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Description

Internal Name:XF-06A08-GL15
Synonym:XF-07A01-GL03
Product:GDP-mannose 4,6 dehydratase (39.0 kDa)
Gene Name:GMD
Category:I.B.11 (Central intermediary metabolism - Sugar-nucleotide biosynthesis, conversions)
Secondary Category:none
Accession:SP|P32054
EC/TC Number:In preparation
Coordinates:587350-588390 U (1041 bp) (346 aa)

Characteristics

Gene found by:Glimmer
RBS:Yes

Other Information

BLASTP | BLASTX | BLASTP/NOFILTER | COG | PSORT | PFAM

Annotation Notepad

Similar to several spp. GDP-D-mannose dehydratase (EC 4.2.1.47). Strongest (e-117) similarity to Aquifex aeolicus GDP-D-mannose dehydratase (gi|2983560). Also similar (1e-95) to E.coli GDP-D-mannose dehydratase (sp|P32054|GM4D_ECOLI, gmd gene) whose comments are:'[FUNCTION] INVOLVED IN THE BIOSYNTHESIS OF THE SLIME POLYSACCHARIDE COLANIC ACID.[CATALYTIC ACTIVITY] GDP-MANNOSE = GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE + H(2)O.[COFACTOR] NADP(+).[SUBUNIT] HOMOHEXAMER.[SIMILARITY] STRONG, TO OTHER GDP-MANNOSE 4,6-DEHYDRATASE. ALSO SIMILAR TO DTDP-GLUCOSE 4,6-DEHYDRATASES.' The COGnitor analysis included the translational product of this ORF in COG1089 (7) - GDP-D-mannose dehydratase. The Pfam analysis determined a NAD dependent epimerase/dehydratase family motif (4.3e-10) from aa 6 to 340


© 2000 Xylella fastidiosa Genome Project