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Description

Internal Name:XF-06C06-GL20
Synonym:XF-07B03-GL40
Product:initiation factor IF-3 (18.4 kDa)
Gene Name:INFC
Category:III.C.1 (Protein metabolism - Translation and modification)
Secondary Category:none
Accession:SP|O68844
EC/TC Number:In preparation
Coordinates:693490-693969 U (480 bp) (159 aa)

Characteristics

Gene found by:Glimmer
RBS:Yes

Other Information

BLASTP | BLASTX | BLASTP/NOFILTER | COG | PSORT | PFAM

Annotation Notepad

Strongest similarity (2e-44) to Vibrio cholerae (gi|3095162)initiation factor IF3. Also similar (2e-43) to Escherichia coli (sp|P02999|)and to several spp. translation initiation factor IF-3.The E.coli comments on this protein is: [FUNCTION] IF-3 BINDS TO THE 30S RIBOSOMAL SUBUNIT AND SHIFTS THE EQUILIBRUM BETWEEN 70S RIBOSOMES AND THEIR 50S AND 30S SUBUNITS IN FAVOR OF THE FREE SUBUNITS, THUS ENHANCING THE AVAILABILITY OF 30S SUBUNITS ON WHICH PROTEIN SYNTHESIS INITIATION BEGINS. [FUNCTION] IF-3 IS ALSO A TRANSLATIONAL REPRESSOR PROTEI, IT CONTROLS THE TRANSLATION OF ITS OWN GENE BY BINDING TO ITS MRNA. [SUBUNIT] MONOMER. EXISTS IN 2 MAIN FORMS, IF-3L AND IF-3S. THERE IS AT LEAST ONE MINOR FORM THAT DIFFERS FROM IF-3L ONLU IN THE ABSENCE OF THE FIRST RESIDUE. [SIMILARITY] BELONGS TO THE IF-3 FAMILY'. Similar to several spp. translation initiation factor IF-3. Strong similarity (2e-44) to Vibrio cholerae (gi|3095162) initiation factor IF3. Aso similar (2e-43) to Escherichia coli (sp|P02999|) TRANSLATION INITIATION FACTOR IF3. The E.coli comments are: '[FUNCTION] IF-3 BINDS TO THE 30S RIBOSOMAL SUBUNIT AND SHIFTS THE EQUILIBRUM BETWEEN 70S RIBOSOMES AND THEIR 50S AND 30S SUBUNITS IN FAVOR OF THE FREE SUBUNITS, THUS ENHANCING THE AVAILABILITY OF 30S SUBUNITS ON WHICH PROTEIN SYNTHESIS INITIATION BEGINS. [FUNCTION] IF-3 IS ALSO A TRANSLATIONAL REPRESSOR PROTEIN, IT CONTROLS THE TRANSLATION OF ITS OWN GENE BY BINDING TO ITS MRNA. [SUBUNIT] MONOMER. EXISTS IN 2 MAIN FORMS, IF-3L AND IF-3S. THERE IS AT LEAST ONE MINOR FORM THAT DIFFERS FROM IF-3L ONLY IN THE ABSENCE OF THE FIRST RESIDUE. [SIMILARITY] BELONGS TO THE IF-3 FAMILY.'


© 2000 Xylella fastidiosa Genome Project