNVKIVS-----DHFTAFYNFTQTLDLDQLETDVAAFVESL 437

Query: 151 KETNPFNRAANEMVNVD-VKSVLQQSKDTWQIDWQETVRGRDGSLK 195
             T+  NR  +EM  ++ VK++   +    +I  QE+V+G +   K
Sbjct: 438 NFTDINNRTQSEMEVIEIVKNIRSNNISLTKI--QESVKGIENQFK 481


  Database: nr
    Posted date:  Feb 20, 2000 12:20 AM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70892562
Number of Sequences: 457798
Number of extensions: 2839450
Number of successful extensions: 6688
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6672
Number of HSP's gapped (non-prelim): 17
length of query: 238
length of database: 140,871,481
effective HSP length: 54
effective length of query: 184
effective length of database: 116,150,389
effective search space: 21371671576
effective search space used: 21371671576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 69 (31.3 bits)